dsi_4370

five_prime_UTR [2r_20304050_20304546_+]; exon [2r_20304050_20304546_+]; intron [2r_20304547_20305592_+]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TTGGATCGGATCGGATCGTCGGTGAAGGCGAGTTCCAGGCGCTTGCCCAAGTAAATCGAATCGAGTGAATCCGCTGTCCCCCAAAAGCATTCCCGCACGAGTGTCCGGGTGTCCAGTGGCTGGCCTGGGCGGGCACATCCTCGGGTTAGATAACACCGTCCAGTCCATCCTGCTCCACCACGACCACCACCACCACCTCTGCGTATGTATGTACATGCGTGCGTATGTGCGTGTTTGGATGTACGTATCT ************************************************..........(((.(((.....(((..........))).....))).)))(((..((((((...(((((.(((.((((((((....(((.........)))....)))))))).))).)).))).)))).))..))).............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	M025 embryo	GSM343915 embryo	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M024 male body	M023 head	SRR553486 Makindu_3 day-old ovaries
................CGTCGGTGAAGGCGAGTTCCAGGC..................................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0
........GATCGGATCGTCGGTGAAGGC.............................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0
.................GTCGGTGAAGGCGAGTTCCAGGCGCTT..............................................................................................................................................................................................................	27	0	1	1.00	1	0	0	1	0	0	0	0	0
....ATCGGATCGGATCGTCGGTGAAGGCGAG..........................................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0	0
........GATCGGATCGTCGGTGAAGA..............................................................................................................................................................................................................................	20	1	1	1.00	1	0	1	0	0	0	0	0	0
................CGTCGGTGAAGGCGAGTTCCAGG...................................................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0
............................................................................................................GTGTCCAGTTGCTGG...............................................................................................................................	15	1	20	0.10	2	0	0	0	0	2	0	0	0
...............................................................................................................................................................................................................................TATGTGCGTTTTTGG............	15	1	20	0.10	2	0	0	0	2	0	0	0	0
.............................................................................................................................................................GTCCAGTCCATGCTG..............................................................................	15	1	10	0.10	1	0	0	0	1	0	0	0	0
...............................................................................................................TCCCGTGGCTCGCCGGGGC........................................................................................................................	19	3	12	0.08	1	0	0	0	0	0	1	0	0
..................................................GTAAATCGAATCGAGC........................................................................................................................................................................................	16	1	13	0.08	1	0	0	0	1	0	0	0	0
.................................................................................................................................................................ATTCCGTCCGGCTCCACCA......................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................CGTATGTGCGTGGTAG.............	16	2	20	0.05	1	0	0	0	0	0	0	0	1
.................................................................................................................................................................ACTCCGTCTTGCTCCACCA......................................................................	19	3	20	0.05	1	0	0	0	0	1	0	0	0
............................................................................................................GTGTCCAGTCGCTGG...............................................................................................................................	15	1	20	0.05	1	0	0	0	0	1	0	0	0

