ID:

dsi_4405

 Coordinate:

2r:1091609-1091758 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.4 -7.2 -7.1

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron+
Hoyak2DNAhAT-Ac+

Sense Strand Reads

TTGCCACCCCACTCTAACGCCCACAAGCCGGCGAACACTGACACGCCCACACTTTTGCAAAATGTTTTGATTATTTTATTATCTATCGATATCCCAGAAAAATTATGAAATTTCGTCTTCGCATTCGCACTAGCTGAGCAACGGGTATCTGATAGCCGGGGAACTTGATTATAGCATTCTCCCTTGCTTTTGTATTGCAGAGCTGGTCGCCAAAGTGCGGAAAAGAGCCAAAAATCATCGACGTACCCAA
*******************************************************************************************.............((((....))))....((.((.((....)).))))..(((.(((...))).)))..****************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 M025
embryo
 M053
female body
 O001
Testis
 GSM343915
embryo
......................................................................................................................................TGAGCAACGGGTATCTGATAGCCGGG.......................................................................................... 26 0 1 34.00 34 25 0 1 4 1 2 0 0 0 0 1
.......................................................................................................................................................................................................................TGCGGAAAAGAGCCAAAAATCATCGACG....... 28 0 1 24.00 24 7 3 7 6 0 1 0 0 0 0 0
...................................................................................................................................................................................................TGCAGAGCTGGTCGCCAAAGTGCGGA............................. 26 0 1 21.00 21 7 0 2 5 6 1 0 0 0 0 0
..............................................................................................................................................................................................TGTATTGCAGAGCTGGTCGCCAAAG................................... 25 0 1 17.00 17 5 4 3 3 0 2 0 0 0 0 0
...........................................................................................................................TTCGCACTAGCTGAGCAACGGGTA....................................................................................................... 24 0 1 12.00 12 0 12 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TTGCAGAGCTGGTCGCCAAAGTGCGGA............................. 27 0 1 9.00 9 3 0 5 0 1 0 0 0 0 0 0
...........................................................................................................................TTCGCACTAGCTGAGCAACGGGTAT...................................................................................................... 25 0 1 9.00 9 0 9 0 0 0 0 0 0 0 0 0
...........................................................................................................................TTCGCACTAGCTGAGCAACGGGTATC..................................................................................................... 26 0 1 9.00 9 0 5 3 0 0 0 0 1 0 0 0
...........................................................................................TCCCAGAAAAATTATGAAATTTCGTCTT................................................................................................................................... 28 0 1 8.00 8 1 0 4 2 0 1 0 0 0 0 0
.................................................................................................................................................................................................ATTGCAGAGCTGGTCGCCAAAGTGCGGA............................. 28 0 1 7.00 7 3 0 1 2 0 1 0 0 0 0 0
............................................................................................................................................................................................TTTGTATTGCAGAGCTGGTCGCCAAAG................................... 27 0 1 7.00 7 5 0 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................TGATAGCCGGGGAACTTGATTATAGCA.......................................................................... 27 0 1 5.00 5 1 0 1 1 0 2 0 0 0 0 0
......................................................................................................................................TGAGCAACGGGTATCTGATAGCCGG........................................................................................... 25 0 1 5.00 5 0 0 0 3 1 0 0 0 1 0 0
................................................................................................................TCGTCTTCGCATTCGCACTAGCTGAGC............................................................................................................... 27 0 1 5.00 5 1 0 0 3 1 0 0 0 0 0 0
...................................................................................................................................................TCTGATAGCCGGGGAACTTGATTATAGCA.......................................................................... 29 0 1 4.00 4 2 0 0 2 0 0 0 0 0 0 0
...................................................................................................................................................TCTGATAGCCGGGGAACTTGATTAT.............................................................................. 25 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGCAGAGCTGGTCGCCAAAGTGCGGAA............................ 27 0 1 4.00 4 2 0 1 0 1 0 0 0 0 0 0
..........................................................................................................................ATTCGCACTAGCTGAGCAACGG.......................................................................................................... 22 0 1 4.00 4 0 0 2 0 0 2 0 0 0 0 0
...........................................................................................................................TTCGCACTAGCTGAGCAACGGGT........................................................................................................ 23 0 1 4.00 4 0 2 2 0 0 0 0 0 0 0 0
....CACCCCACTCTAACGCCCACAAGCCGGC.......................................................................................................................................................................................................................... 28 0 1 4.00 4 1 2 0 0 0 0 1 0 0 0 0
...........................................................................................................................TTCGCACTAGCTGAGCAACGGG......................................................................................................... 22 0 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0
......................................................................................................................................TGAGCAACGGGTATCTGATAGCC............................................................................................. 23 0 1 4.00 4 0 2 0 0 0 0 2 0 0 0 0
...................................................................................................................................................................................................TGCAGAGCTGGTCGCCAAAGTGCGGAAA........................... 28 0 1 4.00 4 0 1 1 1 1 0 0 0 0 0 0
..........................................................................................................................ATTCGCACTAGCTGAGCAACGGGT........................................................................................................ 24 0 1 4.00 4 0 0 2 1 0 1 0 0 0 0 0
..................................................................................................................................TAGCTGAGCAACGGGTATCTGATAGC.............................................................................................. 26 0 1 4.00 4 0 1 0 0 3 0 0 0 0 0 0
...........................................................................................TCCCAGAAAAATTATGAAATTTCGTC..................................................................................................................................... 26 0 1 3.00 3 2 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................AGCAACGGGTATCTGATAGCCGGG.......................................................................................... 24 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
............................................................................................CCCAGAAAAATTATGAAATTTCGTCTT................................................................................................................................... 27 0 2 3.00 6 3 0 1 2 0 0 0 0 0 0 0
.................................................................................................................................................TATCTGATAGCCGGGGAACTTGAT................................................................................. 24 0 1 3.00 3 2 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGGTCGCCAAAGTGCGGAAAAGAGC...................... 25 0 1 3.00 3 0 0 0 0 3 0 0 0 0 0 0
......................................................................................................................................TGAGCAACGGGTATCTGATAGC.............................................................................................. 22 0 1 3.00 3 0 2 0 0 1 0 0 0 0 0 0
.....................................................................................................................TTCGCATTCGCACTAGCTGAGCAACGGG......................................................................................................... 28 0 1 3.00 3 0 1 0 1 0 1 0 0 0 0 0
...........................................................................................TCCCAGAAAAATTATGAAATTTCGTCT.................................................................................................................................... 27 0 1 3.00 3 0 0 2 0 0 1 0 0 0 0 0
..........................................................................................................................ATTCGCACTAGCTGAGCAACGGG......................................................................................................... 23 0 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0
......................................TGACACGCCCACACTTTTGCAAAATGT......................................................................................................................................................................................... 27 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................TGCTTTTGTATTGCAGAGCTGGTCGCCAA..................................... 29 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTGTATTGCAGAGCTGGTCGCCAAAG................................... 26 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................TGTATTGCAGAGCTGGTCGCCAAAGT.................................. 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGCAGAGCTGGTCGCCAAAGTGCGG.............................. 25 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
......................................................................................................................................TGAGCAACGGGTATCTGATAGCCGGGG......................................................................................... 27 0 1 2.00 2 1 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................CGCCAAAGTGCGGAAAAGAGCCAAAAAT............... 28 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGGAAAAGAGCCAAAAATCATCGACGT...... 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................CATTCGCACTAGCTGAGCAACGGG......................................................................................................... 24 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0
................................................................................................................................ACTAGCTGAGCAACGGGTATCTGA.................................................................................................. 24 0 3 2.00 6 0 0 0 0 0 0 0 0 0 6 0
.TGCCACCCCACTCTAACGCCCACAAGC.............................................................................................................................................................................................................................. 27 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTTGTATTGCAGAGCTGGTCGCCAA..................................... 25 0 2 2.00 4 1 0 0 3 0 0 0 0 0 0 0
........CCACTCTAACGCCCACAAGCCGGC.......................................................................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.................................................................................................................CGTCTTCGCATTCGCACTAGCTGA................................................................................................................. 24 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................TGGTCGCCAAAGTGCGGAAAAGA........................ 23 0 1 2.00 2 0 0 0 0 1 1 0 0 0 0 0
...................................................................................................................................................TCTGATAGCCGGGGAACTTGATTATA............................................................................. 26 0 1 2.00 2 0 0 0 1 0 1 0 0 0 0 0
.................................................................................................................................................TATCTGATAGCCGGGGAACTTGATTAT.............................................................................. 27 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
...................................................................................................................................................TCTGATAGCCGGGGAACTTGATTAA.............................................................................. 25 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
....CACCCCACTCTAACGCCCACAAGCCGG........................................................................................................................................................................................................................... 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
..............................................................TGTTTTGATTATTTTATTATCTATCGA................................................................................................................................................................. 27 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0
...........................................................................................................................................................................................................TGGTCGCCAAAGTGCGGAAAAGAG....................... 24 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
............................................................................TATTATCTATCGATATCCCAGAAA...................................................................................................................................................... 24 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
.....................................................................................................................................................TGATAGCCGGGGAACTTGATTATAGC........................................................................... 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
................................................................................................GAAAAATTATGAAATTTCGTCTTCGCA............................................................................................................................... 27 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
...........................................................................................................................................................................................TTTTGTATTGCAGAGCTGGTCGCCAAA.................................... 27 0 2 1.50 3 0 1 0 2 0 0 0 0 0 0 0
.................................................................................................................................................TATCTGATAGCCGGGGAACTTGA.................................................................................. 23 0 2 1.50 3 2 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................TATTGCAGAGCTGGTCGCCAAAGTG................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................GATTATAGCATTCTCCCTTGCTTTTG.......................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................CCCAGAAAAATTATGAAATTTCGTC..................................................................................................................................... 25 0 2 1.00 2 0 0 0 0 1 1 0 0 0 0 0
......................................TGACACGCCCACACTTTTGCAAAA............................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
........CCACTCTAACGCCCACAAGCCGG........................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GGTCGCCAAAGTGCGGAAAAGAG....................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................TATTGCAGAGCTGGTCGCCAAAGTGC................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................TGAGCAACGGGTATCTGATAGCCGGT.......................................................................................... 26 1 2 1.00 2 1 0 0 1 0 0 0 0 0 0 0
......................................................TTGCAAAATGTTTTGATTATTTTA............................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................GTTTGTATTGCAGAGCTGGTCGCCAAAG................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGCAGAGCTGTTCGCCAAAGTGCGGA............................. 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................TTTTGTATTGCAGAGCTGGTCGCCA...................................... 25 0 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TATTGCAGAGCTGGTCGCCAAAGTGCGGA............................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TTGCAGAGCTGGTCGCCAAAGTGCGG.............................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
....CACCCCACTCTAACGACCACAAGCCGG........................................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................AGCCGGGGAACTTGATTATAGCATT........................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................ATCCCAGAAAAATTATGAAATTTCGTC..................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................TGAGCAACGGGTATCTGATAGCCT............................................................................................ 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................TTCGCACTAGCTGAGCAACGGGTAAT..................................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................TGAGCAACGGGTATCTGATAGCCGGGGAACT..................................................................................... 31 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................TTTGCAAAATGTTTTGATTATTTTA............................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................TCTGATAGCCGGGGAACTTGATTATAGC........................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TTGGTGCAGAGCTGGTCGCCAAAGTGCGGA............................. 30 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................TAGCCGGGGAACTTGATTATAGCAT......................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................GATAGCCGGGGAACTTGATTATAGC........................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTGTATTGCAGAGCTGGTCGCCAA..................................... 24 0 2 1.00 2 0 0 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................TATTGCAGAGCTGGTCGCCAAAGGGCGGAA............................ 30 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TAGCCGGGGAACTTGATTATAGCATTC....................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.......CCCACTCTAACGCCCACAAGCCGGCGAAC...................................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................TGAAATTTCGTCTTCGCATTCGCACTAGC.................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................CCAGAAAAATTATGAAATTTCGTCTT................................................................................................................................... 26 0 2 1.00 2 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................TATCCCAGAAAAATTATGAAATTTCGTCT.................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................CGGGGAACTTGATTATAGCATT........................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............TCTAACGCCCACAAGCCGGCGAACAC.................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGCAACGGGTATCTGATAGCCGGG.......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................ATTATGAAATTTCGTCTTCGCATT............................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............TCTAACGCCCACAAGCCGGCGAACACT................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................TAGCCGGGGAACTTGATTATAGCA.......................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TATCCCAGAAAAATTATGAAATTTCGTC..................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
