ID:

dsi_4356

Coordinate:

2r:9713524-9713673 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [2r_9713267_9713523_-]; CDS [2r_9713267_9713523_-]; intron [2r_9713524_9714050_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACCTGATAAATTTATAAAATATTTATTATTAATTTCAATGCTCGAAAGTATACAGAAAGCAAATTCCAGTGTAAGGCTGTGTGACCGTTGTGCGCTTGATTTGGATTGGTATTTTTCCCAATACACTTGCCGTTCATCCAGCTGGACCATTTTTTTGCACTCAGATCTTGGTCTTACCAATCCGATTCTTCATTGAACAGCAACGAAGGAATTCGCAGAGAGTTCTGAGCGCAGCAATAGCAGCAAGAAG
**************************************************.................((((((.(((.((...)).))).)))))).((.(((((((((((.......(((.....)))..............((((((....((((....))))...))))))))))))))))).))............**************************************************
Read size # Mismatch Hit Count Total Norm Total M023
head
SRR618934
dsim w501 ovaries
M024
male body
M025
embryo
M053
female body
O001
Testis
O002
Head
SRR902009
testis
SRR553488
RT_0-2 hours eggs
SRR553487
NRT_0-2 hours eggs
.....................................................................................................................................................................................................................CGCAGAGAGTTCTGAGCG................... 18 0 1 13.00 13 10 0 3 0 0 0 0 0 0 0
.................................................................................................................................................................................................TGAACAGCAACGAAGGAA....................................... 18 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TTCGCAGAGAGTTCTGAGC.................... 19 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TTCGCAGAGAGTTCTGAGCG................... 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGCAGAGAGTTCTGAGCGC.................. 19 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGCAGAGAGTTCTGAGCGCA................. 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ATTCGCAGAGAGTTCTGAGCG................... 21 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ATTCGCAGAGCGTTCTGAGC.................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CAGCAACGAAGGAATTCG................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AACGAAGGAATTCGCAGA............................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ATTCGCAGAGAGTTCTGAG..................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................AATTCGCAGAGAGTTCTGAGCGCAGCA.............. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................GAATTCGCAGAGAGTTCTGAGCGCAGC............... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GCAACGAAGGAATTCGCA................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................CTTCATTGAACAGCAACGAA........................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGCAGAGAGTTCTGAGCGCAG................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................TTCATTGAACAGCAACGAAG.......................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................ATTGAACAGCAACGAAGGAAT...................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................GAGCGCAGCAATAGCAGCAAGAA. 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................GCAGAGAGTTCTGAGCGC.................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGCAGAGAGTTCTGAGCGCAGCAATA........... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................GAACAGCAACGAAGGAATTCG................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTCATTGAACAGCAACGA............................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................ATTGAACAGCAACGAAGGAATTCGCA................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TCTGAGCGCAGCAATAGC......... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GACTTACCAATCCGAT................................................................ 16 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................CAGCTGGATCATTTTT................................................................................................ 16 1 4 0.25 1 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................AGCTGCGAAGGAATTCGC.................................. 18 2 11 0.09 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................CGTTCATCCAGCCGG......................................................................................................... 15 1 12 0.08 1 0 0 0 0 0 0 0 0 1 0
...................................................................AGTGTAAGGGTGTGT........................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1
..................................................................GACTGTAAGGCTGTGT........................................................................................................................................................................ 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

TGGACTATTTAAATATTTTATAAATAATAATTAAAGTTACGAGCTTTCATATGTCTTTCGTTTAAGGTCACATTCCGACACACTGGCAACACGCGAACTAAACCTAACCATAAAAAGGGTTATGTGAACGGCAAGTAGGTCGACCTGGTAAAAAAACGTGAGTCTAGAACCAGAATGGTTAGGCTAAGAAGTAACTTGTCGTTGCTTCCTTAAGCGTCTCTCAAGACTCGCGTCGTTATCGTCGTTCTTC
**************************************************.................((((((.(((.((...)).))).)))))).((.(((((((((((.......(((.....)))..............((((((....((((....))))...))))))))))))))))).))............**************************************************
Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
SRR902009
testis
SRR553488
RT_0-2 hours eggs
SRR1275485
Male prepupae
SRR1275487
Male larvae
SRR618934
dsim w501 ovaries
SRR553485
Chicharo_3 day-old ovaries
SRR553486
Makindu_3 day-old ovaries
..........................................................................................................................................................................CAGAGTGGTTAGGCT................................................................. 15 1 5 3.80 19 16 0 3 0 0 0 0 0
................................................................................................................................................................................GGTTAGGCTAAGAAGTAACTT..................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................TATGGTTAGGCTAAGAAGTAAC....................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................TCAGAGTGGTTAGGCT................................................................. 16 2 20 0.25 5 5 0 0 0 0 0 0 0
....................................................................................................................GGGTTATGGGAAGGGAAAGT.................................................................................................................. 20 3 8 0.13 1 0 0 0 1 0 0 0 0
....................................................................................................................GGGTTATGTGAAGGGAA..................................................................................................................... 17 2 8 0.13 1 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................CTCAGGACTCGCGTC................ 15 1 10 0.10 1 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................TCTCAGGACTCACGTCG............... 17 2 17 0.06 1 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................AGTAGTAACTTGTCGG................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 1
