ID:

dsi_4299

 Coordinate:

3l:20770265-20770414 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-42.6 -42.5 -42.4

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+
mature
  1. 2l:902120-902137 +
  2. 2l:9350590-9350607 +
  3. 2r:4280584-4280601 +
  4. 2r:13338946-13338963 +
  5. 2r:18092608-18092625 +
  6. 3l:537405-537422 +
  7. 3l:7308971-7308988 +
  8. 3l:9480255-9480272 +
  9. 3l:10684674-10684691 +
  10. 3l:17533961-17533978 +
  11. dsi_4299  3l:20770362-20770379 +
  12. 3r:7346806-7346823 +
  13. 3r:11377598-11377615 +
  14. 3r:24097490-24097507 +
  15. 3r:25449893-25449910 +
  16. x:965836-965853 +
  17. x:8591026-8591043 +
  18. x:13062182-13062199 +
  19. x:14974967-14974984 +
  20. x:15137292-15137309 +
star

Sense Strand Reads

ACAGCAACAGCAGCAGAAGCAGCATCACCGGGAATTGGAGGATTGCCTAAGTGCCATTGAAGCTGATCCATTGCAGTTGTTGCATTGCGACGACTTCTATAGAACATCAGCCCTAGCAGAGAGTGTTGCAGCCAGTCTAGGCCCACAGCAGCAGCAGCAGCAGCAACGGCAGCACACCTAGATTATGGAGACGGTCCACTAGGGCGTTTTGGACGTGAGCGTGAGAATATGACTGGGGGTTGTCACCAGC
**************************************************.((((.(((..((((.....((((.(((((((...((((((.((((((.(((..........)))..))).)))))))))(((......)))...))))))).))))))))..))).))))..............((((.....))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
...............................................................................................TCTATTGAAAGTCAGCCCT........................................................................................................................................ 19 3 13 0.92 12 5 0 7 0 0
.......................................................................................................................AGAGTGTCGCTGCCAGTCT................................................................................................................ 19 2 3 0.33 1 1 0 0 0 0
..................................................................................................................................................................................................................................ATATGGCTGGGGGTTGTA...... 18 2 10 0.30 3 0 3 0 0 0
............................CGGGATCTGGAGGATTGCC........................................................................................................................................................................................................... 19 2 4 0.25 1 0 0 0 1 0
..................................................................................................................................................................................................................................ATATGGCTGGGGGTTGTG...... 18 2 5 0.20 1 0 1 0 0 0
................................ATTGGGAGGATTGCCTAAAT...................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 1
................................................................................................................................................................................................................................AAATATGGTTGGGGGTTGTC...... 20 3 9 0.11 1 0 1 0 0 0
...................................................................................................................................................GCAGCAGCAGCAGCAGCA..................................................................................... 18 0 20 0.10 2 0 0 0 2 0
.............................................................................................................................................CCCACAGCAGCAGCA.............................................................................................. 15 0 20 0.05 1 0 0 0 1 0
.................................................................................................................................................CAGCAGCAGCAGCAGCAGCA..................................................................................... 20 0 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

TGTCGTTGTCGTCGTCTTCGTCGTAGTGGCCCTTAACCTCCTAACGGATTCACGGTAACTTCGACTAGGTAACGTCAACAACGTAACGCTGCTGAAGATATCTTGTAGTCGGGATCGTCTCTCACAACGTCGGTCAGATCCGGGTGTCGTCGTCGTCGTCGTCGTTGCCGTCGTGTGGATCTAATACCTCTGCCAGGTGATCCCGCAAAACCTGCACTCGCACTCTTATACTGACCCCCAACAGTGGTCG
**************************************************.((((.(((..((((.....((((.(((((((...((((((.((((((.(((..........)))..))).)))))))))(((......)))...))))))).))))))))..))).))))..............((((.....))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 M025
embryo
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.............................................GGATTTACGGTAACTGTGACT........................................................................................................................................................................................ 21 3 6 1.17 7 7 0 0 0 0
TGTCGTTGTCGTCGTCTT........................................................................................................................................................................................................................................ 18 0 3 1.00 3 0 0 3 0 0
.............................................................................................................CGTCATCGTCTCTCACAACCTC....................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0
...............................................................................CACGTAACGGTGCTGAAG......................................................................................................................................................... 18 2 4 0.25 1 0 0 0 1 0
...............................................................................CACGTAACGGTGCTGAAGC........................................................................................................................................................ 19 3 18 0.11 2 0 0 0 2 0
................................TTAACCACCTAAGGGGTTCA...................................................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 1
.............................................................................................................................................................................................CTGCAAGATGATCCC.............................................. 15 2 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:20770215-20770464 + dsi_4299 ACAGCAAC---------A------------GC---AGCAGAAGCAGCATCACCG------------------GG---AATTGGAGG-ATTGCCT---A--AGTG---CC----------------------ATTGAAGCTG-ATC-------------------CAT---TGCAG------------TTGTTGCATTGCGACGACTTCTATAGAACATCAGCCCTAGCAGA---GAGTGTTGCAGCCAGTCTAGGCCCA-----------------------------------------------------CAGCA----------------------------------------G---------------------------------CAGCAGCAGCAGCAACGGCAGCACACCT-----------------------------------AGATTATGGAGACGGTCCACTAGGGCGTTTTGGACGTG-----------------------------------------A---------------------------------------------------------GCG------TGAGAA-TATGACTGGGGGTTGT---CAC---------------CAGC
droSec2 scaffold_11:1174218-1174402 + ACAGCAGC---------A------------GC---AGCAGAAGCAGCATCACCG------------------GG---AATTGGAGG-ATTGCCT---A--AGTG---CC----------------------ATTGAAGCTG-ATC-------------------CAT---TGCAG------------TTGTTGCATTGCGACGACTTCTATAGAACATCAGCCCTAGCAGA---GAGTGTTGCAATCAGTCTAGGCCCA-----------------------------------------------------CAGCA----------------------------------------G---------------------------------CGGCAGCAGCAGCAACGGCAGCACACCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------CAGC
dm3 chr3L:21220956-21221146 + ACAGCAGC---------A---------TCAGC---AGCAGAAGCAGCATCACCG------------------GG---ATTTGGAGG-ATTGCCT---A--AGTG---CC----------------------ATTGAAGCTG-ATC-------------------CAT---TGCAG------------TTGTTGCATTGCGACGACTTCTATAGAACATCAGCCCTAGCAGA---GAGTGTTGCAGCCAGTCTAAGCCCA-----------------------------------------------------CAGCA----------------------------------------G---------------------------------CAGCAG------CAACGGCAGCACACCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAG--------------------CAA---CAA---------------CAGC
droEre2 scaffold_4784:20904995-20905179 + ACATCAGCCTCCGCAACA------------GC---AGCAGCAGCAGCATCACCG------------------TG---AATTGGAGG-ATTGCCT---A--AGTG---CC----------------------ATTGAAGCTG-ATC-------------------CAT---TGCAG------------TTGTTGCATTGCGACGACTTCTATAGAACAGCAGCCCCAGCAGA---GAGTGTTGCAGCCAGCCTAGGCCCA-----------------------------------------------------CAGCA----------------------------------------G---------------------------------CAGCAGCA---------GCAGCACACCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------CAGC
droYak3 3L:19304461-19304657 - ACACCAGCCTCCGCAACA------------GCACCAGCAGCAGCAGCATCACCG------------------GG---AATTGGAGG-ATTGCCT---A--AGTG---CC----------------------ATTGAAGCTG-ATC-------------------CAT---TGCAG------------TTGTTGCATTGCGACGATTTCTACAGAACAGCAGCCCCAGCAGA---GAGTGTTGCATCCAGTCTAGGCCCA-----------------------------------------------------CAGCA----------------------------------------G---------------------------------CAGCAGCA---------TCAGCACACCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAG--------------------CAA---GAG---------------CAAC