............................................................................................CCCAGAAAAATTATGAAATTTCGTCT.................................................................................................................................... 26 0 2 1.00 2 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................AGTCGCACTAGCTGAGCAACGGG......................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GAGCTGGTCGCCAAAGTGCGGAAAA.......................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................CCACAAGCCGGCGAACACTGACAC.............................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGCAGAGCTGGTCGCCAAAGTGC................................ 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................TTTTGTATTGCAGAGCTGGTCGCCAAAG................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TTGCAGAGCTGGTCGCCAAAGTGCGGAA............................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................AACACTGACACGCCCACACTTTTGCAAAA............................................................................................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TATCCCAGAAAAATTATGAAATTTCGTCTT................................................................................................................................... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................ACTTGATTATAGCATTCTCCCTTGC............................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................TTTGTATTGCAGAGCTGGTCGCCAAA.................................... 26 0 2 1.00 2 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TCGCCAAAGTGCGGAA............................ 16 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................AGCTGAGCAACGGGTATCTGATAGCCGGG.......................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGCGGAAAAGAGCCAAAAATCATCG.......... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................CACAAGCCGGCGAACACTGACACGC............................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TTGCAGAGCTGGTCCCCAAAGTGCGGA............................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TCGCCAAAGTGCGGAAAAGAG....................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................TGATAGCCGGGGAACTTGATTATAGCAT......................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TCGCCAAAGTGCGGAAAAGAGCCAAAA................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GCTGGTCGCCAAAGTGCGG.............................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................TACTTTTGTATTGCAGAGCTGGTCGC........................................ 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................TCGTCTTCGCATTCGCACTAGC.................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................GCATTCGCACTAGCTGAGCAACGGG......................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................GTATCTGATAGCCGGGGAACTTGATTA............................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......CCCCACTCTAACGCCCACAAGCCGGCGA........................................................................................................................................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................TGAGCAACGGGGATCTGATAGCCGGG.......................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................TGAGCAACGGGTATCTGATAGCCG............................................................................................ 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................CGTCCTTGCTTTTGTATTGCAGAGC............................................... 25 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................ATATCCCAGAAAAATTATGAAATTTCGTCTT................................................................................................................................... 31 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................TTTGCAAAATGTTATGATTATTTTA............................................................................................................................................................................ 25 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................TAGCTGAGCAACGGGTATCTGAT................................................................................................. 23 0 4 0.75 3 0 1 0 0 1 1 0 0 0 0 0
......................................................................................CGATATCCCAGAAAAAT................................................................................................................................................... 17 0 20 0.70 14 0 0 0 0 14 0 0 0 0 0 0
...............................................................................................................................CACTAGCTGAGCAACGGGTATCTGA.................................................................................................. 25 0 3 0.67 2 0 0 0 0 2 0 0 0 0 0 0
...............................................................................................................................CACTAGCTGAGCAACGGGTATCTG................................................................................................... 24 0 3 0.67 2 0 0 0 1 1 0 0 0 0 0 0
......................................................................................CGATATCCCAGAAAAATTATGAAAT........................................................................................................................................... 25 0 20 0.60 12 0 0 1 5 5 0 0 0 1 0 0
...........................................................................................................................................................................................TTTTGTATTACAGAGCTGGTCGCCAA..................................... 26 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TGTATCGCAGAGCTGGTCGCCAAA.................................... 24 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TGTATTGCAGAGCTGGTCGCCAAA.................................... 24 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................CGGGCCAGCTGAGCAACGGGTATCTG................................................................................................... 26 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................TGTATTGCAGAGCTGGTCGCC....................................... 21 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................TGTATTGCAGAGCTGGTC.......................................... 18 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................TTGTATTGCAGAGCTGGTA.......................................... 19 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
..........................................................................TTTCTTATCTGTCGATATCCCAGA........................................................................................................................................................ 24 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTGTATTGCAGAGCTGGTCGCCAAA.................................... 25 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TTTTTGTATTGCAGAGCTGGTCACCAAAG................................... 29 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................TTTTGTATTGCAGAGCTGGTCGCC....................................... 24 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
.TGCCACGTCACTCTAACGCCCACAC................................................................................................................................................................................................................................ 25 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................TATCTGATAGCCGGGGAAC...................................................................................... 19 0 7 0.43 3 2 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................AACGGGTATCTGATAGCCGG........................................................................................... 20 0 5 0.40 2 0 0 0 0 2 0 0 0 0 0 0
..............................................................................................................................................GGGTATCTGATAGCCGGGGAAC...................................................................................... 22 0 5 0.40 2 1 0 1 0 0 0 0 0 0 0 0
......................................................................................CGATATCCCAGAAAAATTATGAA............................................................................................................................................. 23 0 20 0.35 7 0 0 0 7 0 0 0 0 0 0 0
...............................................................................................................................CACTAGCTGAGCAACGGGTA....................................................................................................... 20 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................CACTAGCTGAGCAACGGGTAT...................................................................................................... 21 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................AACGGGTATCTGATAGCCGGGGAAC...................................................................................... 25 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................CACTAGCTGAGCAACGGGTATCTGAT................................................................................................. 26 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................TAGCTGAGCAACGGGTATCTGATAG............................................................................................... 25 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................TCAGAGCTGGTCTCCAAGGTG................................. 21 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................TGAGCAACGGGTATCTGATA................................................................................................ 20 0 6 0.33 2 0 1 0 0 0 0 1 0 0 0 0
................................................................................................................................ACTAGCTGAGCAACGGGTA....................................................................................................... 19 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................TCCCAGAAAAATGCTGAAATTTCGTCT.................................................................................................................................... 27 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................CGATATCCCAGAAAAATTATGAAATT.......................................................................................................................................... 26 0 20 0.25 5 3 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................TAGCTGAGCAACGGGTATCTGATA................................................................................................ 24 0 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................CTGAGCAACGGGTATCTGATA................................................................................................ 21 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................GCTGAGCAACGGGTATCTG................................................................................................... 19 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................CACTAGCTGAGCAACGG.......................................................................................................... 17 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................AGCTGAGCAACGGGTATCTGATA................................................................................................ 23 0 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0
.......................................................................TCCTTAATTATCTATCGATATCCCAGA........................................................................................................................................................ 27 3 8 0.25 2 0 0 0 0 0 2 0 0 0 0 0
...........................................CGCCCACACTTTTGCAAAATGTTTTGA.................................................................................................................................................................................... 27 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................AACGGGCATCTGATAGCCGGGGAAC...................................................................................... 25 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................GCAGTGCTGGTCTCCAAGGTG................................. 21 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................TGAGCAACGGGTATCTGATAG............................................................................................... 21 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGGAGAGCTGGTCTCCAAGGT.................................. 21 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................GGGTATCTGATAGCCGGGGAACT..................................................................................... 23 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................TATCTGATAGCCGGGGAACT..................................................................................... 20 0 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................TGATAGCCGGGGAACT..................................................................................... 16 0 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................GTATCTGATAGCCGGGGAAC...................................................................................... 20 0 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................GCTGAGCTGGTCTCCAAGGTG................................. 21 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................CGATATCCCAGAAAAATTATGAAA............................................................................................................................................ 24 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0
...................................................................................TATCGATATCCCAGAAAAATTATGA.............................................................................................................................................. 25 0 20 0.15 3 0 0 2 0 1 0 0 0 0 0 0
..............................................................................................................................................GGGTATCTGATAGCCGGGGA........................................................................................ 20 0 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................CATCTGATAGCCGGGGAACT..................................................................................... 20 1 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................CACTAGCTGAGCAACGGGTATCTT................................................................................................... 24 1 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................TATCTATCGATATCCCAGAAAAATT.................................................................................................................................................. 25 0 20 0.10 2 0 0 1 0 0 1 0 0 0 0 0
....................................................................................ATCGATATCCCAGAAAAATTATGAA............................................................................................................................................. 25 0 20 0.10 2 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GCTGGTCTCCAAGGTGCG............................... 18 2 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................TATCTGATAGCCGGGGAA....................................................................................... 18 0 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................TATCTGATAGCCGGG.......................................................................................... 15 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................CGATATCCCAGAAAAATTTTGAAAT........................................................................................................................................... 25 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TCTGATAGCCGGGGA........................................................................................ 15 0 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGAGCTGGTCTCCAAGGT.................................. 18 2 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................TGGAGAGCTGGTCTCCAAGG................................... 20 3 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................GAGAGCTGGTCTCCAAGGTG................................. 20 3 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................TATAGCATTCTCCCTT................................................................. 16 0 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................TACTAGCTGAGCAACGGGTATCTGATA................................................................................................ 27 1 19 0.05 1 0 0 0 0 0 0 1 0 0 0 0
.................................................................................TCTATCGATATCCCAGAAAAATTATGAAA............................................................................................................................................ 29 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GCTGGTCTCCAAAGT.................................. 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................CTATATCCCAGAAAAATTATGAAATT.......................................................................................................................................... 26 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................................TATCTATCGATATCCCAGAAAAATTA................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................TCGATATCCCAGAAAAATTATGAAA............................................................................................................................................ 25 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................CGATATCCCAGAAATATTATGAACT........................................................................................................................................... 25 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................CGATATCCCAGAACAATTATGAAA............................................................................................................................................ 24 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
.................................................................................TCTATCGATATCCCAGAAAAATTATGAA............................................................................................................................................. 28 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
........CCACTCTAACGCCCACAAGCCG............................................................................................................................................................................................................................ 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................CGATATCCCAGAAAAATTATGAAATTG......................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................CACTAGAGCAGCAACGGGTA....................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
......................................................................................CGATATCGCAGAAAAATTATGAAA............................................................................................................................................ 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................ATCGATATCCCAGAAAAATTATGAAA............................................................................................................................................ 26 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

AACGGTGGGGTGAGATTGCGGGTGTTCGGCCGCTTGTGACTGTGCGGGTGTGAAAACGTTTTACAAAACTAATAAAATAATAGATAGCTATAGGGTCTTTTTAATACTTTAAAGCAGAAGCGTAAGCGTGATCGACTCGTTGCCCATAGACTATCGGCCCCTTGAACTAATATCGTAAGAGGGAACGAAAACATAACGTCTCGACCAGCGGTTTCACGCCTTTTCTCGGTTTTTAGTAGCTGCATGGGTT
******************************************************************************************.............((((....))))....((.((.((....)).))))..(((.(((...))).)))..******************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 O001
Testis
 SRR902009
testis
............................................................................................................TTAAAGCAGAAGCGTAAGCGTGATC..................................................................................................................... 25 0 1 12.00 12 5 3 0 4 0 0 0 0 0
.......................................................................ATAAAATAATAGATAGCTATAGGGT.......................................................................................................................................................... 25 0 1 10.00 10 0 0 4 3 0 3 0 0 0
......................................................................AATAAAATAATAGATAGCTATAGGGT.......................................................................................................................................................... 26 0 1 9.00 9 1 0 1 3 1 3 0 0 0
.........................................................................................................................GTAAGCGTGATCGACTCGTTGCC.......................................................................................................... 23 0 1 5.00 5 0 5 0 0 0 0 0 0 0
...........................................................................................AGGGTCTTTTTAATACTTTAAAGCAG..................................................................................................................................... 26 0 1 4.00 4 0 0 1 1 0 2 0 0 0
.........................................................................................................ACTTTAAAGCAGAAGCGTAAGCGTG........................................................................................................................ 25 0 1 4.00 4 0 2 1 0 0 1 0 0 0
.................................TTGTGACTGTGCGGGTGTGAAAACGT............................................................................................................................................................................................... 26 0 1 3.00 3 1 1 0 1 0 0 0 0 0
..................................TGTGACTGTGCGGGTGTGAAAACGT............................................................................................................................................................................................... 25 0 1 3.00 3 2 1 0 0 0 0 0 0 0
...........................................................................................................TTTAAAGCAGAAGCGTAAGCGTGATC..................................................................................................................... 26 0 1 3.00 3 3 0 0 0 0 0 0 0 0
...................................................................................................................................................AGACTATCGGCCCCTTGAACTAATAT............................................................................. 26 0 1 3.00 3 0 0 3 0 0 0 0 0 0
...........................................................................................................................AAGCGTGATCGACTCGTTGCCCAT....................................................................................................... 24 0 1 3.00 3 0 0 2 0 0 0 0 1 0
.....................................................................TAATAAAATAATAGATAGCTATAGGGT.......................................................................................................................................................... 27 0 1 3.00 3 0 0 2 1 0 0 0 0 0
