ID:

dsi_4368

 Coordinate:

3l:8248246-8248395 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-31.4 -31.2 -31.2

Flybase annnotation

five_prime_UTR [3l_8248433_8248616_-]; CDS [3l_8248396_8248432_-]; exon [3l_8248396_8248616_-]; intron [3l_8243857_8248395_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACGGATCCTCAAAATGTGCGACGAGTCCATTGAAAATGTGGAGCATCAAGGTAAAAATTAGTAACTCCAATTCCCGGTGTTATTTGCCCAACTCATTTGTTTGGCCATTAAGTGGCGCCCCATATTTGCATAGAAACCAGCTCAAGTGCGTTAAAATATCATTAGGAAAAGGCGGCGGTTGTGGCTGTAGATTCTTTGGTAGCAGGGAAAAAGGGTAAGTGGGGGTAATTGCGCGTGGATTTTGGCGATT
**************************************************.........((((((.((.......)).))))))...((((...(((((...((((((.((.((.((((((.((..((.(((.......((......)).......))))).))))....)))).)).)))))))).)))))...)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M053
female body
 SRR902008
ovaries
 SRR902009
testis
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
....................................................................................................................................................................................................................................TCACGCATGGATTTTGGCGATT 22 3 1 1.00 1 0 0 0 0 1 0 0 0
..................................................................................................................................................................................TTCTAGCTGTAGATTCTTTGGTA................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0 0
......CCTCAAAATGTGCGACGAGTCCA............................................................................................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................TTTGGTAGCAGGGAAAAAGGACAA................................ 24 2 1 1.00 1 0 0 1 0 0 0 0 0
................................................................................................................................................................ATTAGGAAAAGGCGGCGGTTG..................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................TGGTAGCCGGGAAAAA...................................... 16 1 4 0.25 1 0 0 0 0 0 1 0 0
..............TGTGCGACGCGTCCA............................................................................................................................................................................................................................. 15 1 6 0.17 1 0 0 0 0 0 0 1 0
.................................AAATATGGAGCGTCAAG........................................................................................................................................................................................................ 17 2 18 0.06 1 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................TTTGGTAGCCGGGAGAA....................................... 17 2 18 0.06 1 1 0 0 0 0 0 0 0
....................................CGTGGAGGATCAAGGT...................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1
.................GCGAGAAGTCCATTGAA........................................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 1
..............................................................AAGTAGAATTCCCGGTGT.......................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0

Anti-sense strand reads

TGCCTAGGAGTTTTACACGCTGCTCAGGTAACTTTTACACCTCGTAGTTCCATTTTTAATCATTGAGGTTAAGGGCCACAATAAACGGGTTGAGTAAACAAACCGGTAATTCACCGCGGGGTATAAACGTATCTTTGGTCGAGTTCACGCAATTTTATAGTAATCCTTTTCCGCCGCCAACACCGACATCTAAGAAACCATCGTCCCTTTTTCCCATTCACCCCCATTAACGCGCACCTAAAACCGCTAA
**************************************************.........((((((.((.......)).))))))...((((...(((((...((((((.((.((.((((((.((..((.(((.......((......)).......))))).))))....)))).)).)))))))).)))))...)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
.........................................................................................................................................GTCGAGTTCACGCAATTTTAT............................................................................................ 21 0 1 1.00 1 1 0 0 0
...........................................................................................................AATTCATCGAGGGGTATATACG......................................................................................................................... 22 3 1 1.00 1 0 1 0 0
........................................CTCGCAGTTCCAGTTTT................................................................................................................................................................................................. 17 2 16 0.06 1 0 0 1 0
..............................................................................................................TCACCGCTGGGTAGAAAG.......................................................................................................................... 18 3 20 0.05 1 0 0 1 0
.............................................................................................................................AACGTAACTTTGGTCGGGTC......................................................................................................... 20 3 20 0.05 1 0 0 1 0
.................................................................................................................................................................................CAGCACTGACATCTGAGA....................................................... 18 3 20 0.05 1 0 0 0 1

Generated: 04/24/2015 at 10:46 AM