AACCTAGCCTAGCCTAGCAGCCACTTCCGCTCAAGGTCCGCGAACGGGTTCATTTAGCTTAGCTCACTTAGGCGACAGGGGGTTTTCGTAAGGGCGTGCTCACAGGCCCACAGGTCACCGACCGGACCCGCCCGTGTAGGAGCCCAATCTATTGTGGCAGGTCAGGTAGGACGAGGTGGTGCTGGTGGTGGTGGTGGAGACGCATACATACATGTACGCACGCATACACGCACAAACCTACATGCATAGA ************************************************..........(((.(((.....(((..........))).....))).)))(((..((((((...(((((.(((.((((((((....(((.........)))....)))))))).))).)).))).)))).))..))).............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries	M024 male body	SRR553488 RT_0-2 hours eggs
.................CAGCCACTTCCGCTCAAGG......................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0
.....GCCCTAGCCTAGCAGCCA...................................................................................................................................................................................................................................	18	2	4	0.25	1	0	1	0	0	0
.............................................................................................................................................................................AGGTGGTGCTGGTGGT.............................................................	16	0	5	0.20	1	0	0	1	0	0
................................................................................................................................................CAATTTATTGTAGCAGGC........................................................................................	18	3	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................GGAGTCGCATTCATAC.......................................	16	2	20	0.05	1	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2r:20304497-20304746 +	dsi_4370	TT-----GGATCGG-----A----------------------------TCGGATCGTCGGTGAA--GGCGAG---TTCC--AGGCGCTTGCCCAAGTAAATCGAATCGAGTGAATCC--------------GCTG-----------------------TC-CC-----------CCAAAAGCATTCCC-G----------------------------------------------------CACGAGTGTCCGGGTGTCCAGT--------------------------GGC-TGGCCTGG--------------------------------------------GCGGGCACATCCTCGG--------------------------------------GTTAGATAACAC---------CGT-CCAGTCCATCCTGCTCC-------ACC------------ACGACCACCACCACCACCTCTGCG----TAT------------------------GTATGTACATGCGTGCGTATGTGCGTGTT------------T-GG----ATGTACGTATCT
droSec2	scaffold_9:3087726-3087975 +		TT-----GGATCGG-----A----------------------------TCGGATCGTCGGTGAA--GGCGAG---TTCC--AGGCGCTTGCCCAAGTAAATCGAATCGAGTGAATCC--------------GCTG-----------------------TC-CC-----------CCAAAAGCATTCCC-G----------------------------------------------------CACGAGTGCCCGGGTGTCCAGT--------------------------GGC-TGGCCTGG--------------------------------------------GCGGGCACATCCTCGG--------------------------------------GTTAGATAACAC---------CGT-CCAGACCATCCTGCTCC-------ACC------------ACCACCACCACCACCACCTCTGCG----TAT------------------------GTATGTACATGCGTGCGTATGTGAGTGTT------------T-GG----ATGTACGTATCT
dm3	chr2R:19796105-19796352 +		TT-----GGATCGG-----A----------------------------TCGGATCGTCGGTGAA--GGCGAA---TTCC--AGGCGCTTGCCCAAGTAAATCGAATCGAGTGAATCC--------------GCTG-----------------------TC-CC-----------CCAAAAGCATTCCC-G----------------------------------------------------CACGAGTGTCCGGATGTCCAGT--------------------------GGC-TGGCCTGG--------------------------------------------GCGGGCACATCCTCGG--------------------------------------GTTAGATAACAC---------CGT-CCAGTCCATCCTGTTCC-------GCC------------AC------CACCACCACCTCTGCG----TAT----GTAC----------------ATATGTACATGCGTGCGTATGTGCGTGTT------------T-GG----ATGTACGTATCT
