ID:

dsi_4413

 Coordinate:

2r:3195013-3195162 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.6 -12.6 -12.5 -12.0

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Hoyak2DNAhAT-Ac+
DNAREP1_DMRCHelitron-
mature
  1. dsi_4413  2r:3195084-3195107 -
  2. x:6378157-6378180 +
  3. x:19874683-19874706 -
star
  1. 2l:20769294-20769318 -
  2. 2l:23185926-23185950 -
  3. 2r:689192-689216 -
  4. 2r:1378649-1378673 -
  5. 2r:2090263-2090287 -
  6. 2r:2131470-2131494 -
  7. 2r:2787397-2787421 -
  8. 3l:22464667-22464691 -
  9. 3r:27151537-27151561 -
  10. dsi_8496  4:472412-472436 -
  11. 4:623819-623843 -
  12. 4:784021-784045 -
  13. 4:1010351-1010375 -
  14. x:16562008-16562032 -
  15. x:20396901-20396925 -
  16. node_27019:1237-1261 -
  17. node_90918:6089-6113 -
  18. node_64906:2535-2559 -
  19. node_39788:9104-9128 -
  20. node_52187:530-554 -
  21. 2l:22171003-22171027 -
  22. 2l:22177711-22177735 -
  23. 2l:22479771-22479795 -
  24. 2l:22605098-22605122 -
  25. dsi_27449  2l:23528713-23528737 -
  26. 2r:240683-240707 -
  27. 2r:1309118-1309142 -
  28. 2r:1558232-1558256 -
  29. x:16871507-16871531 -
  30. x:20772798-20772822 -
  31. 2l:20902572-20902596 +
  32. 2l:21856002-21856026 +
  33. 2l:22614757-22614781 +
  34. 2l:22735685-22735709 +
  35. 2r:2586223-2586247 +
  36. 2r:2619549-2619573 +
  37. 2r:2805827-2805851 +
  38. 2r:16829507-16829531 +
  39. 3l:22601009-22601033 +
  40. 3l:22651280-22651304 +
  41. 3l:22716534-22716558 +
  42. 3l:23711955-23711979 +
  43. 3l:23809631-23809655 +
  44. 4:447029-447053 +
  45. x:3395966-3395990 +
  46. x:18875695-18875719 +
  47. dsi_27652  x:19732965-19732989 +
  48. x:20805971-20805995 +
  49. node_62956:1152-1176 +
  50. node_27742:5209-5233 +
  51. 2l:11133841-11133865 +
  52. 2l:22497684-22497708 +
  53. 2r:1327031-1327055 +
  54. 2r:2854791-2854815 +
  55. 3l:23160762-23160786 +
  56. 3l:23812259-23812283 +
  57. x:108414-108438 +
  58. x:10292327-10292351 +
  59. x:20417135-20417159 +
  60. node_44328:2239-2263 +
  61. node_76011:5336-5360 +
  62. node_62956:5968-5992 +
  63. node_52186:1122-1146 +
  64. node_52714:2413-2437 +
  65. node_11571:4809-4833 +
  66. 2r:14154828-14154852 +
  67. 3l:18113680-18113704 +
  68. 2l:21184204-21184228 -
  69. 2l:22729545-22729569 -
  70. 2r:323343-323367 -
  71. dsi_4413  2r:3195049-3195073 -
  72. 3l:19327804-19327828 -
  73. 3l:19646524-19646548 -
  74. 3l:22791339-22791363 -
  75. 3r:64580-64604 -
  76. x:18821712-18821736 -
  77. x:19481428-19481452 -
  78. node_22030:7625-7649 -

Sense Strand Reads

AACTTTTTGCCACTCCCACACTTTGGAACATTTTTAAAATTTTTTCTCATTTTATTCCCCAATATCTATGGATATCCCAAAAAGATTATAAAATTTCGCGTTCGCATTCACACTAGATGAGTAACGGGTATCTGATAGTCGGGGAACTCGACTATAGCATTCTCTCTTGTTTTCATCTTGAAAATAATTATCGATTCCAGTTAACGACGAGGACGACGTCGCGGACGGAGTGCCCGAGAGCATATACGCT
*********************************************************************************************************..........((.................(((((((((...))))))))).......))************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 M053
female body
 M024
male body		 O001
Testis
 SRR553488
RT_0-2 hours eggs
 O002
Head
 SRR902009
testis
 M023
head
.........................................................................................................ATTCACACTAGATGAGTAACGGGT......................................................................................................................... 24 0 3 5.00 15 0 2 0 11 1 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................TTCCAGTTAACGACGAGGACGACGT............................... 25 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGACGTCGCGGACGGAGTGCCCGAGA........... 26 0 1 3.00 3 1 0 0 0 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GCGGACGGAGTGCCCGAGAGCATA...... 24 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................ACGACGAGGACGACGTCGCGGACGGAG.................... 27 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGACGTCGCGGACGGAGTGCCCGAG............ 25 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0
..........................................................................................................TTCACACTAGATGAGTAACGGGTAT....................................................................................................................... 25 0 3 2.00 6 1 0 4 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................TATCGATTCCAGTTAACGACGAGGA..................................... 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CGCGGACGGAGTGCCCGAGA........... 20 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CGCGGACGGAGTGCCCGAGAGCATA...... 25 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TATCTGATAGTCGGGGAACTCGA................................................................................................... 23 0 20 1.65 33 0 0 0 0 33 0 0 0 0 0 0 0 0
..............................................................................................TTCGCGTTCGCATTCACACTAGATGAGTA............................................................................................................................... 29 0 2 1.50 3 0 2 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................CGGGGAACTCGACTATAGCATTCTC...................................................................................... 25 0 20 1.40 28 0 0 28 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TCGACTATAGCATTCTCTCTTGTTTTC............................................................................ 27 0 6 1.33 8 0 0 0 4 4 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GGACGACGTCGCGGACGGAGT................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................TAAAATTTCGCGTTCGCATTCAC........................................................................................................................................... 23 0 5 1.00 5 0 0 0 0 0 0 0 0 5 0 0 0 0
...................................................................................................................................................................................................TCCAGTTAACGACGAGGACGACGTC.............................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TTATCGATTCCAGTTAACGACGAGGA..................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CGCGGACGGAGTGCCCGAGAGC......... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................TAATTATCGATTCCAGTTAAC............................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TAACGACGAGGACGACGTCG............................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TCGCGTTCGCATTCACACTAGA..................................................................................................................................... 22 0 2 1.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GAAAATAATTATCGATTCCAGTTAACGA........................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................TTCACACTAGATGAGTAACGGGTATC...................................................................................................................... 26 0 2 1.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................TAACGACGAGGACGACGTCGCGGA......................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TTGAAAATAATTATCGATTCCAGTTA............................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TAATTATCGATTCCAGTTAACGACGT........................................ 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TGAAAATAATTATCGATTCCAGTTAACGA........................................... 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GTCGCGGACGGAGTGCCCGAGAG.......... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
............CTCCCACACTTTGGAACAT........................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
................CACACTTTGGAACATTTTTAAAATT................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GTCGCGGACGGAGTGCCCGAGAGC......... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................CGAGGACGACGTCGCGGACGG...................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TAACGACGAGGACGACGT............................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................ACGACGAGGACGACGTCGCGGACGGA..................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TAACGACGAGGACGACGTCGCGG.......................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................CGATATCCCAAAAAGATTATAAAAT............................................................................................................................................................ 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TTCGCGTTCGCATTCACACTAGA..................................................................................................................................... 23 0 2 1.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TAACGACGAGGACGACGTCGCGGAC........................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GGACGACGTCGCGGACGGA..................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................GACGTCGCGGACGGAGTGCCCGAGAG.......... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CGCGGACGGAGTGCCAGAGAGCATA...... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GTCGCGGAAGGAGTGCCCGAGAGC......... 24 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................CGCGGACGGAGTGCCCGAG............ 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................CAGTTAACGACGAGGACGACGTCGCGGA......................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TCGATTCCAGTTAACGACGAGGACGACGT............................... 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................TTAACGACGAGGACGACGTCGCGGAC........................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CGACGAGGACGACGTCGCGGACGGAG.................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TCTTGAAAATAATTATCGATTCCAGT................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................ATTCACACTAGATGAGTAACGGGTA........................................................................................................................ 25 0 3 1.00 3 0 0 0 3 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GGAACTCGACTATAGCAGTCTCTCT................................................................................... 25 1 20 0.90 18 0 0 18 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TGAGTAACGGGTATCTGATAGTCGGGGA......................................................................................................... 28 0 20 0.85 17 0 17 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................GCATTCACACTAGATGAGTAACGG........................................................................................................................... 24 0 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................GAACTCGACTATAGCATTCTCTCTTGT................................................................................ 27 0 20 0.60 12 0 2 0 4 6 0 0 0 0 0 0 0 0
..........................................................................................................TTCACACTAGATGAGTAACGGGT......................................................................................................................... 23 0 7 0.57 4 1 0 0 1 2 0 0 0 0 0 0 0 0
..........................................................................................................TTCACACTAGATGAGTAACGG........................................................................................................................... 21 0 7 0.57 4 0 0 0 0 0 0 0 0 0 0 4 0 0
................................................................................................CGCGTTCGCATTCACACTAGATGAGT................................................................................................................................ 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TTCGCGTTCGCATTCACACTAGATGAG................................................................................................................................. 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................CGCGTTCGCATTCACACTAGA..................................................................................................................................... 21 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................CGCGTTCGCATTCACACTAGATGAGTA............................................................................................................................... 27 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TCGCGTTCGCATTCACACTAGATGAG................................................................................................................................. 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TCGCATTCACACTAGATGAGTAACGGGT......................................................................................................................... 28 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................TCGCATTCACACTAGATGAGTAACGGG.......................................................................................................................... 27 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................ATTCACACTAGATGAGTAACGGG.......................................................................................................................... 23 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................TTCGCATTCACACTAGATGAGTAACGGG.......................................................................................................................... 28 0 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................TAGATGAGTAACGGGTATCTGATAGT............................................................................................................... 26 0 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................ATTCACACTAGATGAGTAACGGGTAT....................................................................................................................... 26 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................TTCACACTAGATGAGTAACGGGTA........................................................................................................................ 24 0 7 0.29 2 0 0 0 0 0 0 2 0 0 0 0 0 0
.........................................................................................................ATTCACACTAGATGAGTATCGGGT......................................................................................................................... 24 1 8 0.25 2 0 0 0 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GACGGAGTGCCAGAGA........... 16 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................TCGCGTTCGCATTCACACTAGACT................................................................................................................................... 24 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................GATGAGTAACGGGTATCTGATAGTC.............................................................................................................. 25 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TCGCATTCACACTAGA..................................................................................................................................... 16 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................TCGCGTTCCCATTCACACTAGA..................................................................................................................................... 22 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................CGCGTTCGCATTTACTCTAGATGAG................................................................................................................................. 25 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GGAACTCGACTATAGCATTCTCTC.................................................................................... 24 0 20 0.20 4 0 0 0 0 0 0 2 0 0 2 0 0 0
................................................................................................................................................................................CGTGAGAATAATTATCGATA...................................................... 20 3 11 0.18 2 0 0 0 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CTCGACTATAGCATTCTCTCTTGTTTTC............................................................................ 28 0 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................ACTCGACTATAGCATTCTCTCTTGTTT.............................................................................. 27 0 20 0.15 3 0 2 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................TAACGGGTATCTGATAGTCGGGG.......................................................................................................... 23 0 20 0.15 3 0 0 3 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TTCACATTAGATGAGTAACGGGTATC...................................................................................................................... 26 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................GCATTCACACTAGATAAGTAACGG........................................................................................................................... 24 1 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGTTACCGACGAGGA..................................... 15 1 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................TATCATTTTTTCTCATTTTATTCCCC.............................................................................................................................................................................................. 26 2 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TGAGTAACGGGTATCTGATA................................................................................................................. 20 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CTCGACTATAGCATTCTCTCTTGTTTT............................................................................. 27 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0
.................................................................................................................................................ACTCGACTATAGCATTCTCTCTTGT................................................................................ 25 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TCGGGGAACTCGACTATAGCATTC........................................................................................ 24 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................GATGAGTAACGGGTATCTGATAGTT.............................................................................................................. 25 1 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TATAAAATTTCGCGTTCGCACT.............................................................................................................................................. 22 1 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................TCTGATAGTCGGGGAACTCGACT................................................................................................. 23 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GGAACTCGACTATAGCATTCTCTCTTGT................................................................................ 28 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.............................................................AGATCTCTGGATATCCCA........................................................................................................................................................................... 18 2 13 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................TTCACACTAGATGAGTAACGGTTAA....................................................................................................................... 25 2 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TATGAGTAACGGGTATCTGATAGTCGG............................................................................................................ 27 1 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TGAGTAACGGGTATCTGATAGTCGGGGACC....................................................................................................... 30 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................CGGGGAACTCGACTATAGCATTC........................................................................................ 23 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................GGGTATCTGATAGTCGGGGAACTC..................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................ATGAGTAACTGGTATCTGATA................................................................................................................. 21 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................TTCTCATTTTATTCCCCAATATCTAT..................................................................................................................................................................................... 26 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AGTAACGGGTATCTGATAGTCGGGG.......................................................................................................... 25 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TGATAGTCGGGGAACTCGACTATAGC............................................................................................ 