ID:dsi_4325 |
Coordinate:3r:4730595-4730744 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -14.4 | -14.4 | -14.2 |
 |
 |
 |
exon [3r_4730465_4730594_-]; CDS [3r_4730465_4730594_-]; intron [3r_4730595_4730983_-]
No Repeatable elements found
| --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CGACATAAACTTTTACAAAACAATGGGCGAACTTACTTGGCCAAGTAGTTACTGGTAAAACATAAAACAAATATACCTCTTTCAATACCTCTTAGAACAAAGTTGAAATAGGACCTCAAGATTTAAATACCTGATTGAAAAATACATATTTGAATATCCAATTTAATTGAGCTATTTTTACATCTCACTCGATTCCTTAGCCCTCGATGTCATACTGTACAGTGCGAACTTTGCTGGCATGAAACTGGCC **************************************************..(((....................(((.(((((((...............))))))).)))........(((((((((..(((((....))).)))))))))))..)))....(((((((................)))))))......************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M025 embryo |
SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|
| ....................................................................................ATACCTCTTAGAACAAAGTTGAAAT............................................................................................................................................. | 25 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| ...........................................................................................................................TAAAGACCTGATTGAAAAA............................................................................................................ | 19 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 |
| ........................................................................................................................................................................................................CCCTCGATGTCATACTGTACAGTGC......................... | 25 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ........................................................................................................................................................................................................................GTACCGTGCGAACGTTGTT............... | 19 | 3 | 9 | 0.11 | 1 | 0 | 0 | 1 |
| ................................................................................................ACAAAGTTGGAATGGGCCC....................................................................................................................................... | 19 | 3 | 15 | 0.07 | 1 | 1 | 0 | 0 |
| .............................................TAGTTACCGGTAAAAAA............................................................................................................................................................................................ | 17 | 2 | 20 | 0.05 | 1 | 0 | 0 | 1 |
|
GCTGTATTTGAAAATGTTTTGTTACCCGCTTGAATGAACCGGTTCATCAATGACCATTTTGTATTTTGTTTATATGGAGAAAGTTATGGAGAATCTTGTTTCAACTTTATCCTGGAGTTCTAAATTTATGGACTAACTTTTTATGTATAAACTTATAGGTTAAATTAACTCGATAAAAATGTAGAGTGAGCTAAGGAATCGGGAGCTACAGTATGACATGTCACGCTTGAAACGACCGTACTTTGACCGG
**************************************************..(((....................(((.(((((((...............))))))).)))........(((((((((..(((((....))).)))))))))))..)))....(((((((................)))))))......************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | GSM343915 embryo |
SRR553488 RT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
SRR553486 Makindu_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|---|
| .............................................................TTTTTTGTTTATATGGAGA.......................................................................................................................................................................... | 19 | 1 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 |
| .............................................................................AGAAAGTCACGGAGACTCTT......................................................................................................................................................... | 20 | 3 | 14 | 0.07 | 1 | 0 | 1 | 0 | 0 |
| ....................................................................ATTATATGGAGAAAGTAA.................................................................................................................................................................... | 18 | 2 | 15 | 0.07 | 1 | 1 | 0 | 0 | 0 |
| ...............................................................ATTTGTTTATATGGA............................................................................................................................................................................ | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 |
| ............................................................................GAGAAAGTTGTGGAG............................................................................................................................................................... | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 |
| ..............................................................TTTTTGTTTACATGGAGA.......................................................................................................................................................................... | 18 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 |
Generated: 04/24/2015 at 10:24 AM