droEre2	scaffold_4845:21176394-21176665 +		CTAGAGCGGATTGG-----A----------------------------TTGGATCGTCGGTGAA--GGCGAG---TTGA--AGGCGCTTGCCCAAGTAAATCGAATC------------------------------------------------------CCCCAGCCAAGGGCCAAAAGCATTCCC-G----------------------------------------------------CACAAG--------TGTCCAGTGCCCCGCCTGGCCTGGCCTGTCCTGGC-C-TGGTCTGG--------------------------------------------GTGGGCACGTCCTCGG--------------------------------------GTTAGGTAACAC---------CGT-CCAGTCTATCCTGC-------------------------ACAACCA---------CTTCTACG----TACATATCTGCGTATCTACGTACGAGTAT------GTGCGTGCGTGTGTA--------------CACAT-GCGGACTTGGATGTATCT
droYak3	2R:19781105-19781399 +		TT-----GGATCGGATTGGAGAGGATTGAAGAGGAGTGGAGCGGATTGTTGGATCGTCGGTGAA--GGCGAG---TTGA--AGGCGCTTGCCCAAGTAAATCGAATC------------------------------------------------------CCCCAGCCAAGGGCCAAAAGCATTCCC-GCACGA-------------------------------------------------CGAGTGTCCA-GTGTCCAGTGCCTCGCCTAG----------------CC-TGGCCTGG--------------------------------------------GTGGGCACGTCCTCGG--------------------------------------GTTAGGTAACAC---------CGT-CCAGTCCATCCTGC----------------------------------ACCACCACCTCTACGTAGCTAC----GTACATATCTGCGTACGAGTAT------GTGCGTGCGTGTGTG--------------CACAT-GCGGACTTGGATGTATCT
droEug1	scf7180000409464:176727-177017 +		---------------------------------------------------GATCGTCGGTGAAA-AGCGAG---TTCA--AGGCGCTTGCTCAAGTAAATAGAATAAAA----TTC--------------GCTGCGCGTAAACATTACATTT-----T--CCCC------GAGCCAAAAGCGTTCTC-GATTCATTTTGTATTC---------------CGTATTAAGTATTTTGCTGCTGTATGTATAGCTGATTGTTCAGT--------------------------G--TTTGACGAAGTG--ATT-TT------------------------------------GCTATATCC-CGGATCGAA------CCTTTCC-GA-TT----AACAGA--CGTTAGATAATAC---------AGT-AGA------------CTGGTTC-TAA-GCACC---ACGCTCATCCT-------------T----ATGTAC------------------------------------ATA----------------------TGTAT-GTAGATATGGATGTATCT
droBia1	scf7180000302143:328684-328986 +		-------------G-----A----------------------------GTGGATCGACGGTGAA--AGCGAG---TTCA--AGGCGCTTGCTCAAGTAAATGGAAA-AAAT---TTC--------------GCTGCGCGTAAACATTACGTT------C--CCCC------GGGCCAAAAGCATTCCC-GATTTCGT------------------------------------------CCGTATGTACGGCTGCTTGTTCAGT--------------------------G--CTGCACGACGTG--ATT-CC------------------------------------TCCATGTCCCCGGATCGAAATCGAACCCTT-C-GGCCT----GACAGACGCGTTAGATAATACGCGCTTTTCCAT-CCAGTTT---GGGCTCTGGCTC-TAC-GTGCG---TCGCTCATCCT-------------T----CGCTAC------------------------------------ATAC-------------ACACGCTGTGTAT-GTGGGCTTGGACGTGTCT
droTak1	scf7180000415878:923370-923661 +		--------------------------------------------------GGATCGTCGGTGAAA-AGCGAG---TTCA--AGGCGCTTGCTCAAGTAAATAGAATAAAAT---TTC--------------GCTGCGCGTAAACATTACATTT-----T--TCCC------GTGCCAAAAGCATTCCC-GATTTATT------------------------------------------CTGTATGTATGGCTGATTGTTC--------------------------------------GATGTG--ATT-TA------------------------------------CCTATATCCCCGGATCGAAATCGAACCCTT---GG-CT----GAGGGA--CGTTAGATAATACGCGCTTTTCCAT-CCAGTTTT--TGGCTCTGATTC-TAC-GTGCGTCGTCGCTCATCCT-------------T----AACTAC------------------------------------ATAC-------------ATATGATATGTAT-GTAGATATGGATGTATCT
droEle1	scf7180000491214:5282095-5282423 -		--------------------------------------------------GGATCGTCGGTGAAATAGCGAG---TTCAAAAGGCGCTTGCTCAAGTAAATGGAATAAAAT---TTC--------------GCTGCGCGTAAACATTACATTTCAGTTTTCCCCC------GCACCACAAGCATTCCC-GATGTATT-CGTATTCCCAATCCAATCCAAACCAATCCAAT---------CCGTATGTATGGCTGATTGTTCAGT--------------------------G--CTGGACGAAGTG--ATT-TG------------------------------------GCTATATCCGCGGATCGAA------CCCTTTT-GGTTC----TCTAGA--TGTTAGATAATACGCGCTTTTCCAG-CCAGTTTC--TGGTTCTGGTA----------------------------------------CTTATGTAC----------------------------ATGCATACATACATATGTATA------------TGTAT-GGAAATATGAATGTATCT