26 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................GGGGAACTCGACTATAGCATTCTC...................................................................................... 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TCGACTATAGCATTCTCTCTTGT................................................................................ 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TCGGGGAACTCGACTATAGCATTCT....................................................................................... 25 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................AACGGGTATCTGATAGTCGG............................................................................................................ 20 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................AACTCGACTATAGCATTCTCTCTTGTTT.............................................................................. 28 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GGGAACTCGACTATAGCATTCTCTCT................................................................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................GGATGAGAAACGGGTATCTGAA.................................................................................................................. 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................TCGGGGAACTCGACTATAGCATTCA....................................................................................... 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CGCGGACGGAGCGGCCG.............. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................ACTCGACTATAGCATTCTCTCT................................................................................... 22 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................AACTCGACTATAGCACTCTCTCTTGT................................................................................ 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GGAACTCGACTATAGCATTCTCTCTT.................................................................................. 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TAACGGGTATCTGATAGTCGGGGAACT...................................................................................................... 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AGTAACGGGTATCTGATAGTCGGGGA......................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................CGGGTATCTGATAGTCGGGGAACTCG.................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CTCGACTATAGCATTCTCTCTTGTT............................................................................... 25 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................CACTAGAGCAGCAACGGGTA........................................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................TGAGTAACGGGTATCTGATAGTCGGGG.......................................................................................................... 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................GGGTATCTGATAGTCGGGGAACTCGACT................................................................................................. 28 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................TAACGGGTATCTGATAGTCGGGGAA........................................................................................................ 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................CGGGTATCTGATAGTCGGGGAAC....................................................................................................... 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GGAACTCGACTATAGCATTCTCTCGT.................................................................................. 26 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................TCTGATAGTCGGGGAACTCGA................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................TATCTGATAGTCGGGGAACTCGAC.................................................................................................. 24 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................GATAGTCGGGGAACTC..................................................................................................... 16 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................ATGAGTAACGGGTATCTGGA.................................................................................................................. 20 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTGAAAAACGGTGAGGGTGTGAAACCTTGTAAAAATTTTAAAAAAGAGTAAAATAAGGGGTTATAGATACCTATAGGGTTTTTCTAATATTTTAAAGCGCAAGCGTAAGTGTGATCTACTCATTGCCCATAGACTATCAGCCCCTTGAGCTGATATCGTAAGAGAGAACAAAAGTAGAACTTTTATTAATAGCTAAGGTCAATTGCTGCTCCTGCTGCAGCGCCTGCCTCACGGGCTCTCGTATATGCGA
**************************************************************************************..........((.................(((((((((...))))))))).......))********************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR902008
ovaries
 M053
female body
 M024
male body
...........................................................................................TTAAAGCGCAAGCGTAAGTGTGAT....................................................................................................................................... 24 0 20 15.20 304 70 223 0 9 0 0 0 0 2 0
...............................................................................................AGCGCAAGCGTAAGTGTGATC...................................................................................................................................... 21 0 20 8.45 169 0 0 0 0 166 1 0 2 0 0
.......................................................AGGGGTTATAGATACCTATAGGGT........................................................................................................................................................................... 24 0 4 8.25 33 11 0 5 16 0 1 0 0 0 0
.............AGGGTGTGAAACCTTGTAAAAATTTT................................................................................................................................................................................................................... 26 0 1 8.00 8 2 1 0 2 0 3 0 0 0 0
............................................AGAGTAAAATAAGGGGTTATAGATA..................................................................................................................................................................................... 25 0 20 6.50 130 0 0 23 12 61 34 0 0 0 0
........................................................................................ATTTTAAAGCGCAAGCGTAAGTGTG......................................................................................................................................... 25 0 4 3.50 14 7 1 1 5 0 0 0 0 0 0
.............................................GAGTAAAATAAGGGGTTATAGATA..................................................................................................................................................................................... 24 0 20 3.20 64 0 21 18 25 0 0 0 0 0 0
............................................................................................TAAAGCGCAAGCGTAAGTGTGATC...................................................................................................................................... 24 0 20 2.70 54 0 0 27 0 0 0 5 22 0 0
..........................................................................................TTTAAAGCGCAAGCGTAAGTGTGAT....................................................................................................................................... 25 0 20 2.35 47 9 30 0 0 0 8 0 0 0 0
................................................................................................................................................................................GGACTCTTATTAATAGCTA....................................................... 19 2 2 1.50 3 0 0 0 0 0 3 0 0 0 0
..............................................................................................................GTGATCTACTCATTGCCCATAGAC.................................................................................................................... 24 0 3 1.33 4 0 0 0 0 4 0 0 0 0 0
.........................................................................................TTTTAAAACGCAAGCGTAAGTGTGAT....................................................................................................................................... 26 1 14 1.29 18 2 10 0 0 0 6 0 0 0 0
...........................................................................................TTAAAGCGCAAGCGTAAGTGTGATC...................................................................................................................................... 25 0 20 1.15 23 2 0 0 0 0 0 0 0 18 3
............................................................................................TAAAGCGCAAGCGTAAGTGTGAT....................................................................................................................................... 23 0 20 1.15 23 4 10 0 0 0 9 0 0 0 0
......................................................................................ATATTTTAAAGCGCAAGCGTAAGTGTG......................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CAATTGCTGCTCCTGCTGCAGCGCC.......................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................AGGGTTTTTCTAATATTTTAAAGCGCA..................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............AGGGTGTGAAACCTTGTAAAAATT..................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........CGGTGAGGGTGTGAAACCTTGTAAAAATT..................................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..........................................................................AGGGTTTTTCTAATATTTTAAAG......................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............AGGGTGTGAAACCTTGTAAAAATTT.................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......ACGGTGAGGGTGTGAAAC................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...........TGAGGGTGTGAAACCTTGTAAAAATTTT................................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................TCGTAAGAGAGAACAAAATTAGAACT..................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
TTGAAAAACGGTGAGGGTGTGAAACCT............................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.............AGCGTGTGAAACCTTGTAAAAATTTTAAAAA.............................................................................................................................................................................................................. 31 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......................................................AAGGGGTTATAGATACCTATAGGGT........................................................................................................................................................................... 25 0 3 1.00 3 0 0 3 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AGCGCCTGCCTCACGGGCTCTCGTAT...... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................ATAGATAGCTATAGGGTTTTTCTAATATT............................................................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................GCAAGCGTAAGTGTGATC...................................................................................................................................... 18 0 20 1.00 20 0 0 19 0 0 1 0 0 0 0
....................................................ATAAGGGGTTATAGATA..................................................................................................................................................................................... 17 0 20 0.95 19 0 0 19 0 0 0 0 0 0 0
................................................................................................GCGCAAGCGTAAGTGTG......................................................................................................................................... 17 0 20 0.90 18 0 0 16 2 0 0 0 0 0 0
.........................................................................................TTTTAAAGCGCAAGCGTAAGTGTG......................................................................................................................................... 24 0 7 0.86 6 3 0 0 3 0 0 0 0 0 0
................................................................................................................................................................................GGACTCTTATTAATAGCT........................................................ 18 2 4 0.75 3 0 0 0 0 0 3 0 0 0 0
.........................................................................................TTTTAAAACGCAAGCGTAAGTGTG......................................................................................................................................... 24 1 17 0.71 12 9 0 0 3 0 0 0 0 0 0
........................................................................................ATTTTAAAGCGCAAGCGTAAGTGTGAT....................................................................................................................................... 27 0 3 0.67 2 2 0 0 0 0 0 0 0 0 0
...........................................................................................TTAAAGCGCAAGCGTAAGTG........................................................................................................................................... 20 0 20 0.65 13 0 0 13 0 0 0 0 0 0 0
......................................................................................ATATTTTTAAGCGCAAGCGTAAGTGTG......................................................................................................................................... 27 1 5 0.60 3 3 0 0 0 0 0 0 0 0 0
............................................................................................TAAAGCGCAAGCGTAAGTGTG......................................................................................................................................... 21 0 20 0.60 12 0 0 12 0 0 0 0 0 0 0
...........TGAGGATGTGAAACCTTGT............................................................................................................................................................................................................................ 19 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................TTAAAGCGCAAGCGTAAGTGTGATCT..................................................................................................................................... 26 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0
...................................TTTTAAAAAAGAGTAAAATAAGGGGT............................................................................................................................................................................................. 26 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................GGGACTCTTATTAATAGCTA....................................................... 20 3 8 0.50 4 0 0 0 0 0 4 0 0 0 0
.................GGTGAAACCTTCTAAAAATTT.................................................................................................................................................................................................................... 21 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0
........................................................GGGGTTATAGATACCTATAGGGT........................................................................................................................................................................... 23 0 4 0.50 2 0 0 1 0 0 0 0 0 1 0
.....................................................................................AAAATTTTAAAGCGCAAGCGTAAGTGTG......................................................................................................................................... 28 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0
...............................................GTAAAATAAGGGGTTATAGATA..................................................................................................................................................................................... 22 0 20 0.45 9 0 0 6 0 0 1 0 0 2 0
..............................................................................................AAGCGCAAGCGTAAGTGTGATC...................................................................................................................................... 22 0 20 0.40 8 0 0 0 0 0 0 0 8 0 0
.....................................TTAAAAAAGAGTAAAATAAGGGGT............................................................................................................................................................................................. 24 0 20 0.40 8 1 1 4 0 0 2 0 0 0 0
.................................................................................................CGCAAGCGTAAATGAGATCTACTCAT............................................................................................................................... 26 2 8 0.38 3 0 1 0 0 0 2 0 0 0 0
.............................................................................................................TGAGATCTACTCATTGCCCATAGACT................................................................................................................... 26 1 8 0.38 3 1 1 0 0 0 1 0 0 0 0
.............................................................................................AAAGCGCAAGCGTAAGTGTGATC...................................................................................................................................... 23 0 20 0.35 7 0 0 0 0 0 3 4 0 0 0
..........................................................................................TTTAAAGCGCAAGCGTAAGTGTGATC...................................................................................................................................... 26 0 20 0.35 7 0 0 3 0 0 0 2 0 2 0
...........................................................................................TTCAAGCGCAAGCGTAAGTGTGAT....................................................................................................................................... 24 1 20 0.35 7 4 0 0 1 0 2 0 0 0 0
.........................................AAAAGAGTAAAATAAGGGGTTATA......................................................................................................................................................................................... 24 0 20 0.35 7 0 2 1 0 0 4 0 0 0 0
................................................TAAAATAAGGGGTTATAGATA..................................................................................................................................................................................... 21 0 20 0.35 7 1 0 6 0 0 0 0 0 0 0
........................................................................................................GTAAGTGTGATCTACTCATTGCC........................................................................................................................... 23 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0
......................................................................................ATATTTTGAAGCGCAAGCATAAGTGTG......................................................................................................................................... 27 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................CGTAAGTGTGATCTACTCATTGCC........................................................................................................................... 24 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................TTTTAAAGCGCAAGCGTAAGTGTGAT....................................................................................................................................... 26 0 6 0.33 2 1 1 0 0 0 0 0 0 0 0
........................................................................................ATTTTAAAGCGCAAGCGTAAGTGTGA........................................................................................................................................ 26 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................GCGTAAGTGTGATCTACTCATTGCC........................................................................................................................... 25 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................AAGCGTAAGTGTGATCTACTCATTGCC........................................................................................................................... 27 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0
........................................................................................ATTTTGAAGCGCAAGCATAAGTGTG......................................................................................................................................... 25 2 11 0.27 3 0 0 0 3 0 0 0 0 0 0
.............................................................................................AAAGCGCAAGCGTAAATGAGATCTACTCAT............................................................................................................................... 30 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................GCAAGCGTAAGTGTGAT....................................................................................................................................... 17 0 20 0.25 5 0 0 5 0 0 0 0 0 0 0
