ID:

dsi_4318

 Coordinate:

3l:5500968-5501117 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.6 -18.1 -17.9

Flybase annnotation

CDS [3l_5501118_5501202_-]; exon [3l_5501118_5501264_-]; intron [3l_5500369_5501117_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCTCCTGGTCATCCAGGCCCGGAGTGATCTAGCCGATGACCAAGAACACGGTAAGTGGAACCGAACGGCATTACGAGGTGAACTGCCGAACGAATCCGATTGGCCGAGACCCAGCTTATCTACAGCCAATTGAAAAGCTCCCTCGCCTTATCGTAGATCTTGTTGGCCCATTAGACTTGGCTAATCTAGACCTATTTTAAACAGCATTCAGTCATCGTGTAGCTATATAATAGTTTACGACTCAATTGTT
**********************************************************************...(((((.((.((............((((((((..(((.........)))...))))))))...)).)))))))..******************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M053
female body
 SRR553488
RT_0-2 hours eggs
 M024
male body		 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
.........................GATCTAGCCGATGACCAAGAACACGCCC..................................................................................................................................................................................................... 28 3 1 4.00 4 4 0 0 0 0 0 0 0 0 0
.........................GATCTAGCCGATGACCAAGAACACGCC...................................................................................................................................................................................................... 27 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......................GTGATCTAGCCGATGACCAAG.............................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................TGAAAAGCTCCCTCGCC....................................................................................................... 17 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.......GTCATCCAGGCCCGGAGT................................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......GTCATCCAGGCCCGGAGTG................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................GAAAAGCCCCCTCGCCGTA.................................................................................................... 19 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........CATCCAGGCCCGGAGTGAT.............................................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................AGTGAAAAGCTCCCTCGCCG...................................................................................................... 20 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................GATCTAGCCGATGACCAAGAACA.......................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................TTACGAGGTGAACTGCCGA................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.........CATCCAGGCCCGGAGTGATCTAGCCG....................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......GTCATCCAGGCCCGGAGTGATCTAGCC........................................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................AAAAGCCCCCTCGCCGTA.................................................................................................... 18 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0
.................................CGATGACCAAGAACACGCC...................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0
..................................GATGACCAAGAACACGCC...................................................................................................................................................................................................... 18 2 9 0.33 3 1 0 0 2 0 0 0 0 0 0
.................................................................................................................................GTGAAAAGCCCCCTCGCCGTA.................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................GAAAAGCTCCCTCGCCGA..................................................................................................... 18 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................GAAAAGCCCCCTCGCCGT..................................................................................................... 18 2 6 0.17 1 0 0 1 0 0 0 0 0 0 0
..........ATCCAGGCCTGGAGT................................................................................................................................................................................................................................. 15 1 7 0.14 1 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................AAAAGCTCCCTCGCCGAA.................................................................................................... 18 2 8 0.13 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................GATAAGCCCCCTCGCCGTA.................................................................................................... 19 3 9 0.11 1 0 0 1 0 0 0 0 0 0 0
.....................GAGTGATCCAGTCGTTGAC.................................................................................................................................................................................................................. 19 3 11 0.09 1 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................TTTTAAACAGCACTCAGACT.................................... 20 3 13 0.08 1 0 0 0 0 0 0 0 0 0 1
................................................................ACGGCATTACAATCTGAAC....................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

AGAGGACCAGTAGGTCCGGGCCTCACTAGATCGGCTACTGGTTCTTGTGCCATTCACCTTGGCTTGCCGTAATGCTCCACTTGACGGCTTGCTTAGGCTAACCGGCTCTGGGTCGAATAGATGTCGGTTAACTTTTCGAGGGAGCGGAATAGCATCTAGAACAACCGGGTAATCTGAACCGATTAGATCTGGATAAAATTTGTCGTAAGTCAGTAGCACATCGATATATTATCAAATGCTGAGTTAACAA
*******************************************************************************************************...(((((.((.((............((((((((..(((.........)))...))))))))...)).)))))))..********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body
.................................................................................................................................................GGAATAGCATCTAGAACA....................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................CGAGGGAGCGGAATAGCATCT............................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................GGTCGAATTGATGTC............................................................................................................................. 15 1 6 0.83 5 0 0 3 2 0 0
.................................................................................................................................AGCTTTTCGACGAAGCGGAAT.................................................................................................... 21 3 3 0.33 1 0 0 0 0 1 0
...............................CGGCAACTGGTTCGTGTG......................................................................................................................................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0
....................................AGTGGTTCTTATGCCAATC................................................................................................................................................................................................... 19 3 10 0.10 1 1 0 0 0 0 0
.............................................................................................................GGGTCGATTCGATGTCGGTG......................................................................................................................... 20 3 11 0.09 1 0 0 0 1 0 0
..............................................................................................................GGTCGAATTGATGTCAATTA........................................................................................................................ 20 3 14 0.07 1 0 0 0 0 0 1
........................ACTCGATCGGCTCCTGG................................................................................................................................................................................................................. 17 2 19 0.05 1 1 0 0 0 0 0
.............................................................................................................GGGTCGACTCGATGTCG............................................................................................................................ 17 2 19 0.05 1 0 0 0 1 0 0
...................................................................................................................AATCGATGTGGGTTAAC...................................................................................................................... 17 2 19 0.05 1 1 0 0 0 0 0
...................................................................................................................CATAGATGTGGGTTAAC...................................................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0
.............................................................................................................CGGTCGAATTGATGTC............................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0
..........................................................................................................................................AGTGAGGGGAATAGCA................................................................................................ 16 2 20 0.05 1 0 0 0 0 1 0
....................................................................................................................................................................................................AATTTGTCGTAAGGC....................................... 15 1 20 0.05 1 0 0 0 1 0 0
..AGGACCAGTAGGTCG......................................................................................................................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:5500918-5501167 - dsi_4318 TCTCCTGGTCAT------CC------AGGCCCGGAGTGATCTAGCCGATGACCAAGAACACGGTAAGTGGAACCGAACGGC---------------------------ATTACGAGGTGAACTGCC-GAACGAATCCGA-------------TTGGCC--GAGA-C---CCA------------GCTTATCTACAGCCAATTGAAA-AGCT-----CCCTCGCCTTATCGT-------AGATCTTGT-TGG----CCCATTAGACTTGG---CTAATCT-AGACCTATTTT-AAA-CAGCATTCAGTCATCGTGT--AGCTATATAATAGTTTACGA-CTCAATTG-------TT
droSec2 scaffold_2:5524412-5524663 - TCTCCTGGTCAT------CC------AGGCCCGGAGTGATCTAGCCGATGACCAAGAGCACGGTAAGTGGAACCGAACGGC---------------------------ATTACGAGGTGAACTGCC-GAACGAATCCGA-------------TTGGCC--GAGA-C---CCA------------GCTTATCTACAGCCAATTGAAA-AGCT-----CTCTCGCCTTATCGT-------AGATCTTGT-TGG----CCCATTAGACTTGG---CTAATCT-AGACCTTTTTTTAAA-CAGCATTCAGTCATCGTGT--AGCTATATAATAGTTTACGACTTCAATTG-------TT
dm3 chr3L:5588022-5588275 - TCTCCTGGTCAT------CC------AGGCCCGGAGTGATCTAGCCGATGACCAAGAGCACGGTAAGTGGAACCGAACGGC---------------------------ATTGCGTGGTGAACTGCC-GAACGAATCCGA-------------TTGGCC--GCGA-C---CCA------------GCTTATCTACAGCCAATTGAAA-AGCT-----CTCTCGGCTTATCGT---AGAGAGATCTTGA-TGG----CCAATTAGACTTGG---CTAATCT-AGATCTATTTT-AAA-CAGCACTCAGTCATCGACT--AGCTATATAATAGTTTACGA-CTCAATTG-------TT
droEre2 scaffold_4784:8274715-8274965 - TCTCCTGGTCGT------CC------AGGCTCGGAGTGATCTAGCCGATGACCAAGAACACGGTAAGTGGAACCGAACGGT---------------------------ATTACGAGGTGAACTGCC-GAACGAATCCGA-------------TTGGCC--AAGA-C---CCA------------GCTTATCTACAGCCAACTGGAA-AGCT-----CTCTCGTCGTATCGC-------CTATTCGACTTAG----TCTATTCGACTTGG---CTAATCT-AGAGCTATTTT-AAA-AAGCATTCAGTCATCGAGT--AGCTGCATAATAGTTTATGA-CTGAACTG-------TT
droYak3 3L:6153039-6153282 - TCTCCTGGTCAT------CC------AGGTTCGGAGTGATCCAGCCGATGACCAAGAACAAGGTAAGTGCAGCCGATTGGT---------------------------TTTACGAGCTCAACTGCC-GAACGAATCTGA-------------TTGGCC--AAGA-G---CCA------------GCTTATCTACAGCCAATGGGAA-AGCT-----CGCTCGTCTTATCGC-------AGATCTTGT-TGG----CCTATTCGACTTGG---CTAATCT-AAACCTATTTT-TA-------GTCAGTCATCAAGT--AACTACATAATAGTTTATGA-CTCTATTG-------AT
droEug1 scf7180000409466:3353667-3353927 - TCTCCTGTTCAT------CC------AGGTTCAGTGTGATCTGACCGATGACCAAGAACATGGTAAGTGGAACCGAATAAC--------GAAGCC-----GA-----TATAACGAAGAGCTCACCC-GAACGAATCCGA-------------TTTGTC--GAGA-A--CCCG------------GCTTATCTACAGCCAATTGAAATGGCC-----CACTCGCCTTATCGC-------AAATCTTGT-TAG----CTCATTAGACTTGG---CTAATCT-AGATCTATTTT-TAA-AAGGTTTCAGTCATCGACG--AGCTATATTATGATTTACGA-ACCATTTG-------TT
droBia1 scf7180000302193:3081797-3082045 - CCTCCTGTTCAT------CC------AGGTTCGGAGCGATCTAGCCGACGACCAAGAACATGGTAAGTGGAACCGAACGCT---------------------------ATTGCGAAAAGAGCTCCC-GAACGAATCCGA-------------TTTGTC--GGGC-C---CCA------------GCTTATCTGCAGCCAATTGAAGAAGCC-----CATTAGCCCTATCGC-------AAGCCTTGT-TTG----CCTAATAGAATTTG---CTAATCC-ACATCTATTTT-TAA-AAAGCTTCAGTCATCGACA--AGCTA--TAATGATTATCAG-TTCAGTTG-------TT
droTak1 scf7180000415868:267579-267809 - TCTCCTGTTCGT------CC------AGGTTCGGAGTGATCTGGCCGATGAGCAAGAACATGGTAAGTGGAACCGAACCGA------A-------------------GATTGCGAAGAGAGCAGCC-GAACGAATCCGA-------------TTTGTT--GGGA-C--CCCA------------GCTTATCTACGGCCAATTGAAAGAGCC-----------------------------------T-TAG----CTCATTATAATAGG---CTAATCT-ATATTTATTTT-TGA-AAAGGTTCAGTCATCGACG--AGCTATACTATGATTACAAG-TTCATTTG-------TT