...................................................................................................................AGAAGCGTAAGCGTGATCGACTCGT.............................................................................................................. 25 0 1 3.00 3 0 0 0 1 2 0 0 0 0
..............................................................................AATAGATAGCTATAGGGTCTTTT..................................................................................................................................................... 23 0 4 2.75 11 0 0 1 2 2 6 0 0 0
...............................................................................................................................................................................................................................TCTCGGTTTTTAGTAGCTGCATGGGT. 26 0 1 2.00 2 0 0 1 0 0 1 0 0 0
...........................................................................................................................................................................ATCGTAAGAGGGAACGAAAACATAACGTCT................................................. 30 0 1 2.00 2 0 0 1 1 0 0 0 0 0
............................................................................................................................................................................................................CCAGCGGTTTCACGCCTTTTCTCGGTT................... 27 0 1 2.00 2 1 0 0 0 0 0 1 0 0
......................................................................AATAAAATAATAGATAGCTATAGGTT.......................................................................................................................................................... 26 1 1 2.00 2 0 0 0 2 0 0 0 0 0
................................................................................................................AGCAGAAGCGTAAGCGTGATCGACTC................................................................................................................ 26 0 1 2.00 2 0 0 0 1 0 1 0 0 0
.........................................................................................................ACTTTAAAGCAGAAGCGTAAGCGTGAT...................................................................................................................... 27 0 1 2.00 2 0 0 0 1 0 1 0 0 0
.ACGGTGGGGTGAGATTGCGGGTGTT................................................................................................................................................................................................................................ 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0
............................................................................ATAATAGATAGCTATAGGGT.......................................................................................................................................................... 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0
............................................................................................................ATAAAGCAGAAGCGTAAGCGTGATC..................................................................................................................... 25 1 1 2.00 2 1 0 0 0 0 0 0 0 1
..........................................................................................................ATTTAAAGCAGAAGCGTAAGCGTGATC..................................................................................................................... 27 1 1 2.00 2 2 0 0 0 0 0 0 0 0
......GGGGTGAGATTGCGGGTGT................................................................................................................................................................................................................................. 19 0 1 2.00 2 0 0 0 0 2 0 0 0 0
....................................TGACTGTGCGGGTGTGAAAACGT............................................................................................................................................................................................... 23 0 1 2.00 2 0 0 0 0 1 1 0 0 0
...................................................................................................................................................................................AGGGAACGAAAACATAACGTCTCGACCA........................................... 28 0 1 2.00 2 0 0 2 0 0 0 0 0 0
.......................................................................................................................................................................................................CTCGACCAGCGGTTTCACGCCTTTTCT........................ 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0
......GGGGTGAGATTGCGGGTGTT................................................................................................................................................................................................................................ 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................AATAAAATAATAGATAGCTATAGGGTC......................................................................................................................................................... 27 0 1 2.00 2 0 0 0 0 2 0 0 0 0
........................................................................TAAAATAATAGATAGCTATAGGGT.......................................................................................................................................................... 24 0 1 2.00 2 0 0 2 0 0 0 0 0 0
.............................................................................................................................................................................................................CAGCGGTTTCACGCCTTTTCTCGGTTT.................. 27 0 1 2.00 2 0 0 1 1 0 0 0 0 0
............................................................................................................................AGCGTGATCGACTCGTTGCCCATAGACT.................................................................................................. 28 0 1 2.00 2 0 0 0 0 2 0 0 0 0
........................................................................................................................CGTAAGCGTGATCGACTCGTTGCC.......................................................................................................... 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0
...........................................................................................................................AAGCGTGATCGACTCGTTGCC.......................................................................................................... 21 0 1 2.00 2 0 1 1 0 0 0 0 0 0
...........................................................................................................................AAGCGTGATCGACTCGTTGCCCATAGACT.................................................................................................. 29 0 1 2.00 2 0 0 0 1 0 1 0 0 0
..CGGTGGGGTGAGATTGCGGGT................................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................ACTTTAAAGCAGAAGCGTAAGCGT......................................................................................................................... 24 0 1 2.00 2 0 0 0 0 0 0 1 1 0
............................................................................................................TTAAAGCAGAAGCGTAAGCGTGAT...................................................................................................................... 24 0 1 2.00 2 0 0 1 0 0 1 0 0 0
................................................................................................................AGCAGAAGCGTAAGCGTG........................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.......................GTTCGGCCGCTTGTGACTG................................................................................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................TTAAAATAATAGATAGCTATAGGGT.......................................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0
................................................................................................................................................CATAGACTATCGGCCCCTTGAACTAAT............................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0
....................................TGACTGTGCGGGTGTGAAAACGTT.............................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.............................................................TACAAAACTAATAAAATAATAGATAGC.................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................AGACTATCGGCCCCTTGAACTAATATCGT.......................................................................... 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.............................................................................................................AAAAGCAGAAGCGTAAGCGTGATC..................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 1
................................................................................................................................................................................................................................CTCGGTTTTTAGTAG........... 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................TAAGGAATTAATAGATAGCTATAGGGT.......................................................................................................................................................... 27 3 1 1.00 1 0 0 0 0 1 0 0 0 0
.........GTGAGATTGCGGGTGTTCGGCCGCTT....................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................AAAGCAGAAGCGTAAGCGTGATCGACTCGT.............................................................................................................. 30 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.AAGGTGGGGTGAGATTGCGGGTGT................................................................................................................................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................TTTAAAGCAGTAGCGTAAG............................................................................................................................ 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.ACGGTGGGGTGAGATTACGGGTGTT................................................................................................................................................................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................AAGCGTGATCGACTCGTCGCCCATAGACT.................................................................................................. 29 1 1 1.00 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................................ATCGGCCCCTTGAACTAATATCGTAA........................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................AAAATAATAGATAGCTATAGGGTCTT....................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0
............................GCCGCTTGTGACTGTGCGGGTGT....................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................AATAGATAGCTATAGGGTCTTTTTAAT................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................TTCACGCCTTTTCTCGGTTTTTAGT............. 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0
.....................................GACTGTGCGGGTGTGAAAACGT............................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CAGCGGTTTCACGCCTTTTCTCGG..................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0
....................................TGACTGTGCGGGTGTGAAAACGTTT............................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................TTGTGACTATGCGGGTGTGAAAACGT............................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
....................GGTGTTCGGCCGCTTGTGACTATGCG............................................................................................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................AAGCGTAAGCGTGATCGACTCGTTGCC.......................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....GTGGGGTGAGATTGCGGGTGTT................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................CGACACGTTGCCCATAGACTATCGGC............................................................................................ 26 1 1 1.00 1 0 0 0 0 0 0 0 0 1
.....................................................................................................................AAGCGTAAGCGTGATCGACTCGT.............................................................................................................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................AAGAGGGAACGAAAACATAACGTCT................................................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................................................................................................................AAGACTATCGGCCCCTCGAACTAATAT............................................................................. 27 2 1 1.00 1 0 0 0 1 0 0 0 0 0
................................CTTGTGACTGTGCGGGT......................................................................................................................................................................................................... 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GGTTTTTAGTAGCTGCATGGGT. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................TCGGCCGCTTGTGACTGTGCGGGT......................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.........................................................................................................ACTTTAAAGCAGAAGCGTAAGCG.......................................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0
......................................................................AATAAGATAATAGATAGCTATAGGGT.......................................................................................................................................................... 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0
.......................................................................................................ATACTTTAAAGCAGAAGCGTAAGCGTG........................................................................................................................ 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...............TTGCGGGTGTTCGGCCGCTTGTGACT................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.....TGGGGTGAGATTGCGGGTGT................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................TTCGGCCGCTTGTGACTATGCG............................................................................................................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AACGTCTCGACCAGCGGTTTCACGCCT............................. 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0
...................................................................................................................................................AGACTATCGGCCCCTTGAACTAATATCG........................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................AATAAGAGGGAACGAAAACAT........................................................ 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................GCGTAAGCGTGATCGACTCGT.............................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
AACGGTGGGGTGAGATTGCGGGT................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TCGGTTTTTAGTAGCTGCATGGGG. 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0
AACGGTGGGGTGAGATTGCGGGTGTT................................................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GAACGAAAACATAACGTCT................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0
..................................TGTGACTATGCGGGTGTGAAAACG................................................................................................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CACGCCTTTTCTCGGTTTTTAGTAGC.......... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1
...........................................................................................................................................................................ATCGTAAGAGGGAACGAAAACATAACGT................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................ATCGTAAGAGGGAACGAAAACAT........................................................ 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................CGGCCCCTTGAACTAATATCGT.......................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...................................................................................................................................................AGACTATCGGCCCCTTGAACTAAT............................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................CGACCAGCGGTTTCACGCCTTTTCT........................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................TCGGCCCCTTGAACTAATATC............................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................TGAAAACGTTTTACAAAACTAAT................................................................................................................................................................................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................CGTAAGAGGGAACGAAAACATAACGTCT................................................. 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.....TGGGGTGAGATTGCGGGTGTTCG.............................................................................................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................CTTTAAAGCAGAAGCGTAAGCGTGATC..................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................TAAAGCAGAAGCGTAAGCGTGATC..................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................TTGTGACTGTGCGGGTGTGAAA................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................TTAAAGCAGAAGCGTAAGCG.......................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................AGGGAACGAAAACATAACGTC.................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................AAAGCGTGATCGACTCGTTGCCCAT....................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................TTTCGGCCGCTTGTGACTATGCG............................................................................................................................................................................................................ 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................TAAAAGCAGAAGCGTAAGCGTGATC..................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................AAAGCAGAAGCGTAAGCGTGATCGACT................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................CACAGAAGCGTAAGCGTGATCGACT................................................................................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................TGACTGTGCGGGTGTGAAAACGTTTT............................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0
............................................................................................................................AGCGTGATCGACTCGTTGCC.......................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................GGCCCCTTGAACTAATAT............................................................................. 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0
....................................................................................................TTAATACTTTAAAGCAGAAGCGTAAGCGT......................................................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................................................................................................................................CTTGAACTAATATCGTAAGAGGGA.................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................AGCAGAAGCGTAAGCGTGAT...................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.ACGGTGGGGTGAGATTGCGGGTGT................................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................ATAAAATAATAGATAGCTATAGGGTCT........................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.....................................................................................................AAATACTTTAAAGCAGAAGCGTAAGCGTG........................................................................................................................ 29 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................GTGACTGTGCGGGTGTGAAAACGT............................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................CGGGTGTTCGGCCGCTTGTGACTAT............................................................................................................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................GATCGACTCGTTGCCCATAGACT.................................................................................................. 23 0 3 0.67 2 0 0 0 0 1 1 0 0 0
..........................................................................................................ATTTAAAGCAGAAGCGTAAGCGT......................................................................................................................... 23 1 2 0.50 1 0 0 0 0 0 0 0 0 1
.....................................................................................................................AAGCGTAAGCGTGATCGACTC................................................................................................................ 21 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.............................................................................TAATAGATAGCTATAGGGTCTTTT..................................................................................................................................................... 24 0 4 0.50 2 0 0 0 0 2 0 0 0 0
.............................................................................TAATAGATAGCTATAGGGTCTTTTT.................................................................................................................................................... 25 0 2 0.50 1 0 0 0 0 1 0 0 0 0