.....................................TTAAAAAAGAGTAAAATAAGGGGTT............................................................................................................................................................................................ 25 0 20 0.25 5 0 0 3 1 0 0 0 1 0 0
....................................................................................................AAGCGTAAGTGTGATCTACTCA................................................................................................................................ 22 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................AAAGCGCAAGCGTAGGTGTGATCTACT.................................................................................................................................. 27 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................CTGCTGGAGCGCCTGGCT..................... 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................GCAAGCGTAAATGAGATCTACTCAT............................................................................................................................... 25 2 9 0.22 2 0 1 0 0 0 1 0 0 0 0
..........................................AAAGAGTAAAATAAGGGGTTATAGATA..................................................................................................................................................................................... 27 0 20 0.20 4 2 2 0 0 0 0 0 0 0 0
...........................................AAGAGTAAAATAAGGGGT............................................................................................................................................................................................. 18 0 20 0.20 4 0 0 4 0 0 0 0 0 0 0
.......................................................AGGGGTTATAGATACCT.................................................................................................................................................................................. 17 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0
......................AACCTTGTATACTTTTTAAAAAA............................................................................................................................................................................................................. 23 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0
........................................................................................ATTTTAAAGCGCAAGAGTAAGTGTG......................................................................................................................................... 25 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................AAAGCGCAAGCGTAAATGAGATCTACT.................................................................................................................................. 27 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0
..............................................................................................AAGCGCAAGCGTAAATGAGATCTACTCAT............................................................................................................................... 29 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................AATCGCAAGCGTAAGTGTGATCTA.................................................................................................................................... 24 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0
........................................................................................ATATTAAAGGGTAAGCGTAAGTGTG......................................................................................................................................... 25 3 11 0.18 2 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................AAAAGAGAACAATAGCAGAAC...................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0
.........................................................................................TTTGAAAGCGCCAGCGTAAGTGTGATC...................................................................................................................................... 27 2 6 0.17 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................GCCCCTTGAGCTGATATCGT........................................................................................... 20 0 20 0.15 3 0 0 3 0 0 0 0 0 0 0
.......................................AAAAAAGAGTAAAATAAGGGGTTATA......................................................................................................................................................................................... 26 0 20 0.15 3 0 0 0 0 0 0 0 3 0 0
................................................................................................GCGCAAGCGTAAGTGTGATC...................................................................................................................................... 20 0 20 0.15 3 0 0 0 0 0 2 1 0 0 0
...........................................................................................TTAAAGCGCAAGCGTAAG............................................................................................................................................. 18 0 20 0.15 3 0 0 3 0 0 0 0 0 0 0
.........................................................................................TTTTAAAACGCAAGCGTAAGTGTGATC...................................................................................................................................... 27 1 14 0.14 2 0 0 0 0 0 2 0 0 0 0
..............................................................ATAGATAGCTATAGGGTTTTTCTAAT.................................................................................................................................................................. 26 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0
........................................................................................ATTTTAAAGCGAAAGCGTAAGTGTG......................................................................................................................................... 25 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0
............................................................................................AAAAGCGCAAGCGTAAATGAGATCTAC................................................................................................................................... 27 3 7 0.14 1 0 0 0 0 0 1 0 0 0 0
.............................................................TATAGATACCTATAGGGT........................................................................................................................................................................... 18 0 7 0.14 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................TTTTAAAGCGCAAGCGTAGGTGTGAT....................................................................................................................................... 26 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0
..............................................................ATAGATACCTATAGGGT........................................................................................................................................................................... 17 0 8 0.13 1 0 0 1 0 0 0 0 0 0 0
................................................................AGATAGCTATAGGGTTTTTCTAAT.................................................................................................................................................................. 24 1 8 0.13 1 0 0 0 0 0 1 0 0 0 0
........................................................................................ATTTAAAAGGGCAAGCGTAAGTGTG......................................................................................................................................... 25 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................TTAAAGCGCAAGCGTAAGTGT.......................................................................................................................................... 21 0 20 0.10 2 0 0 0 1 0 1 0 0 0 0
................................................................................................................................................TTGAGCTGATATCGTAAGAGAGAA.................................................................................. 24 0 20 0.10 2 0 0 1 0 0 1 0 0 0 0
.............................................................................................AAAGCGCAAGCGTAAGTG........................................................................................................................................... 18 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
.................................................................................................................................................TGAGCTGATATCGTAAGAGAGAACAAAA............................................................................. 28 0 20 0.10 2 0 0 0 0 0 2 0 0 0 0
............................................AGAGTAAAATAAGGGGTTAT.......................................................................................................................................................................................... 20 0 20 0.10 2 1 0 0 0 0 1 0 0 0 0
.............................................................................................AAAGCGCAAGCGTAAG............................................................................................................................................. 16 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
..................................................................................................................................................GAGCTGATATCGTAAGAGAGA................................................................................... 21 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TGAGCTGATATCGTAAGAGAGAACAA............................................................................... 26 0 20 0.10 2 0 1 0 0 0 1 0 0 0 0
.........................................AAAAGAGTAAAATAAGGGGTTATAGATA..................................................................................................................................................................................... 28 0 20 0.10 2 0 0 0 1 0 1 0 0 0 0
...............................................................................................................................................CTTGAGCTGATATCGTAAGAGAGAA.................................................................................. 25 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
...............................................GTAAAATAAGGGGTT............................................................................................................................................................................................ 15 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
.........................................................................................TTTTAAAACCCAAGCGTAAGTGTG......................................................................................................................................... 24 2 20 0.10 2 0 0 0 2 0 0 0 0 0 0
.................................................................................................................................TAGACTATCAGCCCCTTGAGCTG.................................................................................................. 23 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
...........................................................................................TTCAAGCGCAAGCGTAAGTGTGATC...................................................................................................................................... 25 1 20 0.10 2 0 0 0 0 0 2 0 0 0 0
............................................................................................TCAAGCGCAAGCGTAAGTGTGAT....................................................................................................................................... 23 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0
................................................................................................GCGCAAGCGTAAGTGTGA........................................................................................................................................ 18 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
...........................................AAGAGTAAAATAAGGGGTTATA......................................................................................................................................................................................... 22 0 20 0.10 2 0 0 1 0 0 0 1 0 0 0
...........................................................................................TTAAAGCGCAAGAGTAAGTGTGAT....................................................................................................................................... 24 1 20 0.10 2 0 0 0 2 0 0 0 0 0 0
............................................AGAGTAAAATAAGGGGTTATAG........................................................................................................................................................................................ 22 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
...........................................................................................TTAAAGCGCAAGCGTAAGTGTGA........................................................................................................................................ 23 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
........................................AAAAAGAGTAAAATAAGGGGTTATAGATA..................................................................................................................................................................................... 29 0 20 0.10 2 0 0 0 0 0 2 0 0 0 0
..........................................AAAGAGTAAAATAAGGGGTTATA......................................................................................................................................................................................... 23 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0
.............................................................................................AAAGCGCAAGCGTAAGTGTGAT....................................................................................................................................... 22 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
...........................................................................................TTAAAGCGCAAGCGTTAGTGTGAT....................................................................................................................................... 24 1 20 0.10 2 0 2 0 0 0 0 0 0 0 0
...............................................................................................AGCGCAAGCGTAAGTGTGA........................................................................................................................................ 19 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
...................................................................................................CAAGCGTAAGTGTGA........................................................................................................................................ 15 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
.......................................................AGGGGTTATAGATACCTATAGGGA........................................................................................................................................................................... 24 1 10 0.10 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................GGACTCTTATTAATAGCTAT...................................................... 20 3 11 0.09 1 0 0 0 0 0 1 0 0 0 0
..............................................................................................................GAGATCTACTCATTGCCCATAGACT................................................................................................................... 25 1 11 0.09 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................TATTCAAGCGCAAGCGTAAGTGTGATC...................................................................................................................................... 27 2 11 0.09 1 0 0 0 0 0 0 0 1 0 0
........................................................................................TTTTTAAAGCGCAAGCGTAGGTGTGAT....................................................................................................................................... 27 2 15 0.07 1 0 1 0 0 0 0 0 0 0 0
........................................................................................TTTTTAAAGCGCAAGCGTAAGTGTG......................................................................................................................................... 25 1 15 0.07 1 0 0 0 1 0 0 0 0 0 0
........................................................................................TTGTTAAAGCGCAAGCGTAGGTGTGATC...................................................................................................................................... 28 3 18 0.06 1 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................AGACTATCAGCCCCTTGAGCTGATATCGT........................................................................................... 29 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.......................................AAAAAAGAGTAAAACAAGGGTTTATAGATA..................................................................................................................................................................................... 30 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
............................................AGAGTAACATAAGGGGTTATAGATA..................................................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................TTGCCCATAGACTATCAGCCCCTTGAGCT................................................................................................... 29 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................TTAAAGCGCAAGCGTAAGTGTCAT....................................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................CATAGACTATCAGCCC........................................................................................................... 16 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................TTGCCCATAGACTATCAGCCCCTT........................................................................................................ 24 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................GTAAGAGAGAACAAAA............................................................................. 16 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................GATATCGTAAGAGAGA................................................................................... 16 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................CTATCAGCCCCTTGAGCTGATATCGT........................................................................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0
....................................TTTAAAAAAGAGTAAAGTAAGGGGTTATA......................................................................................................................................................................................... 29 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.........................................................................................TTCAAAAGCGCAAGCGTAAG............................................................................................................................................. 20 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................GCCCATAGACTATCAGCCCCTTGAGC.................................................................................................... 26 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................CTCATTGCCCATAGACTATCAGCCCC.......................................................................................................... 26 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
......................................TAAAAAAGAGTAAAATAAGGGGTTA........................................................................................................................................................................................... 25 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.............................................GAGTAAAATAAGGGGT............................................................................................................................................................................................. 16 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
......................................TAAAAAAGAGTAAAATAAGGGGTTATA......................................................................................................................................................................................... 27 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0
