ID:

dsi_4354

 Coordinate:

3r:293790-293939 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.3 -24.2 -24.2

Flybase annnotation

three_prime_UTR [3r_293869_293922_-]; CDS [3r_293923_295530_-]; exon [3r_293869_295530_-]

Repeatable elements

NameClassFamilyStrand
DNAREP1_DYakRCHelitron-
AT_richLow_complexityLow_complexity+

Sense Strand Reads

#########################################################################################################################---------------------------------------------------------------------------------------------------------------------------------
GATTGACACGGCCCAAAAGCCACAGAAATCCGCCTTTCGAAATTGCCGCTGTAAATTCTATTAGTTTTTGTTTTGATGGTATTGTTTTACAAGCAACTTAAAATAAATTATAATTCAGTTAAATAAATATATTTTACCGCTCGATTTTAATACCCGTTACTCATAGGTTAAAAGGGTATACTAGATCGTCGAAAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTCTTG
**************************************************...((((..((((...((((((((((.....((((...)))).....))))))))))...))))..)))).......((((((((..((..((((((..((((((...(((....))).....))))))...)))))).)).))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 O001
Testis
 M053
female body
 M025
embryo
 GSM343915
embryo
 O002
Head
...............................................................................................................................................................................................AAAAGTATGTAACAGGTAGAAGGA................................... 24 0 20 14.50 290 158 38 32 3 40 10 9 0 0 0 0 0
....................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCGTT............................. 25 0 20 14.05 281 147 35 29 65 0 0 0 0 5 0 0 0
...............................................................................................................................................................................................AAAAGTATGTAACAGGTAGAAGGAA.................................. 25 0 18 11.61 209 125 34 27 3 13 6 1 0 0 0 0 0
....................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCGT.............................. 24 0 20 10.90 218 124 26 0 35 5 20 0 0 1 6 1 0
...............................................................................................................................................................................................AAAAGTATGTAACAGGTAGAAGGAAG................................. 26 0 16 7.63 122 106 3 5 1 2 1 4 0 0 0 0 0
...............................................................................................................................................................................................AAAAGTATGTAACAGGTAGAAGGAAGC................................ 27 0 16 4.56 73 62 1 0 0 0 4 4 0 2 0 0 0
...............................................................................................................................................................................................AAAAGTATGTAACAGGTAGAAGG.................................... 23 0 20 2.85 57 36 13 0 1 3 2 1 0 0 0 1 0
....................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCG............................... 23 0 20 2.75 55 19 2 2 6 0 6 0 20 0 0 0 0
...............................................................................................................................................................................................AAAAGTATGTAACAGGTAGAAGGAAGCG............................... 28 0 14 1.14 16 14 0 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................AAAAGTATGTAACAGGTAGAAGGAAT................................. 26 1 20 1.10 22 16 2 0 0 1 0 3 0 0 0 0 0
...............................................................................................................................................................................GTATACTAGATCGTCGAAAAA...................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................GGGTATACTAGATCGTCGAAAAGT..................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................GGTATACTAGATCGTCGAAAAGTA.................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................GGTATACTAGATCGTCGAAAAGTTT................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................AAAAGGGTATACTAGATCGTCGAAA........................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AAAAGTATGTAACAGGTAGAAGGT................................... 24 1 20 1.00 20 18 0 0 1 0 0 1 0 0 0 0 0
........................................................................................................................................................................................ATCGTCGAAAAGTATGTAACAGGTAGA....................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................GTATACTAGATCGTCGAAAAG...................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................TCGTCGAAAAGTATGTAAC.............................................. 19 0 3 1.00 3 0 0 0 0 0 0 0 3 0 0 0 0
............................................................................................................................................................................AGGGTATACTAGATCGTCGAAAAGT..................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................TAAAAGGGTATACTAGATCGTCGAAAAG...................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................GGGTATACTAGATCGTCGAAAAGTATG.................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TGTAACAGGTAGAAGGAAGCGTT............................. 23 0 20 0.70 14 11 0 0 3 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AAAAGTATGTAACAGGTAGAAG..................................... 22 0 20 0.60 12 8 0 1 0 0 3 0 0 0 0 0 0
....................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGC................................ 22 0 20 0.55 11 0 0 0 0 0 10 1 0 0 0 0 0
...............................................................................................................................................................................................AAAAGTATGTAACAGGTAGAAGGAAGT................................ 27 1 20 0.55 11 4 0 0 0 0 0 7 0 0 0 0 0
......................................................................................................................................................................................................TGTAACAGGTAGAAGGAAGCGTTT............................ 24 0 20 0.50 10 7 0 1 0 0 0 2 0 0 0 0 0
.............................................................................................................................................................................GGGTATACTAGATCTTTGAAAAG...................................................... 23 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AAAAGTATGTAACAGGTAGAAGGTA.................................. 25 1 20 0.50 10 8 0 0 0 0 0 2 0 0 0 0 0
......................................................................................................................................................................................................TGTAACAGGTAGAAGGAAGCGTTTC........................... 25 0 18 0.39 7 5 0 0 0 0 1 1 0 0 0 0 0
....................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCGTTTC........................... 27 0 18 0.39 7 3 2 0 0 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................AAAAGTATGTAACAGGTAGAAGGAAGCGT.............................. 29 0 14 0.36 5 1 0 1 0 0 0 3 0 0 0 0 0
....................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCGTTT............................ 26 0 20 0.35 7 0 2 0 2 0 0 1 0 2 0 0 0
...............................................................................................................................................................................................AAAAGTATGTAACAGGTAGAAGGAAGCGTT............................. 30 0 14 0.29 4 0 1 1 0 2 0 0 0 0 0 0 0
..............................................................................................................................................................................................GAAAAGTATGTAACAGGTAGAAGGA................................... 25 0 16 0.25 4 4 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GGTAGAAGGAAGCGTT............................. 16 0 20 0.25 5 0 0 0 0 0 5 0 0 0 0 0 0
..................................................GTCGACTCTATTAGTTTTTGT................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................AAAAGTATGTAACAGGTAGAAGGAAGA................................ 27 1 20 0.20 4 2 0 0 0 0 0 2 0 0 0 0 0
....................................................................................................................................................................................................TATGTAACAGGTAGAAGGA................................... 19 0 20 0.20 4 0 0 0 0 0 4 0 0 0 0 0 0
......................................................................................................................................................................................................TGTAACAGGTAGAAGGAAGCGTTTCC.......................... 26 0 16 0.19 3 2 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................AAAGTATGTAACAGGTAGAAGGAAGC................................ 26 0 19 0.16 3 3 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TAACAGGTAGAAGGAAGCGTTTCCG......................... 25 0 13 0.15 2 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GTATGTAACAGGTAGAAGGAAGCGTT............................. 26 0 20 0.15 3 2 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................TAACAGGTAGAAGGAAGCGTTTC........................... 23 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................GAAAAGTATGTAACAGGTAGAAGGAA.................................. 26 0 15 0.13 2 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TAACAGGTAGAAGGAAGCGTTTCC.......................... 24 0 18 0.11 2 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................GTATGTAACAGGTAGAAGGAAGCGT.............................. 25 0 20 0.10 2 0 0 0 0 0 2 0 0 0 0 0 0
.....................................................................................................................................................................................................ATGTAACAGGTAGAAGGAAGCGTT............................. 24 0 20 0.10 2 0 0 0 0 0 1 0 0 1 0 0 0
...............................................................................................................................................................................................ATAAGTATGTGACAGGTAGAAGGAA.................................. 25 2 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCGA.............................. 24 1 20 0.10 2 1 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAG................................. 21 0 20 0.10 2 0 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................AAAAGTATGTAACAGGTAGAAGT.................................... 23 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................AAAGTATGTAACAGGTAGAAG..................................... 21 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TAACAGGTAGAAGGAAGCGTTTCCGA........................ 26 0 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AGGTAGAAGGAAGCGTTTCCGACCATA................... 27 0 12 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................GGTAGAAGGAAGCGTTTCCGAC....................... 22 0 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................TAACAGGTAGAAGGAAGCGTTTCCGT........................ 26 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................GAAAAGTATGTAACAGGTAGAAGG.................................... 24 0 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AAAAGTATGGAACAGGTAGAAGGAAGC................................ 27 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................AATGGCCGCAGTAAATTTTA.............................................................................................................................................................................................. 20 3 17 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................GCTCATAGGATAAAAGG........................................................................... 17 2 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ATGTAACAGGTAGAAGGAAGCGTTTC........................... 26 0 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................AAAAGTATGTAACAGGTAGAAGGAAGTG............................... 28 1 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCGAT............................. 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GTAGAAGGAAGCGTTTCCGACC...................... 22 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................AAAAGTATGTAACAGGTAGAAGGAG.................................. 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AAAAGTATGTAACAGGT.......................................... 17 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................TAACAGGTAGAAGGAAGCGTTA............................ 22 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AATATGTAACAGGTAGAAGGAAGCG............................... 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCGCAT............................ 26 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TATGTAACAGGTAGAATGAAGCGTA............................. 25 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AACAGGTAGAAGGAAGCGTTTCC.......................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................AAGTATGTAACAGGTAGAAGGAA.................................. 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AATATGTAACAGGTAGAAGGAAGCGTT............................. 27 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AACAGGTAGAAGGAAGC................................ 17 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................AAAGTATGTAACAGGTAGAAGGA................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCGTTCC........................... 27 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................TAACAGGTAGAAGGAAGCGTT............................. 21 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................AAAAGTATGTAACAGGTAGAA...................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TAAAGTATGTAACAGGTAGAAGGA................................... 24 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AACAGGTAGAAGGAAGCGTT............................. 20 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................AATGCCGCTGTAAAT.................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AAAAGTATGCAACAGGTAGAAGGAA.................................. 25 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................AAAAGTATGTAACAGGTAGAAGGC................................... 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TAACAGGTAGAAGGAAGCGTTT............................ 22 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................AAAAGGATGTAACAGGTAGAAGGAA.................................. 25 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................TATTTAACCGCTCGATTA....................................................................................................... 18 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCGTC............................. 25 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................CTCATAGGATAAAAGGT.......................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TGTAACAGGTAGAAGGAAGCGTTTCA.......................... 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AGTATGTAACAGGTAGAAGGAAGC................................ 24 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................AGTATGTAACAGGTAGAAGGAAGCGTT............................. 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AGTATGTAACAGGTAGAAGGAAGCGT.............................. 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AAAACTATGTAACAGGTAGAAGGAAGC................................ 27 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................TATGTAACAGGTAGAATGAAGCGTT............................. 25 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGTGTT............................. 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GTAACAGGTAGAAGGAAGCGTTT............................ 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AAGAGGTAGAAGGAAGCGTTT............................ 21 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................AGCGTTTCCGACCATATAAAGTATATA........ 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AAAAGAATGTAACAGGTAGAAGG.................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TGTAACAGGTAGAAGGAAGCGTTA............................ 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TTCGTCGAAAAGTATGTAACAGGTA......................................... 25 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TGTGTAACAGGTAGAAGGAAGCGTT............................. 25 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................AAAAGTATGTAACAGGTATAAGGA................................... 24 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................TCGTGGAAAAGTATGTTACAGGTA......................................... 24 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AAAAGTATGTAACAGGTAGAAGTAA.................................. 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GTATGTAACAGGTAGTAGGAAGC................................ 23 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................TATGTAACAGGTAGAAGTAAGCGT.............................. 24 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCGTAT............................ 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TGTAACAGGTAGAAGGAAGTGT.............................. 22 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTAACTGTGCCGGGTTTTCGGTGTCTTTAGGCGGAAAGCTTTAACGGCGACATTTAAGATAATCAAAAACAAAACTACCATAACAAAATGTTCGTTGAATTTTATTTAATATTAAGTCAATTTATTTATATAAAATGGCGAGCTAAAATTATGGGCAATGAGTATCCAATTTTCCCATATGATCTAGCAGCTTTTCATACATTGTCCATCTTCCTTCGCAAAGGCTGGTATATTTCATATATATAAGAAC
**************************************************...((((..((((...((((((((((.....((((...)))).....))))))))))...))))..)))).......((((((((..((..((((((..((((((...(((....))).....))))))...)))))).)).))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 M024
male body		 M025
embryo
 GSM343915
embryo
.............................................................................................................................................................................................................................AGGCTGGTATATTTCATATATATAAG... 26 0 20 9.10 182 0 118 0 0 0 64 0 0 0 0 0
.............................................................................................................................................................................................................................AGGCTGGTATATTTCATATATATA..... 24 0 20 6.75 135 0 72 0 11 1 0 51 0 0 0 0
............................................................................................................................................................................................................................AAGGCTGGTATATTTCATATATATA..... 25 0 20 3.65 73 0 63 7 2 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................AAAGGCTGGTATATTTCATATATATA..... 26 0 20 3.50 70 3 42 2 2 0 21 0 0 0 0 0
............................................................................................................................................................................................................................AAGGCTGGTATATTTCATATATATAAG... 27 0 20 3.15 63 0 36 1 2 0 18 6 0 0 0 0
......................................................................................................................................ATGGCGAGCTAAAATTATGGGCAATGAGT....................................................................................... 29 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
............................AGGCGGAAAGCTTTAACGGCGACATTT................................................................................................................................................................................................... 27 0 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0
.....................................................................................................................CAATTTATTTATATAAAATGGCGAGCT.......................................................................................................... 27 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................ATTTTCCCATATGATCTAGCAGCTTT........................................................ 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TCGCAAAGGCTGGTATATTTCAT............ 23 0 20 2.00 40 10 3 21 6 0 0 0 0 0 0 0
.........................................................................................................................................................................TTTTCCCATATGATCTAGCAGCTTT........................................................ 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TGATCTAGCAGCTTTTCATACA................................................. 22 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0
...........................TAGGCGGAAAGCTTTAACGGCGACAT..................................................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AGCAGCTTTTCATACATTGTCCAT......................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................GGCGGAAAGCTTTAACGGCGACATTT................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..............................GCGGAAAGCTTTAACGGCGACAT..................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................ATTAAAAGGCGAGCTAAAATCAT.................................................................................................. 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................ACAAAATGTTCGTTGAATTTTATT................................................................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................TATTTATATAAAATGGCGAGCTAA........................................................................................................ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..................CGGTGTCTTTAGGCGGAAAGCTTTAA.............................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATGATCTAGCAGCTTTTCATACAT................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................GAGCTAAAATTATGGGCAATGAG........................................................................................ 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................ATAACAAAATGTTCGTTGAATTTTAT................................................................................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................AGCTAAAATTATGGGCAATGAGTAT..................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TGATCTAGCAGCTTTTCATACATTGT............................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................GAGCTAAAATTATGGGCAATGAGTAT..................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................CGGCGACATTTAAGATAATCAAAAA..................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................AAAACTACCATAACAAAATGTTCGTT.......................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................AGCTAAAATTATGGGCAATGAGTATCT................................................................................... 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.............................................GGCGACATTTAAGATAATCAA........................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...............................CGGAAAGCTTTAACGGCGACATTTAAGAT.............................................................................................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GGCGAGCTAAAATTATGGGCAATGAGT....................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................TAAAATGGCGAGCTAAAATTATGGG............................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...............................................CGACATTTAAGATAATCAAAAACAAAA................................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................GTGTCTTTGGGCGGAAAGCTTTAA.............................................................................................................................................................................................................. 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............TTTCGGTGTCTTTAGGCGGAAAGCTT................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GGCTGGTATATTTCATATATATAAG... 25 0 20 0.95 19 0 11 0 3 3 0 2 0 0 0 0
.................................................................................................................................................................................................................CTTCCTTCGCAAAGGCTGGTAT................... 22 0 20 0.95 19 0 0 0 0 19 0 0 0 0 0 0
.......................................................................................................................................................................................................................TCGCAAAGGCTGGTATATTTCATAT.......... 25 0 20 0.75 15 9 0 0 1 1 0 4 0 0 0 0
..................................................................................................................................................................................................................TTCCTTCGCAAAGGCTGGTAT................... 21 0 20 0.65 13 0 0 0 0 13 0 0 0 0 0 0
..................................................................................................................................................................................................TCATACATTGTCCATCTTCCT................................... 21 0 20 0.65 13 11 0 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CTTCCTTCGCAAAGGCTGGTATATT................ 25 0 20 0.60 12 2 0 0 0 8 0 2 0 0 0 0
.....................TGTCTTTAGGGGGAA...................................................................................................................................................................................................................... 15 1 9 0.56 5 0 0 0 0 5 0 0 0 0 0 0
......................................................................................................................................................................................................................TTCGCAAAGGCTGGTATATTTCAT............ 24 0 20 0.55 11 4 0 4 2 1 0 0 0 0 0 0
............................................................................................................................................................................................................................AAGGCTGGTATATTTCATATATATAGG... 27 1 20 0.55 11 0 11 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CGCAAAGGCTGGTATATTTCATATA......... 25 0 20 0.50 10 0 1 0 1 1 1 4 2 0 0 0
..........................................................................................................................................................................................................................CAAAGGCTGGTATATTTCATATATATA..... 27 0 20 0.50 10 0 6 0 0 0 4 0 0 0 0 0
.......................................................................................................................................................................................................................TCGCAAAGGCTGGTATATTTCATATAT........ 27 0 20 0.50 10 1 0 6 0 0 0 3 0 0 0 0
.....................................................................................................................................................................................................................CTTCGCAAAGGCTGGTATATTTCAT............ 25 0 20 0.50 10 6 0 0 0 0 0 4 0 0 0 0
...........................................................................................................................................................................................CAGCTTTTCATACATTGTCCATCTT...................................... 25 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AAAGGCTGGTATATTTCATATATATAAG... 28 0 20 0.45 9 0 6 0 3 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CGCAAAGGCTGGTATATTTCAT............ 22 0 20 0.40 8 2 0 2 1 0 0 3 0 0 0 0
.................................................................................................................................................................................................................CTTCCTTCGCAAAGGCTGGTATATTT............... 26 0 20 0.35 7 0 0 1 0 3 0 2 0 0 0 1
............................................................................................................................................................................................................................AAGGCTGGTATATTTCATATATAT...... 24 0 20 0.35 7 0 3 0 0 0 4 0 0 0 0 0
.......................................................................................................................................................................................................................TCGCAAAGGCTGGTATATTTCATATA......... 26 0 20 0.35 7 0 2 4 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................GCAAAGGCTGGTATATTTCATATA......... 24 0 20 0.30 6 6 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TTCCTTCGCAAAGGCTGGTATAT................. 23 0 20 0.30 6 0 0 0 0 6 0 0 0 0 0 0
........................................................................................................................................................................................................................CGCAAAGGCTGGTATATTTCATATATATA..... 29 0 20 0.25 5 0 0 3 0 0 0 2 0 0 0 0
..................................................................................................................................................................................................TCATACATTGTCCATCTTCCTT.................................. 22 0 20 0.25 5 1 0 0 4 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CCTTCGCAAAGGCTGGTATATTTCAT............ 26 0 20 0.25 5 0 0 1 0 0 0 3 1 0 0 0
.............................................................................................................................................................................................................................AGGCTGGTATATTTCATATATATAG.... 25 1 20 0.25 5 0 3 0 0 0 2 0 0 0 0 0
..............................................................................................................................................................................................................................GGCTGGTATATTTCATATATATA..... 23 0 20 0.20 4 0 3 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................ACATTGTCCATCTTCCTTCGCAAAGGC......................... 27 0 11 0.18 2 0 0 0 1 0 0 1 0 0 0 0
......................................................................................................................................................................................................................TTCGCAAAGGCTGGTATATTTCATAT.......... 26 0 20 0.15 3 0 0 3 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CGCAAAGGCTGGTATATTTCATATAT........ 26 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TCGCAAAGGCTGGTTTATTTCATATAT........ 27 1 20 0.15 3 0 0 3 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GGCTGGTATATTTCATATATATAGG... 25 1 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AAGGCTGGTATATTTCATATATATAG.... 26 1 20 0.15 3 0 2 0 0 0 1 0 0 0 0 0
................................................................AAAAACAAAACTACCAGGACAAC................................................................................................................................................................... 23 3 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................CATCTTCCTTCGCAAAGGCTGGTAT................... 25 0 17 0.12 2 0 0 0 0 2 0 0 0 0 0 0
.......................................................................................................................................................................................................................TCGCAAAGGCTGGTATATTT............... 20 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ATACATTGTCCATCTTCCTTCGCAAAGGCT........................ 30 0 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATGATCTAGCAGCCTG........................................................ 16 2 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CGCAAAGGCTGGTATATTTCATATATA....... 27 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CGCAAAGGCTGGTTTATTTCATATATAG...... 28 2 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CGCAAAGGCTGGTATAT................. 17 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0
.......................................................................................................................................................................................................................TCGCAAAGGCTGGTATATTTCATATATAT...... 29 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CGCAAAGGCTGGTATATTTC.............. 20 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0
............................................................................................................................................................................................................................CAGGCTGGTATATTTCATATATATA..... 25 1 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0
.........................................................................................................................................................................................................................GCAAAGGCTGGTATATTTCATATAT........ 25 0 20 0.10 2 0 0 0 0 0 2 0 0 0 0 0
...........................................................................................................................................................................................................................AAAGGCTGGTATATTTCATATATA....... 24 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0
................................................................................................................................................................................................................TCTTCCTTCGCAAAGGCTGGTATATTT............... 27 0 20 0.10 2 0 0 0 0 0 0 1 1 0 0 0
........................................................................................................................................................................................................ATTGTCCATCTTCCTTCGCAAAGGCT........................ 26 0 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TTGTCCATCTTCCTTCGCAAAGGCT........................ 25 0 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGTCCATCTTCCTTCGCAAAGGCT........................ 24 0 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0
.......TGCCGGGGTTTCGGTGCCC................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................CAGGCTGGTATATTTCATATATATAGG... 27 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AGGCTGGTATATTTCATATATATAAGA.. 27 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................AGGCTGGTATATTTCA............. 16 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................CGCAAAGGCTGGTACATTTCATATA......... 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TCGCAAAGGCTGGTATATATCATAT.......... 25 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................AAAGGCTGCTATATTTCATATATATAG.... 27 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TTCGCAAAGGCTGGTATATATCAT............ 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CTTCGCAAAGGCTGGTTTATTTCATAT.......... 27 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACGCAAAGGCTGGTATATTTCATATATAT...... 29 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TCGCAAAGGCTGGTATATTTC.............. 21 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................CGCAAAGGCTGGTATATTTCATAT.......... 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CCTTCGCAAAGGCTGGTATATATCAT............ 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AAGGCTGGTATATTACATATATATA..... 25 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................AGGCTGGTATATTTCATATAT........ 21 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................AAAGGCTGGTATATTTCAT............ 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TCGCAAAGGCTGGTATAT................. 18 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................CCTTCGCAAAGGCTGGT..................... 17 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................GCAAAGGCTGGTATATTTCATATATAT...... 27 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AAAGGCTGGTATATTTCATATA......... 22 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AAGGCTGGTATATGTCATATATATAAG... 27 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................TTCCTTCGCAAAGGCTGGTATATTTCAT............ 28 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CACAGGCTGGTATATTTCATATATATA..... 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TCGCAAAGGCTGGTATATTTCA............. 22 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................CTTCCTTCGCAAAGGCTGGTATATTTCAT............ 29 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................AGGCTGGTATATTTCATATATATAA.... 25 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CTTCGCAAAGGCTGGTATATTTCATAT.......... 27 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AAGGCTGGTATATTT............... 15 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................GGTATATTTCATATATATAAG... 21 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................TCCTTCGCAAAGGCTGGTATATTTCAT............ 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GCAAAGGCTGGTATATTTCATAT.......... 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TCCTTCGCAAAGGCTGGTATA.................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................................AGGCTGGTATATTTCATATA......... 20 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................GCAAAGGCTGGTATATTTCATATATATAAG... 30 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................CTTCGCAAAGGCTGGTTTATTTCAT............ 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TTCGCAAAGGCTGGTATATTTCATATAT........ 28 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................TTCGCAAAGGCTGGTATATTTCATATA......... 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TGGTATATTTCATATATATAAG... 22 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................AAAATGGCAAGCTAAAGATA................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
...................CGTGTCTTTAGGGGGAA...................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:293740-293989 - dsi_4354 GATT--GACAC-------GGCCCAAAAGCCA----CAGAAATCC----------------------------------------------------------------------------------------------GCC--------------------TTTCGAAATTGCCGCT------GT-AAAT-------TCTATTA----------G--------------------------------------------------------------------------------------------------------TTTTTGTT---------TTG---------------------------------ATGGTATTGTTTTACAAGCAA----------------CTTAAAATA-----------AATTATAATTCAG--------------------TTAAATAAATATATTTT----------------------ACC-----G----------CT-------CG---------ATTTTAATACCCGTTACTCATA----------------------------------------------------GGTT-AAAAGGGTATACTAGAT-CGTCGA-------AAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCATATAAAGTATAT----ATATTCTTG
droSec2 scaffold_6:437163-437405 - GATT--GACAC-------GGCCCAAAAGCCA----CAGAAATCC----------------------------------------------------------------------------------------------GCC--------------------TTTCGAAATTGCCGCT------GT-AAAT-------TCTATTA----------G--------------------------------------------------------------------------------------------------------TTTTTGTT---------TTG---------------------------------ATGGTATTGTTTTACAAGCAA----------------CTTAAAATA-----------AATTATAATTCAG--------------------TTAAATAAATATATTTT----------------------ACC-----G----------CT-------CG---------ATTATAATACCCGTTACTCATA----------------------------------------------------GGTT-AAAAGGGTATACTAGAT-CGTCGA-------AAAGTATGTAAAAGGTAGAAGGAAGCGTTTCAGACCATATAAAGTATAT----GT-------
dm3 chr3R:330213-330444 - GATC--GACCC-------GGCCCAAA----------AGAAATCC----------------------------------------------------------------------------------------------GCC--------------------TTTCGAAATTGCCGCT------GT-AAAT-------TCTATTA----------G--------------------------------------------------------------------------------------------------------TTTT---T---------TGG---------------------------------ATGGCATTGTTTTACAAGCAA----------------CTTGAAATA-----------AATTATAATTCAG--------------------TTAAATAAACATATGTT----------------------ACA-----G----------CT-------CG---------ATTTTAA-AACAGAGCTATATA----------------------------------------------------GAGTATACAGAGTATGCTAGAT-TGTTGA-------AAAGTATGTAACACGTAGAAGGAAGCGTTTCCGTCCA---------TAT----ATATTCTTG
droEre2 scaffold_4770:309294-309521 + CC--CAA--------TA----------GCGA----TATAAATCT-----TT----------------------------------------------TAACTA--------TGTTGT-TATAGCTACAATAGTT----TC----------------TTTTCC----------------------------------------------------------------------------------------------------------------------------------------------------------TTT------------------GG---------------------------------A-------------------------------------------------------------------------------------------------------------------------------------TTTT----------GT-------CT---------ATTTTTATACTCGTTACTCGTA----AAGTAAAAGCAAAGACATTCAAATTAGAATTACATATTCTAATGTCTATGGT-GAAAGGGTATACTAGATTCGTTGA-------AAAGTATGCAACAGGCAGAAGGAAACGTTTCCGACCACATAAAGTATAT----GTATTCTTG
droYak3 v2_chrUn_1307:394-639 + TATT--GTCTA-------GGCCAGAAATATA----TAGCAGCCC----------------------------------------------------------------------------------------------TCG--------------------TATTTAAA-TGCTGCA------AT-CTAT-------TCAATTA----------C--------------------------------AT-------------TCTTATATTACAATAATC------------------------------------------------------------------GACCCTA----------------------------------------------------------TAAAATA-----------TAATAAA----------------------------AAATACATATAAA-A----------------------ACC-----G--TTTCTGATCA---TCTGTT---------ATTTTTATACCCGTTACTCGTA----------------------------------------------------GAGT-AAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTAACAGGCAGAAGGAAGGGTTTCCGACCATATAAAGTATAT----ATATTCTTG
droEug1 scf7180000409657:3088-3296 - AA--AAAG---------------------TA----TGGAAGGCA----------------------------------------------------------------------------------------------GCT--------------------TTTCC-----GACCCT------AT-AAAT-------TATATA--------------------------------------------------------------------------------------------------------------------T-----TT---------TTGA--------------------------------TCAGG--------ATCAATAG-------------------------------------------------CCAAGTCGCAACAT-------TTAATAAGT----GT--------------------CAAATG-----AGG--------GT-------TT---------ATTTTTATACCCGTTACTCGTA----------------------------------------------------GAGT-AAAAGGGTATATTAGATTCGTTGA-------AAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATAT----ATATTCTTG
droBia1 scf7180000302377:254698-254964 + TATT--TATAC-------GATCCTTGAGGCG----ACGAACTCT----------------------------------------------------------------------------------------------TCT--------------------TGCAAAAAATTATTAT------TT-AATT-------TTTGTTC----------G--------------------------------------------------------------------------------------------------------TTTT---T---------CAT---------------------------------AT------ATTTTATTAGGATCTTATCACTAGTGGAGCT------TTGGTTACAATAAGAAAATCCACAT--------------------GTAAATAAATAAAGGGA----------------------ATG-----G----------AA-------GT---------GTTTTTATACCCGTTACTCGTA----------------------------------------------------GAGT-AAAAGGGTATACTAGATTTAGCGG-------GTAGTATATAACAGGTAGAAGGAAGCGCTTCCGACCCCATAAAGTATATACATATGTTCTTG
droTak1 scf7180000415820:312770-313026 - GAAT--AATAT-------AATACAAATGTAA----AAGATATAA----------------------------------------------------------------------------------------------TCA--------------------TTTCCAAATTGATTTTAATTTTTT-AAAT-------TTTATTG----------GTCGTTTTGGTCATTGTCATTATCAAGGAACTA--AGGATCCTTCT---------------------------------AATAGTCAAAATA-TTATTTTAAACT------------------CG------------------------------------------------------------------------------------------------------A----------------------------------------------------------------TCAA----------AT-------AG---------ATTATTATACCCGTTACTCGTA----------------------------------------------------GAGT-AAAAGGGTATATTAGATTCGTGCA-------AAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAACTATAT----ATATTCTTG
droEle1 scf7180000486764:4246-4452 + CT--ATA--------TG-----------CTA----TAGTCGTCC----------------------------------------------------------------------------------------------GA---------------------TTTCGAAATTTAAGCC------GT-AA-T-------TCTAAAATATTTAAGCATTAC------------TATATGTCAAAGAACTA--AAA------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA-----------TATTAAGAAACAG--------------------CAA-----------------------------------------------------------AGTTATA---------CTTTTTATACCCTT-----GC-----------------------------------------------------------AGAGGGTATTATAATTTTAGTCA-------GAAGTTTGCAACGCAGTGAAGGAGACGTCTCCGACCCTATAAAGTATAT----ATATTCTTG
droRho1 scf7180000778024:28892-29132 + AGTT--GCCCCAAAAGAAGGA--------------CAAAAAGCA----------------------------GCAGGCCAGTGGTGAGTTGTGAGGTTACTTATATGAATTTTACACC---------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------TGTTTTCTTGTGT------------------------------------TTTTT----------------------------------------------------------AAATTAG----------------------------------TTCATAAAGCTCTAAACAAATGC------------------C----AATGTTACA---------ATAATTATACCCGTTACTCGCA----------------------------------------------------GAGT-AAAAGGGTATATTGTATTCGTGCA-------AAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATAAAGTATAT----ATATTCTTG
droFic1 scf7180000453491:7812-8026 - AAAT--TA---------------------------AAAAAATAT----------------------------------------------------------------------------------------------GTCTA------------------TTGTTAAATTGCCTA-----------GAT--------TTAACA----------T---------------------------------------TTTTCT-----------------------------------------------------------------TA---------TAG---------------------------------TTAGTAAGGTGTT-----CAA----------------TTGGAAAAA-----------AATAGT--TTTAG--------------------TTGAAT--------------------------------------------TTTTTC----ATTATTATG---------ATTTTTATACCCTT-----GCA----------------------------------------------------GAGC-A-AAGGGTATTATAATTTTGGCCA-------GAAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATAT----ATATTCTTG
droKik1 scf7180000301844:24079-24301 - CC--AAG--------AA----TCA-----------AAAAGACCT----------------------------TAAGGCCT--T--------------TTAATATATGGATGTTTAATC---------------------------------------------------------TTAATTTTTT-AT------------------------------------------------------------------------------------------------------------------------------------------A---------TTC---------------------------------GTGTTTTAGTTTTGGTATAGA----------------ATTAGT-------AAGAATAAATAAT---------------------------ATTAATAAA--------------------------------A-------ATTTAAGAGTT-------TT---------ATTTTTATACCCTT-----G-------------------------------------------------------------CAGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAGTAAAGGAGACGTTTCAGACCCTATAAAGTATAT----ATATTCTCG
droAna3 scaffold_13340:23233406-23233636 + AA--AAA--------C-------------AA----CAAAAAGCC-----------------------------------TATTTTAAAATGTC--------------------------AGAAATTCAATTTT-----TAT------------TACTAA-GTTTTT------------TTATTTTATATTTTAAAATC-TA------------------------------------------------TAAAA----AGTATAGTAATAAATTTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAGA----------------------------------G-------GTTTAAGAGTTTTAGTTTCT---------CTTTTTATACCCTT-----GC-----------------------------------------------------------AGAGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATAT----ATATTCTTG
droBip1 scf7180000396713:15806-16043 + ATTC--GCA-C-------AGATCAAA----A----CAGAAATCT------------------------------------------------------------------------------------------------------------------------CGTAGAAGCCCC-----------AGT--------TTGTTA----------A---------------------------------------TTTTCT--------------------------------------------------------TGTAAAATATT---------TTG-ATG----------------CTTAACTGTTCGAA-----------------TGGCTTATCTTACCCTAAACATA--------------------AAAATTCGGCCAAATCGGAAAATTTTTAGAGA------------------------------------AGT-----A----------AT-------AG---------ATTTTTATACTCTT-----GC-----------------------------------------------------------AGAGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGCA-------ACGCATCTCCGACCCTATAAAGTATAT----ATATTCTTG
dp5 XR_group8:5643135-5643352 + GCCT--GACA---------------------------AAA-TA-----TTGTAGATTTATTAGAGACAATCTTAATGTTT-----------------TTCCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGGAAAAGACA----------------TTTCAAGTG-----------GTTTGTATTTGTG--------------------GAAAATTATGATAT--------------------------ACATTTAT----------TT-------GG---------GTTTTTATACCCGATACTCAAA----AT----------------------------------------------GAAT-ATTGGGGTATATTAGATG----TG-------GATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATAT----ATATTCCTG
droPer2 scaffold_642:9304-9549 + CA--AAA--------TA------------CA----TAGTAGTCC----------------------------------------------------------------------------------------------ATC--------------------CCTTGCTCAAGTAACT------TA-ACAT-------TTTATTT----------A--------------------------------------------------------------------------------------------------------CATTCGCTTTCATTTGT------------------------------------TTTTA--------ATCAATTGCTTATTTCAACTTAAACT------T-----------ATTTTCC-----------------------------------------------------AATCAATTGC----A-------AT-------TTTCAAT--TG---------CTCATTATACCCGATACTCAAA----AT----------------------------------------------GAGT-ATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATAT----ATATTCTTG
droWil2 scf2_1100000004511:8580254-8580487 + CA--AGA--------TA------------AA----CATAAAAATGATTTTATAAAT----------------------------------------------T--------TTCCAT-TAGAAATCCAA-------------------------------------------------------------------------TG----------A--------------------------------------------------------------------------------------------------------TTTTTGTT---------C-T---------------------------------ATGTTAGA-ATGAAAAAGTAT----------------TTTAAAATA---------TCATTTGCTTTCGTA--------------------AATATTCATGATAT--------------------------TA-----G----------TT-------CGTTTTCTAAGCTTGTTATACCCT-------------------------------------------------------------TGCA-AAAAGGGTATATTAATTTTGGTCA-------AAAGTGTGCAACGCATAGAAGGAAGCATCTCCGACCATATAAAGTATAT----ATATTCTTG
droVir3 scaffold_12958:355442-355708 + TT--AAG--GT-------GACCCATAAGCCAGTGCCACAAATCA------------------------------------------------------------------------------------ATTTCAATATGCTCATTATTAAAGATGTTGG-CTTTTA------------TTGTTTCGGTATCCGTGATT-TG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA--TA----------------TTTAGACTA-----------GAATTTGACTTAG----------------------------------GGCATGAATATTCAATTTCATGT------------------T----ATTTTTGTT---------CTTCTTATACCCTTAACCCATTAAAAAT---------------------------------------------GGCCA-AAAAGGCTATAACGTATTTCTGCA-------AATGTATGTAACGTGCAGAAGGAAGCATCTACGACCCCATAAAGTATAT----ATATTCTTG
droMoj3 scaffold_6473:7386973-7387218 - AA--AGC--------CA------------------T--AAAGCT----------------------------------------------------------------------------------------------GC----------------TTGGCCCTCGAAA-GGCAGCT------GA-AAAT-------TTGATTA----------G--------------------------------GC-------------TGGCAGCGTATTTAATTCGACTGGTCCTTGCGAGCGGCAAAATGAATTTG------------------------------------------------------------------------------------------------------------------------CAAA--ACTC--------------------GCAAATGAA----------------------------------------AT-------TT-TTTTCCTC---------TTTTTTATACCCTGAACCCATTGAAAAT---------------------------------------------GGGAA-ATCAGGGTATAATGGTTTTGTTGA-------AATGTATGTAACAGGCAGAAGGAGGCGTGGCAGACCCCACAAAGTATAT----ATATTCTTG
droGri2 scaffold_15126:682697-682902 + AATC--AGC--------------------TA----TTGAAAA--------------------------------------------------------------------------------------------------------------------------------TTCAGTT------TT-AAAA-------AATTATA----------G--------------------------------------------------------------------------------------------------------TTATATTT---------TTAATTGAATATCTTTAGAAATTCGAAGCCGCTTGAC-----------------AGG-------------------------------------GTTGCTTTTTAA--------------------TAAAATAAATATATGAC-------------------------------------------------------------------------ATAAATAACA----------------------------------------------------TAAT-ATAAAAGTAT--TCGA--TGTGCA-------AAAGTATATCACATGCAGAACGAAATATTTCCGAGCCCAAAAAGGGAAT----ATATTTCTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GATT--GACAC-------GGCCCAAAAGCCA----CAGAAATCC----------------------------------------------------------------------------------------------GCC--------------------TTTCGAAATTGCCGCT------GT-AAAT-------TCTATTA----------G--------------------------------------------------------------------------------------------------------TTTTTGTT---------TTG---------------------------------ATGGTATTGTTTTACAAGCAA----------------CTTAAAATA-----------AATTATAATTCAG--------------------TTAAATAAATATATTTT----------------------ACC-----G----------CT-------CG---------ATTTTAATACCCGTTACTCATA----------------------------------------------------GGTT-AAAAGGGTATACTAGAT-CGTCGA-------AAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCATATAAAGTATAT----ATATTCTTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGTAGAAGGA.......................................242014.5029000000040383231001589000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCGTT.................................252014.052810005000352965001470000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGTAGAAGGAA......................................251811.612090000001334273601251000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCGT..................................242010.902180061005260352011240000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGTAGAAGGAAG.....................................26167.631220000002351101064000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGTAGAAGGAAGC....................................27164.5673000200010040624000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGTAGAAGG........................................23202.85570000003130121361000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCG...................................23202.75550000200022660190000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGTAGAAGGAAGCG...................................28141.1416000000001000141000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGTAGAAGGAAT.....................................26201.1022000000120000163000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTAGAT-CGTCGA-------AAAA..........................................................2111.00100000000000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATACTAGAT-CGTCGA-------AAAGT.........................................................2411.00100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATACTAGAT-CGTCGA-------AAAGTA........................................................2411.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGAT-CGTCGA-------AA............................................................2511.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGTAGAAGGT.......................................24201.0020000000000100181000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-CGTCGA-------AAAGTATGTAACAGGTAGA...........................................2711.00100000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTAGAT-CGTCGA-------AAAG..........................................................2111.00100000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CGTCGA-------AAAGTATGTAAC..................................................1931.00300003000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATACTAGAT-CGTCGA-------AAAGT.........................................................2511.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AAAAGGGTATACTAGAT-CGTCGA-------AAAG..........................................................2811.00100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATACTAGAT-CGTCGA-------AAAGTATG......................................................2711.00100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGTAGAAGGAAGCGTT.................................23200.7014000000000300110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGTAGAAG.........................................22200.601200000000103080000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGC....................................22200.5511000000000010001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGTAGAAGGAAGT....................................27200.551100000000000047000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGTAGAAGGAAGCGTTT................................24200.501000000000100072000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGTAGAAGGAAGCGTTTC...............................25180.39700000000001051000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCGTTTC...............................27180.39700000012001030000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGTAGAAGGAAGCGT..................................29140.36500000000100013000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCGTTT................................26200.35700020002020001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGTAGAAGGAAGCGTT.................................30140.29400000021100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-------AAAGTATGTAACAGGTAGAAGGA.......................................25160.25400000000000040000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGAAGGAAGCGTT.................................16200.25500000000005000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGTAGAAGGAAGA....................................27200.20400000000000022000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGA.......................................19200.20400000000004000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGTAGAAGGAAGCGTTTCC..............................26160.19300000000000021000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATGTAACAGGTAGAAGGAAGC....................................26190.16300000000000030000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGTAGAAGGAAGCGTTTCCG.............................25130.15200000000000020000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGTAGAAGGAAGCGTT.................................26200.15300000000000021000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGTAGAAGGAAGCGTTTC...............................23200.15300000000000030000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-------AAAGTATGTAACAGGTAGAAGGAA......................................26150.13200000000000020000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGTAGAAGGAAGCGTTTCC..............................24180.11200000000001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGTAGAAGGAAGCGT..................................25200.10200000000002000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGTAGAAGGAAGCGTT.................................24200.10200010000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCGA..................................24200.10200000000000011000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAG.....................................21200.10200000001001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGTAGAAGT........................................23200.10200000000000020000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATGTAACAGGTAGAAG.........................................21200.10200000000200000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGTAGAAGGAAGCGTTTCCGA............................26120.08100000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTAGAAGGAAGCGTTTCCGACCATA.......................27120.08100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGAAGGAAGCGTTTCCGAC...........................22160.06100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGTAGAAGGAAGCGTTTCCGT............................26170.06100000000000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-------AAAGTATGTAACAGGTAGAAGG........................................24170.06100000000100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGTAGAAGGAAGCGTTTC...............................26180.06100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAGGAAGCGTTTCCGACC..........................22200.05100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGTAGAAGGAG......................................25200.05100000000000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGT..............................................17200.05100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGTAGAAGGAAGCGTTA................................22200.05100000000000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGTAGAAGGAAGCGTTTCC..............................23200.05100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATGTAACAGGTAGAAGGAA......................................23200.05100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGTAGAAGGAAGC....................................17200.05100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATGTAACAGGTAGAAGGA.......................................23200.05100000000000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGTAGAAGGAAGCGTT.................................21200.05100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGTAGAA..........................................21200.05100000000000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGTAGAAGGAAGCGTT.................................20200.05100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGTAGAAGGC.......................................24200.05100000000000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGTAGAAGGAAGCGTTT................................22200.05100000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCGTC.................................25200.05100000000010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGTAGAAGGAAGCGTTTCA..............................26200.05100000000000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGTAACAGGTAGAAGGAAGC....................................24200.05100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGTAACAGGTAGAAGGAAGCGTT.................................27200.05100000000000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGTAACAGGTAGAAGGAAGCGT..................................26200.05100000000000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGTAGAAGGAAGCGTTT................................23200.05100000000000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTTCCGACCATATAAAGTATAT----A........27200.05100000000000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGTAGAAGGAAGCGTTA................................24200.05100000000000010000
droSec2
GATT--GACAC-------GGCCCAAAAGCCA----CAGAAATCC----------------------------------------------------------------------------------------------GCC--------------------TTTCGAAATTGCCGCT------GT-AAAT-------TCTATTA----------G--------------------------------------------------------------------------------------------------------TTTTTGTT---------TTG---------------------------------ATGGTATTGTTTTACAAGCAA----------------CTTAAAATA-----------AATTATAATTCAG--------------------TTAAATAAATATATTTT----------------------ACC-----G----------CT-------CG---------ATTATAATACCCGTTACTCATA----------------------------------------------------GGTT-AAAAGGGTATACTAGAT-CGTCGA-------AAAGTATGTAAAAGGTAGAAGGAAGCGTTTCAGACCATATAAAGTATAT----GT-------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
GATC--GACCC-------GGCCCAAA----------AGAAATCC----------------------------------------------------------------------------------------------GCC--------------------TTTCGAAATTGCCGCT------GT-AAAT-------TCTATTA----------G--------------------------------------------------------------------------------------------------------TTTT---T---------TGG---------------------------------ATGGCATTGTTTTACAAGCAA----------------CTTGAAATA-----------AATTATAATTCAG--------------------TTAAATAAACATATGTT----------------------ACA-----G----------CT-------CG---------ATTTTAA-AACAGAGCTATATA----------------------------------------------------GAGTATACAGAGTATGCTAGAT-TGTTGA-------AAAGTATGTAACACGTAGAAGGAAGCGTTTCCGTCCA---------TAT----ATATTCTTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATGTAACACGTAGAAGGAAGC....................................25116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003700000000000000000000000000000000000000000000000000000000000000000000001020000300000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATGTAACACGTAGAAGGAAGCG...................................26111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000000003420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATGTAACACGTAGAAGGAAGCGT..................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000100000003100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGA-------AAAGTATGTAACACGTAGAAGGA.......................................2732.3370000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000010004000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATGTAACACGTAGAAGGAAGCGTT.................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACGTAGAAGGAAGCGTTTCCGTC...........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA-------AAAGTATGTAACACGTAGAAGGAAG.....................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-AACAGAGCTATATA----------------------------------------------------GAGT..............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-AACAGAGCTATATA----------------------------------------------------GAGTATACA.........................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGAGTATGCTAGAT-TGTTGA-------A.............................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTAA-AACAGAGCTATATA----------------------------------------------------..................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTT----------------------ACA-----G----------CT-------CG---------ATTTTA......................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACATATGTT----------------------ACA-----G----------CT-------CG---------ATT.........................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATGTAACACGTAGAAGGAAGCG...................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTT----------------------ACA-----G----------CT-------CG---------ATTTTAA-AACAGA..............................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................TTTT---T---------TGG---------------------------------ATGGCATTGTTTTACAAGCA................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACACGTAGAAGGAAGCG...................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAA-AACAGAGCTATATA----------------------------------------------------GAGTATA...........................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACACGTAGAAGGAAGCGTT.................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................T---------TGG---------------------------------ATGGCATTGTTTTAC.....................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................AAATCC----------------------------------------------------------------------------------------------GCC--------------------TTTCGAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA-------AAAGTATGTAACACGTAGAAGGA.......................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGA-------AAAGTATGTAACACGTAGAA..........................................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGA-------AAAGTATGTAACACGTAGAAGG........................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CC--CAA--------TA----------GCGA----TATAAATCT-----TT----------------------------------------------TAACTA--------TGTTGT-TATAGCTACAATAGTT----TC----------------TTTTCC----------------------------------------------------------------------------------------------------------------------------------------------------------TTT------------------GG---------------------------------A-------------------------------------------------------------------------------------------------------------------------------------TTTT----------GT-------CT---------ATTTTTATACTCGTTACTCGTA----AAGTAAAAGCAAAGACATTCAAATTAGAATTACATATTCTAATGTCTATGGT-GAAAGGGTATACTAGATTCGTTGA-------AAAGTATGCAACAGGCAGAAGGAAACGTTTCCGACCACATAAAGTATAT----GTATTCTTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATACTAGATTCGTTGA-------AAAGT.........................................................25200.0510100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAAACGT..................................19200.0510000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATACTAGATTCGTTGA-------AAAG..........................................................25200.0511000000