....................................................................................................................GAAGCGTAAGCGTGATCGACT................................................................................................................. 21 0 2 0.50 1 0 1 0 0 0 0 0 0 0
.................................................GTGAAAACGTTTTACAACTATAATAA............................................................................................................................................................................... 26 3 2 0.50 1 0 0 0 0 0 1 0 0 0
......................................................................AAGGAATTAATAGATAGCTATAGGGT.......................................................................................................................................................... 26 3 4 0.50 2 1 0 0 0 0 1 0 0 0
.................................................GTGAAAACGTTTTACAAGACTAA.................................................................................................................................................................................. 23 1 2 0.50 1 0 0 0 0 0 1 0 0 0
.................................AAGTGACTATGCGGGTGTGAAAACGT............................................................................................................................................................................................... 26 3 2 0.50 1 1 0 0 0 0 0 0 0 0
..............................................................................AATAGATAGCTATAGGGTCTTTTT.................................................................................................................................................... 24 0 2 0.50 1 0 0 1 0 0 0 0 0 0
....................................................................................TAGCTATAGGGTCTTTTTAATACT.............................................................................................................................................. 24 0 20 0.35 7 0 0 0 0 4 2 1 0 0
................................................................................................................................TGATCGACTCGTTGCCCATAGACT.................................................................................................. 24 0 3 0.33 1 0 0 0 1 0 0 0 0 0
...........................................................................................AGGGTCTTTTTAATACTTTAAAGCA...................................................................................................................................... 25 0 3 0.33 1 0 0 0 0 1 0 0 0 0
..TTGTGGGGTGAGATTGCGGGTGT................................................................................................................................................................................................................................. 23 2 3 0.33 1 1 0 0 0 0 0 0 0 0
..............................................................................AATAGCTAGCTATAGGGTCCTTTTAAT................................................................................................................................................. 27 2 3 0.33 1 0 0 1 0 0 0 0 0 0
..............................................................................AATAGATAGCTATAGGGTCTTT...................................................................................................................................................... 22 0 6 0.33 2 0 0 0 0 1 1 0 0 0
.................................................................................AGATAGCTATAGGGTCTTTTTAAT................................................................................................................................................. 24 0 20 0.30 6 0 0 0 2 0 3 1 0 0
.......................................................................AGGAATTAATAGATAGCTATAGGGT.......................................................................................................................................................... 25 3 8 0.25 2 0 0 0 0 0 2 0 0 0
............................................CGGGTGTGAAAACGTTTTACAAAACT.................................................................................................................................................................................... 26 0 4 0.25 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................ATCGACTCGTTGCCCA........................................................................................................ 16 0 4 0.25 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................CGACTCGTTGCCCATAGACTAT................................................................................................ 22 0 4 0.25 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................CATAGACTATCGGCCCC......................................................................................... 17 0 9 0.22 2 0 2 0 0 0 0 0 0 0
.........................................GTGCGGGTGTGAAAACGTTTTACAA........................................................................................................................................................................................ 25 0 7 0.14 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................CGTTGCCCATAGACTA................................................................................................. 16 0 8 0.13 1 0 1 0 0 0 0 0 0 0
.......................................................................AGGAATTAATAGATAGCTATAGGGTCT........................................................................................................................................................ 27 3 8 0.13 1 0 0 0 0 0 1 0 0 0
................................................................................................................................................CATAGACTATCGGCCC.......................................................................................... 16 0 9 0.11 1 0 0 1 0 0 0 0 0 0
..............................................................................AATAGATAGCTATAGGGTCTTCT..................................................................................................................................................... 23 1 9 0.11 1 0 0 0 0 1 0 0 0 0
...GGCGGGGTGAGATTG........................................................................................................................................................................................................................................ 15 1 9 0.11 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................GTTGCCCATAGACTAT................................................................................................ 16 0 9 0.11 1 0 1 0 0 0 0 0 0 0
................................................................................TAGATAGCTATAGGGTCTTTTTAAT................................................................................................................................................. 25 0 20 0.10 2 0 0 0 0 2 0 0 0 0
.....................................................................................AGCTATAGGGTCTTTTTAATACT.............................................................................................................................................. 23 0 20 0.10 2 0 0 0 0 2 0 0 0 0
.............................................GGGTGTGAAAACGTTTTATAAAACT.................................................................................................................................................................................... 25 1 10 0.10 1 0 0 0 0 0 0 1 0 0
...................................................................................................................................TCGACTCGATGCCCA........................................................................................................ 15 1 13 0.08 1 0 0 0 0 1 0 0 0 0
............................................CGGGTGTGAAAACGTTT............................................................................................................................................................................................. 17 0 15 0.07 1 0 1 0 0 0 0 0 0 0
............................................CGGGTGTGAAAACGTT.............................................................................................................................................................................................. 16 0 16 0.06 1 0 1 0 0 0 0 0 0 0
................................................TGTGAAAACGTTTTACAAAA...................................................................................................................................................................................... 20 0 19 0.05 1 0 1 0 0 0 0 0 0 0
..........................................................................................TAGGGTCTTTTTAATA................................................................................................................................................ 16 0 20 0.05 1 0 1 0 0 0 0 0 0 0
.................................................................................AGAGAGCTATAGGGTCTTTTTAAT................................................................................................................................................. 24 1 20 0.05 1 0 0 0 1 0 0 0 0 0
...............................................................................ATAGATAGCTATAGGGTCTTCTTAAT................................................................................................................................................. 26 1 20 0.05 1 0 0 0 0 1 0 0 0 0
.....................................................................................AGCTATAGGGTCTTTTTAAT................................................................................................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 1 0 0
................................................TGTGAAAACGTTTTA........................................................................................................................................................................................... 15 0 20 0.05 1 0 1 0 0 0 0 0 0 0
...................................................................................ATAGCTATAGGGTCTTTTTAATACT.............................................................................................................................................. 25 0 20 0.05 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................ATGATCGACTCGTTGCCCATAGACT.................................................................................................. 25 1 20 0.05 1 0 0 0 0 1 0 0 0 0
...................................................................................................................................TCGACTCGATGCCCATG...................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0
....................................................................................TTGCTATAGGGTCTTTTTAATACTT............................................................................................................................................. 25 1 20 0.05 1 0 0 0 0 1 0 0 0 0
..........TGAGATTGCGGGTGTTCGGC............................................................................................................................................................................................................................ 20 0 20 0.05 1 0 0 0 0 0 1 0 0 0
...............................................................................ATAGATAGCTATAGGGTCTTTTTAAT................................................................................................................................................. 26 0 20 0.05 1 0 0 0 1 0 0 0 0 0
.................................................................................AGATAGCTATAGGGTCTTTTTAATACT.............................................................................................................................................. 27 0 20 0.05 1 0 0 1 0 0 0 0 0 0
...................................................................................................................CGAAGCGTAAACGTGAT...................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0
......................................................................................GCTATAGGGTCTTTTTAATACTT............................................................................................................................................. 23 0 20 0.05 1 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:1091559-1091808 + dsi_4405 TTG--------------CCA-C----CCCACTCT-AACGCC-CACAA-GCCGGC-GAACACTGACACG--------------------------------------------------------------------CCCACACTTT------T-----------GCAAAATGTTTTG---------------------------------------A-------------TT-------ATTTT-----------------ATTATCT--------------ATCGATATCCCAGAAAAATTATG-AAATTT-------------------------CGT------CTTCGCATTCGCACTAGCTGAGCAACGGGTATCTGATAGCCGGGGA-ACTTGATTATAGCAT-TCTCCCTTGCTTTTGTA---------------T---T-----GCAGAGCTGGTC---GCCAAAGTG---C---GGAAAA--GAG-------CCAAAAATCATC--GACGTACCCAA
droSec2 scaffold_8:3338156-3338405 - TTG--------------CCA-C----CCCACTCT-AACGCC-CACAA-GCCGGC-GAACACTGACACG--------------------------------------------------------------------CCCACACTTT------T-----------GCAAAATGTTTTG---------------------------------------A-------------TT-------ATTTT-----------------ATTATCT--------------ATCGATATCCCAGAAAAATTATG-AAATTT-------------------------CGT------CTTCGCATTCGCACTTGCTGAGCAACGGGTATCTGATAGCCGGGGA-ACTTGATTATAGCAT-TCTCCCTTGCTTTTGTA---------------T---T-----GCAGAGCTGGTC---GCCAAAGTG---C---GGAAAA--GAG-------CCAAAAATCATC--GACGTACCCAA
dm3 chr3L:17852302-17852559 + TCG--------------ACCAGG---CCCCTCCC-TACACC-TACAA-AACGAC-CAAAAC------GTTCACTTTTAAACAATTTTTAAGTT--TTTCC---------------------------------------------------------------------------------------------------------TCATTTTGTTCTCCAATA--------------------------------------------------------TCTATCGATATCCCAGAAAAATTATG-AATTTT-------------------------CGC------CTTCGCATTCACACTAGCTGAGTAAAGGATATTTGATAGTCGGGGA-ATTCGGCTATAGTAT-TCTCTCTTGTTTTTGTA---------------T---T-----GCAGAGCTGGTC---ACCAAAGTG---C---GGAAAA--GAT-------CCAAAAATCATT--GACGTACCCAA
droEre2 scaffold_4644:32054-32316 - TTG--------------CCA-CG---CCCTTTCT-AACGCA-CACAA-ACCCTCGCAAAACTGTCACG--------------------------------------------------------------------CTCACACTT-------------------C-AAGTTTTTTTA---------------------------------------A-----------------------TTTT-----------------AATTTTTTTCCCCCAATTTCTACTGATATC-CAGATAA-TGTTG-AAATTT-------------------------CTC------GTTCGCACTTCCACTAGGTGAGTAACGGGTATCTGAT--TCGGGGA-ACTCGTCTATAGCAT-TCTCATGAAT-TATGTA---------------T---TTACGGGCAAAGC-GGAA---GCCACAGCAAAAC----GAAAATAGCT-------TCAATAAACCTA--ACTGAACTAGA
droYak3 v2_chr3L_random_297:1026-1277 - TTG--------------ACA-CG---TCCACTCC-AACTCC-CACAA-ACAGTC-CAAAACTAACACG--------------------------------------------------------------------TACAAATTT-------------------GTATTATTTTTTG------------------------------------------------------T-------ATTTT-----------------AATATCTATTCCCCAATTTCTACCGATATTGCAGAAAA-TGTTA-CAATTT-------------------------CTT------ATTTGTAATTTTACTACCTGAGTAACGGGTATCTGATAGTCGGGGA-ACTCGACTATAAAAT-TCTCTTTTGTTTTTTTA---------------A---T-----GAAGTT-TTGTG---GCCATTTTG---G---CGACAG--GTG-------CCAAAAG----T--GCCGTACC---
droEug1 scf7180000405203:874-1110 - CTG--------------CCA-CG---CCCACTCT-AACGCC-CACAA-ACCGCG-GAAAAC---CACG--------------------------------------------------------------------TTTGACCTTG------T-----------ATAACACATTTTG---------------------------------------ATCAATATCTATGGGAATTTCCA-----CTAGCAAAATGTATATTTTTAAGT----------------------------------------------------------------------------------------TGTGTAAAAAAGTAACGGGTATCTTATGATCGCAGC-ACTCGATTATAGCGT-TTCCGCTTGTTTGTATT--------------GTGATT-GTTGGCA--GCATGTCTCTGCCAAAAAG---CAGCTGAAAA--GAG-------ACCAAA---------------CCCA
droBia1 scf7180000302291:1515041-1515280 + TTG--------------CCA-CG---CTCATATT-AACGCC-TACAA-ATGGCC-AAACGTTTAAAT------------C---------------TTTCT--------------------------------GCCGCCCACATTA-------------------C-C-----------ATATTTT--------AAAATAGTGGATAGGTGGCGC---------------------------------------------------------------------------------------TATA-CAATATCGCTTTGCTGCTTATATATCTCCACTT--------------CTCTTTAAAGCTGAGTAACGGGTATCTGATAGTCGAGGC-ACTCGACTATAGCGT-TCTTTCTTGTTTTAATA--------------ATAA-----------TCATAGTC---GTGGATGAA---C---ATAAAA--AAA-------ACAAGA------------------A
droTak1 scf7180000415904:6382-6657 - TTTGTTTCAAAAGGGTGCCA-CG---CCCCCTCG-AACGCT-CACAA-TCG---------------------CTTATATACGATTTTAAAAA-TT--------------------------------------------------------------------------------TCAATATTTCGGAAAAGTAAAAATGCAGTTTTGTGGTGTTTATCAATA--------------------------------------------------------CCTATCGAAATT-----------------------------------TTTTTTTCCATCTC------CTTCGCACTCCCTTTAGCTGAGTAACGGGTATCTGATAGCCAGGGC-ACCCGACTATAGCGT-TCTCTCTTGTTTAGG-A---------------A---T-----GCAGAGATGAA------TTGAGAG---T---AAAGTA--GAGTAGAGAGTA---AATTATTAAGATAAGTCAAA
droEle1 scf7180000490971:430634-430828 - CTA--------------ACA-AATCACTAAAATCTGC-CGCGT---A------------ACTCTGA--------------CACTTATTGAACC--TTTGTCAATGCCGTTCTTTAATTAACGCCAACTAAGC----CCC-------------------------------------G---------------------------------------A-------------TT-------GTTTTCTGGAATAATATATATTTTTAAAT----------------------------------------------------------------------------------------TTGTTAGCCAAATAACGGGTGTCGAATAGTCGGGGA-ATGCGATTGTAGCGT-TCTCTCTTGTTTTTTTA--------------AT---T-----GCA-----------------------------------------------------------------------
droRho1 scf7180000759879:344-620 + TCA------AAAAGGTGCCA-CG---CCCCCTTT-AACGCC-CACAA-TCG---------------------CTTATATACGATTTTAAAAA-TT--------------------------------------------------------------------------------TAAATATTTCGGA-AAGTAAAAATGCAGTTTTATTGTGTTTATCAATA--------------------------------------------------------CCTATCGAA---------------TATCAAT---------------ATCCATCTCCATCTC------CCTCGCACTCCCTTTACCTGAGTAACGGGTATCTGATAGTCGGGGC-ACCCGACTATAACGT-TCTCTCTTGTTATACCCTTGCAGAGGGTATTATAA-----------TTTTGGTC---A--AAAGTG---T---GCAACG--CAG-------TGAAGGA-------GACATCTCCGA
droFic1 scf7180000454107:1464736-1464840 + GTG--------------CCA-CG---CCCACTCT-TATACC-CGAAA-ACCAAA-CATTTCTGCGGCG--------------------------------------------------------------------CTCACTTGTT------T-----------C-AAAA------------------------------------------------------------------------------TTTCGTTTACATTTTTGGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGATT---ACAAAAACG---C---AAAAAA------------------------------------A
droKik1 scf7180000302810:639097-639161 - TCC--------------ACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTTTTTGCA---------------T---T-----TCAAAGCTGGTA---ACTCAAGGG---T---TAAATA--GGG-------TAAATAAGTATG----------AAA
droAna3 scaffold_13417:2342281-2342330 - ACG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATGAGTACCGGGTATCATATAGTCGCGGA-ACTCCCCTATAACGC-T-------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396270:29573-29753 - TTG--------------TTT-CG---TGAATTTCTGA-AGCGC---AAATACTG-GAAG--------G-------------------------------------------------------------------------TTTTC------TGAAAAAC----------TTTTTTG---------------------------------------A-------------AA-------ACTTG-----------------GTTTTTT-------AATGTTT---------------AAACTTTAAAGGTTA-------------------------GTT------AAATGTAGGTGGAAGAGATGAGAACCGGGTATAATATAGTCGGAAA-ACTCGACTATAGCCGTCCTTTCTTGTTCCTCCA---------------T---T-----GTA-----------------------------------------------------------------------
dp5 Unknown_group_221:35556-35645 + TCG--------------CCT-CG---CCCACTTCCGC-CCC---CCA-AAGGAC-GAAAAGGAGAATA--------------------------------------------------------------------ACCATATCTTCTAGACT-----------GCAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CTGAATTTGATCGTATT--------------ATTAT--------------------------------------------------------------------------------
droPer2 scaffold_16:85721-85810 + TCG--------------CCT-CG---CCCACTTCCGC-CCC---CCA-AAAGAC-GAAAAGGAGAATA--------------------------------------------------------------------ACCATATCTTCTAGACT-----------GCAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CTGAATTTGATCGTATT--------------ATTAT--------------------------------------------------------------------------------
droWil2 scf2_1100000004902:2691942-2692035 + TAG--------------CTC-------CCATACA-AAC--C--GCAA-AGTCAC-GAACAGTGAC----------------------------------------------------------------------------TTTTC------TCAATAAC--------------TTC---------------------------------------A-------------TT-------ATTTT-----------------CTGAGCT--------------ATTGTTGT--CAAAATATTTATG-AATTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12954:320165-320309 + ACG--------------TTT-TT---------------------------------------------------------------------------------------------------------------------------------------------ATAAGGTTGTTAC---------------------------------------C-------------TT-------CTATT-----------------ATTATTT--------------CTCTAT------------TGATG-CAATAT-------------------------TGTCTCAAAAGTGTTTTGGGTAGGTTCCAAGTAATGAGCATTTTAGGCTAGATGT-AATTGATTTCAACAT-TTTTTCTTGTTTTTGTA---------------T---A-----ACA-----------------------------------------------------------------------
droMoj3 scaffold_6540:15119325-15119503 + ATA--------------TTA-TT---CGA-------------------------------------------------------------------------------------------------------------------------------TAACTTATTCGATATTTTTTT---------------------------------------ATCGAAGATAATCGATAAATTGA-----TTAGCAGAACGTGTGTTTTTGTAT----------GTGG-------------GTAC-AA-TAGAAGTG----------------------CAAAATG------ATTAGCATATCAGCTGGCAGAGTGCAGGGTATCTCCTAGTCGAGCAGTCGCGACTAAAACAC-TCTTCTTTGTTTT-------------------------------------------------------------------------------------------------------
droGri2 scaffold_1292:850-941 + TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGAGTTTAGGGTACATTGTAGTCGAGCTCACTTGACTATGGCAT-TCTTACTTGTTTTTTTT--------------TTTTTTTGCTTGTAAAACTGGTT---GACA-------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTG--------------CCA-C----CCCACTCT-AACGCC-CACAA-GCCGGC-GAACACTGACACG--------------------------------------------------------------------CCCACACTTT------T-----------GCAAAATGTTTTG---------------------------------------A-------------TT-------ATTTT-----------------ATTATCT--------------ATCGATATCCCAGAAAAATTATG-AAATTT-------------------------CGT------CTTCGCATTCGCACTAGCTGAGCAACGGGTATCTGATAGCCGGGGA-ACTTGATTATAGCAT-TCTCCCTTGCTTTTGTA---------------T---T-----GCAGAGCTGGTC---GCCAAAGTG---C---GGAAAA--GAG-------CCAAAAATCATC--GACGTACCCAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................TGAGCAACGGGTATCTGATAGCCGGG.......................................................................................................................................26134.0034000000251421100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---C---GGAAAA--GAG-------CCAAAAATCATC--GACG.......28124.002400000077610030000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----GCAGAGCTGGTC---GCCAAAGTG---C---GGA........................................26121.002100000072516000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TGTA---------------T---T-----GCAGAGCTGGTC---GCCAAAG....................................................25117.001700000053320040000