droEle1 scf7180000491268:1068564-1068816 - TCTCCTGTTCAT------CC------AGGTTCGGAGTGAACTAACCGATGACCGAGAAAATGGTAAGTGTTGCCGAAAGAA---------------------------AATACGAAGGGAGCCCCCTTAACCAATCGTA-------------TTCGTT--TGGG-C-TCCAA------------CCTTATCTACAGCCAATTGAAAAAACC-----CACCTGCCTTATCGC-------AAATCTTGT-GGC----TTTATTAGACTGGG---CTAATCT-ATATCTACATATATA-TGTTAGGTTATCATCGAAA--AGGT--AATATGATTTACGA-TTCATTCG-------TT
droRho1 scf7180000779528:196179-196428 - TCTCCTGTTCAT------CC------AGGTCCGGAGTGAACTTACCGATGACCAAGAAAATGGTAAGTGTTACCGAAACAT---------------------------ATTACGAAGAGAGCA-CC-GAACGAATCCGA-------------TTCGTT--TGGA-C-CCCCA------------CCTTATCTACAGCCAATTGAAATAGCC-----CACCCATCTTATCGC-------AAATCTTGT-CAC----TTTATTAGACTCTG---CTAATCT-AAATCTATTTT-TGA-AAGGGTTCAGTCATTCAAG--AGCTA--TTATGATTTACGA-TTCATTTG-------TT
droFic1 scf7180000453841:141729-141990 + TCTACTGTTCCT------CC------AAGTTCGGAGTGATCTGGCCGATGAGCAAGAACATGGTAAGTGGAACCGAAAGGT--------GCTGCG-------------AATAAGAAAAGAGCACCC-GAACGAATCCGA-------------TTCGTT--TAGGGC-CCCAA------------GCTTATCTTTGGCCAATAGGAAGAGCC-----CACTTTGCTTATCAA-------AACTCTTAT-TAGTTCTCTCATTTGACTTGG---CTAATCT-AGATCTATTTT-TGT-AAGCGTTCAGTCAATGACG--AGTCA--TTTCGATTTACGA-CCCTGTTG-------TT
droKik1 scf7180000302266:256854-257129 - TCTCCTGTTCCT------CC------GGGTTCGGGGTGACTTGGCCGACCAACAGGAAAAAGGTGAGTGGC---------T--------ATTACGAATTCGAAACCCGATTCCGCAGAGAGAGCTC-CAACGAATGGGA-------------ATCGTCTTGGAG-CTCCCTG------------GCTTATCTATGGCCAATAGCAAGAGCTGGAGCCTCTGGGCTTATCGC-------AAATCTTGT-TAA----CTCATTAAGCTTGCGGCCTAATCT-AGATCTATTTT-TGA-AAAGGTTTAGTCATGGGCGGAGGGTACAATATAATTTATGA-TTTGAGTG-------TT
droAna3 scaffold_13337:12961919-12962167 + ACTCCTGGTTAT------CC------AGGTTCGAGGTGACCTGGCCGACGAGCAGGAAAATGGTGAGTAG--CTAATCAG------------------------------AACGAAGTGATCACCC-GATCGAATCCGA-------------TTCGTC--GAGA-C--TCCG------------GCTTATCTTCAGCCAATTGAAAATGGT-------CATGGGTTATCAA-------AAATCTCAT-AAA----CTCATTAGACCGGA---CTAATCT-TGATATATTTA-TAA-ACCAGTTCGACAATTGGAG--AGTTGT---ATATTTTATGA-TTTAATTTAATCTTTTT
droBip1 scf7180000396589:1070141-1070382 - ACTCCTGGCTAT------TC------AGGTGCGAGGTGACCTATCCGACGACCAGGAAAATGGTGAGTAG--CTAATC------------------------------ACAACGAAGTGGTAACCC-GATCGAATCCGA-------------TTTGTG--GAGG-C--TCCG------------GCTTATCTCCAGCCAATGGGAAG--CA-----GCCATGGGTTATCAA-------AAATCTTGT-TAG----CTCATTAGGCCCAA---CTAATCT-TGATATATTTA-TAA-ACCAGTACGTCAGTTTAAG--AG---TTTTATAAATTATGG-TACATTTT-------AA
dp5 XR_group6:8050955-8051212 + CCTCG--GCGAT------CCCACCCAAAGTACGGGCCGGGCTATCCGAAGAGCAGGAGAATGGTAAGTGCCACCGTTCGTACGTTAAAC-------------------GTTACGA--------ACC-GAAAGAAATCGGTCGTCAACGATCATTCGTT--GAAAAC-C-CCAAAACGCGCACACTCCTATCTACGACCAATAGAAA-ACCA-ATGCC--C--CGCGATTGTGTTTTTGAAATCTTGT-TCG----CCCATTAAGATCGGAATCTTATCTGAAATCTAATTT-TGAGTTACTTTCAAAC-------------------------------------G--------T
droPer2 scaffold_27:405964-406203 - CCTCG--GCGAT------CCCACCCAAAGTACGGGCCGGGCTATCCGAAGAGCAGGAGAATGGTAAGTGGCACCGTTCGTACGTTAAAC-------------------GTTACGAA--------CC-GAAAGCAATCGGTCGTCAACGATCATTCGTT--GAAAAC-C-CCAAAACGCGCATACTCCTATCTACGACCAATAGAAA-ACCA-ATGCC--C--CGCGATTGTGTATCTGAAATCTTGT-TCG----CTTATTAAGATCGGAATCTTATCTGAAATCTATTTT----------------------------------------------------------------
droVir3 scaffold_13049:11525546-11525607 - CCTGGCTCTGATGACGTGCC------CGGCCTGGGCAGATTTATCCGACGAGCAAGAGAATGGTGAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6680:9300639-9300702 + TCTCGCTCTGGTGACGTGTCC-----AG-CCAGAGCAGATCTGTCCGATGAGCAGGAGAATGGTGAGTAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCTCCTGGTCAT------CC------AGGCCCGGAGTGATCTAGCCGATGACCAAGAACACGGTAAGTGGAACCGAACGGC---------------------------ATTACGAGGTGAACTGCC-GAACGAATCCGA-------------TTGGCC--GAGA-C---CCA------------GCTTATCTACAGCCAATTGAAA-AGCT-----CCCTCGCCTTATCGT-------AGATCTTGT-TGG----CCCATTAGACTTGG---CTAATCT-AGACCTATTTT-AAA-CAGCATTCAGTCATCGTGT--AGCTATATAATAGTTTACGA-CTCAATTG-------TTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................GATCTAGCCGATGACCAAGAACACGCCC..................................................................................................................................................................................................................................................................................................2814.00400400000000000000
.....................................GATCTAGCCGATGACCAAGAACACGCC...................................................................................................................................................................................................................................................................................................2711.00101000000000000000
...................................GTGATCTAGCCGATGACCAAG...........................................................................................................................................................................................................................................................................................................2111.00100010000000000000
.........................................................................................................................................................................................................TGAAA-AGCT-----CCCTCGCC...................................................................................................................................1711.00100000000100000000
.......GTCAT------CC------AGGCCCGGAGT..............................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.......GTCAT------CC------AGGCCCGGAGTG.............................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
.........CAT------CC------AGGCCCGGAGTGAT...........................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
.....................................GATCTAGCCGATGACCAAGAACA.......................................................................................................................................................................................................................................................................................................2311.00100010000000000000
.............................................................................................................TTACGAGGTGAACTGCC-GA..................................................................................................................................................................................................................................1911.00100001000000000000
.........CAT------CC------AGGCCCGGAGTGATCTAGCCG....................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
.......GTCAT------CC------AGGCCCGGAGTGATCTAGCC.....................................................................................................................................................................................................................................................................................................................2711.00100000000000100000
.............................................CGATGACCAAGAACACGCC...................................................................................................................................................................................................................................................................................................1930.33100100000000000000
..............................................GATGACCAAGAACACGCC...................................................................................................................................................................................................................................................................................................1890.33302100000000000000
..........................................................................................................................................................................................................GAAA-AGCT-----CCCTCGCCGA.................................................................................................................................1850.20100000000010000000
droSec2
TCTCCTGGTCAT------CC------AGGCCCGGAGTGATCTAGCCGATGACCAAGAGCACGGTAAGTGGAACCGAACGGC---------------------------ATTACGAGGTGAACTGCC-GAACGAATCCGA-------------TTGGCC--GAGA-C---CCA------------GCTTATCTACAGCCAATTGAAA-AGCT-----CTCTCGCCTTATCGT-------AGATCTTGT-TGG----CCCATTAGACTTGG---CTAATCT-AGACCTTTTTTTAAA-CAGCATTCAGTCATCGTGT--AGCTATATAATAGTTTACGACTTCAATTG-------TTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......GTCAT------CC------AGGCCCGGAGTG.............................................................................................................................................................................................................................................................................................................................1917.0072050
.......GTCAT------CC------AGGCCCGGAGTGATCTAGC......................................................................................................................................................................................................................................................................................................................2614.0040130
.......GTCAT------CC------AGGCCCGGAGTGATCTAGCC.....................................................................................................................................................................................................................................................................................................................2714.0040130
.........CAT------CC------AGGCCCGGAGTGATCTAGCC.....................................................................................................................................................................................................................................................................................................................2514.0041030
..........................AGGCCCGGAGTGATCTAGC......................................................................................................................................................................................................................................................................................................................1912.0020020
.............................CCCGGAGTGATCTAGCCG....................................................................................................................................................................................................................................................................................................................1812.0020020
.....................................GATCTAGCCGATGACCAAGAGCACGCC...................................................................................................................................................................................................................................................................................................2712.0020110
.........CAT------CC------AGGCCCGGAGTGATCT.........................................................................................................................................................................................................................................................................................................................2112.0020020
...........................GGCCCGGAGTGATCTAGCC.....................................................................................................................................................................................................................................................................................................................1912.0020020
...........................GGCCCGGAGTGATCTAGCCG....................................................................................................................................................................................................................................................................................................................2012.0020020
............................GCCCGGAGTGATCTAGCC.....................................................................................................................................................................................................................................................................................................................1811.0010010
.........CAT------CC------AGGCCCGGAGTGATCTAGCCGA...................................................................................................................................................................................................................................................................................................................2711.0010010
