ID:

dsi_4336

 Coordinate:

3r:4132245-4132503 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-3.1 -2.5 -2.4

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GGCTGAGATGGATAATGAAGACGATCCGGATACGGCTCCTGAGCCTGCCCGTGTACCTCCTCTCATAATGGAGCCGCCGCCACTCCTTGAAATAAAATCGAAACTAAGAAACCAGGACTTCTAGCTGCAATAAGATACTGCTTAGCACCTAGTCCATAAGACTGTAAAATATTTGTATTAAAGCGAAGCAATGTCAAATGTTTTTTTAATACCTTTAAGTATCTATCTCAACCAATTCAACCAATGCCTAAGGTTAAGAAATTAGAACAAGTTACTAAATTCCTTCTTCTGTATTCGGCTTTCTTCCAGAATTCGACTACGGACATGGACAGTATCGCGGCAACAACCCGCAGATCCAG
*********************************************************************************************************************************************************************************((((((.((((((........))))))........))))))..................................*********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 M024
male body		 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
........TGGATAATGAAGACGATCCGGATACGGC................................................................................................................................................................................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TCTCAACCAATTCAACCAATGCCTAAG........................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................TTAAAGCGAAGCAATGTCAAAT................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................TAGAATTCGACTACGGACATGGACAG........................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................TCAGAATTCGACTACGGACATGGACAGTATC....................... 31 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................TAAATTCCTTCTTCTGTATT................................................................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................CATGGACAGTATCGCGGCAACAACC........... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................CGAAACTAAGGAACCAGGACTTCTAGC.......................................................................................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................TCTGTAAAATATTTGTATTAAAGC............................................................................................................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................AAGCGAAGCAATGTCAA.................................................................................................................................................................. 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................GAAACCAGGACTTTTACCT......................................................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................................................................................................................ACTACGGACGTGGAC............................. 15 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................GACAGAATCGCTGCAGCAACC........... 21 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................................................................................................TATGTGGCTTTCTTCCAGGATT.............................................. 22 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................TTGACAGTATCCCGGCA................. 17 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................CCGAATGCCTAAGGTT........................................................................................................ 16 2 20 0.10 2 0 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................ATAAAACTGTAAATTATTTG........................................................................................................................................................................................ 20 2 12 0.08 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................GTTACGAAAGTAGAACA.......................................................................................... 17 2 17 0.06 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................AGAAGACTGTAAAGAATTTG........................................................................................................................................................................................ 20 3 19 0.05 1 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................................................................................................TGCCTATAGTTAAGAA................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................ACCAGGACTTTTACCT......................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................TGTATTCGGCTTTCTTTGAA.................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
...TGAGATGGATAATGGAC................................................................................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CCGACTCTACCTATTACTTCTGCTAGGCCTATGCCGAGGACTCGGACGGGCACATGGAGGAGAGTATTACCTCGGCGGCGGTGAGGAACTTTATTTTAGCTTTGATTCTTTGGTCCTGAAGATCGACGTTATTCTATGACGAATCGTGGATCAGGTATTCTGACATTTTATAAACATAATTTCGCTTCGTTACAGTTTACAAAAAAATTATGGAAATTCATAGATAGAGTTGGTTAAGTTGGTTACGGATTCCAATTCTTTAATCTTGTTCAATGATTTAAGGAAGAAGACATAAGCCGAAAGAAGGTCTTAAGCTGATGCCTGTACCTGTCATAGCGCCGTTGTTGGGCGTCTAGGTC
***********************************************************************************************************((((((.((((((........))))))........))))))..................................********************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
........................................................................................................................................................................................................................................................................................................CCGAAAGAAGGTCTTAAGCTG.......................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
.....................................................................................................TTGATTCATTGTTCCTGAAGA............................................................................................................................................................................................................................................. 21 2 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................GTGCTAGCGCCGTTGTTAGGCG........ 22 3 1 1.00 1 0 0 1 0 0 0 0
......................................................................................................................AAGATCGACGTTATT.................................................................................................................................................................................................................................. 15 0 2 0.50 1 0 0 0 1 0 0 0
.............................................................................................TTGTAGCTTTGGTTCTCTGGT..................................................................................................................................................................................................................................................... 21 3 5 0.20 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................GTTGGTTCAGTTGGTTAAG................................................................................................................ 19 2 10 0.10 1 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................................................................................................................TGCCTCTACATGTCATA........................ 17 2 10 0.10 1 0 0 0 0 0 1 0
..............................................................................................................................................................................................................................................................................CTATGATTTAAGGAA.......................................................................... 15 1 13 0.08 1 0 0 1 0 0 0 0
.............................................................................................................................................................................................TTACAGTTTACTAGAAAA........................................................................................................................................................ 18 2 19 0.05 1 0 0 0 0 0 0 1
............................................................................................................................................................................................................................................................................................................................................ATAGGCCCCTTGTTGGGC......... 18 3 20 0.05 1 0 0 0 1 0 0 0

Generated: 04/23/2015 at 08:39 PM