.................................................................................................................................................................................................................................................................................................................................................................TTCGCACTAGCTGAGCAACGGGTA....................................................................................................................................................24112.0012000000000000120000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................T---T-----GCAGAGCTGGTC---GCCAAAGTG---C---GGA........................................2719.00900000035001000000
.................................................................................................................................................................................................................................................................................................................................................................TTCGCACTAGCTGAGCAACGGGTAT...................................................................................................................................................2519.00900000000000090000
.................................................................................................................................................................................................................................................................................................................................................................TTCGCACTAGCTGAGCAACGGGTATC..................................................................................................................................................2619.00900100003000050000
.................................................................................................................................................................................................................................................................................................TCCCAGAAAAATTATG-AAATTT-------------------------CGT------CTT................................................................................................................................................................................2818.00800000014210000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------T---T-----GCAGAGCTGGTC---GCCAAAGTG---C---GGA........................................2817.00700000031210000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTA---------------T---T-----GCAGAGCTGGTC---GCCAAAG....................................................2717.00700000051100000000
...........................................................................................................................................................................................................................................................................................................................................................................................TGATAGCCGGGGA-ACTTGATTATAGCA......................................................................................................................2715.00500000011120000000
............................................................................................................................................................................................................................................................................................................................................................................TGAGCAACGGGTATCTGATAGCCGG........................................................................................................................................2515.00500010000301000000
.......................................................................................................................................................................................................................................................................................................................T-------------------------CGT------CTTCGCATTCGCACTAGCTGAGC............................................................................................................................................................2715.00500000010301000000
.........................................................................................................................................................................................................................................................................................................................................................................................TCTGATAGCCGGGGA-ACTTGATTATAGCA......................................................................................................................2914.00400000020200000000
.........................................................................................................................................................................................................................................................................................................................................................................................TCTGATAGCCGGGGA-ACTTGATTAT..........................................................................................................................2514.00400000030000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----GCAGAGCTGGTC---GCCAAAGTG---C---GGAA.......................................2714.00400000021001000000
................................................................................................................................................................................................................................................................................................................................................................ATTCGCACTAGCTGAGCAACGG.......................................................................................................................................................2214.00400000002020000000
.................................................................................................................................................................................................................................................................................................................................................................TTCGCACTAGCTGAGCAACGGGT.....................................................................................................................................................2314.00400000002000020000
..................CA-C----CCCACTCT-AACGCC-CACAA-GCCGGC-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2814.00400000010000021000
.................................................................................................................................................................................................................................................................................................................................................................TTCGCACTAGCTGAGCAACGGG......................................................................................................................................................2214.00400000000000040000
............................................................................................................................................................................................................................................................................................................................................................................TGAGCAACGGGTATCTGATAGCC..........................................................................................................................................2314.00400000000000022000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----GCAGAGCTGGTC---GCCAAAGTG---C---GGAAA......................................2814.00400000001101010000
................................................................................................................................................................................................................................................................................................................................................................ATTCGCACTAGCTGAGCAACGGGT.....................................................................................................................................................2414.00400000002110000000
........................................................................................................................................................................................................................................................................................................................................................................TAGCTGAGCAACGGGTATCTGATAGC...........................................................................................................................................2614.00400000000003010000
.................................................................................................................................................................................................................................................................................................TCCCAGAAAAATTATG-AAATTT-------------------------CGT------C..................................................................................................................................................................................2613.00300000020001000000
..............................................................................................................................................................................................................................................................................................................................................................................AGCAACGGGTATCTGATAGCCGGG.......................................................................................................................................2413.00300000030000000000
..................................................................................................................................................................................................................................................................................................CCCAGAAAAATTATG-AAATTT-------------------------CGT------CTT................................................................................................................................................................................2723.00600000031200000000
.......................................................................................................................................................................................................................................................................................................................................................................................TATCTGATAGCCGGGGA-ACTTGAT.............................................................................................................................2413.00300000020100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTC---GCCAAAGTG---C---GGAAAA--GAG-------C........................2513.00300000000003000000
............................................................................................................................................................................................................................................................................................................................................................................TGAGCAACGGGTATCTGATAGC...........................................................................................................................................2213.00300000000001020000
...........................................................................................................................................................................................................................................................................................................................................................TTCGCATTCGCACTAGCTGAGCAACGGG......................................................................................................................................................2813.00300000000110010000
.................................................................................................................................................................................................................................................................................................TCCCAGAAAAATTATG-AAATTT-------------------------CGT------CT.................................................................................................................................................................................2713.00300000002010000000
................................................................................................................................................................................................................................................................................................................................................................ATTCGCACTAGCTGAGCAACGGG......................................................................................................................................................2313.00300000012000000000
.............................................................TGACACG--------------------------------------------------------------------CCCACACTTT------T-----------GCAAAATGT................................................................................................................................................................................................................................................................................................................................................................2712.00200000010010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTTTGTA---------------T---T-----GCAGAGCTGGTC---GCCAA......................................................2912.00200000002000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTA---------------T---T-----GCAGAGCTGGTC---GCCAAAG....................................................2612.00200000010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TGTA---------------T---T-----GCAGAGCTGGTC---GCCAAAGT...................................................2612.00200000000000020000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----GCAGAGCTGGTC---GCCAAAGTG---C---GG.........................................2512.00200000000002000000
............................................................................................................................................................................................................................................................................................................................................................................TGAGCAACGGGTATCTGATAGCCGGGG......................................................................................................................................2712.00200010010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---GCCAAAGTG---C---GGAAAA--GAG-------CCAAAAAT.................2812.00200000000000020000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---GGAAAA--GAG-------CCAAAAATCATC--GACGT......2712.00200000000000020000
...............................................................................................................................................................................................................................................................................................................................................................CATTCGCACTAGCTGAGCAACGGG......................................................................................................................................................2412.00200200000000000000
......................................................................................................................................................................................................................................................................................................................................................................ACTAGCTGAGCAACGGGTATCTGA...............................................................................................................................................2432.00600006000000000000
.TG--------------CCA-C----CCCACTCT-AACGCC-CACAA-GC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000001000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTA---------------T---T-----GCAGAGCTGGTC---GCCAA......................................................2522.00400000010300000000
...........................CCACTCT-AACGCC-CACAA-GCCGGC-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200000020000000000
.................................................................................................................................................................................................................................................................................................................................................CGT------CTTCGCATTCGCACTAGCTGA..............................................................................................................................................................2412.00200000010001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTC---GCCAAAGTG---C---GGAAAA--GA.................................2312.00200000000011000000
.........................................................................................................................................................................................................................................................................................................................................................................................TCTGATAGCCGGGGA-ACTTGATTATA.........................................................................................................................2612.00200000000110000000
.......................................................................................................................................................................................................................................................................................................................................................................................TATCTGATAGCCGGGGA-ACTTGATTAT..........................................................................................................................2712.00200000002000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TCTGATAGCCGGGGA-ACTTGATTAA..........................................................................................................................2512.00200000000000020000
..................CA-C----CCCACTCT-AACGCC-CACAA-GCCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000000000020000
..........................................................................................................................................................................TGTTTTG---------------------------------------A-------------TT-------ATTTT-----------------ATTATCT--------------ATCGA..............................................................................................................................................................................................................................................2712.00200000000020000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTC---GCCAAAGTG---C---GGAAAA--GAG-------.........................2412.00200000000002000000
...................................................................................................................................................................................................................................................T-----------------ATTATCT--------------ATCGATATCCCAGAAA...................................................................................................................................................................................................................................2412.00200000002000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TGATAGCCGGGGA-ACTTGATTATAGC.......................................................................................................................2612.00200000002000000000
......................................................................................................................................................................................................................................................................................................GAAAAATTATG-AAATTT-------------------------CGT------CTTCGCA............................................................................................................................................................................2712.00200000000200000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTA---------------T---T-----GCAGAGCTGGTC---GCCAAA.....................................................2721.50300000000200010000