.....................................TTAAAAAAGAGTAAAATAAGGGGTTATA......................................................................................................................................................................................... 28 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
............................................................................................TAGAGCGCAAGCGTAAGTGTGATC...................................................................................................................................... 24 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0
.........................................AAAAGAGTAAAATAAGGGGTTAT.......................................................................................................................................................................................... 23 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
............................................AGAGTAAAATAAGGGGTT............................................................................................................................................................................................ 18 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
...........................................AAGAGTAAAATAAGGGGTTATAG........................................................................................................................................................................................ 23 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................GCTGATATCGTAAGAGAGAA.................................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0
.......................................AAAAAAGAGTAAAATAAGGGGTTATAGATA..................................................................................................................................................................................... 30 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................TTTAAAGCGCAAGCGTAAGTG........................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................ATATCGTAAGAGAGAACA................................................................................ 18 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
..............................................AGTAAAATAAGGGGTTATAGATA..................................................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................ATCGTAAGAGAGAACAAA.............................................................................. 18 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
............................................................................................TAAAGCGCAGGCGTAAGTGTGATC...................................................................................................................................... 24 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.........................................AAAAGAGTAAAATAAGGGGTTATAGAT...................................................................................................................................................................................... 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................AAAGCGCAAGCGTAAGTGT.......................................................................................................................................... 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
........................................................................................ATATTATAGCGCAAACGTAAGTGTG......................................................................................................................................... 25 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
........................................AAAAAGAGTAAAATAAGGGGTTATA......................................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
................................................................................................GCGCAAGCGTAAGTGTGAT....................................................................................................................................... 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................GAGCTGATATCGTAAGAGAGAACA................................................................................ 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
......................................TAAAAAAGAGTAAAATAAGGGG.............................................................................................................................................................................................. 22 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................CGTAAGAGAGAACAA............................................................................... 15 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................CCTTGAGCTGATATCGTAAGAGAGAA.................................................................................. 26 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:3194963-3195212 - dsi_4413 AAC-----TTTT-TGCCACTCCCACACT----TTGGAAC-ATT--TT----------TAAAATTTTTTCTC-----------------ATTTTAT-------TCCCCAATATCTATGGATATCC--------------CA-----------------------------------------------------------------------AAAAGATTATAAAATTTCGCGTTCGCATTCACACTAGATGAGTAACGGGTATCTGATAGTCGGGGAACTCGACTATAGCATT-CTCTCTTGTTT--TCATCTTG----------------AAAATAATTATCGAT------------TCCAGTTAACGACGAG--GACGACGTCGCGG---ACGGAGTGCCCGAGAGCATATACGCT
droSec2 scaffold_109:38597-38846 - dse_767 AAC-----TTTT-TGCCACTCCCACACT----TTGGAAC-ATT--TT----------AAAAATTTTTTCTC-----------------ATTTTAT-------TCCCCAATATCTATCGATATCC--------------CA-----------------------------------------------------------------------AAAAGATTATAAAATTTCGCGTTCGCATTCACACTAGCTGAGTAACGGGTATCTGATAGTCGGGGAACGCGACTATAGCATT-CTCTCTTGTTT--TAATCTTA----------------AAAATAATTATCGAT------------TCCAGTTAACGACGAG--GACGACGTCGCGG---ACGGAGTGCCCGAGAGCATATACGCT
dm3 chr2L:22885933-22886139 - ATA-----TTTT-GGCCACTCCCACACT----TTTCAACAATT--TA---------TA-AATTTTTTTCTC-----------------ATTTTAC-------ACCCCAATATCTTTCGATATCC--------------CA-----------------------------------------------------------------------ATAAAATGATGAAAATTCGCGTTCGCATTCACATTAGCTGAGTAACAGGTATCTGATATTTGGGGAACTCGACTATAACATT-CTGTCTTATTT--GTATAATG--T---------AT--AATATATATACTGCC------------TTCTGTTA----------------------------------------------------
droEre2 scaffold_4770:17462752-17462953 + AAC-----TTTT-TGCCACGCCCACACT----TTTAAAAAATT--GT---------TA-A--GTTTTTCTC-----------------ATTTTATTATTTTTTTCCCAATTTCTACTGATATTC--------------CA-----------------------------------------------------------------------GAA-AATGTTGAAATTTCTTGTTTGCACTTCCACTAGCTGAGTAACGGGTATCTGATAGTCGGGGAACTCGACTATAGCATT-CTATCGTGTTG--TTCTT--A----------------TTAT-TATTATTAAG------------TTTAG-------------------------------------------------------
droYak3 v2_chrUn_322:6456-6664 + AAC-----TTTC-TGCCACGCCCACTAAAACGC-------------------------------------------------------CT------------------------ACAAACCGCC--------------AA-----------------------------------------------------------------------AAACTGTGTTTAAGACTCTCCTTCTCCCTTCCACTAGCTGAGTAACGGGTATCAGATAGTCGGGGAACTCGACTATAGCGTT-CTCTCTTGTTT--TTCTCTGAGGT----------------GA-GAAAATAAA-----TTGGC--TTCA-TTAGCTAAGAA--AA----TCCGGGA---ACAAACTGTCG-AAAGTAT-GATGCT
droEug1 scf7180000409483:21645-21794 - TTAATAT----T-T--------------------------------------------------T-----------------------------------------------------------------------------------------------------------------ATTTTTTTTATTTTTTTAAATTTTTTTAGCAAAATAATATTTTAAAATTTTG---------------TAAAACAGTAACGGGTATCTTATAGTCGCGGCACTCGACTATAGCGTT-TCCTCTTGTTT--ATACTATA----------------TACAAAAATATGCAT------------C------------------------------------------------------GCAGT
droBia1 scf7180000301511:39678-39898 - AAA-----TATT-TGCCACGCCTACTCTAACGC-------------------------------------------------------ACTCAAA-------CGGCTAAAACGCTTAAAA--CTGTTTGCCGCCCTCATGACATATACCAAAATATCCGGTAGGTAGCGCTTTAGAATATTTTTTCTTTCCGTTT-----------------------------------ACATTTTTCTCCCTCAAGCTGTGTAACGGGTATCTGATAGTCGAGGCACTCGACTATAGCGTT-CTTCCTTGTTC--ATCTT--G----------------TAATTATTTAATAAT-----------------------------------------------------------------------T
droTak1 scf7180000415786:147472-147705 + AAAATTGT-----------------------------------TTTTGA-------TA-A--GTTTTGAACAAAAGTTGAGACCGCCAC-----------------------------------------------------------------------TTGATAGCGCTGACG---ACTGCGTATCTCCATCT-----------------------------------CCCGCGCACTTCCCTTAGCTGAGTAACGGGTATCTGATAGTCGGGGCACCTGACTATAGCGTT-CTCTTTATTATACCCTTGCAG-------AGGGTATTATGAT----TTCAGTCAGAAGTTTGCAAC-------GC-----------AGTGAAGAAGACGTTTCCGACCCCAAGTATATATATTCT
droEle1 scf7180000490677:11394-11588 + AAAGAGGGTTTT-TACCGTTATCGTTAT----CCGAGAA-ATC--GC----------T-AGCTTTATTCGT-----------------AATCAGG-------TCCCCAAAATACATGGAT--CC--------------TG-AACATTTTAAAATGATCGGTCGTTTGCGCTTTTCGG----------------------------------AAGTTAATCCGAAA---------------TTTGCTAGCTGAGTAACGGGTTTCTAATAGTCAGGGAACTCGACTAAAGCATT-TCTTTTT-----------------------------------------------------------------------------------------------------------------TCTT
droRho1 scf7180000761994:30071-30294 - AAA-----TTTT-TCAAAT--------------CGGACC-ATTCGTTAAAAAGTTAT---------------------------------------------------------------------------------------------------------------GCGTGATCAAAGTTTCTATCTCCATCT-----------------------------------CCCTCGCACTCCCTTTACCTGTGTAACGGGTATCTGATAGTCGGGGCACCCGACTATAGCGTT-CTCTCTTGTTT--TAA---GG--TATACAAAATATTAAAAT----TATTATT------------TCATGTTAAACAAGAAAGGAAAGCTAACTCC---GGGCGGAGCCGAAGTTGATATACCCT
droFic1 scf7180000454076:359306-359374 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGTAACGGGTATCTGATAGTCGAGACACCCGAATATAACGTT-CTCTCCTGTTT--TCTTATGG----------------AGAAC---------------------------------------------------------------------------------A
droKik1 scf7180000302398:21240-21308 - AAAAAAAT-----------------------------------CCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATA---------------------------------------------------------------------------------------------------------AAGGGAATGGCGAG--GACGAAGAGGAGG---ACGATATGCCCAAGAGCATCTACATG
droAna3 scaffold_12929:986928-986972 - AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCGAG--GACGAT---GAGG---ATGATATGCCGCAGAGCATTTATGTT
droBip1 scf7180000395626:11309-11377 + A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGAGTACCGGGTATAATATAGTCGGGAAACTCGACTATAGCCATTCTTTTTTGTTT--CCTTT-----------------------------------------------------------------------------------------------------CTGAA
dp5 XL_group1e:525444-525491 - AAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGAT--GACAGCGATGAAG---ACGATATGCCAAAAAGCATCTACGCC
droPer2 scaffold_30:688858-688914 + ATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGGGAACGGCGAT--GACAGCGATGAAG---ACGATATGCCAAAAAGCATCTACGCC
droWil2 scf2_1100000004909:3709905-3709957 + CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGAACGGTGAG--GATGAGGAAGAAG---ATGAGGGTCCACAAAGTATTTACGCC
droVir3 scaffold_12928:260041-260094 - C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGGAACGGCGAG--GACGACGATGACG---ATCAGCTGCCGCGAAGCATTTTCGCC
droMoj3 scaffold_6328:560276-560328 + TTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGGAATGGTGAG--GATGAA---GACG---ACCAAATGCCGGTTAGCATTTTTGCG
droGri2 scaffold_15203:6724840-6724911 - CAT-----CTTCACACTATTTCGATGCT-------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGGAATGGCGAA--GATGA------GG---ATGAGCGACCGACCAGCATCTTTGCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AAC-----TTTT-TGCCACTCCCACACT----TTGGAAC-ATT--TT----------TAAAATTTTTTCTC-----------------ATTTTAT-------TCCCCAATATCTATGGATATCC--------------CA-----------------------------------------------------------------------AAAAGATTATAAAATTTCGCGTTCGCATTCACACTAGATGAGTAACGGGTATCTGATAGTCGGGGAACTCGACTATAGCATT-CTCTCTTGTTT--TCATCTTG----------------AAAATAATTATCGAT------------TCCAGTTAACGACGAG--GACGACGTCGCGG---ACGGAGTGCCCGAGAGCATATACGCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................ATTCACACTAGATGAGTAACGGGT.............................................................................................................................................................2435.0015000000111210000000
.........................................................................................................................................................................................................................................................................................................................................................T------------TCCAGTTAACGACGAG--GACGACGT..................................2513.00300000000300000000
..........................................................................................................................................................................................................................................................................................................................................................................................CGACGTCGCGG---ACGGAGTGCCCGAGA...........2613.00300100010001000000
.................................................................................................................................................................................................................................................................................................................................................................................................GCGG---ACGGAGTGCCCGAGAGCATA......2412.00200000000101000000
..............................................................................................................................................................................................................................................................................................................................................................................ACGACGAG--GACGACGTCGCGG---ACGGAG....................2712.00200000000000020000
..........................................................................................................................................................................................................................................................................................................................................................................................CGACGTCGCGG---ACGGAGTGCCCGAG............2512.00200200000000000000
..............................................................................................................................................................................................................................................TTCACACTAGATGAGTAACGGGTAT...........................................................................................................................................................2532.00600000000001041000
...................................................................................................................................................................................................................................................................................................................................................TATCGAT------------TCCAGTTAACGACGAG--GA........................................2512.00200000000200000000
................................................................................................................................................................................................................................................................................................................................................................................................CGCGG---ACGGAGTGCCCGAGA...........2012.00200200000000000000
................................................................................................................................................................................................................................................................................................................................................................................................CGCGG---ACGGAGTGCCCGAGAGCATA......2512.00200000000101000000
....................................................................................................................................................................................................................................................................TATCTGATAGTCGGGGAACTCGA.......................................................................................................................................23201.6533000000330000000000
..................................................................................................................................................................................................................................TTCGCGTTCGCATTCACACTAGATGAGTA...................................................................................................................................................................2921.50300000010200000000
...............................................................................................................................................................................................................................................................................CGGGGAACTCGACTATAGCATT-CTC.........................................................................................................................25201.4028000000000000280000
.......................................................................................................................................................................................................................................................................................TCGACTATAGCATT-CTCTCTTGTTT--TC.............................................................................................................2761.33800000044000000000
.....................................................................................................................................................................................................................................................................................................................................................................................G--GACGACGTCGCGG---ACGGAGT...................2111.00101000000000000000
............................................................................................................................................................................................................................TAAAATTTCGCGTTCGCATTCAC...............................................................................................................................................................................2351.00500005000000000000
......................................................................................................................................................................................................................................................................................................................................................................TCCAGTTAACGACGAG--GACGACGTC.................................2511.00100000000000010000
..................................................................................................................................................................................................................................................................................................................................................TTATCGAT------------TCCAGTTAACGACGAG--GA........................................2611.00100000000100000000
................................................................................................................................................................................................................................................................................................................................................................................................CGCGG---ACGGAGTGCCCGAGAGC.........2211.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................................TAATTATCGAT------------TCCAGTTAAC..................................................2111.00100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................TAACGACGAG--GACGACGTCG................................2011.00100000000001000000
...................................................................................................................................................................................................................................TCGCGTTCGCATTCACACTAGA.........................................................................................................................................................................2221.00200000020000000000