droEug1 scf7180000409711:4778591-4778772 - AAAACCTT---------T------------GC---AGCAGCAGCAACATCACCG------------------GG---AATTGCAGG-ATTGCCT---A--AGTG---CC----------------------ATTGAAGCCG-ATC-------------------CAT---TGCAG------------TTGTTACAGTGCGACGATTTCTACAGAACAGCAGCTCCCATTGA---GAGTGTTGCAGCTAGTTTAGGCCCA-----------------------------------------------------CAGCA----------------------------------------A---------------------------------C------------AACAACAACTCACCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAG--------------------CAA---CAG---------------CAGC
droBia1 scf7180000302126:3411894-3412111 - CCAGCAGC---------A------------GC---AGCAGCAGCAGCATCAGCA------------------GGG--CAACGGGCA-GTGACCT---C--ACGC---CC----------------------AC----------------------------------------------------------GGACCTGCGACATGTGCTGCCCAGCAGCAACCACGAT----------------------------------------------------------------------------------------------------------------------------CAGCAGC---------AGCAGCAACATCAGCAGCAGCAGCAGCAGCAGCAGCAACAGGAGCCCG---------------------------------------------------------------------------------------------------------------------------------------------CTGCCTACGATGACGAGGACGAGGAGGAGGACGAGGACG----ACGAGGATGAGGA-CGAGGTGGC---CAG---------------CAGC
droTak1 scf7180000415352:1047939-1048198 - GCAGCAGC---------A------------AC---AGCAGCAGCAGCATAATATGCAGCAGCAACATAATATGC---AGCAGCAAC-ATAGCGT---GCAACAGCCGCC----------------------AC------CG-CCCTC--------------------------------------------GTAT------------------------------------------------------------------------CAGCATGCCACGCGCGGCTTGATGATGCAACAGCAGCCGCAGCA----------------------------CGGCGGCTATCAGCAG---------------------------------------CA---------GCAGCAG------------------------GCCATCGGCAGCAGCTAC--------------------------------------CAGCAGCAA----------CAGTCGCACCACCA---GCAGCAGCAGCAGCAA---CATGCCG---CTGCCTA--------------------------------CCAG--------------------CAG---CAGCACAATATGTATGCCCAGC
droEle1 scf7180000491193:2122597-2122781 - AG--CAAC---------A---CCAGCA---GCACCAGCAGCAGCAACATCACCG------------------GG---AATTGCAGG-ATTGCCT---A--AGTG---CC----------------------ATTGAAGCCG-ATC-------------------CCC---TGCAG------------TTGCTGCAGTGCGACGATTTCTACAGAACAGCAGCGCCAGTGGA---GAGTGTTGCCGCCAGCTTAGCCCCC-----------------------------------------------------CA-----------------------------------------------------------------------------------------CATCAGCAACATACCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAG--------------------CAA---CAG---------------CAAC
droRho1 scf7180000777779:7762-7937 - TCCTCCGC---------A------------GC---AACAGCAGCCACATCACCG------------------GG---AATTGCAGG-ATTGCCT---A--AGTG---CC----------------------ATTGAAGCCG-ATC-------------------CCC---TGCAG------------TTGTTGCAGTGCGACGACTTCTACAGAACAGCAGCGCCAGTAGA---GAGTGTTGCAGCCAGCCTAGCCCCC-----------------------------------------------------GCAC----------------------------------------------------------------------------------------AACAGCAACTTGCCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAG--------------------------CAA---------------CAGC
droFic1 scf7180000453929:372326-372525 + GCAGCAAC---------A------------GC---AGCAGCAGCAACATCATCG------------------GG---AGCTGCAGG-ATTGCCT---A--AGTG---CC----------------------ATCGAAGCGG-ATC-------------------CCT---TGCAG------------TTGCTGCAGTGCGACGATTTCTACAGAGCAGCGGCGCCAGTGGA---GAGTGTGGCAGTTGGTCTTACGCCA-----------------------------------------------------CAGCA----------------------------------------GC---------AGCAGCAGCAACA---------------------GCAGCACCAGCACTCCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAG--------------------CATCAGCAA---------------CAGC
droKik1 scf7180000302698:174812-175065 - ACGGCAAC---------A------------AC---AGCAGCAGCAGCAACAGAAACAGCCCCAACA------GC---AGCACCAAC-AT---CCACAGCAATAA----------------------------CAACTACAG-CAATA------------------------------------------------G----------------------CAGCACCAACTTA---AATGACAGCAGCAATATCTGC----AACAAGTGCAACC---------------------ATAATAAATGCAATTGCGGTAGCA----------------------------------------GC---------AACAGCAG------------------CA---------GCAGCAGCA--CCA----AT-----------AATATTAGCAATAGA--------AA-CTGCAACAATATTAA--CTGCAACAGCAGC-----------------------------------------A------------------------------------------------------------------GTAGTA-GAAACTGCAGCAGTAG---TAG---------------CAAC
droAna3 scaffold_13337:8478982-8479184 - ACAGCAAC---------A------------GCACCAGCAGCAGCATCATCAGCG------------------GG---AGTTGCAGG-ATTGTTT---G--AGTG---CC----------------------ATTGAAGCAG-ATC-------------------CCC---TGCAG------------TTGCTGCACTGCGACGATTTTTACA------CAGCCCCAGTGGA---AAACGTAGCTGCCCCCCTTGCCCCA-----------------------------------------------------ACGCA----------------------------------------G---------------------------------CAGCAGCATCAGCAACAGCAACACACCCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCA-GCAACATCAACAGGCC---CAG---------------CAGC
droBip1 scf7180000396541:618895-619127 - ACAGCAAC---------AACACCACCACCAGC---AGCAGCATCAGCAACAGCG------------------GG---AGTTGCAGG-ATTGTTT---G--AGTG---CC----------------------ATTGAAGCGG-ATC-------------------CCC---TGCAG------------TTGCTGCACTGCGACGATTTTTACA------CAGCCCCAGTGGA---AAACGTAGCAGCTCCCCTTGCCCCA-----------------------------------------------------CACCA----------------------------------------G---------------------------------CAGCAA------CAACAGCAACACACCCACCAGCAGCATCAGCAGGCC-----------------------------------------------------CAGCAGCAACCGCAACAAC-------------A---GCAGC----------------------------------------------------------------------------------------AA---CAT---------------CAGC
dp5 XR_group6:6664520-6664731 + ACAGCAGC---------A------------GC---AGCAACAGCAGCAGCCACA------------------GGTCAAAATGGAGGCACTGGAT---G--AGAG---CCTGCTTGAGACTTTCTCAACGCCACTGC--TCA-GTC-------------------CCC---TGGAGATCAAGACAGAGAAGCAGCA--GCGACAACAGCAGCAG-----CA-----------------------------------------------------------------------------------------------------------------------------------------GC---------AGCAGCAACAACA---------------------GCAGCAGCAGCAATACCA--------------------------------------------------------------------------GCAGCAACATCAGCAAC-------------ACTATCAGC----------------------------------------------------------------------------------AACATTAT---CAA---------------CAAC
droPer2 scaffold_25:224024-224268 + ACAACAGC---------A------------GC---AGCAGCAGCAGCAACAATT------------------GC---AGCTGCAAC-ATCA---------AGTG---CA----------------------GCAACAGCAG-CCCTC--TCCCATGCTGGGAAGACC---AGCGG------------CAACGGACATGCAGCGATATGTGCA-----------------GA---GAATGCAACAGCA-------------------------------------------------------GCAACA------------------------------ACAGCAGC-AACAGCAG------------------------------------------------CAACAGCAGCAACAGCA--------------------------ACAGC---------------------------------------------AACAACAGCAG----GAGATGTACCGCCAGCAGCAGC---AACAGCATCGCA----------------------------------------------------CTAGCA-TGAGTGGCATCGT--C---AAC---------------CAGC
droWil2 scf2_1100000004511:5782020-5782261 - AGAGCGAC---------A------------GC---A---------------AAG------------------AG---ATTTACAGG-ATTGCCT---A--AGTG---CC----------------------ATTGAGGCGG-ATC-------------------CTT---TGCAG------------CTGCTGCAGTGTGAGAATTATTACAGAGCAGCAGCTGCAACATC---AGCAGTGACAGCTAATCATAGCCAA-----------------------------------------------------CAGCAACAACTCCAACAACAACAGCAACAACAAC-AACATCATCAAC---------------------------------------------AGCAGCAACATCATCA--------------------------------------------------------------------------GCAGCAACAGCAACACC-------------AACATCAGC------------------------------------------------------------------------A-ACATTCTCATAGTCTT---CAT---------------CATC
droVir3 scaffold_12963:12102085-12102330 - ACAACAAC---------A------------AC---TTGCTGAAAAGCATTGC--------------------GG---AGTATGAGG-ATTGCAT---GAAACTG---CC----------------------AATGCCTGAGCACC-------------------ACC---CGCCG------------CCGCCGGAGCGCTACCAGCT------GGCAGCGGAGCCACAGGACTTGAGTGTTCGACCAGAGCTAGCCCCG-----------------------------------------------------CAGCA----------------------------------------G---------------------------------CAGCAGGA------ACCGCAGCGT------------------------------------------------------------------------------------------------------------------------------------CGTGGTCTGACTGAGAACGTCAACCTACACAATGTGGCACGTGCGCTGC----TCAGCATGCAGCATATAGCGGCG---CCA---------------CAGC
droMoj3 scaffold_6473:10898050-10898291 + ACAGCAAC---------A------------GC---AGCAACAGCAGCAACAGCA------------------GC---AGCAGCAAC-AGCA---------GCAG---CA----------------------ACAGCAGCAG-CAG-------------------CAA--CAGCAG------------AAGCAGCAAC----------------------------------------------AGCA-------------------------------------------------------------------GCAACAGCAACAGCAGCAACAGCAGCAGCAAC-AACAGCAGCAGCAACAGCAACAGCAG------------------CAGCAGCAGCAGCAACAGCAGCAGCAGC--------------------------A--------ACAGCAG-CAGCAGCAGCAATAG--CGGCAACAGCCAC-----------------------------------------A---------------------------------------------------------GCA------TCAGCA-ACAGCATCAGCAACAG---CAG---------------CAGC