droRho1	scf7180000777217:27313-27618 -		--------------------------------------------------GGATCGTCGGTGAAATAGCGAG---TTCAAAAGGCGCTTGCTCAAGTAAATGGAATAAAAT---TTC--------------GCTGCGCGTAAACATTACATTT-----TC-CCCC------GTACCACAAGCATTCCC-GATGTATT-C---------------------CCAATCCAAT---------CCGTATGTATGGCTGATTGTTCAGT--------------------------G--CTGGACGAAGTG--ATT-TG------------------------------------GCTATATCCGCGGATCGAA------CCCTTTTTGT-TT----TATAGA--TGTTAGATAATAAGCGCTTTTCCAG-CCAGTTTT--TGGTTCTGGTA----------------------------------------CA----TAT----GTAT----------------GTATATACATACCTACATATAGATT------------TATAT-GGAAATATGAATGTATCT
droFic1	scf7180000453858:1541008-1541228 +		--------------------------------------------------GGATCGACGGTGAAA-AGCGAGTTGTTCA--AGGCGCTTGCTCAAGTAAATGGAAAAAAAT---TTC--------------GCTGCGCGTAAACATTATATTT-----T--CCCC------GAGCCAAAAGCATTCCC-GACTTGTT------------------------------------------CCGTACGTATGTCTGATTGTTCAGG--------------------------A--CTGCAGGAAGTG--ATT-TC------------------------------------CGTACATCCGCGGATCGAA-TCGAACCCTT-T-GGCCTTAAATATATA--TATTAGATAATATGCGCTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302355:384620-384926 +		T-------------------------------------------------GGATCGTCGGTGATT-TGCGAG---TTCA--AGGCGCTTGCTCAAGTAAATGGAATAAAAT---T-CGTGCTGTGTCTGGGGCTGCGCGTAAACATTACATTT-----TCCCCCC------GTATCAGAGGCATTCCC-GATGTACAT-------------------------T-------------GG-CGTATGTATGA-------------------------------------------------ATGTGTGATTGTGTGTCTCTTGTTGGGGACTGCTTCTCTTTGGGCCGCAGGCTGACCCACGGATCGAA-CAGAACCCTT-T-AATC-----CATCAA--TGTTAGATAATATGCGCGATTCCAG-TCA---------------------------------------TCC------------TTTGCA----TAC------------------------ATATCTACATTTGT------------------------ACATCGTAGATATAAATGTATCT
droAna3	scaffold_13266:5667500-5667797 +		--------------------------------------------------GGATCGTCGGTGAT--TT---C---TTCA--AGGCGCTTGCTCAAGTAAATGAAATAAAAT---TTC--------------GCTGCGCGTCAACATTACATTT-----T--TCCC------GTATCAATAGCGTTCCCCAATGTACAT-------------------------ATC-----------CG-CGTATGTATGACTGATTGTTCAGT--------------------------GGG-CTACCGATGTGAGATT-TGCGTTAATTGTGCGGTACTCC-------------------AGGTTTATGGATCGAA----AACTCTT-T-GATTT----AATTAA--TGTTAGATAATAAGCGCTATTCCAGACCAGGTGT----CATCTGATTTTTAC-GTTAG----CCCCCGTCCT-------------T----TACTAC------------------------------------ATGC-------------AC------T-------------G--CGTGTAA
droBip1	scf7180000396372:282176-282469 +		--------------------------------------------------GGATCGTCGGAGAT-----TTG---TTCA--AGGCGCTTGCTCAAGTAAATGGAATTAAAT---TTC--------------GATGCGCGTCAACATTACATTT-----T--TCCC------GTATCAAAAGCGTTCCCCCATGTACAT-------------------------ATC-----------CG-CGTATGTCTGGCTGATTGTTAAGT--------------------------G--GTTCCCGATGTGAGATT-TGCGTTAATTGTGCGGTACTGC-------------------AGGTTTATGGATCGAA----AACTCTT-T-GATTT----AATTGA--TGTTAGATAATAAGCGCTGTTCCAG-CCAGGTGT----CATCTGCTTTTTAC-TTTCG----C-CCCGTCCT-------------T----TACTAC------------------------------------ATGC-----------------------------------GCGTGTAAAT
droWil2	scf2_1100000004514:1187472-1187528 -		T----------------------------------------------------------------------------------------ACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----AAGTAT----GTACATATGT--------ATGT--------ATGTATGTA------------------TGTAC-ATACATATGTATGTATAT