..........................................................................................................................................................................................................................................................................................................................G----------------AAAATAATTATCGAT------------TCCAGTTAACGA................................................2811.00100000010000000000
..............................................................................................................................................................................................................................................TTCACACTAGATGAGTAACGGGTATC..........................................................................................................................................................2621.00200010000001000000
............................................................................................................................................................................................................................................................................................................................................................................TAACGACGAG--GACGACGTCGCGG---A.........................2411.00100000000001000000
........................................................................................................................................................................................................................................................................................................................TTG----------------AAAATAATTATCGAT------------TCCAGTTA....................................................2611.00100000001000000000
...............................................................................................................................................................................................................................................................................................................................................TAATTATCGAT------------TCCAGTTAACGACGT.............................................2611.00100000001000000000
.........................................................................................................................................................................................................................................................................................................................TG----------------AAAATAATTATCGAT------------TCCAGTTAACGA................................................2911.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................GTCGCGG---ACGGAGTGCCCGAGAG..........2311.00101000000000000000
..................CTCCCACACT----TTGGAAC-AT........................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
......................CACACT----TTGGAAC-ATT--TT----------TAAAATT..................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................GTCGCGG---ACGGAGTGCCCGAGAGC.........2411.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................CGAG--GACGACGTCGCGG---ACGG......................2111.00100000000000010000
............................................................................................................................................................................................................................................................................................................................................................................TAACGACGAG--GACGACGT..................................1811.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................ACGACGAG--GACGACGTCGCGG---ACGGA.....................2611.00100000000000010000
............................................................................................................................................................................................................................................................................................................................................................................TAACGACGAG--GACGACGTCGCGG---..........................2311.00100000000001000000
..................................................................................................................................................................................................................................TTCGCGTTCGCATTCACACTAGA.........................................................................................................................................................................2321.00200000010001000000
............................................................................................................................................................................................................................................................................................................................................................................TAACGACGAG--GACGACGTCGCGG---AC........................2511.00100000000000010000
.....................................................................................................................................................................................................................................................................................................................................................................................G--GACGACGTCGCGG---ACGGA.....................1911.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................GACGTCGCGG---ACGGAGTGCCCGAGAG..........2611.00100000000000010000
................................................................................................................................................................................................................................................................................................................................................................................................CGCGG---ACGGAGTGCCCGAG............1911.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................................................CAGTTAACGACGAG--GACGACGTCGCGG---A.........................2811.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................TCGAT------------TCCAGTTAACGACGAG--GACGACGT..................................2911.00100010000000000000
...........................................................................................................................................................................................................................................................................................................................................................................TTAACGACGAG--GACGACGTCGCGG---AC........................2611.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................CGACGAG--GACGACGTCGCGG---ACGGAG....................2611.00100000000000010000
......................................................................................................................................................................................................................................................................................................................TCTTG----------------AAAATAATTATCGAT------------TCCAGT......................................................2611.00100000001000000000
.............................................................................................................................................................................................................................................ATTCACACTAGATGAGTAACGGGTA............................................................................................................................................................2531.00300000003000000000
.........................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGTCGGGGA.............................................................................................................................................28200.8517000000001700000000
...........................................................................................................................................................................................................................................GCATTCACACTAGATGAGTAACGG...............................................................................................................................................................2430.67200000000002000000
...................................................................................................................................................................................................................................................................................GAACTCGACTATAGCATT-CTCTCTTGT...................................................................................................................27200.601200000064200000000
..............................................................................................................................................................................................................................................TTCACACTAGATGAGTAACGGGT.............................................................................................................................................................2370.57400000021001000000
..............................................................................................................................................................................................................................................TTCACACTAGATGAGTAACGG...............................................................................................................................................................2170.57400000400000000000
....................................................................................................................................................................................................................................CGCGTTCGCATTCACACTAGATGAGT....................................................................................................................................................................2620.50100000000001000000
..................................................................................................................................................................................................................................TTCGCGTTCGCATTCACACTAGATGAG.....................................................................................................................................................................2720.50100000000001000000
....................................................................................................................................................................................................................................CGCGTTCGCATTCACACTAGA.........................................................................................................................................................................2120.50100000010000000000
....................................................................................................................................................................................................................................CGCGTTCGCATTCACACTAGATGAGTA...................................................................................................................................................................2720.50100000000100000000
...................................................................................................................................................................................................................................TCGCGTTCGCATTCACACTAGATGAG.....................................................................................................................................................................2620.50100000000001000000
.........................................................................................................................................................................................................................................TCGCATTCACACTAGATGAGTAACGGGT.............................................................................................................................................................2830.33100000001000000000
.........................................................................................................................................................................................................................................TCGCATTCACACTAGATGAGTAACGGG..............................................................................................................................................................2730.33100000000001000000
.............................................................................................................................................................................................................................................ATTCACACTAGATGAGTAACGGG..............................................................................................................................................................2330.33100000001000000000
........................................................................................................................................................................................................................................TTCGCATTCACACTAGATGAGTAACGGG..............................................................................................................................................................2830.33100000000010000000
.....................................................................................................................................................................................................................................................TAGATGAGTAACGGGTATCTGATAGT...................................................................................................................................................2630.33100000000010000000
.............................................................................................................................................................................................................................................ATTCACACTAGATGAGTAACGGGTAT...........................................................................................................................................................2630.33100000001000000000
..............................................................................................................................................................................................................................................TTCACACTAGATGAGTAACGGGTA............................................................................................................................................................2470.29200020000000000000
...................................................................................................................................................................................................................................TCGCGTTCGCATTCACACTAGACT.......................................................................................................................................................................2440.25100000000001000000
.......................................................................................................................................................................................................................................................GATGAGTAACGGGTATCTGATAGTC..................................................................................................................................................2540.25100000000001000000
.........................................................................................................................................................................................................................................TCGCATTCACACTAGA.........................................................................................................................................................................1650.20100000010000000000
..................................................................................................................................................................................................................................................................................GGAACTCGACTATAGCATT-CTCTC.......................................................................................................................24200.20400020000020000000
......................................................................................................................................................................................................................................................................................CTCGACTATAGCATT-CTCTCTTGTTT--TC.............................................................................................................2860.17100000001000000000
.....................................................................................................................................................................................................................................................................................ACTCGACTATAGCATT-CTCTCTTGTTT--...............................................................................................................27200.15300000000210000000
.............................................................................................................................................................................................................................................................TAACGGGTATCTGATAGTCGGGG..............................................................................................................................................23200.15300000000000030000
.........................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATA.....................................................................................................................................................20200.10200000000200000000
......................................................................................................................................................................................................................................................................................CTCGACTATAGCATT-CTCTCTTGTTT--T..............................................................................................................27200.10200000020000000000
.....................................................................................................................................................................................................................................................................................ACTCGACTATAGCATT-CTCTCTTGT...................................................................................................................25200.10200000000200000000
..............................................................................................................................................................................................................................................................................TCGGGGAACTCGACTATAGCATT-C...........................................................................................................................24200.10200000000000020000
.......................................................................................................................................................................................................................................................GATGAGTAACGGGTATCTGATAGTT..................................................................................................................................................25100.10100000000001000000
......................................................................................................................................................................................................................................................................TCTGATAGTCGGGGAACTCGACT.....................................................................................................................................23200.10200000000200000000
..................................................................................................................................................................................................................................................................................GGAACTCGACTATAGCATT-CTCTCTTGT...................................................................................................................28200.10200000000200000000