................................................................................................................AAAAGGAGTATGTGAAC......................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:9713474-9713723 - dsi_4356 AC-----CTGATAAATT----------TATAAAATATTTAT--TATTAATTTCAATGC----------TCGAAAGTATACAGAAAGC--------------------AA-----ATTCCAGTGTAA-----------------------GG------CTGTGTGACCGTTG-TGCGCTTGATTTGGATTGGTATTTTTCCCAATACACTTGCCG-TTCAT-------CCAGCTGGACCATTTTTTTGCACTCAGATCTTGGTCTTACC-----AATCCGATTCTTC-ATTGAA-CAGCAAC--GAA---GGAATTCGCAGAGAGTTCTGAGCGCAGCAATAGCAGCAAGAAG
droSec2 scaffold_1:6568606-6568846 - AT-----CTGATATATA----------TACAAAATATTGAT--TATCAATTTCAAAGC----------TCGAAAGTATACACAAAAA--------------------AA-----ATTCCAGTGTAA-----------------------GG------CTGTGTGACCGTTG-TGCGCTCGAATTGGATTGGTATTTTTCCCAATACACTTGCCG-TACAT-------CCAGCTGGACCATTTTTTTGCACTCAGATCTTGGTCTTA--------------TTCTTC-ATTGAA-CAGCAAC--GAA---GGAATTCGCAGAGAGTTCTGAGCGCAGCAATATCAGCAAGAAC
dm3 chr2R:9045732-9045981 - AG-----CTGATAAATG----------TACGCAATGTTTAT--AATCAATTTCAAAGC----------TCGAAAGTATATAGAAAAC--------------------AA-----ATTCCAGTGTAA-----------------------AG------CTGCGTGACCGTTT-TACGCTCTATTCGGGTTGGTATTTTTCCCAATGCACTTTTCG-TACAT-------CCAGCTGGACCATTTTTTTGCACTCAGATCTCGGTCTTACC-----AATCCGATTCTTC-ATTGAA-CAGCTAC--GAA---GGAATTCGCAGAGAGTTCTGAGCGCAGCAATAGCAGCAAGAAG
droEre2 scaffold_4845:16776334-16776583 + GCAA-----G-------------TAATTATCAAATTTGCAG--TACCTAGTACCATGTTTACACAGAATCGAAGTTTTATAGAAACC--------------------AA-----TTTTCAGTGTAA-----------------------GG------GCGTGTGACCGTTT-TACGTTCGATACAGATTGGCATTTTTCCCGCTGCACGAG--------T-------GCAGTTGCCCCATTTTTTTGCACTCACATCTCGGTCTTACC-----AATCCAATACTTC-ATTGAA-CAGCGAC--CAA---GGAATTCACAGAGAGTTCTCAGCGCAGCTACAGCAGCCAGAAG
droYak3 2R:7919638-7919906 + dya_491 AT-----TTAA-------AAAAGTGATTACTGAATTTTCAG--TACCTATGACACGGCTTACACAG--------------AGAGATATATTTACTTTAAAAAACTAAAA-----GTTTCAGTGTAA-----------------------GG------TTGTGCGACCGTTT-TGCGTTCGATCCCGATTGGTATTTTTCCCGGTACATTTGCGG-TACAT-------GCAGCTGCCCCATTTTTTTGCACTCACATCTCGGTCCTACC-----AATCCAATTCTTC-ATTGAA-CAGCGAC--CAA---GGAATTCGCAGAGAGTTCTGAGCGCAGCAACAGCAGCAAGCAG
droEug1 scf7180000409672:3540709-3540912 + AT-----TAGGCACAT-----------TACAAATTACATAT-------------------------------------------------------------------------TTTTCAGTGTAA-----------------------GG------TTGTGTTACCGTTTATATTTTTTATATGTTTTGGTAT------------ATTTGCGG-TGTATTGCCAAGTCAGTTGTTCCATTTTTTTGCACTCAAGTTTTGGTTCTACC-----A-----ATTCTCC-ATTGAA-CAGCGAC--CAG---GGAATTCGCACAGAGTTCTGAGCGCAACAGCAACAACAACAAG
droBia1 scf7180000302292:47092-47355 - AA-----TTGCTCAAATGAAA-------AGTCAATTCTTTTTATGTCAATTAAAAACT-----------------TCTCTAGTAACC--------------------AATTTTAATTTCAGTGTAT-----------------------AG------TAGTGTGACCAGTT-TACTTTCCAATCAGATTGGTATTTTT--CGGTATATTTGCGG-TGTTTTGCCTTGTCAGTAGTCCCGTTTTTTTGCACTCGAATCTCGGTCCTACCTTACGAATCCAATTCTCC-ATTGAAATAGCGAC--CAG---GGAATTCTCACAGAGTTCCGAGCGCAGCAACAACATCCAGCAC
droTak1 scf7180000415386:155545-155764 - AAAA-----TA--AAAAGAAA-------------------------------------------------GAAGATTTA------CA--------------------AG-----TTTTCAGTGTAA-----------------------GG------TTGTGTGACCACAT-AACGTCATAGTCGAGTTGGTATTTT-CCCGGTATACG--CGG-TGTTTTGCCTAGTCAGCTGCACCGTTTTTTTGCACTCAAGTTTCGGCC-TACC-----AATCGAATTCTCC-ATTGAA-TTGCACAGCCAG---GGATTTTGCAGAGAGTTCCGAGCGCAACAACAACACCGAGCAG
droEle1 scf7180000489694:396897-397073 + AA----------------------------------------------------------------------------------------------------------------ATGTCAGTGTAA-----------------------GGTACAATGTGTGTGACCGTAT-TTCATTCAATTCAGTTGGGTATTTT-CCGGGTATATTTAGCGGT-----------GTGACTG--TCATTTTTTTGCACTCAAGTCTCGGTCCTAC-----------AATTCTCC-ATT-AA-CAGTGAC--CAA---GGAATTCGCAGAGAGTTCCGACCGCAACAAC------AAGAAG
droRho1 scf7180000779872:291580-291719 + A------------------------------------------------------------------------------------------------------------------TTTCAGTGTTA-----------------------AATAAAATTTGTGTGACCAA---------CGATTTTGTTCGGTATTTT-GCCGGTA----------------------------------TATTTTTGCACTCAAGTCTCGGTCCTACC-----A-----ATTCTCC-ATTGAA-CAGCAAC--CAA---GGAATTCGCACAGAGTTCCGAGCGAAACA--------------
droFic1 scf7180000454066:214676-214944 + GCAACCATTGG-------AAA-----------AGTGTTTAT--TTTTTAG------------------TTGAGGATACAGAAATATCTATTTTTTGTATCAAACT---C-----TTATAAGTTTAATTTTTGTTAATTTTTTGTTGTTTGGAACCCTATATTTGACCCA---------TAAACAAGATAGGTAATAT-CTTAGTATATTTCACG---CAT-------TGAGTTGTTACATTTTTTTGCACTCAACTTTCGGTCTCACC-----A-----ATTGTCA-AACGAA-CAGCGAC--CAA---GGAATTCGCGCAGAGTTCCGACCGCTACAACAACAACGACAGC
droKik1 scf7180000302639:245335-245404 + TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATTCTCC-AA-AAA-CAGCGAG--CAGAAAAGAATTTGCAAAGTGTTCTGAGCGCAGCAACAACAACGAGA--
droAna3 scaffold_13266:6509997-6510070 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCAGGTCTCGGTCCCACT-----G-----GTTCCTCAATCGAA-CGGCAAC--CGA------------AGAAAGTTCTGAGTGCAACAAC------AAGAAA
droBip1 scf7180000396423:86011-86113 - TT-----T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCCGGTATTTCCACTTG-------------------------------------TATTCTTCAGTCAGGTCTCGGTCCCACT-----G-----GTTCTTCAATCGAA-CGGCAAC--CAA---AG---------AAAGTTCTGAGTGCAACAACAACAA-----AA
droGri2 scaffold_15245:10146966-10146980 + AA-----TTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTAATAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AC-----CTGATAAATT----------TATAAAATATTTAT--TATTAATTTCAATGC----------TCGAAAGTATACAGAAAGC--------------------AA-----ATTCCAGTGTAA-----------------------GG------CTGTGTGACCGTTG-TGCGCTTGATTTGGATTGGTATTTTTCCCAATACACTTGCCG-TTCAT-------CCAGCTGGACCATTTTTTTGCACTCAGATCTTGGTCTTACC-----AATCCGATTCTTC-ATTGAA-CAGCAAC--GAA---GGAATTCGCAGAGAGTTCTGAGCGCAGCAATAGCAGCAAGAAGSizeHit CountTotal NormTotalM023
Head
M024
Male-body
M025
Embryo
M053
Female-body
O001
Testis
O002
Head
SRR553485
Ovary
SRR553486
Ovary
SRR553487
Ovary
SRR553488
Ovary
SRR618934
Ovary
V044
Embryo
SRR902008
Ovary
SRR902009
Testis
SRR1275487
Male larvae
SRR1275485
Male prepupae
SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................CGCAGAGAGTTCTGAGCG...................18113.0013103000000000000000
.................................................................................................................................................................................................................................................................................................TGAA-CAGCAAC--GAA---GGAA.......................................1814.00440000000000000000
.........................................................................................................................................................................................................................................................................................................................TTCGCAGAGAGTTCTGAGC....................1914.00440000000000000000
.........................................................................................................................................................................................................................................................................................................................TTCGCAGAGAGTTCTGAGCG...................2013.00330000000000000000
...........................................................................................................................................................................................................................................................................................................................CGCAGAGAGTTCTGAGCGC..................1912.00200100000001000000