droMoj3	scaffold_6496:14937270-14937304 +		T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATG------------TGT----------------GTATATGTATATGTGCATGT---------------------------------GTGCGTGT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TT-----GGATCGG-----A----------------------------TCGGATCGTCGGTGAA--GGCGAG---TTCC--AGGCGCTTGCCCAAGTAAATCGAATCGAGTGAATCC--------------GCTG-----------------------TC-CC-----------CCAAAAGCATTCCC-G----------------------------------------------------CACGAGTGTCCGGGTGTCCAGT--------------------------GGC-TGGCCTGG--------------------------------------------GCGGGCACATCCTCGG--------------------------------------GTTAGATAACAC---------CGT-CCAGTCCATCCTGCTCC-------ACC------------ACGACCACCACCACCACCTCTGCG----TAT------------------------GTATGTACATGCGTGCGTATGTGCGTGTT------------T-GG----ATGTACGTATCT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................CGTCGGTGAA--GGCGAG---TTCC--AGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............G-----A----------------------------TCGGATCGTCGGTGAA--GGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................GTCGGTGAA--GGCGAG---TTCC--AGGCGCTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.........ATCGG-----A----------------------------TCGGATCGTCGGTGAA--GGCGAG---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............G-----A----------------------------TCGGATCGTCGGTGAA--GA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................CGTCGGTGAA--GGCGAG---TTCC--AGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................GTAAATCGAATCGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	16	13	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TT-----GGATCGG-----A----------------------------TCGGATCGTCGGTGAA--GGCGAG---TTCC--AGGCGCTTGCCCAAGTAAATCGAATCGAGTGAATCC--------------GCTG-----------------------TC-CC-----------CCAAAAGCATTCCC-G----------------------------------------------------CACGAGTGCCCGGGTGTCCAGT--------------------------GGC-TGGCCTGG--------------------------------------------GCGGGCACATCCTCGG--------------------------------------GTTAGATAACAC---------CGT-CCAGACCATCCTGCTCC-------ACC------------ACCACCACCACCACCACCTCTGCG----TAT------------------------GTATGTACATGCGTGCGTATGTGAGTGTT------------T-GG----ATGTACGTATCT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......................................................CGTCGGTGAA--GGCGAG---TTCC--AGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	0	4	0
..........TCGG-----A----------------------------TCGGATCGTCGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0
......................................................CGTCGGTGAA--GGCGAG---TTCC--AGGCGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
.................................................CGGATCGTCGGTGAA--GGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.............................................................GAA--GGCGAG---TTCC--AGGCGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.........................................................CGGTGAA--GGCGAG---TTCC--AGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
...................................................GATCGTCGGTGAA--GGCGAG---TTCC--AGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
............................................................TGAA--GGCGAG---TTCC--AGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.........................................................CGGTGAA--GGCGAG---TTCC--AGGCGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
..........................................................GGTGAA--GGCGAG---TTCC--AGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0