droGri2 scaffold_98:973-1223 - GCAGCAGC---------A------------GC---AGCAGCAGCAGCAGCAGCG------------------GC---AGCAGCAGC-AGCAGCTAAAACAACAA----------------------------CAACAGCAG-GACCAGC---------------AGCAGCAGCAG------------AGGCGGCA----------------------------------------------GCAGCAGCGGCAGC----AGCAGCAGCAGCA---------------------GCAGCAGCAGCGGCAGCAGCAGCATCAACA------------------GCGGC-AGCA------G---------------------------------CAGCAGCAGCAGCAGCGGCAGCAGCAGC--------------------------A--------GCAGCAG----CGGCAGCAGCAG--CAGCGGCAGC--------------------------------------------A---------------------------------------------------------GCA------GCAGCA-GCAGCGGCAGCAGCAG---CAG---------------CGGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACAGCAAC---------A------------GC---AGCAGAAGCAGCATCACCG------------------GG---AATTGGAGG-ATTGCCT---A--AGTG---CC----------------------ATTGAAGCTG-ATC-------------------CAT---TGCAG------------TTGTTGCATTGCGACGACTTCTATAGAACATCAGCCCTAGCAGA---GAGTGTTGCAGCCAGTCTAGGCCCA-----------------------------------------------------CAGCA----------------------------------------G---------------------------------CAGCAGCAGCAGCAACGGCAGCACACCT-----------------------------------AGATTATGGAGACGGTCCACTAGGGCGTTTTGGACGTG-----------------------------------------A---------------------------------------------------------GCG------TGAGAA-TATGACTGGGGGTTGT---CAC---------------CAGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................GCA----------------------------------------G---------------------------------CAGCAGCAGCAGCA...................................................................................................................................................................................................................................................18200.10200000000002000000
...............................................................................................................................................................................................................................................................CCCA-----------------------------------------------------CAGCA----------------------------------------G---------------------------------CAGCA............................................................................................................................................................................................................................................................15200.05100000000001000000
........................................................................................................................................................................................................................................................................................................................CAGCA----------------------------------------G---------------------------------CAGCAGCAGCAGCA...................................................................................................................................................................................................................................................20200.05100000000000100000
droSec2
ACAGCAGC---------A------------GC---AGCAGAAGCAGCATCACCG------------------GG---AATTGGAGG-ATTGCCT---A--AGTG---CC----------------------ATTGAAGCTG-ATC-------------------CAT---TGCAG------------TTGTTGCATTGCGACGACTTCTATAGAACATCAGCCCTAGCAGA---GAGTGTTGCAATCAGTCTAGGCCCA-----------------------------------------------------CAGCA----------------------------------------G---------------------------------CGGCAGCAGCAGCAACGGCAGCACACCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------CAGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....CAGC---------A------------GC---AGCAGAAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.3060060
.....AGC---------A------------GC---AGCAGAAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1530030
.........................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACGGCA.............................................................................................................................................................................................................................................1870.1410010
....CAGC---------A------------GC---AGCAGAAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020020
........................................................................................................................................................................................................................................................................................................................CAGCA----------------------------------------G---------------------------------CGGCAGCAGCAGC....................................................................................................................................................................................................................................................19200.0510010
ACAGCAGC---------A------------GC---AGCAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510001
.....AGC---------A------------GC---AGCAGAAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510010
...GCAGC---------A------------GC---AGCAGAAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510010
dm3
ACAGCAGC---------A---------TCAGC---AGCAGAAGCAGCATCACCG------------------GG---ATTTGGAGG-ATTGCCT---A--AGTG---CC----------------------ATTGAAGCTG-ATC-------------------CAT---TGCAG------------TTGTTGCATTGCGACGACTTCTATAGAACATCAGCCCTAGCAGA---GAGTGTTGCAGCCAGTCTAAGCCCA-----------------------------------------------------CAGCA----------------------------------------G---------------------------------CAGCAG------CAACGGCAGCACACCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAG--------------------CAA---CAA---------------CAGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................CATCACCG------------------GG---ATTTGGAGG-TG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................CTG-ATC-------------------CAT---TGCAG------------TTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................GGAGG-ATTGCCT---A--AGTG---CC----------------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................GAGG-ATTGCCT---A--AGTG---CC----------------------ATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................CG------------------GG---ATTTGGAGG-ATACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CAGC---AGCAGAAGCAGCATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ACATCAGCCTCCGCAACA------------GC---AGCAGCAGCAGCATCACCG------------------TG---AATTGGAGG-ATTGCCT---A--AGTG---CC----------------------ATTGAAGCTG-ATC-------------------CAT---TGCAG------------TTGTTGCATTGCGACGACTTCTATAGAACAGCAGCCCCAGCAGA---GAGTGTTGCAGCCAGCCTAGGCCCA-----------------------------------------------------CAGCA----------------------------------------G---------------------------------CAGCAGCA---------GCAGCACACCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------CAGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........CGCAACA------------GC---AGCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000010
droYak3
ACACCAGCCTCCGCAACA------------GCACCAGCAGCAGCAGCATCACCG------------------GG---AATTGGAGG-ATTGCCT---A--AGTG---CC----------------------ATTGAAGCTG-ATC-------------------CAT---TGCAG------------TTGTTGCATTGCGACGATTTCTACAGAACAGCAGCCCCAGCAGA---GAGTGTTGCATCCAGTCTAGGCCCA-----------------------------------------------------CAGCA----------------------------------------G---------------------------------CAGCAGCA---------TCAGCACACCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAG--------------------CAA---GAG---------------CAACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............GCAACA------------GCACCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18130.08101000000000
........................................................................................................................................................................................................................................................................................................................CAGCA----------------------------------------G---------------------------------CAGCAGCA---------TCAGCA..........................................................................................................................................................................................................................................20200.05101000000000
..................................CAGCAGCAGCAGCATCACCC------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100000000
droEug1
AAAACCTT---------T------------GC---AGCAGCAGCAACATCACCG------------------GG---AATTGCAGG-ATTGCCT---A--AGTG---CC----------------------ATTGAAGCCG-ATC-------------------CAT---TGCAG------------TTGTTACAGTGCGACGATTTCTACAGAACAGCAGCTCCCATTGA---GAGTGTTGCAGCTAGTTTAGGCCCA-----------------------------------------------------CAGCA----------------------------------------A---------------------------------C------------AACAACAACTCACCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAG--------------------CAA---CAG---------------CAGCSizeHit CountTotal NormTotal