...........................................................................................................................................................................................................................................................................................................................CGCAGAGAGTTCTGAGCGCA.................2012.00220000000000000000
........................................................................................................................................................................................................................................................................................................................ATTCGCAGAGAGTTCTGAGCG...................2112.00211000000000000000
......................................................................................................................................................................................................................................................................................................CAGCAAC--GAA---GGAATTCG...................................1811.00100000000001000000
..........................................................................................................................................................................................................................................................................................................AAC--GAA---GGAATTCGCAGA...............................1811.00100000000001000000
........................................................................................................................................................................................................................................................................................................................ATTCGCAGAGAGTTCTGAG.....................1911.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................AATTCGCAGAGAGTTCTGAGCGCAGCA..............2711.00100100000000000000
......................................................................................................................................................................................................................................................................................................................GAATTCGCAGAGAGTTCTGAGCGCAGC...............2711.00101000000000000000
........................................................................................................................................................................................................................................................................................................GCAAC--GAA---GGAATTCGCA.................................1811.00100000000001000000
..........................................................................................................................................................................................................................................................................................CTTC-ATTGAA-CAGCAAC--GAA---...........................................2011.00110000000000000000
...........................................................................................................................................................................................................................................................................................................................CGCAGAGAGTTCTGAGCGCAG................2111.00100100000000000000
...........................................................................................................................................................................................................................................................................................TTC-ATTGAA-CAGCAAC--GAA---G..........................................2011.00100001000000000000
...............................................................................................................................................................................................................................................................................................ATTGAA-CAGCAAC--GAA---GGAAT......................................2111.00100000000000001000
........................................................................................................................................................................................................................................................................................................................................GAGCGCAGCAATAGCAGCAAGAA.2311.00100000100000000000
............................................................................................................................................................................................................................................................................................................................GCAGAGAGTTCTGAGCGC..................1811.00110000000000000000
...........................................................................................................................................................................................................................................................................................................................CGCAGAGAGTTCTGAGCGCAGCAATA...........2611.00101000000000000000
..................................................................................................................................................................................................................................................................................................GAA-CAGCAAC--GAA---GGAATTCG...................................2111.00100000000001000000
...........................................................................................................................................................................................................................................................................................TTC-ATTGAA-CAGCAAC--GA...............................................1811.00100000000001000000
...............................................................................................................................................................................................................................................................................................ATTGAA-CAGCAAC--GAA---GGAATTCGCA.................................2611.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................TCTGAGCGCAGCAATAGC.........1811.00110000000000000000
droSec2
AT-----CTGATATATA----------TACAAAATATTGAT--TATCAATTTCAAAGC----------TCGAAAGTATACACAAAAA--------------------AA-----ATTCCAGTGTAA-----------------------GG------CTGTGTGACCGTTG-TGCGCTCGAATTGGATTGGTATTTTTCCCAATACACTTGCCG-TACAT-------CCAGCTGGACCATTTTTTTGCACTCAGATCTTGGTCTTA--------------TTCTTC-ATTGAA-CAGCAAC--GAA---GGAATTCGCAGAGAGTTCTGAGCGCAGCAATATCAGCAAGAACSizeHit CountTotal NormTotalM054
Female-body
V113
Male-body
V114
Embryo
V115
Head
...........................................................................................................................................................................................................................................................................................................................CGCAGAGAGTTCTGAGCG...................1813.0030030