dm3

TT-----GGATCGG-----A----------------------------TCGGATCGTCGGTGAA--GGCGAA---TTCC--AGGCGCTTGCCCAAGTAAATCGAATCGAGTGAATCC--------------GCTG-----------------------TC-CC-----------CCAAAAGCATTCCC-G----------------------------------------------------CACGAGTGTCCGGATGTCCAGT--------------------------GGC-TGGCCTGG--------------------------------------------GCGGGCACATCCTCGG--------------------------------------GTTAGATAACAC---------CGT-CCAGTCCATCCTGTTCC-------GCC------------AC------CACCACCACCTCTGCG----TAT----GTAC----------------ATATGTACATGCGTGCGTATGTGCGTGTT------------T-GG----ATGTACGTATCT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................................GGTGAA--GGCGAA---TTCC--AGGCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................CGTCGGTGAA--GGCGAA---TTCC--AGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................AGTGTCCGGATGTCCAGT--------------------------GGC-..............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTGCGTGTT------------T-GG----AT..........	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATGTGCGTGTT------------T-GG----ATGTACG.....	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................GTGAA--GGCGAA---TTCC--AGGCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................AATCGAGTGAATCC--------------GCTG-----------------------TC-C..................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................GTCGGTGAA--GGCGAA---TTCC--AGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................................CGGTGAA--GGCGAA---TTCC--AG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.T-----GGATCGG-----A----------------------------TCGGATCGTCGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................T--------------------------GGC-TGGCCTGG--------------------------------------------GCGGGCACAT................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........ATCGG-----A----------------------------TCGGATCGTCGGTGAA--..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CTAGAGCGGATTGG-----A----------------------------TTGGATCGTCGGTGAA--GGCGAG---TTGA--AGGCGCTTGCCCAAGTAAATCGAATC------------------------------------------------------CCCCAGCCAAGGGCCAAAAGCATTCCC-G----------------------------------------------------CACAAG--------TGTCCAGTGCCCCGCCTGGCCTGGCCTGTCCTGGC-C-TGGTCTGG--------------------------------------------GTGGGCACGTCCTCGG--------------------------------------GTTAGGTAACAC---------CGT-CCAGTCTATCCTGC-------------------------ACAACCA---------CTTCTACG----TACATATCTGCGTATCTACGTACGAGTAT------GTGCGTGCGTGTGTA--------------CACAT-GCGGACTTGGATGTATCT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................................CGTCGGTGAA--GGCGAG---TTGA--AGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	2	2	0
CTAGAGCGGATTGG-----A----------------------------TTGGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	2	0	1	0
......................................................CGTCGGTGAA--GGCGAG---TTGA--AGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	1	0	0	1	0	1	0
..................................................................................................................................................................................................................................................................................................C-C-TGGTCTGG--------------------------------------------GTGGGCACGT................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
..AGAGCGGATTGG-----A----------------------------TTGGATCGTCGGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
.......GGATTGG-----A----------------------------TTGGATCGTCGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
CTAGAGCGGATTGG-----A----------------------------TTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
..........................................................GGTGAA--GGCGAG---TTGA--AGGCGCTTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
.TAGAGCGGATTGG-----A----------------------------TTGGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
..AGAGCGGATTGG-----A----------------------------TTGGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTA--------------CACAT-GCGGACTTGGATGTATC.	27	1	1.00	1	0	0	0	0	1	0	0
............GG-----A----------------------------TTGGATCGTCGGTGAA--GGCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
......................................................................AG---TTGA--AGGCGCTTGCCCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
...GAGCGGATTGG-----A----------------------------TTGGATCGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0

droYak3

TT-----GGATCGGATTGGAGAGGATTGAAGAGGAGTGGAGCGGATTGTTGGATCGTCGGTGAA--GGCGAG---TTGA--AGGCGCTTGCCCAAGTAAATCGAATC------------------------------------------------------CCCCAGCCAAGGGCCAAAAGCATTCCC-GCACGA-------------------------------------------------CGAGTGTCCA-GTGTCCAGTGCCTCGCCTAG----------------CC-TGGCCTGG--------------------------------------------GTGGGCACGTCCTCGG--------------------------------------GTTAGGTAACAC---------CGT-CCAGTCCATCCTGC----------------------------------ACCACCACCTCTACGTAGCTAC----GTACATATCTGCGTACGAGTAT------GTGCGTGCGTGTGTG--------------CACAT-GCGGACTTGGATGTATCT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................................................GGTGAA--GGCGAG---TTGA--AGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	1	1	0	0	1	0	0	0	0
........................ATTGAAGAGGAGTGGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
......................................................CGTCGGTGAA--GGCGAG---TTGA--AGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
...................................GTGGAGCGGATTGTTGGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...................................GTGGAGCGGATTGTTGGATCGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.................................GAGTGGAGCGGATTGTTGGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................CGGTGAA--GGCGAG---TTGA--AGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
................................GGAGTGGAGCGGATTGTTGGATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................TGGAGCGGATTGTTGGATCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................GGAGCGGATTGTTGGATCGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................ATTGTTGGATCGTCGGTGAA--GAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................AGAGGATTGAAGAGGAGTGGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.......................GATTGAAGAGGAGTGGAGCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................GTCGGTGAA--GGCGAG---TTGA--AGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........ATCGGATTGGAGAGGATTGAAGAGGAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................GATCGTCGGTGAA--GGCGAG---TTGA--AGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......GGATCGGATTGGAGAGGATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................GTGAA--GGCGAG---TTGA--AGGCGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............TTGGAGAGGATTGAAGAGGAGTGGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................AGGATTGAAGAGGAGTGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................GCGGATTGTTGGATCGTCGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................ATCGTCGGTGAA--GGCGAG---TTGA--AGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................GGAGTGGAGCGGATTGTTGGATCGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................ATTGAAGAGGAGTGGAGCGGATTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................GTGGAGCGGATTGTTGGATCGTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................CGTCGGTGAA--GGCGAG---TTGA--AGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................GAGGATTGAAGAGGAGTGGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