..........AT------CC------AGGCCCGGAGTGATCT.........................................................................................................................................................................................................................................................................................................................2011.0010100
..................................AGTGATCTAGCCGATGACCAAGA..........................................................................................................................................................................................................................................................................................................2311.0010010
......................................ATCTAGCCGATGACCAAGA..........................................................................................................................................................................................................................................................................................................1911.0010010
...............................................ATGACCAAGAGCACGGTA..................................................................................................................................................................................................................................................................................................1811.0010010
.....................................GATCTAGCCGATGACCAAGAGC........................................................................................................................................................................................................................................................................................................2211.0010100
............................GCCCGGAGTGATCTAGCCG....................................................................................................................................................................................................................................................................................................................1911.0010010
.....................................GATCTAGCCGATGACCAAGA..........................................................................................................................................................................................................................................................................................................2011.0010010
...................................GTGATCTAGCCGATGACCAAGA..........................................................................................................................................................................................................................................................................................................2211.0011000
......................................ATCTAGCCGATGACCAAGAGC........................................................................................................................................................................................................................................................................................................2111.0010010
...........................GGCCCGGAGTGATCTAGC......................................................................................................................................................................................................................................................................................................................1811.0010010
.......................................TCTAGCCGATGACCAAGA..........................................................................................................................................................................................................................................................................................................1811.0010010
.............................CCCGGAGTGATCTAGCCGA...................................................................................................................................................................................................................................................................................................................1911.0010010
..........................AGGCCCGGAGTGATCTAGCCG....................................................................................................................................................................................................................................................................................................................2111.0010010
.........................................................GCACGGTAAGTGGAACCG........................................................................................................................................................................................................................................................................................1811.0011000
..........................................AGCCGATGACCAAGAGCA.......................................................................................................................................................................................................................................................................................................1811.0010010
.......GTCAT------CC------AGGCCCGGAGTGATCTAGCCG....................................................................................................................................................................................................................................................................................................................2811.0011000
.......GTCAT------CC------AGGCCCGGAGT..............................................................................................................................................................................................................................................................................................................................1811.0010010
.....................................GATCTAGCCGATGACCAAGAGCACGC....................................................................................................................................................................................................................................................................................................2611.0010100
...........................GGCCCGGAGTGATCTAGCCGA...................................................................................................................................................................................................................................................................................................................2111.0010010
.........CAT------CC------AGGCCCGGAGTGATCTA........................................................................................................................................................................................................................................................................................................................2211.0010010
.........CAT------CC------AGGCCCGGAGTGATCTAGC......................................................................................................................................................................................................................................................................................................................2411.0010010
................................GGAGTGATCTAGCCGATGACC..............................................................................................................................................................................................................................................................................................................2111.0010010
.........................................................GCACGGTAAGTGGAACCGAACGGC---------------------------A......................................................................................................................................................................................................................................................2511.0010100
.....................................GATCTAGCCGATGACCAAGAGCAC......................................................................................................................................................................................................................................................................................................2411.0010100
...........................................GCCGATGACCAAGAGCACGCC...................................................................................................................................................................................................................................................................................................2111.0010100
...........T------CC------AGGCCCGGAGTGATCT.........................................................................................................................................................................................................................................................................................................................1911.0010010
dm3
TCTCCTGGTCAT------CC------AGGCCCGGAGTGATCTAGCCGATGACCAAGAGCACGGTAAGTGGAACCGAACGGC---------------------------ATTGCGTGGTGAACTGCC-GAACGAATCCGA-------------TTGGCC--GCGA-C---CCA------------GCTTATCTACAGCCAATTGAAA-AGCT-----CTCTCGGCTTATCGT---AGAGAGATCTTGA-TGG----CCAATTAGACTTGG---CTAATCT-AGATCTATTTT-AAA-CAGCACTCAGTCATCGACT--AGCTATATAATAGTTTACGA-CTCAATTG-------TTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................AGCCGATGACCAAGAGCACG.....................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................GTAAGTGGAACCGAACGGA---------------------------TC.....................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GGCCCGGAGTGATCTAGCCGAT..................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GAGTGATCTAGCCGATGACC..............................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................T-AAA-CAGCACTCAGTCATCGAC.........................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................GATCTAGCCGATGACCAA............................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GCCCGGAGTGATCTAGCC.....................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CC------AGGCCCGGAGTGATCT.........................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GAGTGATCTAGCCGATGA................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................GC---------------------------ATTGCGTGGTGAACTGCC-....................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GGCCCGGAGTGATCTAGC......................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................CTAGCCGATGACCAAGAGCACGCCC..................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
............................GCCCGGAGTGATCTAGCCGAT..................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................AGCCAATTGAAA-AGCT-----CTCTAC.....................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CAT------CC------AGGCCCGGAGTGATCT.........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........AT------CC------AGGCCCGGAGTGATCT.........................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................................AGCCGATGACCAAGAGCAC......................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TCTCGGCTTATCGT---AGAGAGA..................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GTCAT------CC------AGGCCCGGAGTGATCTAGC......................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................AGGCCCGGAGTGATCTAGC......................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................................................................................CGTGGTGAACTGCC-GAAC................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................TGGAACCGAACGGC---------------------------ATTGCGT................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CAT------CC------AGGCCCGGAGTGATCTA........................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CC------AGGCCCGGAGTGATCTAGCCG....................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........................................................................AACGGC---------------------------ATTGCGTGGTGAAC.........................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TCTAGCCGATGACCAAGAG.........................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................TCTAGCCGATGACCAAGAGC........................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........AT------CC------AGGCCCGGAGTGATCTAGCCGAT..................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GTCAT------CC------AGGCCCGGAGTGATCTAGCCGAT..................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CCCGGAGTGATCTAGCCGATGACC..............................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................ATCTAGCCGATGACCAAG...........................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................GCTTATCGT---AGAGAGATCTTGA-T..........................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................GTGATCTAGCCGATGACC..............................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................ATCTAGCCGATGACCAAGAGCACGCC...................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................................CTAGCCGATGACCAAGAGCACGC....................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........................GGCCCGGAGTGATCTAGCC.....................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................GTAAGTGGAACCGAACCT...................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