........................................................................................................................................................................................................................................................................................................................ATTCGCAGAGAGTTCTGAGCG...................2112.0021001
.................................................................................................................................................................................................................................................................................................................A---GGAATTCGCAGAGAGTT..........................1812.0020011
...................................................................................................................................................................................................................................................................................................AA-CAGCAAC--GAA---GGAATTCGC..................................2112.0020020
...............................................................................................................................................................................................................................................................................................ATTGAA-CAGCAAC--GAA---GGA........................................1911.0010100
........................................................................................................................................................................................................................................................................................................................ATTCGCAGAGAGTTCTGAGCGCAGC...............2511.0010100
.........................................................................................................................................................................................................................................................................................................................TTCGCAGAGAGTTCTGAGC....................1911.0011000
....................................................................................................................................................................................................................................................................................................A-CAGCAAC--GAA---GGAATTCGCA.................................2111.0010010
....................................................................................................................................................................................................................................................................................................A-CAGCAAC--GAA---GGAATTCGC..................................2011.0010010
.............................................................................................................................................................................................................................................................................................C-ATTGAA-CAGCAAC--GAA---GG.........................................1911.0010010
...................................................................................................................................................................................................................................................................................................AA-CAGCAAC--GAA---GGAATT.....................................1811.0010001
...................................................................................................................................................................................................................................................................................................................................GTTCTGAGCGCAGCAATA...........1811.0010001
..........................................................................................................................................................................................................................................................................................CTTC-ATTGAA-CAGCAAC--GAA---GGA........................................2311.0010010
.................................................................................................................................................................................................................................................................................................TGAA-CAGCAAC--GAA---GGAATT.....................................2011.0011000
...................................................................................................................................................................................................................................................................................................AA-CAGCAAC--GAA---GGAATTCGCAGAGAG............................2711.0010100
.............................................................................................................................................................................................................................................................................................C-ATTGAA-CAGCAAC--GAA---GGA........................................2011.0010100
...................................................................................................................................................................................................................................................................................................................................GTTCTGAGCGCAGCAATATCA........2111.0010010
...................................................................................................................................................................................................................................................................................................AA-CAGCAAC--GAA---GGAATTCG...................................2011.0010001
..................................................................................................................................................................................................................................................................................................GAA-CAGCAAC--GAA---GGAATTCG...................................2111.0010010
...............................................................................................................................................................................................................................................................................................ATTGAA-CAGCAAC--GAA---GGAATTCGCA.................................2611.0010001
dm3
AG-----CTGATAAATG----------TACGCAATGTTTAT--AATCAATTTCAAAGC----------TCGAAAGTATATAGAAAAC--------------------AA-----ATTCCAGTGTAA-----------------------AG------CTGCGTGACCGTTT-TACGCTCTATTCGGGTTGGTATTTTTCCCAATGCACTTTTCG-TACAT-------CCAGCTGGACCATTTTTTTGCACTCAGATCTCGGTCTTACC-----AATCCGATTCTTC-ATTGAA-CAGCTAC--GAA---GGAATTCGCAGAGAGTTCTGAGCGCAGCAATAGCAGCAAGAAGSizeHit CountTotal NormTotalGSM154618
Ovary
GSM154620
Ovary
GSM154621
Ovary
GSM154622
Ovary
GSM180328
Head
GSM180329
Mixed-body
GSM180330
Embryo
GSM180331
Embryo
GSM180332
Embryo
GSM180333
Embryo
GSM180334
Larvae
GSM180335
Disc
GSM180336
Pupae
GSM180337
S2
GSM231091
Ovary
GSM239041
Head
GSM239050
Head
GSM239051
S2
GSM239052
S2
GSM246084
Head
GSM266765
S2
GSM280082
Ovary
GSM280083
Ovary
GSM280084
Ovary
GSM280085
Testis
GSM280086
Ovary
GSM280087
S2-NP
GSM280088
S2-NP
GSM312995
Head
GSM313160
Head
GSM313161
Head
GSM313162
Head
GSM313163
Head
GSM313164
Head
GSM313165
Head
GSM343287
Embryo
GSM379050
Ovary
GSM379051
Ovary
GSM379052
Ovary
GSM379053
Ovary
GSM379054
Ovary
GSM379055
Ovary
GSM379056
Ovary
GSM379057
Ovary
GSM379058
Ovary
GSM379059
Ovary
GSM379060
Ovary
GSM379061
Ovary
GSM379062
Ovary
GSM379063
Ovary
GSM379064
Ovary
GSM379065
Ovary
GSM379066
Ovary
GSM379067
Ovary
GSM424739
S2
GSM424740
S2
GSM424741
S2
GSM467729
Female-body
GSM467730
Female-body
GSM467731
Female-body
M002
CS
M003
Male-body
M004
Male-body
M005
ML-DmD32
M006
ML-DmD32
M029
OSC
M030
OSC
M031
OSC
M032
S2-R+
M033
S2-R+
M034
S2-R+
M035
S2-R+
M036
S2-R+
M037
S2-R+
M038
S2-R+
M039
S2-R+
M048
S2-R+
OSS2
OSS
OSS6
OSS
OSS7
OSS
OSS8
OSS
S1
Head
S10
Embryo
S11
Embryo
S12
Embryo
S13
Embryo
S14
Embryo
S15
S2-GMR
S16
Kc
S17
Larvae
S18
Larvae
S19
Pupae
S2
Head
S20
Pupae
S21
Disc
S22
Head
S23
Female-body
S24
Male-body
S25
Larvae
S26
Larvae
S27
Pupae
S28
Pupae
S29
Head
S3
Male-body
S30
S2-GMR
S31
S2
S32
S2
S33
Kc
S34
Kc
S35
Kc
S4
Female-body
S5
Disc
S6
Embryo
S7
Embryo
S8
S2
S9
Embryo
SRR001337
Head
SRR001338
Head
SRR001339
Head
SRR001340
Head
SRR001341
Head
SRR001342
Head
SRR001343
Head
SRR001344
Head
SRR001345
Head
SRR001346
Head
SRR001347
Head
SRR001348
Head
SRR001349
Head
SRR001664
Head
SRR010951
Ovary
SRR010952
Ovary
SRR010953
Ovary
SRR010954
Ovary
SRR010955
Ovary
SRR010956
Ovary
SRR010957
Ovary
SRR010958
Ovary
SRR010959
Ovary
SRR010960
Ovary
SRR014268
Embryo
SRR014269
Embryo
SRR014270
Embryo
SRR014271
Embryo
SRR014272
Embryo
SRR014273
Ovary
SRR014274
Ovary
SRR014275
Ovary
SRR014276
Ovary
SRR014277
Ovary
SRR014278
Ovary
SRR014279
Ovary
SRR014280
Ovary
SRR014281
Ovary
SRR014282
Ovary
SRR023197
S2
SRR023399
S2
SRR023400
S2
SRR023402
S2
SRR023407
S2
SRR029028
S2
SRR029029
S2
SRR029030
S2
SRR029031
S2
SRR029032
S2
SRR029033
S2
SRR029608
Head
SRR029633
Head
SRR030145
gb3
SRR031692
Head
SRR031693
Head
SRR031694
Head
SRR031696
Head
SRR031697
Head
SRR031698
Head
SRR031699
Head
SRR031700
Head
SRR031701
Head
SRR031702
Head
SRR031703
Head
SRR031704
Head
SRR032092
S2
SRR032093
S2
SRR032094
S2
SRR032095
S2-NP
SRR032096
S2-NP
SRR032152
Head
SRR060643
Testis
SRR060644
Ovary
SRR060645
Testis
SRR060646
Ovary
SRR060647
Ovary
SRR060648
Ovary
SRR060649
Ovary
SRR060650
Testis
SRR060651
Ovary
SRR060652
Testis
SRR060653
Ovary
SRR065151
Ovary
SRR065152
Ovary
SRR065153
Ovary
SRR065154
Ovary
SRR065155
Ovary
SRR065800
Ovary
SRR065801
Ovary
SRR065802
Ovary
SRR065803
Ovary
SRR065804
Ovary
SRR065805
Ovary
SRR065806
Ovary
SRR065807
Ovary
SRR097865
S2-NP
SRR097866
S2-NP
SRR097867
S2-NP
SRR298536
Ovary
SRR298537
Ovary
SRR298711
Ovary
SRR298712
Ovary
SRR317110
Ovary
SRR317111
Ovary
SRR317112
Ovary
SRR317113
Ovary
SRR317114
Ovary
SRR317115
Ovary
SRR317116
Ovary
SRR317117
Ovary
SRR341115
S2
SRR341116
S2
SRR341117
S2
SRR341118
S2
SRR351332
Mixed-body
SRR351333
Mixed-body
T004
OSC
T005
CME-L1
V001
Embryo
V002
Embryo
V003
S2
V006
Female-body
V007
Head
V008
S2
V009
CME-L1
V010
ML-DmD20-C5
V011
Sg4
V012
Male-body
V013
Head
V014
DTT
V015
DreRFHV
V018
Kc167
V019
GM2
V020
S2-R+
V021
ML-DmD21
V022
ML-DmD32
V023
Head
V024
Kc167
V025
S2-R+
V026
1182-2H
V027
ML-DmD21
V028
CME-W1-Cl.8+
V029
ML-DmD9
V030
ML-DmD8
V031
GM2
V032
S1
V033
CME-W1-Cl.8+
V034
ML-DmD16-C3
V035
ML-DmD32
V036
ML-DmD20-C5
V037
S2
V038
S2
V063
Ovary
V0632
Ovary
V064
Ovary
V0642
Ovary
V065
Ovary
V0652
Ovary
V066
Ovary
V0662
Ovary
V067
S2-NP
V073
mbn2
V074
S3
V075
ML-DmBG1-C1
V076
ML-DmBG3-C2
V077
Head
V078
Head
V079
Head
V080
Head
V081
Embryo
V082
Embryo
V083
Male-body
V084
Female-body
V085
CME-W2
V086
Female-body
V088
Ovary
V0882
Ovary
V089
Ovary
V0892
Ovary
V090
Male-body
V091
fGS/OSS
V092
Male-body
V093
Male-body
V094
S2-R+
V095
S2-R+
V096
Ovary
V097
Ovary
V098
Ovary
V125
ML-DmD9
V126
CME-L1
V127
G2
V128
S3
V129
ML-DmBG1-C1
V130
ML-DmBG3-C2
V131
ML-DmD16-C3
V132
ML-DmD32
V133
Sg4
V134
ML-DmD8
V135
CME-W2
V136
Male-body
V137
Head
V138
Male-body
V139
Female-body
V140
Female-body
V141
Female-body
V142
Female-body
V144
OSC
V145
S2
V146
S1
V147
1182-2H
V148
mbn2
GSM1528798
follicle cells
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.................................................................................................................................................................................................................................................................................................TGAA-CAGCTAC--GAA---GGAATTCG...................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
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........................................................................................................................................................................................................................................................................................................................ATTCGCAGAGAGTTCTGAG.....................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................TTGAA-CAGCTAC--GAA---GGAATTCGCA.................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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................................................................................................................................................................................................................................................................................................TTGAA-CAGCTAC--GAA---GGAAT......................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
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........................................................................................................................................................................................................................................................................................................................ATTCGCAGAGAGTTCTGAGC....................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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............................................................................................................................................................................................................................................................................................TC-ATTGAA-CAGCTAC--GAA---GGA........................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................A-CAGCTAC--GAA---GGAATTCGCAGAGAG............................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110
...................................................................................................................................................................................................................................................................................................................................GTTCTGAGCGCAGCAATAGCA........2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
............................................................................................................................................................................................................................................................................................TC-ATTGAA-CAGCTAC--GAA---GGAATTCGCA.................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010
....................................................................................................................................................................................................................................................................................................................................TTCTGAGCGCAGCAATAGCA........2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000
............................................................................................................................................................................................................................................................................................................................GCAGAGAGTTCTGAGCGCAGCAATAGC.........2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.........................................................................................................................................................................................................................................................................................................CTAC--GAA---GGAATTCGCAGAG..............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
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...........................................................................................................................................................................................................................................................................................................AC--GAA---GGAATTCGCAGAGAGTT..........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................AGTTCTGAGCGCAGCAATAGCAG.......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................AGAGAGTTCTGAGCGCAG................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................CGCAGAGAGTTCTGAGCGCAGCAATA...........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................ATTGAA-CAGCTAC--GAA---GG.........................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................AGAGAGTTCTGAGCGCAGCAATAGCAGC......2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................CAGAGAGTTCTGAGCGCAGCAATAGCA........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
...................................................................................................................................................................................................................................................................................................................................GTTCTGAGCGCAGCAATA...........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................GCAGAGAGTTCTGAGCGCAGCAATAG..........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................GAATTCGCAGAGAGTTCTGAGCGCA.................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................CGCAGAGAGTTCTGAGCGCA.................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................GAGTTCTGAGCGCAGCAATAGCAGCA.....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..................................................................................................................................................................................................................................................................................................................................AGTTCTGAGCGCAGCAATAGCAGCA.....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................GAA-CAGCTAC--GAA---GGAAA......................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TTCTGAGCGCAGCAATAGCAGC......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TTCGCAGAGAGTTCTGAGCT...................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................TAC--GAA---GGAATTCGCAGAGAGTT..........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................AGTTCTGAGCGCAGCAATAGCAGCAAGAA.2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................AGCTAC--GAA---GGAATTCGCAGAGAGTT..........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...........................................................................................................................................................................................................................................................................................TTC-ATTGAA-CAGCTAC--GAA---GGAATT.....................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................................................................................................................................................................................ATTGAA-CAGCTAC--GAA---GGAATTC....................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
....................................................................................................................................................................................................................................................................................................................................TTCTGAGCGCAGCAATAGCAGCAAG...2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
..................................................................................................................................................................................................................................................................................................GAA-CAGCTAC--GAA---GGAATTCGCAGAGAG............................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TATATAGAAAAC--------------------AA-----ATTCCAGTGT....................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................AATCCGATTCTTC-ATTGAA-C.........................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................AGAGAGTTCTGAGCGCAGCAATAGCAG.......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................CGCAGAGAGTTCTGAGCGCAGATC.............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................CGCAGAGAGTTCTGAGCGAT.................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TTC-ATTGAA-CAGCTAC--GAA---GGAATTCG...................................2711.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................TC-ATTGAA-CAGCTAC--GAA---GGAATTCG...................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................................................................................A---GGAATTCGCAGAGAGTTC.........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................AGTTCTGAGCGCAGCAATAGCAGC......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................AGTTCTGAGCGCAGCAATAGC.........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................AATTCGCAGAGAGTTCTGAG.....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