No Reads
droBia1
CCAGCAGC---------A------------GC---AGCAGCAGCAGCATCAGCA------------------GGG--CAACGGGCA-GTGACCT---C--ACGC---CC----------------------AC----------------------------------------------------------GGACCTGCGACATGTGCTGCCCAGCAGCAACCACGAT----------------------------------------------------------------------------------------------------------------------------CAGCAGC---------AGCAGCAACATCAGCAGCAGCAGCAGCAGCAGCAGCAACAGGAGCCCG---------------------------------------------------------------------------------------------------------------------------------------------CTGCCTACGATGACGAGGACGAGGAGGAGGACGAGGACG----ACGAGGATGAGGA-CGAGGTGGC---CAG---------------CAGCSizeHit CountTotal NormTotal
No Reads
droTak1
GCAGCAGC---------A------------AC---AGCAGCAGCAGCATAATATGCAGCAGCAACATAATATGC---AGCAGCAAC-ATAGCGT---GCAACAGCCGCC----------------------AC------CG-CCCTC--------------------------------------------GTAT------------------------------------------------------------------------CAGCATGCCACGCGCGGCTTGATGATGCAACAGCAGCCGCAGCA----------------------------CGGCGGCTATCAGCAG---------------------------------------CA---------GCAGCAG------------------------GCCATCGGCAGCAGCTAC--------------------------------------CAGCAGCAA----------CAGTCGCACCACCA---GCAGCAGCAGCAGCAA---CATGCCG---CTGCCTA--------------------------------CCAG--------------------CAG---CAGCACAATATGTATGCCCAGCSizeHit CountTotal NormTotal
No Reads
droEle1
AG--CAAC---------A---CCAGCA---GCACCAGCAGCAGCAACATCACCG------------------GG---AATTGCAGG-ATTGCCT---A--AGTG---CC----------------------ATTGAAGCCG-ATC-------------------CCC---TGCAG------------TTGCTGCAGTGCGACGATTTCTACAGAACAGCAGCGCCAGTGGA---GAGTGTTGCCGCCAGCTTAGCCCCC-----------------------------------------------------CA-----------------------------------------------------------------------------------------CATCAGCAACATACCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAG--------------------CAA---CAG---------------CAACSizeHit CountTotal NormTotal
No Reads
droRho1
TCCTCCGC---------A------------GC---AACAGCAGCCACATCACCG------------------GG---AATTGCAGG-ATTGCCT---A--AGTG---CC----------------------ATTGAAGCCG-ATC-------------------CCC---TGCAG------------TTGTTGCAGTGCGACGACTTCTACAGAACAGCAGCGCCAGTAGA---GAGTGTTGCAGCCAGCCTAGCCCCC-----------------------------------------------------GCAC----------------------------------------------------------------------------------------AACAGCAACTTGCCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAG--------------------------CAA---------------CAGCSizeHit CountTotal NormTotal
No Reads
droFic1
GCAGCAAC---------A------------GC---AGCAGCAGCAACATCATCG------------------GG---AGCTGCAGG-ATTGCCT---A--AGTG---CC----------------------ATCGAAGCGG-ATC-------------------CCT---TGCAG------------TTGCTGCAGTGCGACGATTTCTACAGAGCAGCGGCGCCAGTGGA---GAGTGTGGCAGTTGGTCTTACGCCA-----------------------------------------------------CAGCA----------------------------------------GC---------AGCAGCAGCAACA---------------------GCAGCACCAGCACTCCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAG--------------------CATCAGCAA---------------CAGCSizeHit CountTotal NormTotal
No Reads
droKik1
ACGGCAAC---------A------------AC---AGCAGCAGCAGCAACAGAAACAGCCCCAACA------GC---AGCACCAAC-AT---CCACAGCAATAA----------------------------CAACTACAG-CAATA------------------------------------------------G----------------------CAGCACCAACTTA---AATGACAGCAGCAATATCTGC----AACAAGTGCAACC---------------------ATAATAAATGCAATTGCGGTAGCA----------------------------------------GC---------AACAGCAG------------------CA---------GCAGCAGCA--CCA----AT-----------AATATTAGCAATAGA--------AA-CTGCAACAATATTAA--CTGCAACAGCAGC-----------------------------------------A------------------------------------------------------------------GTAGTA-GAAACTGCAGCAGTAG---TAG---------------CAACSizeHit CountTotal NormTotal
No Reads
droAna3
ACAGCAAC---------A------------GCACCAGCAGCAGCATCATCAGCG------------------GG---AGTTGCAGG-ATTGTTT---G--AGTG---CC----------------------ATTGAAGCAG-ATC-------------------CCC---TGCAG------------TTGCTGCACTGCGACGATTTTTACA------CAGCCCCAGTGGA---AAACGTAGCTGCCCCCCTTGCCCCA-----------------------------------------------------ACGCA----------------------------------------G---------------------------------CAGCAGCATCAGCAACAGCAACACACCCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCA-GCAACATCAACAGGCC---CAG---------------CAGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...GCAAC---------A------------GCACCAGCAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21140.071010000
droBip1
ACAGCAAC---------AACACCACCACCAGC---AGCAGCATCAGCAACAGCG------------------GG---AGTTGCAGG-ATTGTTT---G--AGTG---CC----------------------ATTGAAGCGG-ATC-------------------CCC---TGCAG------------TTGCTGCACTGCGACGATTTTTACA------CAGCCCCAGTGGA---AAACGTAGCAGCTCCCCTTGCCCCA-----------------------------------------------------CACCA----------------------------------------G---------------------------------CAGCAA------CAACAGCAACACACCCACCAGCAGCATCAGCAGGCC-----------------------------------------------------CAGCAGCAACCGCAACAAC-------------A---GCAGC----------------------------------------------------------------------------------------AA---CAT---------------CAGCSizeHit CountTotal NormTotal
No Reads
dp5
ACAGCAGC---------A------------GC---AGCAACAGCAGCAGCCACA------------------GGTCAAAATGGAGGCACTGGAT---G--AGAG---CCTGCTTGAGACTTTCTCAACGCCACTGC--TCA-GTC-------------------CCC---TGGAGATCAAGACAGAGAAGCAGCA--GCGACAACAGCAGCAG-----CA-----------------------------------------------------------------------------------------------------------------------------------------GC---------AGCAGCAACAACA---------------------GCAGCAGCAGCAATACCA--------------------------------------------------------------------------GCAGCAACATCAGCAAC-------------ACTATCAGC----------------------------------------------------------------------------------AACATTAT---CAA---------------CAACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...GCAGC---------A------------GC---AGCAACAGCAGCAGCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2550.2010100000000
......GC---------A------------GC---AGCAACAGCAGCAGCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2270.1410100000000
...GCAGC---------A------------GC---AGCAACAGCAGCAGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2480.1310000100000
....................................................................................................................................................................................................................................................................................................................................................................................GCAACAACA---------------------GCAGCAGCAGCA..........................................................................................................................................................................................................................................21200.1020200000000
...................................................................................................................................................................................................................AG-----CA-----------------------------------------------------------------------------------------------------------------------------------------GC---------AGCAGCAACAACA---------------------......................................................................................................................................................................................................................................................19200.1020200000000
..................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACA---------------------GCAGCAGCAG............................................................................................................................................................................................................................................21200.1020200000000
.......................................................................................................................................................................................................GACAACAGCAGCAG-----CA-----------------------------------------------------------------------------------------------------------------------------------------GC---------AG......................................................................................................................................................................................................................................................................................20110.0910100000000