---------------------------------------------------GATCGTCGGTGAAA-AGCGAG---TTCA--AGGCGCTTGCTCAAGTAAATAGAATAAAA----TTC--------------GCTGCGCGTAAACATTACATTT-----T--CCCC------GAGCCAAAAGCGTTCTC-GATTCATTTTGTATTC---------------CGTATTAAGTATTTTGCTGCTGTATGTATAGCTGATTGTTCAGT--------------------------G--TTTGACGAAGTG--ATT-TT------------------------------------GCTATATCC-CGGATCGAA------CCTTTCC-GA-TT----AACAGA--CGTTAGATAATAC---------AGT-AGA------------CTGGTTC-TAA-GCACC---ACGCTCATCCT-------------T----ATGTAC------------------------------------ATA----------------------TGTAT-GTAGATATGGATGTATCT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

-------------G-----A----------------------------GTGGATCGACGGTGAA--AGCGAG---TTCA--AGGCGCTTGCTCAAGTAAATGGAAA-AAAT---TTC--------------GCTGCGCGTAAACATTACGTT------C--CCCC------GGGCCAAAAGCATTCCC-GATTTCGT------------------------------------------CCGTATGTACGGCTGCTTGTTCAGT--------------------------G--CTGCACGACGTG--ATT-CC------------------------------------TCCATGTCCCCGGATCGAAATCGAACCCTT-C-GGCCT----GACAGACGCGTTAGATAATACGCGCTTTTCCAT-CCAGTTT---GGGCTCTGGCTC-TAC-GTGCG---TCGCTCATCCT-------------T----CGCTAC------------------------------------ATAC-------------ACACGCTGTGTAT-GTGGGCTTGGACGTGTCT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

--------------------------------------------------GGATCGTCGGTGAAA-AGCGAG---TTCA--AGGCGCTTGCTCAAGTAAATAGAATAAAAT---TTC--------------GCTGCGCGTAAACATTACATTT-----T--TCCC------GTGCCAAAAGCATTCCC-GATTTATT------------------------------------------CTGTATGTATGGCTGATTGTTC--------------------------------------GATGTG--ATT-TA------------------------------------CCTATATCCCCGGATCGAAATCGAACCCTT---GG-CT----GAGGGA--CGTTAGATAATACGCGCTTTTCCAT-CCAGTTTT--TGGCTCTGATTC-TAC-GTGCGTCGTCGCTCATCCT-------------T----AACTAC------------------------------------ATAC-------------ATATGATATGTAT-GTAGATATGGATGTATCT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

--------------------------------------------------GGATCGTCGGTGAAATAGCGAG---TTCAAAAGGCGCTTGCTCAAGTAAATGGAATAAAAT---TTC--------------GCTGCGCGTAAACATTACATTTCAGTTTTCCCCC------GCACCACAAGCATTCCC-GATGTATT-CGTATTCCCAATCCAATCCAAACCAATCCAAT---------CCGTATGTATGGCTGATTGTTCAGT--------------------------G--CTGGACGAAGTG--ATT-TG------------------------------------GCTATATCCGCGGATCGAA------CCCTTTT-GGTTC----TCTAGA--TGTTAGATAATACGCGCTTTTCCAG-CCAGTTTC--TGGTTCTGGTA----------------------------------------CTTATGTAC----------------------------ATGCATACATACATATGTATA------------TGTAT-GGAAATATGAATGTATCT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

--------------------------------------------------GGATCGTCGGTGAAATAGCGAG---TTCAAAAGGCGCTTGCTCAAGTAAATGGAATAAAAT---TTC--------------GCTGCGCGTAAACATTACATTT-----TC-CCCC------GTACCACAAGCATTCCC-GATGTATT-C---------------------CCAATCCAAT---------CCGTATGTATGGCTGATTGTTCAGT--------------------------G--CTGGACGAAGTG--ATT-TG------------------------------------GCTATATCCGCGGATCGAA------CCCTTTTTGT-TT----TATAGA--TGTTAGATAATAAGCGCTTTTCCAG-CCAGTTTT--TGGTTCTGGTA----------------------------------------CA----TAT----GTAT----------------GTATATACATACCTACATATAGATT------------TATAT-GGAAATATGAATGTATCT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