droEre2
TCTCCTGGTCGT------CC------AGGCTCGGAGTGATCTAGCCGATGACCAAGAACACGGTAAGTGGAACCGAACGGT---------------------------ATTACGAGGTGAACTGCC-GAACGAATCCGA-------------TTGGCC--AAGA-C---CCA------------GCTTATCTACAGCCAACTGGAA-AGCT-----CTCTCGTCGTATCGC-------CTATTCGACTTAG----TCTATTCGACTTGG---CTAATCT-AGAGCTATTTT-AAA-AAGCATTCAGTCATCGAGT--AGCTGCATAATAGTTTATGA-CTGAACTG-------TTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......GTCGT------CC------AGGCTCGGAGTG.............................................................................................................................................................................................................................................................................................................................1915.0052100020
......GGTCGT------CC------AGGCTCGGAGTG.............................................................................................................................................................................................................................................................................................................................2014.0041002010
......GGTCGT------CC------AGGCTCGGAGT..............................................................................................................................................................................................................................................................................................................................1914.0040001120
.......GTCGT------CC------AGGCTCGGAGTGATCTAGC......................................................................................................................................................................................................................................................................................................................2613.0031100010
...........T------CC------AGGCTCGGAGTGATCTAGC......................................................................................................................................................................................................................................................................................................................2212.0020101000
......................................ATCTAGCCGATGACCAAGA..........................................................................................................................................................................................................................................................................................................1912.0020011000
.....................................GATCTAGCCGATGACCAAG...........................................................................................................................................................................................................................................................................................................1912.0020001010
......................................ATCTAGCCGATGACCAAGAACACGCC...................................................................................................................................................................................................................................................................................................2612.0020200000
.......GTCGT------CC------AGGCTCGGAGT..............................................................................................................................................................................................................................................................................................................................1811.0010000010
..........GT------CC------AGGCTCGGAGTGATCTAGC......................................................................................................................................................................................................................................................................................................................2311.0010000010
...............................................................................................................................................................................................................AGCT-----CTCTCGTCGTATCGC-------CTATT................................................................................................................2411.0010000010
...............................................................................................................................GAACGAATCCGA-------------TTGGCC--AAGA-C---CCA------------G..........................................................................................................................................................................2711.0010000010
...........................................GCCGATGACCAAGAACACGCC...................................................................................................................................................................................................................................................................................................2111.0011000000
................................GGAGTGATCTAGCCGATGACCAAGAACAC......................................................................................................................................................................................................................................................................................................2911.0010100000
..........GT------CC------AGGCTCGGAGTGATCTAGA......................................................................................................................................................................................................................................................................................................................2311.0010001000
.......GTCGT------CC------AGGCTCGGAGTGATCT.........................................................................................................................................................................................................................................................................................................................2311.0011000000
........TCGT------CC------AGGCTCGGAGTGATCTA........................................................................................................................................................................................................................................................................................................................2311.0011000000
............................GCTCGGAGTGATCTAGCCGATGACC..............................................................................................................................................................................................................................................................................................................2511.0010001000
.........CGT------CC------AGGCTCGGAGTGATCTAGCCGAT..................................................................................................................................................................................................................................................................................................................2811.0010000100
..................CC------AGGCTCGGAGTGATCTA........................................................................................................................................................................................................................................................................................................................1911.0010100000
...............................................................................................................................................................................................................................................................TCTATTCGACTTGG---CTAATCT-AGAGCT.....................................................................2711.0010100000
.....................................GATCTAGCCGATGACCAAGAACACGCAC..................................................................................................................................................................................................................................................................................................2811.0010100000
......................................ATCTAGCCGATGACCAAG...........................................................................................................................................................................................................................................................................................................1811.0010000010
................................GGAGTGATCTAGCCGATGACCAAG...........................................................................................................................................................................................................................................................................................................2411.0011000000
..........GT------CC------AGGCTCGGAGTGATCTAGCC.....................................................................................................................................................................................................................................................................................................................2411.0010001000
.........................................................................................................................CTGCC-GAACGAATCCGA-------------TTG........................................................................................................................................................................................................2011.0010000100
droYak3
TCTCCTGGTCAT------CC------AGGTTCGGAGTGATCCAGCCGATGACCAAGAACAAGGTAAGTGCAGCCGATTGGT---------------------------TTTACGAGCTCAACTGCC-GAACGAATCTGA-------------TTGGCC--AAGA-G---CCA------------GCTTATCTACAGCCAATGGGAA-AGCT-----CGCTCGTCTTATCGC-------AGATCTTGT-TGG----CCTATTCGACTTGG---CTAATCT-AAACCTATTTT-TA-------GTCAGTCATCAAGT--AACTACATAATAGTTTATGA-CTCTATTG-------ATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......GGTCAT------CC------AGGTTCGGAGT..............................................................................................................................................................................................................................................................................................................................19112.0012000000120000
.......GTCAT------CC------AGGTTCGGAGTG.............................................................................................................................................................................................................................................................................................................................1917.00707000000000
.......GTCAT------CC------AGGTTCGGAGT..............................................................................................................................................................................................................................................................................................................................1814.00402020000000