.................................................................................................................................................................................................................GCAG-----CA-----------------------------------------------------------------------------------------------------------------------------------------GC---------AGCAGCAACAACA---------------------GC....................................................................................................................................................................................................................................................23200.0510100000000
....................................................................................................................................................................................................................G-----CA-----------------------------------------------------------------------------------------------------------------------------------------GC---------AGCAGCAACAACA---------------------GCA...................................................................................................................................................................................................................................................21200.0510000100000
...........................................................................................................................................................................................................................A-----------------------------------------------------------------------------------------------------------------------------------------GC---------AGCAGCAACAACA---------------------GCAGCAGC..............................................................................................................................................................................................................................................24200.0510100000000
....................................................................................................................................................................................................................G-----CA-----------------------------------------------------------------------------------------------------------------------------------------GC---------AGCAGCAACAACA---------------------GCAGC.................................................................................................................................................................................................................................................23200.0510100000000
..............................................................................................................................................................................................................GCAGCAG-----CA-----------------------------------------------------------------------------------------------------------------------------------------GC---------AGCAGCAACAAC............................................................................................................................................................................................................................................................................23200.0510000100000
ACAGCAGC---------A------------GC---AGCAACAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000100000
...................................................................................................................................................................................................................AG-----CA-----------------------------------------------------------------------------------------------------------------------------------------GC---------AGCAGCAACAACA---------------------GCAG..................................................................................................................................................................................................................................................23200.0510000000100
..........................................................................................................................................................................................................AACAGCAGCAG-----CA-----------------------------------------------------------------------------------------------------------------------------------------GC---------AGCAGC..................................................................................................................................................................................................................................................................................21200.0510100000000
..............................................................................................................................................................................................................GCAGCAG-----CA-----------------------------------------------------------------------------------------------------------------------------------------GC---------AGCAGCAACAACA---------------------GC....................................................................................................................................................................................................................................................26200.0510010000000
..................................................................................................................................................................................................................CAG-----CA-----------------------------------------------------------------------------------------------------------------------------------------GC---------AGCAGCAACAACA---------------------GCAGCAGCA.............................................................................................................................................................................................................................................29200.0510001000000
......................................................................................................................................................................................................................................................................................................................................................................C---------AGCAGCAACAACA---------------------GCAGCAGCAGCA..........................................................................................................................................................................................................................................26200.0510000001000
droPer2
ACAACAGC---------A------------GC---AGCAGCAGCAGCAACAATT------------------GC---AGCTGCAAC-ATCA---------AGTG---CA----------------------GCAACAGCAG-CCCTC--TCCCATGCTGGGAAGACC---AGCGG------------CAACGGACATGCAGCGATATGTGCA-----------------GA---GAATGCAACAGCA-------------------------------------------------------GCAACA------------------------------ACAGCAGC-AACAGCAG------------------------------------------------CAACAGCAGCAACAGCA--------------------------ACAGC---------------------------------------------AACAACAGCAG----GAGATGTACCGCCAGCAGCAGC---AACAGCATCGCA----------------------------------------------------CTAGCA-TGAGTGGCATCGT--C---AAC---------------CAGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATCGT--C---AAC---------------CAGC1811.001100000
.................................................................................................................................................................................................................................................ACAGCA-------------------------------------------------------GCAACA------------------------------ACAGCAGC-.............................................................................................................................................................................................................................................................................................................20200.051001000
.CAACAGC---------A------------GC---AGCAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
...............................................................................................................................................................................................................................................................................................................CAACA------------------------------ACAGCAGC-AACAGCA......................................................................................................................................................................................................................................................................................................20200.051010000
...................................................................................................................................................................................................................................................................................................................A------------------------------ACAGCAGC-AACAGCAG------------------------------------------------CA...................................................................................................................................................................................................................................................19200.051001000
........................................................................................................................................................................................................................................................................................................................................................GC-AACAGCAG------------------------------------------------CAACAGCAGCA..........................................................................................................................................................................................................................................21200.051000010
...................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAACAGCA--------------------------ACA.......................................................................................................................................................................................................20200.051001000
droWil2
AGAGCGAC---------A------------GC---A---------------AAG------------------AG---ATTTACAGG-ATTGCCT---A--AGTG---CC----------------------ATTGAGGCGG-ATC-------------------CTT---TGCAG------------CTGCTGCAGTGTGAGAATTATTACAGAGCAGCAGCTGCAACATC---AGCAGTGACAGCTAATCATAGCCAA-----------------------------------------------------CAGCAACAACTCCAACAACAACAGCAACAACAAC-AACATCATCAAC---------------------------------------------AGCAGCAACATCATCA--------------------------------------------------------------------------GCAGCAACAGCAACACC-------------AACATCAGC------------------------------------------------------------------------A-ACATTCTCATAGTCTT---CAT---------------CATCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................................................................C-AACATCATCAAC---------------------------------------------AGCAGCAAC...........................................................................................................................................................................................................................................2220.50100100
...............................................................................................................................................................................................................................................................................................................................................................................................................................CATCA--------------------------------------------------------------------------GCAGCAACAGCAACACC-------------............................................................................................................................2220.50100010
.........................................................................................................................................................................................................................................................................................................................................................C-AACATCATCAAC---------------------------------------------AGCAGC..............................................................................................................................................................................................................................................19120.08100010
droVir3
ACAACAAC---------A------------AC---TTGCTGAAAAGCATTGC--------------------GG---AGTATGAGG-ATTGCAT---GAAACTG---CC----------------------AATGCCTGAGCACC-------------------ACC---CGCCG------------CCGCCGGAGCGCTACCAGCT------GGCAGCGGAGCCACAGGACTTGAGTGTTCGACCAGAGCTAGCCCCG-----------------------------------------------------CAGCA----------------------------------------G---------------------------------CAGCAGGA------ACCGCAGCGT------------------------------------------------------------------------------------------------------------------------------------CGTGGTCTGACTGAGAACGTCAACCTACACAATGTGGCACGTGCGCTGC----TCAGCATGCAGCATATAGCGGCG---CCA---------------CAGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCAGCATATAGCGGC..........................1911.001000000000000000000000001000000000000000000000000000000000000000
droMoj3
ACAGCAAC---------A------------GC---AGCAACAGCAGCAACAGCA------------------GC---AGCAGCAAC-AGCA---------GCAG---CA----------------------ACAGCAGCAG-CAG-------------------CAA--CAGCAG------------AAGCAGCAAC----------------------------------------------AGCA-------------------------------------------------------------------GCAACAGCAACAGCAGCAACAGCAGCAGCAAC-AACAGCAGCAGCAACAGCAACAGCAG------------------CAGCAGCAGCAGCAACAGCAGCAGCAGC--------------------------A--------ACAGCAG-CAGCAGCAGCAATAG--CGGCAACAGCCAC-----------------------------------------A---------------------------------------------------------GCA------TCAGCA-ACAGCATCAGCAACAG---CAG---------------CAGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................AGCAG-CAG-------------------CAA--CAGCAG------------AAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2540.251000001
.....................................................................................................................................................................AA--CAGCAG------------AAGCAGCAAC----------------------------------------------AGCA-------------------------------------------------------------------..............................................................................................................................................................................................................................................................................................................................................2260.171000010
...........................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAACAGCAA.........................................................................................................................................................................................................................................................................................20200.153300000
......................................................................................................................................................................A--CAGCAG------------AAGCAGCAAC----------------------------------------------AGC..................................................................................................................................................................................................................................................................................................................................................................................................................2070.141000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGC--------------------------A--------ACAGCAG-CAGCAGC...................................................................................................................................................................................23200.102200000
......................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAGCAG------------------CAGCAGC..........................................................................................................................................................................................................................................................22200.102200000
..................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAACAGCAG------------------CA...............................................................................................................................................................................................................................................................21200.102200000
...........................................................................................................................................................................................................................................................................................................................CAACAGCAACAGCAGCAACA.........................................................................................................................................................................................................................................................................................................................20200.102200000
.......................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAGCAG------------------CAGCAGCA.........................................................................................................................................................................................................................................................22200.102200000
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAGCAACA.......................................................................................................................................................................................................................................................................................19200.102000200
............................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAAC-AACAGC.......................................................................................................................................................................................................................................................................................................20200.102000020
.................................................................................................................................................................................................................................................................................................................................................AGCAGCAAC-AACAGCAGCAGC.................................................................................................................................................................................................................................................................................................21200.102200000
..................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAACAGCAG------------------CAGC.............................................................................................................................................................................................................................................................23200.102200000
..............................................................................................................................................CAG-------------------CAA--CAGCAG------------AAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................20180.061000010
...........................................................................................................................................................................................................................................................................................................................CAACAGCAACAGCAGCAACAG........................................................................................................................................................................................................................................................................................................................21200.051000010
........................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGCAAC-AACAGCAGC....................................................................................................................................................................................................................................................................................................27200.051000010
...................................................GCA------------------GC---AGCAGCAAC-AGCA---------GC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
.................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCAACAGCA....................................................................................................................................................................................................................................................................................19200.051100000
..................................................AGCA------------------GC---AGCAGCAAC-AGCA---------GCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000010
...................................................GCA------------------GC---AGCAGCAAC-AGCA---------GCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
....................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAGCAGCAGCAAC-.............................................................................................................................................................................................................................................................................................................22200.051000001
......................................AACAGCAGCAACAGCA------------------GC---AGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
...............................C---AGCAACAGCAGCAACAGCA------------------GC---AGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
...................................................GCA------------------GC---AGCAGCAAC-AGCA---------GCAG---CA----------------------AC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000010
.............................................................................................................................................................................................................................................................................................................................ACAGCAACAGCAGCAACAGCAGC....................................................................................................................................................................................................................................................................................................................23200.051100000
...................................................................................................................................................................................................................................................................................................................................................................................AG------------------CAGCAGCAGCAGCAACAGCAGCAGCA.......................................................................................................................................................................................................................................28200.051000010
....CAAC---------A------------GC---AGCAACAGCAGCAACAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000010
.........................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAG------------------CAGCAGCAGCAGCAAC.................................................................................................................................................................................................................................................28200.051000010
..........................................................................................................................................................................................................................................................................................................................GCAACAGCAACAGCAGCAACAGCAG.....................................................................................................................................................................................................................................................................................................................25200.051100000
....................................................................................................GCAG---CA----------------------ACAGCAGCAG-CAG-------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
.................................................................................................................................................................................................................................................................................................................................................AGCAGCAAC-AACAGCAGCAGCAACAGC...........................................................................................................................................................................................................................................................................................27200.051010000
....................................................................................................................................................................................................................................................................................................................................................AGCAAC-AACAGCAGCAGCAACAGC...........................................................................................................................................................................................................................................................................................24200.051100000