--------------------------------------------------GGATCGACGGTGAAA-AGCGAGTTGTTCA--AGGCGCTTGCTCAAGTAAATGGAAAAAAAT---TTC--------------GCTGCGCGTAAACATTATATTT-----T--CCCC------GAGCCAAAAGCATTCCC-GACTTGTT------------------------------------------CCGTACGTATGTCTGATTGTTCAGG--------------------------A--CTGCAGGAAGTG--ATT-TC------------------------------------CGTACATCCGCGGATCGAA-TCGAACCCTT-T-GGCCTTAAATATATA--TATTAGATAATATGCGCTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

T-------------------------------------------------GGATCGTCGGTGATT-TGCGAG---TTCA--AGGCGCTTGCTCAAGTAAATGGAATAAAAT---T-CGTGCTGTGTCTGGGGCTGCGCGTAAACATTACATTT-----TCCCCCC------GTATCAGAGGCATTCCC-GATGTACAT-------------------------T-------------GG-CGTATGTATGA-------------------------------------------------ATGTGTGATTGTGTGTCTCTTGTTGGGGACTGCTTCTCTTTGGGCCGCAGGCTGACCCACGGATCGAA-CAGAACCCTT-T-AATC-----CATCAA--TGTTAGATAATATGCGCGATTCCAG-TCA---------------------------------------TCC------------TTTGCA----TAC------------------------ATATCTACATTTGT------------------------ACATCGTAGATATAAATGTATCT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

--------------------------------------------------GGATCGTCGGTGAT--TT---C---TTCA--AGGCGCTTGCTCAAGTAAATGAAATAAAAT---TTC--------------GCTGCGCGTCAACATTACATTT-----T--TCCC------GTATCAATAGCGTTCCCCAATGTACAT-------------------------ATC-----------CG-CGTATGTATGACTGATTGTTCAGT--------------------------GGG-CTACCGATGTGAGATT-TGCGTTAATTGTGCGGTACTCC-------------------AGGTTTATGGATCGAA----AACTCTT-T-GATTT----AATTAA--TGTTAGATAATAAGCGCTATTCCAGACCAGGTGT----CATCTGATTTTTAC-GTTAG----CCCCCGTCCT-------------T----TACTAC------------------------------------ATGC-------------AC------T-------------G--CGTGTAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................CGGTGAT--TT---C---TTCA--AGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0
.......................................................GTCGGTGAT--TT---C---TTCA--AGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
......................................................CGTCGGTGAT--TT---C---TTCA--AGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0

droBip1

--------------------------------------------------GGATCGTCGGAGAT-----TTG---TTCA--AGGCGCTTGCTCAAGTAAATGGAATTAAAT---TTC--------------GATGCGCGTCAACATTACATTT-----T--TCCC------GTATCAAAAGCGTTCCCCCATGTACAT-------------------------ATC-----------CG-CGTATGTCTGGCTGATTGTTAAGT--------------------------G--GTTCCCGATGTGAGATT-TGCGTTAATTGTGCGGTACTGC-------------------AGGTTTATGGATCGAA----AACTCTT-T-GATTT----AATTGA--TGTTAGATAATAAGCGCTGTTCCAG-CCAGGTGT----CATCTGCTTTTTAC-TTTCG----C-CCCGTCCT-------------T----TACTAC------------------------------------ATGC-----------------------------------GCGTGTAAAT	Size	Hit Count	Total Norm	Total
No Reads

droWil2

T----------------------------------------------------------------------------------------ACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----AAGTAT----GTACATATGT--------ATGT--------ATGTATGTA------------------TGTAC-ATACATATGTATGTATAT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droMoj3

T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATG------------TGT----------------GTATATGTATATGTGCATGT---------------------------------GTGCGTGT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATGTGCATGT---------------------------------GTGCGT..	20	1	1.00	1	0	0	0	0	0	1

dsi_4370

2r:20304547-20304696 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads