ID:

dsi_4355

 Coordinate:

2r:5867836-5867985 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-31.1

Flybase annnotation

exon [2r_5867986_5868024_-]; five_prime_UTR [2r_5867986_5868024_-]; intron [2r_5867677_5867985_-]

No Repeatable elements found

Sense Strand Reads

-----------#######################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGGAATAGTAGACAATATAACAAGTGGGCAAAATGTGTTAGATGTTTAAGGTAAGCCACCGCCAGTGCTGCAGCTCGGCGGAGCCGTATCCAACGGTCTGCGCTCTGGGGGCCGCAGCATTCCGCACTCGTCACGTTTACTCCCCTTTTCTGGTCTTTGTTGGGGCTCCGCTGGCACTTCTGCTGATAAGTGCCCAAGTCGACTTAATTAATCAGTGCCCCGGAGTCGGGGGCAAGTCAATTGGATATTT
***************************************************************((((((((.((((((((.((((((.....)))).)).))))....)))).))))))))..******************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 SRR902009
testis
 M023
head
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
.......................................................................................................TCTGGGGGCCGCAGCATTCC............................................................................................................................... 20 0 1 2.00 2 1 0 0 1 0 0 0 0 0
...............................................................AGTGCTGCAGCTCGGCGGAGC...................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....ATAGTAGACAATATAACAAGTGGGC............................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................TCTAGGGGCCGCAGCATTCCGT............................................................................................................................. 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................................................AACGGTCTGCGCTCTGGGGG........................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.......................GTGGGCAAAATGTGTTAG................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.......................................................................................................TCTGGGGGCCGCAGCATTCCGC............................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................................................................................TGGGGGCCGCAGCATTCCGCA............................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..GAATAGTAGACAATATAACAAGTGGGC............................................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................CGATGTTGACGGTAAGCCAC............................................................................................................................................................................................... 20 3 6 0.33 2 0 0 0 2 0 0 0 0 0
...............................................................................................................................................................TTAGGACTCCGCTGGCACCT....................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 1 0 0
......................................................................................................................ATTCCGGACTCGTCACC................................................................................................................... 17 2 8 0.13 1 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................TTTGTTGGGGCTGCGC............................................................................... 16 1 16 0.13 2 0 0 0 0 2 0 0 0 0
................................................................................................................................................................TAGGACTCCGCTGGCACCT....................................................................... 19 3 20 0.10 2 0 0 0 0 0 0 0 2 0
...............................................................................................................................................................TTAGGACTCCGCTGGCA.......................................................................... 17 2 17 0.06 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TCCTTATCATCTGTTATATTGTTCACCCGTTTTACACAATCTACAAATTCCATTCGGTGGCGGTCACGACGTCGAGCCGCCTCGGCATAGGTTGCCAGACGCGAGACCCCCGGCGTCGTAAGGCGTGAGCAGTGCAAATGAGGGGAAAAGACCAGAAACAACCCCGAGGCGACCGTGAAGACGACTATTCACGGGTTCAGCTGAATTAATTAGTCACGGGGCCTCAGCCCCCGTTCAGTTAACCTATAAA
*******************************************************************************************************************************((((((((.((((((((.((((((.....)))).)).))))....)))).))))))))..*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 M024
male body		 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
..................................................................................................................................................................................................GTTCAGCTGAATTAATT....................................... 17 0 2 0.50 1 1 0 0 0 0 0
........................................................................................................................................................CTTAAACAAACCCGAGGCGAC............................................................................. 21 3 7 0.29 2 0 2 0 0 0 0
...................................................................................................................TCATAAGGCGTTAGCAGT..................................................................................................................... 18 2 5 0.20 1 0 0 1 0 0 0
...........................................................................................................................................GAGGGAAAAAGAACAGCAACAA......................................................................................... 22 3 6 0.17 1 0 0 0 1 0 0
...................................................................................................................................GGGCAAATGAGGGGA........................................................................................................ 15 1 7 0.14 1 1 0 0 0 0 0
..................................................................................................................................................................................................GTTCAGCTGAATCAA......................................... 15 1 11 0.09 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................GGCTTCAGCCCCCGTCC.............. 17 2 18 0.06 1 0 0 0 0 1 0
......................................................................................ATTGGTTGGCAGACGC.................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1

Generated: 04/24/2015 at 01:38 AM