.CTCCTGGTCAT------CC------AGGTTCGGAGT..............................................................................................................................................................................................................................................................................................................................2412.00201000010000
.........CAT------CC------AGGTTCGGAGTGATCCAGCCGAT..................................................................................................................................................................................................................................................................................................................2812.00200000020000
............................GTTCGGAGTGATCCAGCCGAT..................................................................................................................................................................................................................................................................................................................2112.00200000020000
.........CAT------CC------AGGTTCGGAGTGATCCAGC......................................................................................................................................................................................................................................................................................................................2412.00200100010000
.....................................GATCCAGCCGATGACCAAGAA.........................................................................................................................................................................................................................................................................................................2112.00201100000000
......................................ATCCAGCCGATGACCAAGAACAAGCC...................................................................................................................................................................................................................................................................................................2612.00220000000000
............................................................................................................................................................................................ATCTACAGCCAATGGGAA-AGC.................................................................................................................................................2111.00100100000000
......GGTCAT------CC------AGGTTCGGAGC..............................................................................................................................................................................................................................................................................................................................1911.00100100000000
.......GTCAT------CC------AGGTTCGGAGTGATC..........................................................................................................................................................................................................................................................................................................................2211.00100000010000
...........T------CC------AGGTTCGGAGTGATCCAGCC.....................................................................................................................................................................................................................................................................................................................2311.00100000010000
.CTCCTGGTCAT------CC------AGGTTCGG.................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.....................................................................................................................................ATCTGA-------------TTGGCC--AAGA-G---CCA------------GC.........................................................................................................................................................................2211.00100000100000
........TCAT------CC------AGGTTCGGAGTG.............................................................................................................................................................................................................................................................................................................................1811.00101000000000
...........................................................................................................................................................................................TATCTACAGCCAATGGGAA-AGCT-----...........................................................................................................................................2311.00100000010000
.................................................................................................................................ACGAATCTGA-------------TTGGCC--AAGA-G---CCA------------GC.........................................................................................................................................................................2611.00100000010000
........................................CCAGCCGATGACCAAGAAC........................................................................................................................................................................................................................................................................................................1911.00100100000000
.........................................................ACAAGGTAAGTGCAGCCGATTGGT---------------------------.......................................................................................................................................................................................................................................................2411.00100000010000
..........AT------CC------AGGTTCGGAGTGATCCA........................................................................................................................................................................................................................................................................................................................2111.00100000010000
.........CAT------CC------AGGTTCGGAGTGATCCAGCCG....................................................................................................................................................................................................................................................................................................................2611.00100000010000
...........T------CC------AGGTTCGGAGTGATCCAGC......................................................................................................................................................................................................................................................................................................................2211.00101000000000
.....................................GATCCAGCCGATGACCAAGAACA.......................................................................................................................................................................................................................................................................................................2311.00100000010000
...........................................................................................................................................................................................TATCTACAGCCAATGGGAA-AGCT-----CGCT.......................................................................................................................................2711.00100000010000
..........AT------CC------AGGTTCGGAGTGATCCAGCC.....................................................................................................................................................................................................................................................................................................................2411.00100000010000
..........AT------CC------AGGTTCGGAGTGATCC.........................................................................................................................................................................................................................................................................................................................2011.00100000010000
.CTCCTGGTCAT------CC------AGGTTCGGAGTG.............................................................................................................................................................................................................................................................................................................................2511.00100000010000
..........AT------CC------AGGTTCGGAGTGATCCAGC......................................................................................................................................................................................................................................................................................................................2311.00101000000000
..........................................AGCCGATGACCAAGAACAAGCCC..................................................................................................................................................................................................................................................................................................2311.00100100000000
.......GTCAT------CC------AGGTTCGGAGTGAT...........................................................................................................................................................................................................................................................................................................................2111.00100000010000
.....................................GATCCAGCCGATGACCAAG...........................................................................................................................................................................................................................................................................................................1911.00100000010000
.......GTCAT------CC------AGGTTCGGAGTGATCCAGC......................................................................................................................................................................................................................................................................................................................2611.00101000000000
...............................................................................................................................GAACGAATCTGA-------------TTGGCC--AAGA-G---C.........................................................................................................................................................................................2411.00100000010000
TCTCCTGGTCAT------CC------AGGTTCGGAGT..............................................................................................................................................................................................................................................................................................................................2511.00100000010000
.....................................GATCCAGCCGATGACCAAGAAC........................................................................................................................................................................................................................................................................................................2211.00100100000000
.........CAT------CC------AGGTTCGGAGTGATCC.........................................................................................................................................................................................................................................................................................................................2111.00101000000000
........TCAT------CC------AGGTTCGGAGTGATCC.........................................................................................................................................................................................................................................................................................................................2211.00101000000000
.........CAT------CC------AGGTTCGGAGTGATCCAGCC.....................................................................................................................................................................................................................................................................................................................2511.00100000010000
.....................................GATCCAGCCGATGACCAAGA..........................................................................................................................................................................................................................................................................................................2011.00100010000000
...............................CGGAGTGATCCAGCCGATGACCAA............................................................................................................................................................................................................................................................................................................2411.00101000000000
droEug1
TCTCCTGTTCAT------CC------AGGTTCAGTGTGATCTGACCGATGACCAAGAACATGGTAAGTGGAACCGAATAAC--------GAAGCC-----GA-----TATAACGAAGAGCTCACCC-GAACGAATCCGA-------------TTTGTC--GAGA-A--CCCG------------GCTTATCTACAGCCAATTGAAATGGCC-----CACTCGCCTTATCGC-------AAATCTTGT-TAG----CTCATTAGACTTGG---CTAATCT-AGATCTATTTT-TAA-AAGGTTTCAGTCATCGACG--AGCTATATTATGATTTACGA-ACCATTTG-------TTSizeHit CountTotal NormTotal
No Reads
droBia1
CCTCCTGTTCAT------CC------AGGTTCGGAGCGATCTAGCCGACGACCAAGAACATGGTAAGTGGAACCGAACGCT---------------------------ATTGCGAAAAGAGCTCCC-GAACGAATCCGA-------------TTTGTC--GGGC-C---CCA------------GCTTATCTGCAGCCAATTGAAGAAGCC-----CATTAGCCCTATCGC-------AAGCCTTGT-TTG----CCTAATAGAATTTG---CTAATCC-ACATCTATTTT-TAA-AAAGCTTCAGTCATCGACA--AGCTA--TAATGATTATCAG-TTCAGTTG-------TTSizeHit CountTotal NormTotal
No Reads
droTak1
TCTCCTGTTCGT------CC------AGGTTCGGAGTGATCTGGCCGATGAGCAAGAACATGGTAAGTGGAACCGAACCGA------A-------------------GATTGCGAAGAGAGCAGCC-GAACGAATCCGA-------------TTTGTT--GGGA-C--CCCA------------GCTTATCTACGGCCAATTGAAAGAGCC-----------------------------------T-TAG----CTCATTATAATAGG---CTAATCT-ATATTTATTTT-TGA-AAAGGTTCAGTCATCGACG--AGCTATACTATGATTACAAG-TTCATTTG-------TTSizeHit CountTotal NormTotal
No Reads
droEle1
TCTCCTGTTCAT------CC------AGGTTCGGAGTGAACTAACCGATGACCGAGAAAATGGTAAGTGTTGCCGAAAGAA---------------------------AATACGAAGGGAGCCCCCTTAACCAATCGTA-------------TTCGTT--TGGG-C-TCCAA------------CCTTATCTACAGCCAATTGAAAAAACC-----CACCTGCCTTATCGC-------AAATCTTGT-GGC----TTTATTAGACTGGG---CTAATCT-ATATCTACATATATA-TGTTAGGTTATCATCGAAA--AGGT--AATATGATTTACGA-TTCATTCG-------TTSizeHit CountTotal NormTotal
No Reads
droRho1
TCTCCTGTTCAT------CC------AGGTCCGGAGTGAACTTACCGATGACCAAGAAAATGGTAAGTGTTACCGAAACAT---------------------------ATTACGAAGAGAGCA-CC-GAACGAATCCGA-------------TTCGTT--TGGA-C-CCCCA------------CCTTATCTACAGCCAATTGAAATAGCC-----CACCCATCTTATCGC-------AAATCTTGT-CAC----TTTATTAGACTCTG---CTAATCT-AAATCTATTTT-TGA-AAGGGTTCAGTCATTCAAG--AGCTA--TTATGATTTACGA-TTCATTTG-------TTSizeHit CountTotal NormTotal
No Reads
droFic1
TCTACTGTTCCT------CC------AAGTTCGGAGTGATCTGGCCGATGAGCAAGAACATGGTAAGTGGAACCGAAAGGT--------GCTGCG-------------AATAAGAAAAGAGCACCC-GAACGAATCCGA-------------TTCGTT--TAGGGC-CCCAA------------GCTTATCTTTGGCCAATAGGAAGAGCC-----CACTTTGCTTATCAA-------AACTCTTAT-TAGTTCTCTCATTTGACTTGG---CTAATCT-AGATCTATTTT-TGT-AAGCGTTCAGTCAATGACG--AGTCA--TTTCGATTTACGA-CCCTGTTG-------TTSizeHit CountTotal NormTotal
No Reads
droKik1
TCTCCTGTTCCT------CC------GGGTTCGGGGTGACTTGGCCGACCAACAGGAAAAAGGTGAGTGGC---------T--------ATTACGAATTCGAAACCCGATTCCGCAGAGAGAGCTC-CAACGAATGGGA-------------ATCGTCTTGGAG-CTCCCTG------------GCTTATCTATGGCCAATAGCAAGAGCTGGAGCCTCTGGGCTTATCGC-------AAATCTTGT-TAA----CTCATTAAGCTTGCGGCCTAATCT-AGATCTATTTT-TGA-AAAGGTTTAGTCATGGGCGGAGGGTACAATATAATTTATGA-TTTGAGTG-------TTSizeHit CountTotal NormTotal
No Reads
droAna3
ACTCCTGGTTAT------CC------AGGTTCGAGGTGACCTGGCCGACGAGCAGGAAAATGGTGAGTAG--CTAATCAG------------------------------AACGAAGTGATCACCC-GATCGAATCCGA-------------TTCGTC--GAGA-C--TCCG------------GCTTATCTTCAGCCAATTGAAAATGGT-------CATGGGTTATCAA-------AAATCTCAT-AAA----CTCATTAGACCGGA---CTAATCT-TGATATATTTA-TAA-ACCAGTTCGACAATTGGAG--AGTTGT---ATATTTTATGA-TTTAATTTAATCTTTTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......GGTTAT------CC------AGGTTCGAGGT..............................................................................................................................................................................................................................................................................................................................1914.004201010
............................GTTCGAGGTGACCTGGCCGAC..................................................................................................................................................................................................................................................................................................................2114.004012001
............................GTTCGAGGTGACCTGGCC.....................................................................................................................................................................................................................................................................................................................1814.004031000
.......GTTAT------CC------AGGTTCGAGGTGACCTGGCC.....................................................................................................................................................................................................................................................................................................................2713.003030000
............................GTTCGAGGTGACCTGGCCGACGAGC..............................................................................................................................................................................................................................................................................................................2513.003120000
...........................GGTTCGAGGTGACCTGGCC.....................................................................................................................................................................................................................................................................................................................1912.002020000
.CTCCTGGTTAT------CC------AGGTTCGAGGT..............................................................................................................................................................................................................................................................................................................................2411.001000010
.......GTTAT------CC------AGGTTCGAGGT..............................................................................................................................................................................................................................................................................................................................1811.001000100
.........TAT------CC------AGGTTCGAGGTGACCT.........................................................................................................................................................................................................................................................................................................................2111.001001000
.........TAT------CC------AGGTTCGAGGTGAC...........................................................................................................................................................................................................................................................................................................................1911.001010000
...................................GTGACCTGGCCGACGAGCAGGA..........................................................................................................................................................................................................................................................................................................2211.001000010
...............................CGAGGTGACCTGGCCGACGAGCA.............................................................................................................................................................................................................................................................................................................2311.001001000
..................................................................GTAG--CTAATCAG------------------------------AACGAAGT.............................................................................................................................................................................................................................................2011.001000010
...............................................................................................................................GATCGAATCCGA-------------TTCGTC--GA.................................................................................................................................................................................................2011.001100000
...........................GGTTCGAGGTGACCTGGC......................................................................................................................................................................................................................................................................................................................1811.001010000
..............................................................................................................................................................................................................................................AAATCTCAT-AAA----CTCATTAGACC.........................................................................................2311.001010000
.......GTTAT------CC------AGGTTCGAGGC..............................................................................................................................................................................................................................................................................................................................1811.001010000
..........................AGGTTCGAGGTGACCTGGCC.....................................................................................................................................................................................................................................................................................................................2011.001010000
.......GTTAT------CC------AGGTTCGAGGTGACCTGGCCGA...................................................................................................................................................................................................................................................................................................................2911.001010000
......GGTTAT------CC------AGGTTCGAGGTGAC...........................................................................................................................................................................................................................................................................................................................2211.001010000
................................GAGGTGACCTGGCCGACGA................................................................................................................................................................................................................................................................................................................1911.001100000
......GGTTAT------CC------AGGTTCGAGGC..............................................................................................................................................................................................................................................................................................................................1911.001010000
droBip1
ACTCCTGGCTAT------TC------AGGTGCGAGGTGACCTATCCGACGACCAGGAAAATGGTGAGTAG--CTAATC------------------------------ACAACGAAGTGGTAACCC-GATCGAATCCGA-------------TTTGTG--GAGG-C--TCCG------------GCTTATCTCCAGCCAATGGGAAG--CA-----GCCATGGGTTATCAA-------AAATCTTGT-TAG----CTCATTAGGCCCAA---CTAATCT-TGATATATTTA-TAA-ACCAGTACGTCAGTTTAAG--AG---TTTTATAAATTATGG-TACATTTT-------AASizeHit CountTotal NormTotal
No Reads
dp5
CCTCG--GCGAT------CCCACCCAAAGTACGGGCCGGGCTATCCGAAGAGCAGGAGAATGGTAAGTGCCACCGTTCGTACGTTAAAC-------------------GTTACGA--------ACC-GAAAGAAATCGGTCGTCAACGATCATTCGTT--GAAAAC-C-CCAAAACGCGCACACTCCTATCTACGACCAATAGAAA-ACCA-ATGCC--C--CGCGATTGTGTTTTTGAAATCTTGT-TCG----CCCATTAAGATCGGAATCTTATCTGAAATCTAATTT-TGAGTTACTTTCAAAC-------------------------------------G--------TSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................CACACTCCTATCTACGACC.............................................................................................................................................................1912.0020200000000
...CG--GCGAT------CCCACCCAAAGTACGGGC...............................................................................................................................................................................................................................................................................................................................2511.0010100000000
...................CCACCCAAAGTACGGGCCGGG...........................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................CCGGGCTATCCGAAGAGCAGGAGA........................................................................................................................................................................................................................................................................................................2411.0010100000000
.....................ACCCAAAGTACGGGCCGGGCTATCCGAA..................................................................................................................................................................................................................................................................................................................2811.0010100000000
..................................GCCGGGCTATCCGAAGAGCAGG...........................................................................................................................................................................................................................................................................................................2211.0010100000000
....................................CGGGCTATCCGAAGAGCAGGAGAATGA....................................................................................................................................................................................................................................................................................................2711.0010000000001
.................................GGCCGGGCTATCCGAAGAGC..............................................................................................................................................................................................................................................................................................................2011.0010100000000
.................................GGCCGGGCTATCCGAAGAG...............................................................................................................................................................................................................................................................................................................1911.0010100000000
..........................................ATCCGAAGAGCAGGAGAAT......................................................................................................................................................................................................................................................................................................1911.0010100000000
droPer2
CCTCG--GCGAT------CCCACCCAAAGTACGGGCCGGGCTATCCGAAGAGCAGGAGAATGGTAAGTGGCACCGTTCGTACGTTAAAC-------------------GTTACGAA--------CC-GAAAGCAATCGGTCGTCAACGATCATTCGTT--GAAAAC-C-CCAAAACGCGCATACTCCTATCTACGACCAATAGAAA-ACCA-ATGCC--C--CGCGATTGTGTATCTGAAATCTTGT-TCG----CTTATTAAGATCGGAATCTTATCTGAAATCTATTTT----------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................CAAAGTACGGGCCGGGCTATC......................................................................................................................................................................................................................................................................................................................2113.003300000
............................GTACGGGCCGGGCTATCC.....................................................................................................................................................................................................................................................................................................................1812.002200000
.........GAT------CCCACCCAAAGTACGGGCCGGGC..........................................................................................................................................................................................................................................................................................................................2612.002200000
....................CACCCAAAGTACGGGCCGGGCT.........................................................................................................................................................................................................................................................................................................................2211.001010000
.................................................................................................................................AAGCAATCGGTCGTCAAC................................................................................................................................................................................................................1811.001001000
....................................CGGGCTATCCGAAGAGCAGGA..........................................................................................................................................................................................................................................................................................................2111.001000001
....................CACCCAAAGTACGGGCCGG............................................................................................................................................................................................................................................................................................................................1911.001010000
.......................CCAAAGTACGGGCCGGGCTATCC.....................................................................................................................................................................................................................................................................................................................2311.001100000
.......................CCAAAGTACGGGCCGGGCT.........................................................................................................................................................................................................................................................................................................................1911.001100000
.............................................CGAAGAGCAGGAGAATGAC...................................................................................................................................................................................................................................................................................................19110.091000001
droVir3
CCTGGCTCTGATGACGTGCC------CGGCCTGGGCAGATTTATCCGACGAGCAAGAGAATGGTGAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................AGATTTATCCGACGAGCAAGAGAAT......................................................................................................................................................................................................................................................................................................2518.008001000000000000000000010000000000000000000000000000000000000060
.................................GGCAGATTTATCCGACGAGC..............................................................................................................................................................................................................................................................................................................2013.003000200000000000000000000000000000000000000000000000000000001000
.....................................GATTTATCCGACGAGCAAGAGAATG.....................................................................................................................................................................................................................................................................................................2512.002001000000000000100000000000000000000000000000000000000000000000
...................................CAGATTTATCCGACGAGCAAGA..........................................................................................................................................................................................................................................................................................................2212.002001000000000000000000000000000000000000000000000000000000000010
....................................AGATTTATCCGACGAGCAAGA..........................................................................................................................................................................................................................................................................................................2112.002001000000000001000000000000000000000000000000000000000000000000
....GCTCTGATGACGTGCC------CGGCCTGG.................................................................................................................................................................................................................................................................................................................................2412.002002000000000000000000000000000000000000000000000000000000000000
..........................CGGCCTGGGCAGATTTATCCGACGA................................................................................................................................................................................................................................................................................................................2512.002000000000000001100000000000000000000000000000000000000000000000
....................................AGATTTATCCGACGAGCAAG...........................................................................................................................................................................................................................................................................................................2012.002000100000000000000000000000000000000000000000000000000000000010
.......CTGATGACGTGCC------CGGCCTGGGC...............................................................................................................................................................................................................................................................................................................................2311.001000000000000000000100000000000000000000000000000000000000000000
....................................AGATTTATCCGACGAGCAAGAGA........................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.....CTCTGATGACGTGCC------CGGCCTGG.................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..................................GCAGATTTATCCGACGAGC..............................................................................................................................................................................................................................................................................................................1911.001000000000000000000100000000000000000000000000000000000000000000
.........GATGACGTGCC------CGGCCTGG.................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.................................GGCAGATTTATCCGACGA................................................................................................................................................................................................................................................................................................................1811.001000000000000001000000000000000000000000000000000000000000000000
...............GTGCC------CGGCCTGGGCAGATTTATCC.....................................................................................................................................................................................................................................................................................................................2511.001000000000000000100000000000000000000000000000000000000000000000