...................................................................................................................................................................................................................................................................................................................................GTTCTGAGCGCAGCAATAGCAGCAAGATC2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................CAGCTAC--GAA---GGAATTCGCAGA...............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................TGAA-CAGCTAC--GAA---GGAATTCGCA.................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................TTC-ATTGAA-CAGCTAC--GAT---C..........................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GCAA-----G-------------TAATTATCAAATTTGCAG--TACCTAGTACCATGTTTACACAGAATCGAAGTTTTATAGAAACC--------------------AA-----TTTTCAGTGTAA-----------------------GG------GCGTGTGACCGTTT-TACGTTCGATACAGATTGGCATTTTTCCCGCTGCACGAG--------T-------GCAGTTGCCCCATTTTTTTGCACTCACATCTCGGTCTTACC-----AATCCAATACTTC-ATTGAA-CAGCGAC--CAA---GGAATTCACAGAGAGTTCTCAGCGCAGCTACAGCAGCCAGAAGSizeHit CountTotal NormTotalM055
Female-body
M057
Embryo
V060
Head
V040
Embryo
V107
Male-body
V108
Head
GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................A---GGAATTCACAGAGAGTT..........................1812.0020000020
............................................................................................................................................................................................................................................................................................................C--CAA---GGAATTCACAGAGAG............................1911.0010010000
..............................................................................................................................................................................................................................................................................................................................AGAGAGTTCTCAGCGCAGC...............1911.0010000010
.......................................................................................................................................................................................................................................................................................ATACTTC-ATTGAA-CAGCGAC--CAA---GGA........................................2611.0010001000
.......................................................................................................................................................................................................................................................................................ATACTTC-ATTGAA-CAGCGAC--CAA---GG.........................................2511.0010000010
................................................................................................................................................................................................................................................................................................................AA---GGAATTCACAGAGAGT...........................1811.0010000010
........................................................................................................................................................................................................................................................................................................................ATTCACAGAGAGTTCTCAGCG...................2111.0010000100
..................................................................................................................................................................................................................................................................................................GAA-CAGCGAC--CAA---GGAATTCACAGA...............................2511.0010000100
........................................................................................................................................................................................................................................................................................................GCGAC--CAA---GGAATTCACAGA...............................2011.0010000100
...........................................................................................................................................................................................................................................................................................................................CACAGAGAGTTCTCAGCGCAGCTACAGC.........2811.0010000100
............................................................................................................................................................................................................................................................................................................................ACAGAGAGTTCTCAGCGC..................1811.0010100000
........................................................................................................................................................................................................................................................................................................................ATTCACAGAGAGTTCTCAGCGCA.................2311.0010000100
droYak3
AT-----TTAA-------AAAAGTGATTACTGAATTTTCAG--TACCTATGACACGGCTTACACAG--------------AGAGATATATTTACTTTAAAAAACTAAAA-----GTTTCAGTGTAA-----------------------GG------TTGTGCGACCGTTT-TGCGTTCGATCCCGATTGGTATTTTTCCCGGTACATTTGCGG-TACAT-------GCAGCTGCCCCATTTTTTTGCACTCACATCTCGGTCCTACC-----AATCCAATTCTTC-ATTGAA-CAGCGAC--CAA---GGAATTCGCAGAGAGTTCTGAGCGCAGCAACAGCAGCAAGCAGSizeHit CountTotal NormTotalM026
Head
M043
Female-body
M056
Embryo
V046
Embryo
V052
Head
V058
Head
V120
Male-body
SRR1275488
Male larvae
SRR1275486
Male prepupae
SRR1275484
Male prepupae
GSM1528802
follicle cells
.......................................................................................................................................................................GTTT-TGCGTTCGATCCCGATTGGTAT..............................................................................................................................................................26111.0011000000000011
...............................................................................................................................................................................GTTCGATCCCGATTGGCT...............................................................................................................................................................1823.00633000000000
...........................................................................................................................................................................................................................................................................................................................CGCAGAGAGTTCTGAGCG...................1812.00201000100000
..............................................................................................................................................................................................................................................................................................................................AGAGAGTTCTGAGCGCAGC...............1911.00100000100000
..........................................................................................................................................................................................................................................................................................................GAC--CAA---GGAATTCGCAGAGAGTT..........................2311.00101000000000