.......................................................................................................................................................................................................................................................................................................................................................................................TATCTGATAGCCGGGGA-ACTTGA..............................................................................................................................2321.50300000020010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TA---------------T---T-----GCAGAGCTGGTC---GCCAAAGTG---...............................................2511.00100000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GATTATAGCAT-TCTCCCTTGCTTTTG.....................................................................................................2611.00100000000000010000
..................................................................................................................................................................................................................................................................................................CCCAGAAAAATTATG-AAATTT-------------------------CGT------C..................................................................................................................................................................................2521.00200000000011000000
.............................................................TGACACG--------------------------------------------------------------------CCCACACTTT------T-----------GCAAAA...................................................................................................................................................................................................................................................................................................................................................................2411.00100000000010000000
...........................CCACTCT-AACGCC-CACAA-GCCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTC---GCCAAAGTG---C---GGAAAA--GAG-------.........................2311.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TA---------------T---T-----GCAGAGCTGGTC---GCCAAAGTG---C---...........................................2611.00100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................TGAGCAACGGGTATCTGATAGCCGGT.......................................................................................................................................2621.00200000010100000000
.................................................................................................................................................T------T-----------GCAAAATGTTTTG---------------------------------------A-------------TT-------ATTTT-----------------A.......................................................................................................................................................................................................................................................................2411.00100000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTA---------------T---T-----GCAGAGCTGGTC---GCCA.......................................................2521.00200000010000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TA---------------T---T-----GCAGAGCTGGTC---GCCAAAGTG---C---GGA........................................2911.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................T---T-----GCAGAGCTGGTC---GCCAAAGTG---C---GG.........................................2611.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................AGCCGGGGA-ACTTGATTATAGCAT-T...................................................................................................................2511.00100000001000000000
................................................................................................................................................................................................................................................................................................ATCCCAGAAAAATTATG-AAATTT-------------------------CGT------C..................................................................................................................................................................................2711.00100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................TGAGCAACGGGTATCTGATAGCCT.........................................................................................................................................2411.00100000000000001000
.................................................................................................................................................................................................................................................................................................................................................................TTCGCACTAGCTGAGCAACGGGTAAT..................................................................................................................................................2611.00100000000000010000
............................................................................................................................................................................................................................................................................................................................................................................TGAGCAACGGGTATCTGATAGCCGGGGA-ACT.................................................................................................................................3111.00100000010000000000
................................................................................................................................................TT------T-----------GCAAAATGTTTTG---------------------------------------A-------------TT-------ATTTT-----------------A.......................................................................................................................................................................................................................................................................2511.00100000000100000000
.........................................................................................................................................................................................................................................................................................................................................................................................TCTGATAGCCGGGGA-ACTTGATTATAGC.......................................................................................................................2811.00100000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................................TAGCCGGGGA-ACTTGATTATAGCAT-....................................................................................................................2511.00100000000000010000
............................................................................................................................................................................................................................................................................................................................................................................................GATAGCCGGGGA-ACTTGATTATAGC.......................................................................................................................2511.00100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTA---------------T---T-----GCAGAGCTGGTC---GCCAA......................................................2421.00200000001100000000
..............................................................................................................................................................................................................................................................................................................................................................................................TAGCCGGGGA-ACTTGATTATAGCAT-TC..................................................................................................................2711.00100100000000000000
..........................CCCACTCT-AACGCC-CACAA-GCCGGC-GAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000000001000000
...............................................................................................................................................................................................................................................................................................................TG-AAATTT-------------------------CGT------CTTCGCATTCGCACTAGC.................................................................................................................................................................2911.00100000010000000000
...................................................................................................................................................................................................................................................................................................CCAGAAAAATTATG-AAATTT-------------------------CGT------CTT................................................................................................................................................................................2621.00200000010001000000
...............................................................................................................................................................................................................................................................................................TATCCCAGAAAAATTATG-AAATTT-------------------------CGT------CT.................................................................................................................................................................................2911.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................CGGGGA-ACTTGATTATAGCAT-T...................................................................................................................2211.00100000000000010000
...............................TCT-AACGCC-CACAA-GCCGGC-GAACAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
...........................................................................................................................................................................................................................................................................................................ATTATG-AAATTT-------------------------CGT------CTTCGCATT..........................................................................................................................................................................2411.00100000010000000000
...............................TCT-AACGCC-CACAA-GCCGGC-GAACACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................TAGCCGGGGA-ACTTGATTATAGCA......................................................................................................................2411.00100000010000000000
...............................................................................................................................................................................................................................................................................................TATCCCAGAAAAATTATG-AAATTT-------------------------CGT------C..................................................................................................................................................................................2811.00100000000010000000
..................................................................................................................................................................................................................................................................................................CCCAGAAAAATTATG-AAATTT-------------------------CGT------CT.................................................................................................................................................................................2621.00200000010010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGGTC---GCCAAAGTG---C---GGAAAA--...................................2511.00100000010000000000
........................................C-CACAA-GCCGGC-GAACACTGACAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----GCAGAGCTGGTC---GCCAAAGTG---C---...........................................2311.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTA---------------T---T-----GCAGAGCTGGTC---GCCAAAG....................................................2811.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................T---T-----GCAGAGCTGGTC---GCCAAAGTG---C---GGAA.......................................2811.00100000010000000000
........................................................AACACTGACACG--------------------------------------------------------------------CCCACACTTT------T-----------GCAAAA...................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
...............................................................................................................................................................................................................................................................................................TATCCCAGAAAAATTATG-AAATTT-------------------------CGT------CTT................................................................................................................................................................................3011.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................ACTTGATTATAGCAT-TCTCCCTTGC..........................................................................................................2511.00100000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTA---------------T---T-----GCAGAGCTGGTC---GCCAAA.....................................................2621.00200000010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---GCCAAAGTG---C---GGAA.......................................1611.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................AGCTGAGCAACGGGTATCTGATAGCCGGG.......................................................................................................................................2911.00100000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---C---GGAAAA--GAG-------CCAAAAATCATC--G..........2511.00100000000100000000
..........................................CACAA-GCCGGC-GAACACTGACACG--------------------------------------------------------------------C....................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---GCCAAAGTG---C---GGAAAA--GAG-------.........................2111.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................TGATAGCCGGGGA-ACTTGATTATAGCAT-....................................................................................................................2811.00100000000000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---GCCAAAGTG---C---GGAAAA--GAG-------CCAAAA...................2711.00100000000100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTC---GCCAAAGTG---C---GG.........................................1911.00100000000001000000
.......................................................................................................................................................................................................................................................................................................................T-------------------------CGT------CTTCGCATTCGCACTAGC.................................................................................................................................................................2211.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................GCATTCGCACTAGCTGAGCAACGGG......................................................................................................................................................2511.00100000000100000000
......................................................................................................................................................................................................................................................................................................................................................................................GTATCTGATAGCCGGGGA-ACTTGATTA...........................................................................................................................2711.00100000010000000000
.....................C----CCCACTCT-AACGCC-CACAA-GCCGGC-GA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
............................................................................................................................................................................................................................................................................................................................................................................TGAGCAACGGGTATCTGATAGCCG.........................................................................................................................................2411.00100000000001000000
..............................................................................................................................................................................................................................................................................................ATATCCCAGAAAAATTATG-AAATTT-------------------------CGT------CTT................................................................................................................................................................................3111.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................TAGCTGAGCAACGGGTATCTGAT..............................................................................................................................................2340.75300000000011010000
............................................................................................................................................................................................................................................................................................CGATATCCCAGAAAAAT................................................................................................................................................................................................................................17200.7014000000000014000000
.....................................................................................................................................................................................................................................................................................................................................................................CACTAGCTGAGCAACGGGTATCTGA...............................................................................................................................................2530.67200000000002000000
.....................................................................................................................................................................................................................................................................................................................................................................CACTAGCTGAGCAACGGGTATCTG................................................................................................................................................2430.67200000000101000000
............................................................................................................................................................................................................................................................................................CGATATCCCAGAAAAATTATG-AAAT.......................................................................................................................................................................................................................25200.601200010001505000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TGTA---------------T---T-----GCAGAGCTGGTC---GCCAAA.....................................................2420.50100000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TGTA---------------T---T-----GCAGAGCTGGTC---GCC........................................................2120.50100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TGTA---------------T---T-----GCAGAGCTGGTC---...........................................................1820.50100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTA---------------T---T-----GCAGAGCTGGTA---...........................................................1920.50100000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTA---------------T---T-----GCAGAGCTGGTC---GCCAAA.....................................................2520.50100000000000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTA---------------T---T-----GCAGAGCTGGTC---GCC........................................................2420.50100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TATCTGATAGCCGGGGA-AC..................................................................................................................................1970.43300000021000000000
.................................................................................................................................................................................................................................................................................................................................................................................AACGGGTATCTGATAGCCGG........................................................................................................................................2050.40200000000002000000