droYak3
TATT--GTCTA-------GGCCAGAAATATA----TAGCAGCCC----------------------------------------------------------------------------------------------TCG--------------------TATTTAAA-TGCTGCA------AT-CTAT-------TCAATTA----------C--------------------------------AT-------------TCTTATATTACAATAATC------------------------------------------------------------------GACCCTA----------------------------------------------------------TAAAATA-----------TAATAAA----------------------------AAATACATATAAA-A----------------------ACC-----G--TTTCTGATCA---TCTGTT---------ATTTTTATACCCGTTACTCGTA----------------------------------------------------GAGT-AAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTAACAGGCAGAAGGAAGGGTTTCCGACCATATAAAGTATAT----ATATTCTTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGGGTTTCC..............................26208.451690016900000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGGGTTTCCGAC...........................27201.3527072000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAGGCAGA...........................................27201.2525002500000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTA----------------------------------------------------GAGT-AAAAGGGTATACTAG..............................................................................24201.1022022000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAAGGAAGGGT..................................23200.5010000000100000
.......................GAAATATA----TAGCAGCCC----------------------------------------------------------------------------------------------TCG--------------------T......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.33101000000000
.ATT--GTCTA-------GGCCAGAAATATA----TAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.33101000000000
.............................................................................................................................................................................................................................................................................TTACAATAATC------------------------------------------------------------------GACCCTA----------------------------------------------------------TA...........................................................................................................................................................................................................................................................................................................2030.33100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAAGGGTTTCCGACC..........................27200.15300300000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCAGAAGGAAGGGTTTCCGACCA.........................26200.10200020000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATGTAACAGGCAGAAGGAAGGGT..................................27200.10200200000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGGGTTTCCGA............................26200.10200000020000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAAGGGTTTCCGACCA.........................23200.10200200000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTTTCCGACCATATAAAGTATA..............25200.05100010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGGGTTTC...............................23200.05100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAAGGGTTTCCGACCATATA.....................27200.05100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAGAAGGAAGGGTTTCCGACCAT........................26200.05100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGCAGAAGGAAGGGT..................................21200.05100001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATACTAGATTCGTTGA-------AAA...........................................................22200.05101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTAGATTCGTTGA-------AAA...........................................................21200.05110000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGTT.......................................................................22200.05100010000000
droEug1
AA--AAAG---------------------TA----TGGAAGGCA----------------------------------------------------------------------------------------------GCT--------------------TTTCC-----GACCCT------AT-AAAT-------TATATA--------------------------------------------------------------------------------------------------------------------T-----TT---------TTGA--------------------------------TCAGG--------ATCAATAG-------------------------------------------------CCAAGTCGCAACAT-------TTAATAAGT----GT--------------------CAAATG-----AGG--------GT-------TT---------ATTTTTATACCCGTTACTCGTA----------------------------------------------------GAGT-AAAAGGGTATATTAGATTCGTTGA-------AAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATAT----ATATTCTTGSizeHit CountTotal NormTotal
No Reads
droBia1
TATT--TATAC-------GATCCTTGAGGCG----ACGAACTCT----------------------------------------------------------------------------------------------TCT--------------------TGCAAAAAATTATTAT------TT-AATT-------TTTGTTC----------G--------------------------------------------------------------------------------------------------------TTTT---T---------CAT---------------------------------AT------ATTTTATTAGGATCTTATCACTAGTGGAGCT------TTGGTTACAATAAGAAAATCCACAT--------------------GTAAATAAATAAAGGGA----------------------ATG-----G----------AA-------GT---------GTTTTTATACCCGTTACTCGTA----------------------------------------------------GAGT-AAAAGGGTATACTAGATTTAGCGG-------GTAGTATATAACAGGTAGAAGGAAGCGCTTCCGACCCCATAAAGTATATACATATGTTCTTGSizeHit CountTotal NormTotal
No Reads
droTak1
GAAT--AATAT-------AATACAAATGTAA----AAGATATAA----------------------------------------------------------------------------------------------TCA--------------------TTTCCAAATTGATTTTAATTTTTT-AAAT-------TTTATTG----------GTCGTTTTGGTCATTGTCATTATCAAGGAACTA--AGGATCCTTCT---------------------------------AATAGTCAAAATA-TTATTTTAAACT------------------CG------------------------------------------------------------------------------------------------------A----------------------------------------------------------------TCAA----------AT-------AG---------ATTATTATACCCGTTACTCGTA----------------------------------------------------GAGT-AAAAGGGTATATTAGATTCGTGCA-------AAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAACTATAT----ATATTCTTGSizeHit CountTotal NormTotal
No Reads
droEle1
CT--ATA--------TG-----------CTA----TAGTCGTCC----------------------------------------------------------------------------------------------GA---------------------TTTCGAAATTTAAGCC------GT-AA-T-------TCTAAAATATTTAAGCATTAC------------TATATGTCAAAGAACTA--AAA------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA-----------TATTAAGAAACAG--------------------CAA-----------------------------------------------------------AGTTATA---------CTTTTTATACCCTT-----GC-----------------------------------------------------------AGAGGGTATTATAATTTTAGTCA-------GAAGTTTGCAACGCAGTGAAGGAGACGTCTCCGACCCTATAAAGTATAT----ATATTCTTGSizeHit CountTotal NormTotal
No Reads
droRho1
AGTT--GCCCCAAAAGAAGGA--------------CAAAAAGCA----------------------------GCAGGCCAGTGGTGAGTTGTGAGGTTACTTATATGAATTTTACACC---------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------TGTTTTCTTGTGT------------------------------------TTTTT----------------------------------------------------------AAATTAG----------------------------------TTCATAAAGCTCTAAACAAATGC------------------C----AATGTTACA---------ATAATTATACCCGTTACTCGCA----------------------------------------------------GAGT-AAAAGGGTATATTGTATTCGTGCA-------AAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATAAAGTATAT----ATATTCTTGSizeHit CountTotal NormTotal
No Reads
droFic1
AAAT--TA---------------------------AAAAAATAT----------------------------------------------------------------------------------------------GTCTA------------------TTGTTAAATTGCCTA-----------GAT--------TTAACA----------T---------------------------------------TTTTCT-----------------------------------------------------------------TA---------TAG---------------------------------TTAGTAAGGTGTT-----CAA----------------TTGGAAAAA-----------AATAGT--TTTAG--------------------TTGAAT--------------------------------------------TTTTTC----ATTATTATG---------ATTTTTATACCCTT-----GCA----------------------------------------------------GAGC-A-AAGGGTATTATAATTTTGGCCA-------GAAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATAT----ATATTCTTGSizeHit CountTotal NormTotal
No Reads
droKik1
CC--AAG--------AA----TCA-----------AAAAGACCT----------------------------TAAGGCCT--T--------------TTAATATATGGATGTTTAATC---------------------------------------------------------TTAATTTTTT-AT------------------------------------------------------------------------------------------------------------------------------------------A---------TTC---------------------------------GTGTTTTAGTTTTGGTATAGA----------------ATTAGT-------AAGAATAAATAAT---------------------------ATTAATAAA--------------------------------A-------ATTTAAGAGTT-------TT---------ATTTTTATACCCTT-----G-------------------------------------------------------------CAGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAGTAAAGGAGACGTTTCAGACCCTATAAAGTATAT----ATATTCTCGSizeHit CountTotal NormTotal
No Reads
droAna3
AA--AAA--------C-------------AA----CAAAAAGCC-----------------------------------TATTTTAAAATGTC--------------------------AGAAATTCAATTTT-----TAT------------TACTAA-GTTTTT------------TTATTTTATATTTTAAAATC-TA------------------------------------------------TAAAA----AGTATAGTAATAAATTTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAGA----------------------------------G-------GTTTAAGAGTTTTAGTTTCT---------CTTTTTATACCCTT-----GC-----------------------------------------------------------AGAGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATAT----ATATTCTTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCAGTGAAGGAGACATCTCCGACCC.........................28202.15430430000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCAACGCAGTGAAGGAGACATCTCC..............................28201.00200120080
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGTGCAACGCAGTGAAGGA.......................................22200.357000007
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAATTTTGGTCA-------AAAGTGTGCAAC..................................................27200.357000070
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-------AAAGTGTGCAACGCAGTGAAGGAGA.....................................27200.306000060
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCAACGCAGTGAAGGA.......................................20200.204400000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCAGTGAAGGAGACATC.................................19200.204300001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACGCAGTGAAGGAGACAT..................................21200.153030000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTGGTCA-------AAAGTGTGCAACGCAG..............................................27200.102020000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTGCAACGCAGTGAAGGA.......................................21200.102020000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----GC-----------------------------------------------------------AGAGGGTATTATAATT............................................................................20200.051001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACGCAGTGAAGGAGA.....................................19200.051000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCA-------AAAGTGTGCAACGC................................................19200.051000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCA-------AAAGTGTGCAACGCAGTGAAGG........................................26200.051001000