...............................................................................................................................................................................................................................................................................CGGGGAACTCGACTATAGCATT-C...........................................................................................................................23200.05100000001000000000
.................................................................................................................................................................................................................................................................GGGTATCTGATAGTCGGGGAACTC.........................................................................................................................................24200.05100000000001000000
..................................................................TTCTC-----------------ATTTTAT-------TCCCCAATATCTAT..............................................................................................................................................................................................................................................................................................................26200.05100000000000010000
...........................................................................................................................................................................................................................................................AGTAACGGGTATCTGATAGTCGGGG..............................................................................................................................................25200.05100000000000010000
........................................................................................................................................................................................................................................................................TGATAGTCGGGGAACTCGACTATAGC................................................................................................................................26200.05100000001000000000
................................................................................................................................................................................................................................................................................GGGGAACTCGACTATAGCATT-CTC.........................................................................................................................24200.05100000001000000000
.......................................................................................................................................................................................................................................................................................TCGACTATAGCATT-CTCTCTTGT...................................................................................................................23200.05100000000100000000
..............................................................................................................................................................................................................................................................................TCGGGGAACTCGACTATAGCATT-CT..........................................................................................................................25200.05100000000000010000
..............................................................................................................................................................................................................................................................AACGGGTATCTGATAGTCGG................................................................................................................................................20200.05100000010000000000
....................................................................................................................................................................................................................................................................................AACTCGACTATAGCATT-CTCTCTTGTTT--...............................................................................................................28200.05100000000100000000
.................................................................................................................................................................................................................................................................................GGGAACTCGACTATAGCATT-CTCTCT......................................................................................................................26200.05100000000000001000
..............................................................................................................................................................................................................................................................................TCGGGGAACTCGACTATAGCATT-CA..........................................................................................................................25200.05100000000000010000
.....................................................................................................................................................................................................................................................................................ACTCGACTATAGCATT-CTCTCT......................................................................................................................22200.05100100000000000000
..................................................................................................................................................................................................................................................................................GGAACTCGACTATAGCATT-CTCTCTT.....................................................................................................................26200.05100000000100000000
.............................................................................................................................................................................................................................................................TAACGGGTATCTGATAGTCGGGGAACT..........................................................................................................................................27200.05100000000100000000
...........................................................................................................................................................................................................................................................AGTAACGGGTATCTGATAGTCGGGGA.............................................................................................................................................26200.05100000000100000000
................................................................................................................................................................................................................................................................CGGGTATCTGATAGTCGGGGAACTCG........................................................................................................................................26200.05100000000001000000
......................................................................................................................................................................................................................................................................................CTCGACTATAGCATT-CTCTCTTGTT..................................................................................................................25200.05100100000000000000
.........................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGTCGGGG..............................................................................................................................................27200.05100000000000001000
.................................................................................................................................................................................................................................................................GGGTATCTGATAGTCGGGGAACTCGACT.....................................................................................................................................28200.05100000001000000000
.............................................................................................................................................................................................................................................................TAACGGGTATCTGATAGTCGGGGAA............................................................................................................................................25200.05100000000001000000
................................................................................................................................................................................................................................................................CGGGTATCTGATAGTCGGGGAAC...........................................................................................................................................23200.05100000000100000000
......................................................................................................................................................................................................................................................................TCTGATAGTCGGGGAACTCGA.......................................................................................................................................21200.05110000000000000000
....................................................................................................................................................................................................................................................................TATCTGATAGTCGGGGAACTCGAC......................................................................................................................................24200.05100010000000000000
.........................................................................................................................................................................................................................................................................GATAGTCGGGGAACTC.........................................................................................................................................16200.05100000001000000000
........................................................................................................................................................................................................................................................ATGAGTAACGGGTATCTGGA......................................................................................................................................................20200.05100000000000010000
droSec2
AAC-----TTTT-TGCCACTCCCACACT----TTGGAAC-ATT--TT----------AAAAATTTTTTCTC-----------------ATTTTAT-------TCCCCAATATCTATCGATATCC--------------CA-----------------------------------------------------------------------AAAAGATTATAAAATTTCGCGTTCGCATTCACACTAGCTGAGTAACGGGTATCTGATAGTCGGGGAACGCGACTATAGCATT-CTCTCTTGTTT--TAATCTTA----------------AAAATAATTATCGAT------------TCCAGTTAACGACGAG--GACGACGTCGCGG---ACGGAGTGCCCGAGAGCATATACGCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................................................................................................GTCGCGG---ACGGAGTGCCCGA.............2014.0040040
.............................................................................................................................................................................................................................................................................................................................................................................................CGTCGCGG---ACGGAGTGCCCGA.............2112.0020110
..................................................................................................................................................................................................................................................................................................................................................................................CGAG--GACGACGTCGCGG---AC........................1911.0011000
........................................................................................................................................................................................................................................................................................................................................................................................GACGACGTCGCGG---ACGGAGT...................2011.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................GACGTCGCGG---ACGGAGTGCCCGAGAGC.........2711.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................GTCGCGG---ACGGAGTGCCCGAGAGC.........2411.0010100
.............................................................................................................................................................................................................................................................................................................................................................................................CGTCGCGG---ACGGAGTGCCCGAGAGC.........2511.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................ACGGAGTGCCCGAGAGCATAT.....2111.0011000
........................................................................................................................................................................................................................................................................................................................................................AT------------TCCAGTTAACGACGAG--GAC.......................................2111.0011000
....................................................................................................................................................................................................................................................................................................................................................................................................G---ACGGAGTGCCCGAGAGCATA......2111.0011000
..........................................................................................................................................................................................................................................................................................................................................................................................CGACGTCGCGG---ACGGAGTGCCCGAGAGC.........2811.0010010
................................................................................................................................................................................................................................................................................................................................................................................................CGCGG---ACGGAGTGCCCGAGAGC.........2211.0010010
............................................................................................................................................................................................................................TAAAATTTCGCGTTCGCATTCACACT............................................................................................................................................................................2620.5011000
..............................................................................................................................................................................................................................................TTCACACTAGCTGAGTAACGGGT.............................................................................................................................................................23200.4595040
..................................................................................................................................................................................................................................................CACTAGCTGAGTAACGGGTATCTG........................................................................................................................................................24200.1533000
.............................................................................................................................................................................................................................................ATTCACACTAGCTGAGTAACGGGT.............................................................................................................................................................24200.1021001
.............................................................................................................................................................................................................................AAAATTTCGCGTTCGCATT..................................................................................................................................................................................19170.0611000
..................................................................................................................................................................................................................................TTCGCGTTCGCATTCACACTAGCTG.......................................................................................................................................................................25200.0511000
dm3
ATA-----TTTT-GGCCACTCCCACACT----TTTCAACAATT--TA---------TA-AATTTTTTTCTC-----------------ATTTTAC-------ACCCCAATATCTTTCGATATCC--------------CA-----------------------------------------------------------------------ATAAAATGATGAAAATTCGCGTTCGCATTCACATTAGCTGAGTAACAGGTATCTGATATTTGGGGAACTCGACTATAACATT-CTGTCTTATTT--GTATAATG--T---------AT--AATATATATACTGCC------------TTCTGTTA----------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................AACTCGACTATAACATT-CTGT........................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TTGGGGAACTCGACTATAACA...............................................................................................................................21132.15280000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000250001000000000000000000000000000000000000000000000000080000000000000001226000000000000000000000000100000000
..........................................................................................................................................................................................................................................................................ATATTTGGGGAACTCGACT.....................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................TCGCGTTCGCATTCACATTAGCTGAG.....................................................................................................................................................................2632.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000010002000000000000000000000000000000000000000100000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................TAGCTGAGTAACAGGTATCTGATAT....................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TGGGGAACTCGACTATAACAT..............................................................................................................................21131.77230000000000000000000000000000000000000000000000100000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000300000000000000001510004000000000000000000000000000000000000000000000000020000000000000000000000000100000000000000000110000000
..................................................................................................................................................................................................................................TTCGCGTTCGCATTCACATTAGCTGAG.....................................................................................................................................................................2731.3340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000