....................................................................................................................................................................................................................................................................................................................................................................................GGGTATCTGATAGCCGGGGA-AC..................................................................................................................................2250.40200000011000000000
............................................................................................................................................................................................................................................................................................CGATATCCCAGAAAAATTATG-AA.........................................................................................................................................................................................................................23200.35700000000700000000
.....................................................................................................................................................................................................................................................................................................................................................................CACTAGCTGAGCAACGGGTA....................................................................................................................................................2030.33100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................CACTAGCTGAGCAACGGGTAT...................................................................................................................................................2130.33100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................AACGGGTATCTGATAGCCGGGGA-AC..................................................................................................................................2530.33100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................CACTAGCTGAGCAACGGGTATCTGAT..............................................................................................................................................2630.33100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................TAGCTGAGCAACGGGTATCTGATAG............................................................................................................................................2530.33100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................TGAGCAACGGGTATCTGATA.............................................................................................................................................2060.33200000000000011000
......................................................................................................................................................................................................................................................................................................................................................................ACTAGCTGAGCAACGGGTA....................................................................................................................................................1930.33100000000001000000
............................................................................................................................................................................................................................................................................................CGATATCCCAGAAAAATTATG-AAATT......................................................................................................................................................................................................................26200.25500000030000020000
........................................................................................................................................................................................................................................................................................................................................................................TAGCTGAGCAACGGGTATCTGATA.............................................................................................................................................2440.25100000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................CTGAGCAACGGGTATCTGATA.............................................................................................................................................2140.25100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................GCTGAGCAACGGGTATCTG................................................................................................................................................1940.25100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................CACTAGCTGAGCAACGG.......................................................................................................................................................1740.25100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................AGCTGAGCAACGGGTATCTGATA.............................................................................................................................................2340.25100000000000001000
..................................................................CG--------------------------------------------------------------------CCCACACTTT------T-----------GCAAAATGTTTTG---------------------------------------A-------------.......................................................................................................................................................................................................................................................................................................2740.25100000000100000000
............................................................................................................................................................................................................................................................................................................................................................................TGAGCAACGGGTATCTGATAG............................................................................................................................................2150.20100000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................GGGTATCTGATAGCCGGGGA-ACT.................................................................................................................................2350.20100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TATCTGATAGCCGGGGA-ACT.................................................................................................................................2060.17100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................TGATAGCCGGGGA-ACT.................................................................................................................................1660.17100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................GTATCTGATAGCCGGGGA-AC..................................................................................................................................2060.17100000000001000000
............................................................................................................................................................................................................................................................................................CGATATCCCAGAAAAATTATG-AAA........................................................................................................................................................................................................................24200.15300000030000000000
...........................................................................................................................................................................................................................................................................T--------------ATCGATATCCCAGAAAAATTATG-A..........................................................................................................................................................................................................................25200.15300000002001000000
....................................................................................................................................................................................................................................................................................................................................................................................GGGTATCTGATAGCCGGGGA-....................................................................................................................................2080.13100000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................CACTAGCTGAGCAACGGGTATCTT................................................................................................................................................2490.11100000000000010000
.......................................................................................................................................................................................................................................................................TATCT--------------ATCGATATCCCAGAAAAATT...............................................................................................................................................................................................................................25200.10200000001010000000
..........................................................................................................................................................................................................................................................................................ATCGATATCCCAGAAAAATTATG-AA.........................................................................................................................................................................................................................25200.10200000010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................TATCTGATAGCCGGGGA-A...................................................................................................................................18100.10100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................TATCTGATAGCCGGG.......................................................................................................................................15100.10100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TCTGATAGCCGGGGA-....................................................................................................................................15100.10100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TATAGCAT-TCTCCCTT............................................................................................................16150.07100000000001000000
.........................................................................................................................................................................................................................................................................TCT--------------ATCGATATCCCAGAAAAATTATG-AAA........................................................................................................................................................................................................................29200.05100000001000000000
.......................................................................................................................................................................................................................................................................TATCT--------------ATCGATATCCCAGAAAAATTA..............................................................................................................................................................................................................................26200.05100000010000000000
...........................................................................................................................................................................................................................................................................................TCGATATCCCAGAAAAATTATG-AAA........................................................................................................................................................................................................................25200.05100000000100000000
.........................................................................................................................................................................................................................................................................TCT--------------ATCGATATCCCAGAAAAATTATG-AA.........................................................................................................................................................................................................................28200.05100000000010000000
...........................CCACTCT-AACGCC-CACAA-GCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100000010000000000
............................................................................................................................................................................................................................................................................................CGATATCCCAGAAAAATTATG-AAATTG-------------------------............................................................................................................................................................................................27200.05100000000000010000
..........................................................................................................................................................................................................................................................................................ATCGATATCCCAGAAAAATTATG-AAA........................................................................................................................................................................................................................26200.05100000000100000000
droSec2
TTG--------------CCA-C----CCCACTCT-AACGCC-CACAA-GCCGGC-GAACACTGACACG--------------------------------------------------------------------CCCACACTTT------T-----------GCAAAATGTTTTG---------------------------------------A-------------TT-------ATTTT-----------------ATTATCT--------------ATCGATATCCCAGAAAAATTATG-AAATTT-------------------------CGT------CTTCGCATTCGCACTTGCTGAGCAACGGGTATCTGATAGCCGGGGA-ACTTGATTATAGCAT-TCTCCCTTGCTTTTGTA---------------T---T-----GCAGAGCTGGTC---GCCAAAGTG---C---GGAAAA--GAG-------CCAAAAATCATC--GACGTACCCAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
TCG--------------ACCAGG---CCCCTCCC-TACACC-TACAA-AACGAC-CAAAAC------GTTCACTTTTAAACAATTTTTAAGTT--TTTCC---------------------------------------------------------------------------------------------------------TCATTTTGTTCTCCAATA--------------------------------------------------------TCTATCGATATCCCAGAAAAATTATG-AATTTT-------------------------CGC------CTTCGCATTCACACTAGCTGAGTAAAGGATATTTGATAGTCGGGGA-ATTCGGCTATAGTAT-TCTCTCTTGTTTTTGTA---------------T---T-----GCAGAGCTGGTC---ACCAAAGTG---C---GGAAAA--GAT-------CCAAAAATCATT--GACGTACCCAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................TATTTGATAGTCGGGGA-ATTCGGC.............................................................................................................................24316.33490000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000100000300000010000000000000000000000000000000000000000000000000000110100010005000200440407520000000000000000000000000000000000000000000000000000000000000000000020000000040000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................TGAGTAAAGGATATTTGATAGTCGGG.......................................................................................................................................26315.67470000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000002020000000000000000000000000000000000000100100100000000000000000000530402490000000000000000000000000000000000000000000000000000000000000000000000050000110000000000001000121000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----GCAGAGCTGGTC---ACCAAAGTG---C---GGA........................................26212.50250000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000001000000000000000400004000000200000310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113200000
..........................................................................................................................................................................................................................................................................................................................................................................................................TTCGGCTATAGTAT-TCTCTCTTGTT.........................................................................................................25312.333700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000051021700000000000000000511320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................TGAGTAAAGGATATTTGATAGTCGG........................................................................................................................................25311.33340000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000001000000000000000000000000000100100000210000000000000000000000001000000000000000000000000000001000000000100110103160000000000000000001000000000000000000000000000000000000000000000000001010000101000000000000000100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TTCGGCTATAGTAT-TCTCTCTTGTTT........................................................................................................26211.00220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001720200000000000000000203230000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TA---------------T---T-----GCAGAGCTGGTC---ACCAAAGTG---C---...........................................2627.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000200100200000000000000000000000000000000000000000000000000000000000000000000000040000001000000000000000001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................TTCGGCTATAGTAT-TCTCTCTTGTTTT.......................................................................................................2725.50110000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000010001340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----GCAGAGCTGGTC---ACCAAAGTG---C---GG.........................................2525.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---C---GGAAAA--GAT-------CCAAAAATCATT--GACG.......2825.00100000000000000000000000000000000000000010000000000000000000000000000000000000001110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000100001110000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................TTCACACTAGCTGAGTAAAGGA......................................................................................................................................................2225.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTA---------------T---T-----GCAGAGCTGGTC---ACCAAAG....................................................2724.5090000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000001000000000000000000000000000000000000000000000000130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................TTCGGCTATAGTAT-TCTCTCTTGT..........................................................................................................2434.33130000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002230300000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAAAGTG---C---GGAAAA--GAT-------CCAAAAAT.................2724.0080000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000200000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TA---------------T---T-----GCAGAGCTGGTC---ACCAAAGT...................................................2424.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000100000000000000000000000000000000000000000000000000000000000000000000000021000001000000000000000010000000