...................................................................................................................................................................................................................................................................................................................................GTTCTGAGCGCAGCAACAGCAGCA.....2411.00100000010000
..........................................................................................................................................................................................................................................................................................CTTC-ATTGAA-CAGCGAC--CAA---GGA........................................2311.00100000010000
...............................................................................................................................................................................................................................................................................................ATTGAA-CAGCGAC--CAA---GGAATTC....................................2311.00110000000000
.......................................................................................................................................................................................................................................................................................................AGCGAC--CAA---GGAATTCGC..................................1811.00100100000000
..........................................................................................................................................................................................................................................................................................................................TCGCAGAGAGTTCTGAGCGCAGCAAC............2611.00101000000000
..........................................................................................................................................................................................................................................................................................................GAC--CAA---GGAATTCGCAGAGAGT...........................2211.00100000010000
...................................................................................................................................................................................................................................................................................................................................GTTCTGAGCGCAGCAACAGCA........2111.00100000010000
...........................................................................................................................................................................................................................................................................................................................CGCAGAGAGTTCTGAGCGCAGCAAC............2511.00100000010000
.........................................................................................................................................................................................................................................................................................................................TTCGCAGAGAGTTCTGAGC....................1911.00100001000000
............................................................................................................................................................................................................................................................................................................................GCAGAGAGTTCTGAGCGCAG................2011.00110000000000
..........................................................................................................................................................................................................................................................................................................GAC--CAA---GGAATTCGCAGAGA.............................2011.00100000010000
droEug1
AT-----TAGGCACAT-----------TACAAATTACATAT-------------------------------------------------------------------------TTTTCAGTGTAA-----------------------GG------TTGTGTTACCGTTTATATTTTTTATATGTTTTGGTAT------------ATTTGCGG-TGTATTGCCAAGTCAGTTGTTCCATTTTTTTGCACTCAAGTTTTGGTTCTACC-----A-----ATTCTCC-ATTGAA-CAGCGAC--CAG---GGAATTCGCACAGAGTTCTGAGCGCAACAGCAACAACAACAAGSizeHit CountTotal NormTotal
No Reads
droBia1
AA-----TTGCTCAAATGAAA-------AGTCAATTCTTTTTATGTCAATTAAAAACT-----------------TCTCTAGTAACC--------------------AATTTTAATTTCAGTGTAT-----------------------AG------TAGTGTGACCAGTT-TACTTTCCAATCAGATTGGTATTTTT--CGGTATATTTGCGG-TGTTTTGCCTTGTCAGTAGTCCCGTTTTTTTGCACTCGAATCTCGGTCCTACCTTACGAATCCAATTCTCC-ATTGAAATAGCGAC--CAG---GGAATTCTCACAGAGTTCCGAGCGCAGCAACAACATCCAGCACSizeHit CountTotal NormTotal
No Reads
droTak1
AAAA-----TA--AAAAGAAA-------------------------------------------------GAAGATTTA------CA--------------------AG-----TTTTCAGTGTAA-----------------------GG------TTGTGTGACCACAT-AACGTCATAGTCGAGTTGGTATTTT-CCCGGTATACG--CGG-TGTTTTGCCTAGTCAGCTGCACCGTTTTTTTGCACTCAAGTTTCGGCC-TACC-----AATCGAATTCTCC-ATTGAA-TTGCACAGCCAG---GGATTTTGCAGAGAGTTCCGAGCGCAACAACAACACCGAGCAGSizeHit CountTotal NormTotal
No Reads
droEle1
AA----------------------------------------------------------------------------------------------------------------ATGTCAGTGTAA-----------------------GGTACAATGTGTGTGACCGTAT-TTCATTCAATTCAGTTGGGTATTTT-CCGGGTATATTTAGCGGT-----------GTGACTG--TCATTTTTTTGCACTCAAGTCTCGGTCCTAC-----------AATTCTCC-ATT-AA-CAGTGAC--CAA---GGAATTCGCAGAGAGTTCCGACCGCAACAAC------AAGAAGSizeHit CountTotal NormTotal
No Reads
droRho1
A------------------------------------------------------------------------------------------------------------------TTTCAGTGTTA-----------------------AATAAAATTTGTGTGACCAA---------CGATTTTGTTCGGTATTTT-GCCGGTA----------------------------------TATTTTTGCACTCAAGTCTCGGTCCTACC-----A-----ATTCTCC-ATTGAA-CAGCAAC--CAA---GGAATTCGCACAGAGTTCCGAGCGAAACA--------------SizeHit CountTotal NormTotal
No Reads
droFic1
GCAACCATTGG-------AAA-----------AGTGTTTAT--TTTTTAG------------------TTGAGGATACAGAAATATCTATTTTTTGTATCAAACT---C-----TTATAAGTTTAATTTTTGTTAATTTTTTGTTGTTTGGAACCCTATATTTGACCCA---------TAAACAAGATAGGTAATAT-CTTAGTATATTTCACG---CAT-------TGAGTTGTTACATTTTTTTGCACTCAACTTTCGGTCTCACC-----A-----ATTGTCA-AACGAA-CAGCGAC--CAA---GGAATTCGCGCAGAGTTCCGACCGCTACAACAACAACGACAGCSizeHit CountTotal NormTotal
No Reads
droKik1
TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATTCTCC-AA-AAA-CAGCGAG--CAGAAAAGAATTTGCAAAGTGTTCTGAGCGCAGCAACAACAACGAGA--SizeHit CountTotal NormTotal
No Reads
droAna3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCAGGTCTCGGTCCCACT-----G-----GTTCCTCAATCGAA-CGGCAAC--CGA------------AGAAAGTTCTGAGTGCAACAAC------AAGAAASizeHit CountTotal NormTotalM044
Female-body
M058
Embryo
V039
Embryo
V055
Head
V105
Male-body
V106
Head
No Reads
droBip1
TT-----T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCCGGTATTTCCACTTG-------------------------------------TATTCTTCAGTCAGGTCTCGGTCCCACT-----G-----GTTCTTCAATCGAA-CGGCAAC--CAA---AG---------AAAGTTCTGAGTGCAACAACAACAA-----AASizeHit CountTotal NormTotal
No Reads
droGri2
AA-----TTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTAATAGSizeHit CountTotal NormTotalM041
Female-body
V109
Male-body
No Reads

Generated: 05/19/2015 at 12:28 AM