.....................................GATTTATCCGACGAGCAAGAGAATGA....................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..................................GCAGATTTATCCGACGAGCAAGA..........................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.....CTCTGATGACGTGCC------CGGC.....................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000100000000000000000000000000000
.....................................GATTTATCCGACGAGCAAGAGA........................................................................................................................................................................................................................................................................................................2211.001000000000000000000000100000000000000000000000000000000000000000
......TCTGATGACGTGCC------CGGCCTGGGC...............................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
.....CTCTGATGACGTGCC------CGGCCTGGGC...............................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
............GACGTGCC------CGGCCTGGGCAGA............................................................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
..........................CGGCCTGGGCAGATTTATCCGACGAGC..............................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000001000
..................................GCAGATTTATCCGACGAGCAAGAGAAT......................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
......................................ATTTATCCGACGAGCAAGAGAATG.....................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...................................CAGATTTATCCGACGAGCAAGAGA........................................................................................................................................................................................................................................................................................................2411.001000000000000000000000010000000000000000000000000000000000000000
....................................AGATTTATCCGACGAGCAAGAGAATG.....................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
.......................................TTTATCCGACGAGCAAGAGA........................................................................................................................................................................................................................................................................................................2011.001000000010000000000000000000000000000000000000000000000000000000
...GGCTCTGATGACGTGCC------CGGCCTGG.................................................................................................................................................................................................................................................................................................................................2511.001000000000000000100000000000000000000000000000000000000000000000
..................................GCAGATTTATCCGACGAG...............................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.......CTGATGACGTGCC------CGGCCTG..................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..........................CGGCCTGGGCAGATTTATCCGACG.................................................................................................................................................................................................................................................................................................................2411.001000000000000000000100000000000000000000000000000000000000000000
....................................AGATTTATCCGACGAGCA.............................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...GGCTCTGATGACGTGCC------CGGCCTGGGCA..............................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
...................................CAGATTTATCCGACGAGCAAGAG.........................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
....GCTCTGATGACGTGCC------CGGCCTGA.................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.........................................TATCCGACGAGCAAGAGA........................................................................................................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
.....................................GATTTATCCGACGAGCAAGAGAAT......................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
......................................ATTTATCCGACGAGCAAGAGAA.......................................................................................................................................................................................................................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
..........................CGGCCTGGGCAGATTTATCC.....................................................................................................................................................................................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
droMoj3
TCTCGCTCTGGTGACGTGTCC-----AG-CCAGAGCAGATCTGTCCGATGAGCAGGAGAATGGTGAGTAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................AGCAGATCTGTCCGATGAGCAGGA..........................................................................................................................................................................................................................................................................................................2413.003100002
..................................GCAGATCTGTCCGATGAGCAGGA..........................................................................................................................................................................................................................................................................................................2312.002000002
..................................GCAGATCTGTCCGATGAGCAGGAG.........................................................................................................................................................................................................................................................................................................2412.002100001
..................................GCAGATCTGTCCGATGAGC..............................................................................................................................................................................................................................................................................................................1912.002000002
..................................GCAGATCTGTCCGATGAGCAGGAGA........................................................................................................................................................................................................................................................................................................2512.002000011
......................................ATCTGTCCGATGAGCAGGA..........................................................................................................................................................................................................................................................................................................1911.001000001
.....................................GATCTGTCCGATGAGCAGGAG.........................................................................................................................................................................................................................................................................................................2111.001100000
........................................CTGTCCGATGAGCAGGAGA........................................................................................................................................................................................................................................................................................................1911.001100000
.................................AGCAGATCTGTCCGATGAGC..............................................................................................................................................................................................................................................................................................................2011.001000001
..........................AG-CCAGAGCAGATCTGTCCGATG.................................................................................................................................................................................................................................................................................................................2311.001100000
........TGGTGACGTGTCC-----AG-CCAGAG................................................................................................................................................................................................................................................................................................................................2111.001000001
...............GTGTCC-----AG-CCAGAGCAGATCTGTC......................................................................................................................................................................................................................................................................................................................2411.001000010
....................................AGATCTGTCCGATGAGCAGG...........................................................................................................................................................................................................................................................................................................2011.001000100
.........GGTGACGTGTCC-----AG-CCAGAG................................................................................................................................................................................................................................................................................................................................2011.001000010
............GACGTGTCC-----AG-CCAGAGCAGATCT.........................................................................................................................................................................................................................................................................................................................2411.001000010
....GCTCTGGTGACGTGTCC-----AG-C.....................................................................................................................................................................................................................................................................................................................................2011.001100000
..............CGTGTCC-----AG-CCAGAGCAGATCT.........................................................................................................................................................................................................................................................................................................................2211.001100000
...........TGACGTGTCC-----AG-CCAGAGCAGAT...........................................................................................................................................................................................................................................................................................................................2311.001000001
......................................ATCTGTCCGATGAGCAGGAGA........................................................................................................................................................................................................................................................................................................2111.001001000
..................................GCAGATCTGTCCGATGAGCAGG...........................................................................................................................................................................................................................................................................................................2211.001000001

Generated: 05/19/2015 at 03:10 AM