........................................................................................................................................................................................................................................................................................................................................................................TAGCTGAGTAAAGGATATTTGATAG............................................................................................................................................2533.67110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000000000000000000100000000050000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................T---T-----GCAGAGCTGGTC---ACCAAAGTG---C---GG.........................................2623.5070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000010000010000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000100100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTG---C---GGAAAA--GAT-------CCAAAAAT.................2423.5070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000001000000000100100100000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TCGGCTATAGTAT-TCTCTCTTGTTT........................................................................................................2523.5070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000300000000000000010100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TTTGATAGTCGGGGA-ATTCGGCTA...........................................................................................................................2433.33100000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001500300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TAGTCGGGGA-ATTCGGCTATA.........................................................................................................................2143.251300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTA---------------T---T-----GCAGAGCTGGTC---ACCAAAG....................................................2623.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000002000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TGTA---------------T---T-----GCAGAGCTGGTC---ACCAAAG....................................................2523.0060000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---ACCAAAGTG---C---GGAAAA--GAT-------CCAAAAAT.................2923.0060000000000000000000000000000000000000000000000000000000000000000000000000000012010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................ATCCCAGAAAAATTATG-AATTTT-------------------------CGC------C..................................................................................................................................................................................2733.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000303120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TATTTGATAGTCGGGGA-ATTCGG..............................................................................................................................2333.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000001000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000100000000011000000000000010010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TA---------------T---T-----GCAGAGCTGGTC---ACCAAAGTG---C---G..........................................2723.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000200000000100000000000000000000000000000000000000000000000000000000000000000000000001000000000001000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................A-ATTCGGCTATAGTAT-TCTCTCTTGTT.........................................................................................................2732.6780000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGTTTTTGTA---------------T---T-----GCAGAGCTGG................................................................2522.5050000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---ACCAAAGTG---C---GGAAAA--GAT-------CCAAAAAT.................2822.5050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGTTTTTGTA---------------T---T-----GCAGAGCTGGTC---...........................................................2722.5050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTA---------------T---T-----GCAGAGCTGGTC---ACC........................................................2422.5050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200000
.......................................................................................................................................................................................................................................................................................................................................................................................TATTTGATAGTCGGGGA-ATTCGGCTA...........................................................................................................................2632.3370000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000202200000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................T---T-----GCAGAGCTGGTC---ACCAAAGTG---C---...........................................2422.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TA---------------T---T-----GCAGAGCTGGTC---ACCAAAG....................................................2322.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................TTCACACTAGCTGAGTAAAGGATATT..................................................................................................................................................2622.0040000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
............................................................................................T--TTTCC---------------------------------------------------------------------------------------------------------TCATTTTGTTCTCCAATA--------------------------------------------------------TC....................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................GA-ATTCGGCTATAGTAT-TCTCTCT.............................................................................................................2432.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................GATATTTGATAGTCGGGGA-ATTCGGC.............................................................................................................................2632.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100300000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................TAAAGGATATTTGATAGTCGGGGA-A...................................................................................................................................2532.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TA---------------T---T-----GCAGAGCTGGTC---ACCAAAGTG---C---GG.........................................2822.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA--GAT-------CCAAAAATCATT--GACGTACC...2622.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100020000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TTTGATAGTCGGGGA-ATTCGGC.............................................................................................................................2232.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000101000000100000000000000000000000000
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..................................................................................................................................................................................................................................................................................................................................................................................................................TAGTAT-TCTCTCTTGTTTTTGTA---------------T---................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCTGGTC---ACCAAAGTG---C---G..........................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATTCGGCTATAGTAT-TCTCTCTTGTAC........................................................................................................2730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................CCCAGAAAAATTATG-AATTTT-------------------------CGC------CTTC...............................................................................................................................................................................2830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................TAAAGGATATTTGATAGTCGGGGA-TGG.................................................................................................................................2730.3310000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................GCTGAGTAAAGGATATTTGATAGTCG.........................................................................................................................................2630.3310000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................A-ATTCGGCTATAGTAT-TCTCTC..............................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTA---------------T---T-----GCAGAGCTGGT...............................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................GTAAAGGATATTTGATAGTCGGGGA-....................................................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................AAAGGATATTTGATAGTCGGG.......................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................ATATTTGATAGTCGGGGA-ATTCGG..............................................................................................................................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................TAGCTGAGTAAAGGATATTTGATAGTC..........................................................................................................................................2730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................TCACACTAGCTGAGTAAAGGA......................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................GCTATAGTAT-TCTCTCTTGTT.........................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................AATTATG-AATTTT-------------------------CGC------CTTCGCATT..........................................................................................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TTCGGCTATAGTAT-TCTC................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TTTTGTTCTCCAATA--------------------------------------------------------TCTATCGATA............................................................................................................................................................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TCGGGGA-ATTCGGCTATAGT.......................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TTTGATAGTCGGGGA-ATTCGGCTATA.........................................................................................................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTG--------------CCA-CG---CCCTTTCT-AACGCA-CACAA-ACCCTCGCAAAACTGTCACG--------------------------------------------------------------------CTCACACTT-------------------C-AAGTTTTTTTA---------------------------------------A-----------------------TTTT-----------------AATTTTTTTCCCCCAATTTCTACTGATATC-CAGATAA-TGTTG-AAATTT-------------------------CTC------GTTCGCACTTCCACTAGGTGAGTAACGGGTATCTGAT--TCGGGGA-ACTCGTCTATAGCAT-TCTCATGAAT-TATGTA---------------T---TTACGGGCAAAGC-GGAA---GCCACAGCAAAAC----GAAAATAGCT-------TCAATAAACCTA--ACTGAACTAGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................TT-----------------AATTTTTTTCCCCCAATTTCTACTG...............................................................................................................................................................................................................................................2711.0011000000
droYak3
TTG--------------ACA-CG---TCCACTCC-AACTCC-CACAA-ACAGTC-CAAAACTAACACG--------------------------------------------------------------------TACAAATTT-------------------GTATTATTTTTTG------------------------------------------------------T-------ATTTT-----------------AATATCTATTCCCCAATTTCTACCGATATTGCAGAAAA-TGTTA-CAATTT-------------------------CTT------ATTTGTAATTTTACTACCTGAGTAACGGGTATCTGATAGTCGGGGA-ACTCGACTATAAAAT-TCTCTTTTGTTTTTTTA---------------A---T-----GAAGTT-TTGTG---GCCATTTTG---G---CGACAG--GTG-------CCAAAAG----T--GCCGTACC---SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
CTG--------------CCA-CG---CCCACTCT-AACGCC-CACAA-ACCGCG-GAAAAC---CACG--------------------------------------------------------------------TTTGACCTTG------T-----------ATAACACATTTTG---------------------------------------ATCAATATCTATGGGAATTTCCA-----CTAGCAAAATGTATATTTTTAAGT----------------------------------------------------------------------------------------TGTGTAAAAAAGTAACGGGTATCTTATGATCGCAGC-ACTCGATTATAGCGT-TTCCGCTTGTTTGTATT--------------GTGATT-GTTGGCA--GCATGTCTCTGCCAAAAAG---CAGCTGAAAA--GAG-------ACCAAA---------------CCCASizeHit CountTotal NormTotal
No Reads
droBia1
TTG--------------CCA-CG---CTCATATT-AACGCC-TACAA-ATGGCC-AAACGTTTAAAT------------C---------------TTTCT--------------------------------GCCGCCCACATTA-------------------C-C-----------ATATTTT--------AAAATAGTGGATAGGTGGCGC---------------------------------------------------------------------------------------TATA-CAATATCGCTTTGCTGCTTATATATCTCCACTT--------------CTCTTTAAAGCTGAGTAACGGGTATCTGATAGTCGAGGC-ACTCGACTATAGCGT-TCTTTCTTGTTTTAATA--------------ATAA-----------TCATAGTC---GTGGATGAA---C---ATAAAA--AAA-------ACAAGA------------------ASizeHit CountTotal NormTotal
No Reads
droTak1
TTTGTTTCAAAAGGGTGCCA-CG---CCCCCTCG-AACGCT-CACAA-TCG---------------------CTTATATACGATTTTAAAAA-TT--------------------------------------------------------------------------------TCAATATTTCGGAAAAGTAAAAATGCAGTTTTGTGGTGTTTATCAATA--------------------------------------------------------CCTATCGAAATT-----------------------------------TTTTTTTCCATCTC------CTTCGCACTCCCTTTAGCTGAGTAACGGGTATCTGATAGCCAGGGC-ACCCGACTATAGCGT-TCTCTCTTGTTTAGG-A---------------A---T-----GCAGAGATGAA------TTGAGAG---T---AAAGTA--GAGTAGAGAGTA---AATTATTAAGATAAGTCAAASizeHit CountTotal NormTotal
No Reads
droEle1
CTA--------------ACA-AATCACTAAAATCTGC-CGCGT---A------------ACTCTGA--------------CACTTATTGAACC--TTTGTCAATGCCGTTCTTTAATTAACGCCAACTAAGC----CCC-------------------------------------G---------------------------------------A-------------TT-------GTTTTCTGGAATAATATATATTTTTAAAT----------------------------------------------------------------------------------------TTGTTAGCCAAATAACGGGTGTCGAATAGTCGGGGA-ATGCGATTGTAGCGT-TCTCTCTTGTTTTTTTA--------------AT---T-----GCA-----------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TCA------AAAAGGTGCCA-CG---CCCCCTTT-AACGCC-CACAA-TCG---------------------CTTATATACGATTTTAAAAA-TT--------------------------------------------------------------------------------TAAATATTTCGGA-AAGTAAAAATGCAGTTTTATTGTGTTTATCAATA--------------------------------------------------------CCTATCGAA---------------TATCAAT---------------ATCCATCTCCATCTC------CCTCGCACTCCCTTTACCTGAGTAACGGGTATCTGATAGTCGGGGC-ACCCGACTATAACGT-TCTCTCTTGTTATACCCTTGCAGAGGGTATTATAA-----------TTTTGGTC---A--AAAGTG---T---GCAACG--CAG-------TGAAGGA-------GACATCTCCGASizeHit CountTotal NormTotal
No Reads
droFic1
GTG--------------CCA-CG---CCCACTCT-TATACC-CGAAA-ACCAAA-CATTTCTGCGGCG--------------------------------------------------------------------CTCACTTGTT------T-----------C-AAAA------------------------------------------------------------------------------TTTCGTTTACATTTTTGGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGATT---ACAAAAACG---C---AAAAAA------------------------------------ASizeHit CountTotal NormTotal
No Reads
droKik1
TCC--------------ACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTTTTTGCA---------------T---T-----TCAAAGCTGGTA---ACTCAAGGG---T---TAAATA--GGG-------TAAATAAGTATG----------AAASizeHit CountTotal NormTotal
No Reads
droAna3
ACG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATGAGTACCGGGTATCATATAGTCGCGGA-ACTCCCCTATAACGC-T-------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TTG--------------TTT-CG---TGAATTTCTGA-AGCGC---AAATACTG-GAAG--------G-------------------------------------------------------------------------TTTTC------TGAAAAAC----------TTTTTTG---------------------------------------A-------------AA-------ACTTG-----------------GTTTTTT-------AATGTTT---------------AAACTTTAAAGGTTA-------------------------GTT------AAATGTAGGTGGAAGAGATGAGAACCGGGTATAATATAGTCGGAAA-ACTCGACTATAGCCGTCCTTTCTTGTTCCTCCA---------------T---T-----GTA-----------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
TCG--------------CCT-CG---CCCACTTCCGC-CCC---CCA-AAGGAC-GAAAAGGAGAATA--------------------------------------------------------------------ACCATATCTTCTAGACT-----------GCAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CTGAATTTGATCGTATT--------------ATTAT--------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................TAGACT-----------GCAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CTGAATTTGA..........................................................................................................2322.0040000000400
........................................................................................................................................................T-----------GCAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CTGAATT.............................................................................................................15201.853700000000370
...................................................................................................................................................TAGACT-----------GCAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CTGAATTTGATCG.......................................................................................................2620.5010000000010
....................................................................................................................................................AGACT-----------GCAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CTGAATT.............................................................................................................19200.2550000000230
..................................................................................................................................................CTAGACT-----------GCAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CTGAATT.............................................................................................................21110.0910100000000
................................................................................................................................................TTCTAGACT-----------GCAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CTGAA...............................................................................................................21180.0610000000010
....................................................................................................................................................AGACT-----------GCAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CTGAA...............................................................................................................17200.0510000000100
............................................................................................................................................TATCTTCTAGACT-----------GCAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CTGA................................................................................................................24200.0510000000010
..............................................................................................................................................TCTTCTAGACT-----------GCAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CTG.................................................................................................................21200.0510100000000
............................................................................................................................................TATCTTCTAGACT-----------GCAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......................................................................................................................19200.0510100000000
droPer2
TCG--------------CCT-CG---CCCACTTCCGC-CCC---CCA-AAAGAC-GAAAAGGAGAATA--------------------------------------------------------------------ACCATATCTTCTAGACT-----------GCAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CTGAATTTGATCGTATT--------------ATTAT--------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TAG--------------CTC-------CCATACA-AAC--C--GCAA-AGTCAC-GAACAGTGAC----------------------------------------------------------------------------TTTTC------TCAATAAC--------------TTC---------------------------------------A-------------TT-------ATTTT-----------------CTGAGCT--------------ATTGTTGT--CAAAATATTTATG-AATTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................ATACA-AAC--C--GCAA-AGTCAC-GA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10200101
..................................................TCAC-GAACAGTGAC----------------------------------------------------------------------------TTTTC------TCAAT................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
..................................................TCAC-GAACAGTGAC----------------------------------------------------------------------------TTTTC------TCAATAAC--------------T..............................................................................................................................................................................................................................................................................................................................................................28200.05100010
.........................................................................................................................................................CAATAAC--------------TTC---------------------------------------A-------------TT-------ATTTT-----------------CTGAGCT--------------...................................................................................................................................................................................................................................................25200.05110000
droVir3
ACG--------------TTT-TT---------------------------------------------------------------------------------------------------------------------------------------------ATAAGGTTGTTAC---------------------------------------C-------------TT-------CTATT-----------------ATTATTT--------------CTCTAT------------TGATG-CAATAT-------------------------TGTCTCAAAAGTGTTTTGGGTAGGTTCCAAGTAATGAGCATTTTAGGCTAGATGT-AATTGATTTCAACAT-TTTTTCTTGTTTTTGTA---------------T---A-----ACA-----------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................TATTT--------------CTCTAT------------TGATG-CAATAT-------------------------TGTC........................................................................................................................................................................................2612.002000000000000000000000000010100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TTAGGCTAGATGT-AATTGATTTCAACAT-....................................................................................................................2811.001000000000100000000000000000000000000000000000000000000000000000
droMoj3
ATA--------------TTA-TT---CGA-------------------------------------------------------------------------------------------------------------------------------TAACTTATTCGATATTTTTTT---------------------------------------ATCGAAGATAATCGATAAATTGA-----TTAGCAGAACGTGTGTTTTTGTAT----------GTGG-------------GTAC-AA-TAGAAGTG----------------------CAAAATG------ATTAGCATATCAGCTGGCAGAGTGCAGGGTATCTCCTAGTCGAGCAGTCGCGACTAAAACAC-TCTTCTTTGTTTT-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGAGTTTAGGGTACATTGTAGTCGAGCTCACTTGACTATGGCAT-TCTTACTTGTTTTTTTT--------------TTTTTTTGCTTGTAAAACTGGTT---GACA-------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:04 PM