........................................................................................................................................................................................................................................................................TGATATTTGGGGAACTCGACT.....................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................................................................................................................TTCACATTAGCTGAGTAACAG...............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................AACTCGACTATAACATT-CTGTCTTA....................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TAAAATGATGAAAATTCGCGTTCGCATT..................................................................................................................................................................................2821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................TAAAATGATGAAAATTCGCGTTCGCA....................................................................................................................................................................................2621.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TAACAGGTATCTGATATTTGG................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................TATTTGGGGAACTCGACT.....................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TTT-GGCCACTCCCACACT----TTTCAACAAT........................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TTGGGGAACTCGACTATAAC................................................................................................................................20130.92120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200100000000000000000000000000000000000000000000000000000000000000000000100050000000000000010101000000000000000000000000000000000
...................................................................................................................................................................................................................................TCGCGTTCGCATTCACATTAGC.........................................................................................................................................................................22120.83100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000010000000000000000100000000020000001000000000000001000
..................................................................................................................................................................................................................................TTCGCGTTCGCATTCACATTAGC.........................................................................................................................................................................23120.7590000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000010000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000311000000000000000000000000000000000
..........................................................................................................................................................................................................................................CGCATTCACATTAGCTGAGTAA..................................................................................................................................................................2250.6030000000000000000000000000000000000000000000000000000000002010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................CGCGTTCGCATTCACATTAGC.........................................................................................................................................................................21120.5870000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000101000000000000000000000000000000000000100000000000000000000000000000000000000000002000000000001000000
...............................................................................................................................................................................................................................................................................TGGGGAACTCGACTATAACATT-C...........................................................................................................................23130.5470000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000300000000000000000000001000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TTGGGGAACTCGACTATAACATT-C...........................................................................................................................24130.5470000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000
................................................................................................................................................................................................................................................................................GGGGAACTCGACTATAACATT-............................................................................................................................21180.5090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000112011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................AAATTCGCGTTCGCATTCACA..............................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
..................................................................................................................................................................................................................................................CATTAGCTGAGTAACAGGTATG..........................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
..................................................................................................................................................................................................................................................................GGTATCTGATATTTGGGGAAC...........................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................CGCATTCACATTAGCTGAGTAAC.................................................................................................................................................................2350.4020000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TTGGGGAACTCGACTATAACATT-............................................................................................................................23130.3850000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001020000000100000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TGGGGAACTCGACTATAACATT-............................................................................................................................22130.3850000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000020000000000000000000000000010000000000000000000000000
......................................................................................................................................................................................................................................................................TCTGATATTTGGGGAACT..........................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...................................................................................................................................................................................................................................TCGCGTTCGCATTCACATTAG..........................................................................................................................................................................21120.3340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000010000000000200000000000000000
........................................................................................................................................................................................................................................TTCGCATTCACATTAGCTGAG.....................................................................................................................................................................2160.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................TTGGGGAACTCGACTATAACAT..............................................................................................................................22130.3140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TGGGGAACTCGACTATAAC................................................................................................................................19130.3140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................TAGCTGAGTAACAGGTATCTGATA.....................................................................................................................................................24110.2730000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................TCGCGTTCGCATTCACATTAGCT........................................................................................................................................................................23110.2730000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................TTCGCGTTCGCATTCACATTAGCTGA......................................................................................................................................................................2640.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
....................................................................................................................................................................................................................................CGCGTTCGCATTCACATTAGCTGAGC....................................................................................................................................................................2640.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................CGTTCGCATTCACATTAGCTGAG.....................................................................................................................................................................2340.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................AACATT-CTGTCTTATTT--GACA...........................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TTGGGGAACTCGACTATAACAA..............................................................................................................................22130.2330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................CGCATTCACATTAGCTGAGT....................................................................................................................................................................2050.2010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................GTTCGCATTCACATTAGCTGA......................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................TCGCATTCACATTAGCTGAGTA...................................................................................................................................................................2250.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................AAAATTCGCGTTCGCATT..................................................................................................................................................................................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TGAGTAACAGGTATCTGATA.....................................................................................................................................................20180.1730000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................TTCGCGTTCGCATTCACATTAGCTGATG....................................................................................................................................................................2860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TGGGGAACTCGACTATAACATT-CT..........................................................................................................................24130.1520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................TTCGCGTTCGCATTCACATTAGCTG.......................................................................................................................................................................25100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................TCGCGTTCGCATTCACATTAGCTG.......................................................................................................................................................................24100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................TGAGTAACAGGTATCTGAT......................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
......................................................................................................................................................................................................................................CGTTCGCATTCACATTAGCTG.......................................................................................................................................................................21110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
....................................................................................................................................................................................................................................CGCGTTCGCATTCACATTAG..........................................................................................................................................................................20120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................GCGTTCGCATTCACATTAGCT........................................................................................................................................................................21120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................TAGCTGAGTAACAGGTATCTGAT......................................................................................................................................................23120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................TTCGCGTTCGCATTCACATTAG..........................................................................................................................................................................22120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................TAGCTGAGTAACAGGTATCTG........................................................................................................................................................21120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................TTGGGGAACTCGACTATAACC...............................................................................................................................21130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TTGGGGAACTCGACTATAACATT-CT..........................................................................................................................25130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................AGCTGAGTAACAGGTATCTGAT......................................................................................................................................................22130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................CGCGTTCGCATTCACATTAGCC........................................................................................................................................................................22160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TTGGGGAACTCGACTATAACATT-CAAA........................................................................................................................27160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................CTGAGTAACAGGTATCTGA.......................................................................................................................................................19160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................................................................................................................................................TTGGGGAACTCGACTATA..................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................GGAACTCGACTATAACATT-CT..........................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................ACTCGACTATAACATT-CT..........................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AAC-----TTTT-TGCCACGCCCACACT----TTTAAAAAATT--GT---------TA-A--GTTTTTCTC-----------------ATTTTATTATTTTTTTCCCAATTTCTACTGATATTC--------------CA-----------------------------------------------------------------------GAA-AATGTTGAAATTTCTTGTTTGCACTTCCACTAGCTGAGTAACGGGTATCTGATAGTCGGGGAACTCGACTATAGCATT-CTATCGTGTTG--TTCTT--A----------------TTAT-TATTATTAAG------------TTTAG-------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................TAACGGGTATCTGATAGTCGGGGAAC...........................................................................................................................................26200.0511000000
.............................................................................................................................................................................................................................................ACTTCCACTAGCTGAGTAACGGGT.............................................................................................................................................................24200.0510000010
..............................................................................................................................................................................................................................................................AACGGGTATCTGATAGTC..................................................................................................................................................18200.0510000010
......................................................................................................................................................................................................................................................................TCTGATAGTCGGGGAACTCGACT.....................................................................................................................................23200.0511000000
..........................................................................................................................................................................................................................................TGCACTTCCACTAGCTGAGTAACGGG..............................................................................................................................................................26200.0511000000
droYak3
AAC-----TTTC-TGCCACGCCCACTAAAACGC-------------------------------------------------------CT------------------------ACAAACCGCC--------------AA-----------------------------------------------------------------------AAACTGTGTTTAAGACTCTCCTTCTCCCTTCCACTAGCTGAGTAACGGGTATCAGATAGTCGGGGAACTCGACTATAGCGTT-CTCTCTTGTTT--TTCTCTGAGGT----------------GA-GAAAATAAA-----TTGGC--TTCA-TTAGCTAAGAA--AA----TCCGGGA---ACAAACTGTCG-AAAGTAT-GATGCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................CGCC--------------AA-----------------------------------------------------------------------AAACTGTGTTTAAGACTCTCC..........................................................................................................................................................................................27200.20404000000000
...............................................................................................................................................................................................................................................................ACGGGTATCAGATAGTCGGGGAACT..........................................................................................................................................25200.15300300000000
.......................................................................................................................................................................................................................TGTGTTTAAGACTCTCCTTCTCCCTT.................................................................................................................................................................................26200.15303000000000
..........................................................................................................................................................................................................................................................GAGTAACGGGTATCAGATAGT...................................................................................................................................................21200.10202000000000
............................................................................................................................................................................................................................................................GTAACGGGTATCAGATAGTCGGGGAAC...........................................................................................................................................27200.10202000000000