droBip1
ATTC--GCA-C-------AGATCAAA----A----CAGAAATCT------------------------------------------------------------------------------------------------------------------------CGTAGAAGCCCC-----------AGT--------TTGTTA----------A---------------------------------------TTTTCT--------------------------------------------------------TGTAAAATATT---------TTG-ATG----------------CTTAACTGTTCGAA-----------------TGGCTTATCTTACCCTAAACATA--------------------AAAATTCGGCCAAATCGGAAAATTTTTAGAGA------------------------------------AGT-----A----------AT-------AG---------ATTTTTATACTCTT-----GC-----------------------------------------------------------AGAGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGCA-------ACGCATCTCCGACCCTATAAAGTATAT----ATATTCTTGSizeHit CountTotal NormTotal
No Reads
dp5
GCCT--GACA---------------------------AAA-TA-----TTGTAGATTTATTAGAGACAATCTTAATGTTT-----------------TTCCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGGAAAAGACA----------------TTTCAAGTG-----------GTTTGTATTTGTG--------------------GAAAATTATGATAT--------------------------ACATTTAT----------TT-------GG---------GTTTTTATACCCGATACTCAAA----AT----------------------------------------------GAAT-ATTGGGGTATATTAGATG----TG-------GATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATAT----ATATTCCTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................................AGTG-----------GTTTGTATTTGTG--------------------GAAA......................................................................................................................................................................................................................................................2111.0010000000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----TG-------GATGTGTGTAACGTC...............................................1960.3320200000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATG----TG-------GATGTGTGTAACGTC...............................................2060.3320100001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATACTCAAA----AT----------------------------------------------GAAT-ATTGGGGT.....................................................................................2550.2010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGGAATCGTTTCCGACCCCA.......................24200.2040400000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCCATAAAGTATAT----ATA......28200.2040000000040
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATG----TG-------GATGTGTGTAACGTCC..............................................2160.1710100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----TG-------GATGTGTGTAACGTCCA.............................................2160.1710100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----TG-------GATGTGTGTAACGTCC..............................................2060.1710100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGAAGGAATCGTTTCCG.............................21200.1020000020000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCCATA.....................24200.1020000000020
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAAGGAATCGTTTCCGACCCCAT......................26200.1020000000020
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCCATAAAGTA................29200.1020200000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAATCGTTTCCGACCCCAT......................22200.1020200000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGACCCCATAAAGTATAT----ATATTCC..27120.0810000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACCCGATACTCAAA----AT----------------------------------------------GAA...............................................................................................22130.0810100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGTCCAGAAG.........................................20200.0510000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACCCGATACTCAAA----AT----------------------------------------------GA................................................................................................21200.0510010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAAGGAATCGTTTCCGACCCC........................24200.0510000000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTATACCCGATACTCAAA----A.................................................................................................................................................23200.0510100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTAACGTCCAGAAGGA.......................................21200.0510001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTATACCCGATACTCA........................................................................................................................................................20200.0510100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCGACCCCATAAAGTA................20200.0510100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTATACCCGATACTCAA.......................................................................................................................................................20200.0510000100000
droPer2
CA--AAA--------TA------------CA----TAGTAGTCC----------------------------------------------------------------------------------------------ATC--------------------CCTTGCTCAAGTAACT------TA-ACAT-------TTTATTT----------A--------------------------------------------------------------------------------------------------------CATTCGCTTTCATTTGT------------------------------------TTTTA--------ATCAATTGCTTATTTCAACTTAAACT------T-----------ATTTTCC-----------------------------------------------------AATCAATTGC----A-------AT-------TTTCAAT--TG---------CTCATTATACCCGATACTCAAA----AT----------------------------------------------GAGT-ATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATAT----ATATTCTTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAAGGAATCGTTTCCG.............................19200.65130000013
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGATTTGTGGTAAAAGTGG.............................................................23200.55110110000
CA--AAA--------TA------------CA----TAGTAGTCC----------------------------------------------------------------------------------------------ATC--------------------CCTTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2740.502020000
...............TA------------CA----TAGTAGTCC----------------------------------------------------------------------------------------------ATC--------------------CCTTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.402020000
...............TA------------CA----TAGTAGTCC----------------------------------------------------------------------------------------------ATC--------------------CCTTGCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2750.402020000
...............TA------------CA----TAGTAGTCC----------------------------------------------------------------------------------------------ATC--------------------CCTTGCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2450.402020000
................A------------CA----TAGTAGTCC----------------------------------------------------------------------------------------------ATC--------------------CCTTGCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2650.402020000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGATGTGTGTAACGTC...............................................19200.255500000
CA--AAA--------TA------------CA----TAGTAGTCC----------------------------------------------------------------------------------------------ATC--------------------CCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.251010000
.A--AAA--------TA------------CA----TAGTAGTCC----------------------------------------------------------------------------------------------ATC--------------------CCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.251010000
......................................TAGTCC----------------------------------------------------------------------------------------------ATC--------------------CCTTGCTCAAGTAACT------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2540.251010000
CA--AAA--------TA------------CA----TAGTAGTCC----------------------------------------------------------------------------------------------ATC--------------------C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.251010000
CA--AAA--------TA------------CA----TAGTAGTCC----------------------------------------------------------------------------------------------ATC--------------------CCTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.251010000
...................................TAGTAGTCC----------------------------------------------------------------------------------------------ATC--------------------CCTTGCTCAAGTAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2740.251010000
.........................................TCC----------------------------------------------------------------------------------------------ATC--------------------CCTTGCTCAAGTAACT------TA-AC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.251010000
.........................................TCC----------------------------------------------------------------------------------------------ATC--------------------CCTTGCTCAAGTAACT------TA-ACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2740.251010000
................A------------CA----TAGTAGTCC----------------------------------------------------------------------------------------------ATC--------------------CCTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.201010000
...............TA------------CA----TAGTAGTCC----------------------------------------------------------------------------------------------ATC--------------------CCTTGCTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2550.201010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGATGTGTGTAACGTC...............................................20200.204040000
...............TA------------CA----TAGTAGTCC----------------------------------------------------------------------------------------------ATC--------------------CCTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.201010000
...............TA------------CA----TAGTAGTCC----------------------------------------------------------------------------------------------ATC--------------------CCTTGCTCAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2850.201010000
......A--------TA------------CA----TAGTAGTCC----------------------------------------------------------------------------------------------ATC--------------------CCTTGCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2550.201010000
......A--------TA------------CA----TAGTAGTCC----------------------------------------------------------------------------------------------ATC--------------------CCTTGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2450.201010000
.A--AAA--------TA------------CA----TAGTAGTCC----------------------------------------------------------------------------------------------AA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.201010000
....AAA--------TA------------CA----TAGTAGTCC----------------------------------------------------------------------------------------------ATC--------------------CCTTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2550.201010000
......................................TAGTCC----------------------------------------------------------------------------------------------ATC--------------------CCTTGCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.201010000
...............TA------------CA----TAGTAGTCC----------------------------------------------------------------------------------------------ATC--------------------CCTTGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2350.201010000
.............................CA----TAGTAGTCC----------------------------------------------------------------------------------------------ATC--------------------CCTTGCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2550.201010000
......A--------TA------------CA----TAGTAGTCC----------------------------------------------------------------------------------------------ATC--------------------CCTTGCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2850.201010000
................A------------CA----TAGTAGTCC----------------------------------------------------------------------------------------------ATC--------------------CCTTGCTCAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2750.201010000
.......................................................................................................................................................................................................................................................................................................................................................................................................TGCTTATTTCAACTTAAACT------T-----------ATTT.......................................................................................................................................................................................................................................................................................2560.171010000
..................................................................................................................................................................................................................................................................................................................................................................................................TCAATTGCTTATTTCAACTTAAACT------.......................................................................................................................................................................................................................................................................................................2560.171010000
..................................................................................................................................................................................................................................................................................................................................................................................................TCAATTGCTTATTTCAACTTAAACT------T-----------ATT........................................................................................................................................................................................................................................................................................2960.171010000
.......................................................................................................................................................................................................................................................................................................................................................................................TA--------ATCAATTGCTTATTTCAACTTAAAC..............................................................................................................................................................................................................................................................................................................2760.171010000
...............................................................................................................................................................................................................................................................................................................................................................................................................TCAACTTAAACT------T-----------ATTTTCC-----------------------------------------------------AATCAAT........................................................................................................................................................................................................................2770.141010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAA----AT----------------------------------------------GAGT-ATTGGGGTATATTAGATT...........................................................................28200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAA----AT----------------------------------------------GAGT-ATTGGGGTAT...................................................................................20200.051000001
droWil2
CA--AGA--------TA------------AA----CATAAAAATGATTTTATAAAT----------------------------------------------T--------TTCCAT-TAGAAATCCAA-------------------------------------------------------------------------TG----------A--------------------------------------------------------------------------------------------------------TTTTTGTT---------C-T---------------------------------ATGTTAGA-ATGAAAAAGTAT----------------TTTAAAATA---------TCATTTGCTTTCGTA--------------------AATATTCATGATAT--------------------------TA-----G----------TT-------CGTTTTCTAAGCTTGTTATACCCT-------------------------------------------------------------TGCA-AAAAGGGTATATTAATTTTGGTCA-------AAAGTGTGCAACGCATAGAAGGAAGCATCTCCGACCATATAAAGTATAT----ATATTCTTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGTCA-------AAAGTGTGCAACGCA...............................................24200.6012000120
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTTGGTCA-------AAAGTGTGCAACGCA...............................................27200.6012012000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTGGTCA-------AAAGTGTGCA....................................................21200.10200200
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCA-------AAAGTGTGCAACGCA...............................................21200.05101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCATAGAAGGAAGCATCTCC..............................22200.05101000
droVir3
TT--AAG--GT-------GACCCATAAGCCAGTGCCACAAATCA------------------------------------------------------------------------------------ATTTCAATATGCTCATTATTAAAGATGTTGG-CTTTTA------------TTGTTTCGGTATCCGTGATT-TG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA--TA----------------TTTAGACTA-----------GAATTTGACTTAG----------------------------------GGCATGAATATTCAATTTCATGT------------------T----ATTTTTGTT---------CTTCTTATACCCTTAACCCATTAAAAAT---------------------------------------------GGCCA-AAAAGGCTATAACGTATTTCTGCA-------AATGTATGTAACGTGCAGAAGGAAGCATCTACGACCCCATAAAGTATAT----ATATTCTTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCA-------AATGTATGTAACGTGCAGAAGG........................................2621.503001000000000000000000000200000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACGTGCAGAAGGAAGCATC.................................2521.002002000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCA-------AATGTATGTAACGTGCAG............................................2221.002000000000000000000000001100000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACGTGCAGAAGGAAGCATC.................................2621.002000000000000000000000000010000000000010000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCA-------AATGTATGTAACGTGCAGAA..........................................2420.501000000000000000000000001000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTAG----------------------------------GGCATGAATATTCAATTTC.........................................................................................................................................................................................................................2620.501000000000000000000000000000000001000000000000000000000000000000
TT--AAG--GT-------GACCCATAAGCCAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.501001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTGCA-------AATGTATGTAACGTGC..............................................2420.501001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................GACTA-----------GAATTTGACTTAG----------------------------------GGCC........................................................................................................................................................................................................................................2220.501001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TA----------------TTTAGACTA-----------GAATTTGACT.................................................................................................................................................................................................................................................................................2120.501000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CTA-----------GAATTTGACTTAG----------------------------------GGCATGAATAT.................................................................................................................................................................................................................................2720.501000010000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................AAGATGTTGG-CTTTTA------------TT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501000000000000000000000000100000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGCA-------AATGTATGTAACGTGC..............................................2320.501000000000000000000000001000000000000000000000000000000000000000
.......................................................................................................................................................................................TCGGTATCCGTGATT-TG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA--TA----------------TTTAGAC........................................................................................................................................................................................................................................................................................................2920.501001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAAT---------------------------------------------GGCCA-AAAAGGCTATAACGTA.............................................................................2920.501000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................................................TCCGTGATT-TG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA--TA----------------TTTAGACTA-----------GA.........................................................................................................................................................................................................................................................................................2720.501100000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGAAGGAAGCATCTACGACCCCAT......................2720.501000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACGTGCAGAAGGAAGCA...................................2420.501000000000000000000000000000000000001000000000000000000000000000
..................................................................................................................................................................................TTGTTTCGGTATCCGTGATT-TG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA--TA----------------T..............................................................................................................................................................................................................................................................................................................2820.501000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCATTAAAAAT---------------------------------------------GGCCA-AAAAGGCTA....................................................................................2820.501000000000000000000000000000000000000010000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCA-------AATGTATGTAACGTGCAGA...........................................2320.501000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACGTGCAGAAGGAAGC....................................2220.501000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-------AATGTATGTAACGTGCAGAAGGA.......................................2620.501000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................TTTCGGTATCCGTGATT-TG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA--TA----------------TTT............................................................................................................................................................................................................................................................................................................2720.501000000000000000000000000000000000000010000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT---------------------------------------------GGCCA-AAAAGGCTATAACGTATTTC.........................................................................2720.501001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGGAAGCATCTACGACC..........................21200.051000000100000000000000000000000000000000000000000000000000000000
droMoj3
AA--AGC--------CA------------------T--AAAGCT----------------------------------------------------------------------------------------------GC----------------TTGGCCCTCGAAA-GGCAGCT------GA-AAAT-------TTGATTA----------G--------------------------------GC-------------TGGCAGCGTATTTAATTCGACTGGTCCTTGCGAGCGGCAAAATGAATTTG------------------------------------------------------------------------------------------------------------------------CAAA--ACTC--------------------GCAAATGAA----------------------------------------AT-------TT-TTTTCCTC---------TTTTTTATACCCTGAACCCATTGAAAAT---------------------------------------------GGGAA-ATCAGGGTATAATGGTTTTGTTGA-------AATGTATGTAACAGGCAGAAGGAGGCGTGGCAGACCCCACAAAGTATAT----ATATTCTTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-------AATGTATGTAACAGGCAGAAG.........................................23200.102200000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGA-------AATGTATGTAACAGGC..............................................23200.051100000
droGri2
AATC--AGC--------------------TA----TTGAAAA--------------------------------------------------------------------------------------------------------------------------------TTCAGTT------TT-AAAA-------AATTATA----------G--------------------------------------------------------------------------------------------------------TTATATTT---------TTAATTGAATATCTTTAGAAATTCGAAGCCGCTTGAC-----------------AGG-------------------------------------GTTGCTTTTTAA--------------------TAAAATAAATATATGAC-------------------------------------------------------------------------ATAAATAACA----------------------------------------------------TAAT-ATAAAAGTAT--TCGA--TGTGCA-------AAAGTATATCACATGCAGAACGAAATATTTCCGAGCCCAAAAAGGGAAT----ATATTTCTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 04:54 AM