........................................................................................................................................................................................................................................TTCTCCCTTCCACTAGCTGAGTAACGG...............................................................................................................................................................27200.10200000000002
.........................................................................................................................................................................................................................................................................................GACTATAGCGTT-CTCTCTTGTTT--TTC............................................................................................................26200.10202000000000
................................................................................................................................................................................................................................GACTCTCCTTCTCCCTTCCACTAGC.........................................................................................................................................................................25200.10202000000000
......................................................................................................................ACCGCC--------------AA-----------------------------------------------------------------------AAACTGTGTTTAAGACTC.............................................................................................................................................................................................26200.10200200000000
....................................................................................................................................................................................................................................................................TATCAGATAGTCGGGGAACTCGA.......................................................................................................................................23200.10200020000000
..........................................................................................................................CC--------------AA-----------------------------------------------------------------------AAACTGTGTTTAAGAC...............................................................................................................................................................................................20200.10201100000000
.........................TAAAACGC-------------------------------------------------------CT------------------------ACAAACCGCC--------------AA-----------------------------------------------------------------------AAAC...........................................................................................................................................................................................................26170.06100100000000
..C-----TTTC-TGCCACGCCCACTAAAACGC-------------------------------------------------------..........................................................................................................................................................................................................................................................................................................................................25170.06101000000000
...................................................................................................................................................................................................................................................................................................................................................................................GAA--AA----TCCGGGA---ACAAACTGTC................22180.06100100000000
.....................................................................................................................AACCGCC--------------AA-----------------------------------------------------------------------AAACTGTGTTTAAGACT..............................................................................................................................................................................................26200.05100010000000
.......................................................................................................................................................................................................................TGTGTTTAAGACTCTCCTTCTCCCTTCC...............................................................................................................................................................................28200.05100100000000
.......................................................................................................................................................................................................................TGTGTTTAAGACTCTCCTTCTCCCTC.................................................................................................................................................................................26200.05100100000000
droEug1
TTAATAT----T-T--------------------------------------------------T-----------------------------------------------------------------------------------------------------------------ATTTTTTTTATTTTTTTAAATTTTTTTAGCAAAATAATATTTTAAAATTTTG---------------TAAAACAGTAACGGGTATCTTATAGTCGCGGCACTCGACTATAGCGTT-TCCTCTTGTTT--ATACTATA----------------TACAAAAATATGCAT------------C------------------------------------------------------GCAGTSizeHit CountTotal NormTotal
No Reads
droBia1
AAA-----TATT-TGCCACGCCTACTCTAACGC-------------------------------------------------------ACTCAAA-------CGGCTAAAACGCTTAAAA--CTGTTTGCCGCCCTCATGACATATACCAAAATATCCGGTAGGTAGCGCTTTAGAATATTTTTTCTTTCCGTTT-----------------------------------ACATTTTTCTCCCTCAAGCTGTGTAACGGGTATCTGATAGTCGAGGCACTCGACTATAGCGTT-CTTCCTTGTTC--ATCTT--G----------------TAATTATTTAATAAT-----------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droTak1
AAAATTGT-----------------------------------TTTTGA-------TA-A--GTTTTGAACAAAAGTTGAGACCGCCAC-----------------------------------------------------------------------TTGATAGCGCTGACG---ACTGCGTATCTCCATCT-----------------------------------CCCGCGCACTTCCCTTAGCTGAGTAACGGGTATCTGATAGTCGGGGCACCTGACTATAGCGTT-CTCTTTATTATACCCTTGCAG-------AGGGTATTATGAT----TTCAGTCAGAAGTTTGCAAC-------GC-----------AGTGAAGAAGACGTTTCCGACCCCAAGTATATATATTCTSizeHit CountTotal NormTotal
No Reads
droEle1
AAAGAGGGTTTT-TACCGTTATCGTTAT----CCGAGAA-ATC--GC----------T-AGCTTTATTCGT-----------------AATCAGG-------TCCCCAAAATACATGGAT--CC--------------TG-AACATTTTAAAATGATCGGTCGTTTGCGCTTTTCGG----------------------------------AAGTTAATCCGAAA---------------TTTGCTAGCTGAGTAACGGGTTTCTAATAGTCAGGGAACTCGACTAAAGCATT-TCTTTTT-----------------------------------------------------------------------------------------------------------------TCTTSizeHit CountTotal NormTotal
No Reads
droRho1
AAA-----TTTT-TCAAAT--------------CGGACC-ATTCGTTAAAAAGTTAT---------------------------------------------------------------------------------------------------------------GCGTGATCAAAGTTTCTATCTCCATCT-----------------------------------CCCTCGCACTCCCTTTACCTGTGTAACGGGTATCTGATAGTCGGGGCACCCGACTATAGCGTT-CTCTCTTGTTT--TAA---GG--TATACAAAATATTAAAAT----TATTATT------------TCATGTTAAACAAGAAAGGAAAGCTAACTCC---GGGCGGAGCCGAAGTTGATATACCCTSizeHit CountTotal NormTotal
No Reads
droFic1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGTAACGGGTATCTGATAGTCGAGACACCCGAATATAACGTT-CTCTCCTGTTT--TCTTATGG----------------AGAAC---------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droKik1
AAAAAAAT-----------------------------------CCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATA---------------------------------------------------------------------------------------------------------AAGGGAATGGCGAG--GACGAAGAGGAGG---ACGATATGCCCAAGAGCATCTACATGSizeHit CountTotal NormTotal
No Reads
droAna3
AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCGAG--GACGAT---GAGG---ATGATATGCCGCAGAGCATTTATGTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................................................................................................................TATGCCGCAGAGCATTTATG..2011.001001000
.....................................................................................................................................................................................................................................................................................................................................................................................G--GACGAT---GAGG---ATGATATG..................1911.001100000
.A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCGAG--GACGAT---GAGG---AT........................2011.001000010
........................................................................................................................................................................................................................................................................................................................................................................................GACGAT---GAGG---ATGATATGCCGCA.............2311.001000010
................................................................................................................................................................................................................................................................................................................................................................................GGCGAG--GACGAT---GAGG---AT........................1811.001001000
.....................................................................................................................................................................................................................................................................................................................................................................................G--GACGAT---GAGG---ATGATAT...................1811.001000010
AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCGAG--GACGAT---GAGG---..........................1911.001000010
........................................................................................................................................................................................................................................................................................................................................................................................GACGAT---GAGG---ATGATATGCC................2011.001000001
........................................................................................................................................................................................................................................................................................................................................................................................GACGAT---GAGG---ATGATATGCCGCAGAGC.........2711.001000010
droBip1
A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGAGTACCGGGTATAATATAGTCGGGAAACTCGACTATAGCCATTCTTTTTTGTTT--CCTTT-----------------------------------------------------------------------------------------------------CTGAASizeHit CountTotal NormTotal
No Reads
dp5
AAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGAT--GACAGCGATGAAG---ACGATATGCCAAAAAGCATCTACGCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................GATGAAG---ACGATATGCCAAAAAG..........2311.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................GCGATGAAG---ACGATATGCCAAA.............2211.0010100000000
.AC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGAT--GACAGCGATGAA..............................2011.0010100000000
AAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGAT--GACAGCGATGAAG---A.........................2311.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................CAGCGATGAAG---ACGATATGCCAAAAAG..........2711.0010100000000
AAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGAT--GACAGCGAT.................................1811.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................GATGAAG---ACGATATGCCAAAAAGC.........2411.0010100000000
AAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGAT--GACAGCGATGAAG---ACGAT.....................2711.0010100000000
droPer2
ATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGGGAACGGCGAT--GACAGCGATGAAG---ACGATATGCCAAAAAGCATCTACGCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................ACGGCGAT--GACAGCGATGAAG---A.........................2211.001010000
............................................................................................................................................................................................................................................................................................................................................................................GAACGGCGAT--GACAGCGATGA...............................2111.001000001
droWil2
CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGAACGGTGAG--GATGAGGAAGAAG---ATGAGGGTCCACAAAGTATTTACGCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................................................................................................................................................AGAAG---ATGAGGGTCCACAAAGTAT.......2414.00401120
................................................................................................................................................................................................................................................................................................................................................................................................AGAAG---ATGAGGGTCCACAAAGT.........2213.00300210
...........................................................................................................................................................................................................................................................................................................................................................................GGAACGGTGAG--GATGAGGAA.................................2012.00200200
.................................................................................................................................................................................................................................................................................................................................................................................GTGAG--GATGAGGAAGAAG---ATGAGG....................2412.00200200
..........................................................................................................................................................................................................................................................................................................................................................................................TGAGGAAGAAG---ATGAGGGTCCACAAA...........2611.00100100
............................................................................................................................................................................................................................................................................................................................................................................GAACGGTGAG--GATGAGGAAG................................2011.00100100
...............................................................................................................................................................................................................................................................................................................................................................................................AAGAAG---ATGAGGGTCCACAAAGTATT......2611.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................GGAAGAAG---ATGAGGGTCCACAAAGT.........2511.00101000
...........................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGAAG---ATGAGGGT..................1811.00100100
................................................................................................................................................................................................................................................................................................................................................................................................AGAAG---ATGAGGGTCCACAAAGTA........2311.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................AAGAAG---ATGAGGGTCCACAAAG..........2211.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................GAAG---ATGAGGGTCCACAAAGTATT......2411.00100100
................................................................................................................................................................................................................................................................................................................................................................................................AGAAG---ATGAGGGTCCACAAA...........2011.00100010
.................................................................................................................................................................................................................................................................................................................................................................................GTGAG--GATGAGGAAGAAG---ATGAGGGTC.................2711.00100100
droVir3
C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGGAACGGCGAG--GACGACGATGACG---ATCAGCTGCCGCGAAGCATTTTCGCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................GACGATGACG---ATCAGCTGC.................1911.001000000000000000000000000000000000000001000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................CGATGACG---ATCAGCTGCC................1811.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................GAACGGCGAG--GACGACGATGACG---A.........................2411.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................GACG---ATCAGCTGCCGCGAAG..........2011.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................GACG---ATCAGCTGCCGCGAAGC.........2111.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................GAG--GACGACGATGACG---AT........................1830.331000000000000000001000000000000000000000000000000000000000000000
droMoj3
TTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGGAATGGTGAG--GATGAA---GACG---ACCAAATGCCGGTTAGCATTTTTGCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................G---ACCAAATGCCGGTTAGCA........1911.001100000
...........................................................................................................................................................................................................................................................................................................................................................................GGAATGGTGAG--GATGAA---GACG---AC........................2311.001100000
............................................................................................................................................................................................................................................................................................................................................................................GAATGGTGAG--GATGAA---GAC..............................1911.001000001
..............................................................................................................................................................................................................................................................................................................................................................................ATGGTGAG--GATGAA---GACG---ACCA......................2211.001100000
............................................................................................................................................................................................................................................................................................................................................................................GAATGGTGAG--GATGAA---GA...............................1811.001000001
droGri2
CAT-----CTTCACACTATTTCGATGCT-------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGGAATGGCGAA--GATGA------GG---ATGAGCGACCGACCAGCATCTTTGCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 08:52 AM