..............................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAAC-AACAGCAGCAGCAA...............................................................................................................................................................................................................................................................................................26200.051000010
..................................................................................................................................................................................................AAC----------------------------------------------AGCA-------------------------------------------------------------------GCAACAGCAACAGCA...............................................................................................................................................................................................................................................................................................................................22200.051100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC--------------------------A--------ACAGCAG-CAGCAGCA..................................................................................................................................................................................22200.051100000
...................................................................................................................................................................................................................................................................................................................................................................................AG------------------CAGCAGCAGCAGCAACAGC..............................................................................................................................................................................................................................................21200.051100000
............................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAAC-AACA.........................................................................................................................................................................................................................................................................................................18200.051010000
......................................................................................................................................................................................................................................................A-------------------------------------------------------------------GCAACAGCAACAGCAGCAACAGCAG.....................................................................................................................................................................................................................................................................................................................26200.051100000
......................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAGCAG------------------CAGCAGCAGCAGC....................................................................................................................................................................................................................................................28200.051100000
.........................................................................................................................................................................................................................................................................................................................................................C-AACAGCAGCAGCAACAGCA..........................................................................................................................................................................................................................................................................................20200.051000010
.............................................................................................................................................................................................GCAGCAAC----------------------------------------------AGCA-------------------------------------------------------------------GCAACAGCAACAGCA...............................................................................................................................................................................................................................................................................................................................27200.051000010
..................................................................................................................................................................................................................................................................................................................................AACAGCAGCAACAGCAGCAGCAAC-.............................................................................................................................................................................................................................................................................................................24200.051000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-ACAGCATCAGCAACAG---C.....................19200.051100000
................................................................................AGCAAC-AGCA---------GCAG---CA----------------------ACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
..............................................CAACAGCA------------------GC---AGCAGCAAC-AGCA---------GCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000010
...................................................................................................................................................................................................................................................................................................................................ACAGCAGCAACAGCAGCAGCAAC-.............................................................................................................................................................................................................................................................................................................23200.051100000
........................................................................................................................................................................................................................................................................................................................................................AC-AACAGCAGCAGCAACAGCAACA.......................................................................................................................................................................................................................................................................................24200.051100000
.........................................................................................CA---------GCAG---CA----------------------ACAGCAGCAG-CAG-------------------C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
..................................................................................................................................................................................................................................................................................................................................................................................CAG------------------CAGCAGCAGCAGCAACAGCAGC...........................................................................................................................................................................................................................................25200.051100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGCAACAG---CAG---------------CAGC19200.051100000
droGri2
GCAGCAGC---------A------------GC---AGCAGCAGCAGCAGCAGCG------------------GC---AGCAGCAGC-AGCAGCTAAAACAACAA----------------------------CAACAGCAG-GACCAGC---------------AGCAGCAGCAG------------AGGCGGCA----------------------------------------------GCAGCAGCGGCAGC----AGCAGCAGCAGCA---------------------GCAGCAGCAGCGGCAGCAGCAGCATCAACA------------------GCGGC-AGCA------G---------------------------------CAGCAGCAGCAGCAGCGGCAGCAGCAGC--------------------------A--------GCAGCAG----CGGCAGCAGCAG--CAGCGGCAGC--------------------------------------------A---------------------------------------------------------GCA------GCAGCA-GCAGCGGCAGCAGCAG---CAG---------------CGGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................................................................................................................................................................................GGCA----------------------------------------------GCAGCAGCGGCAGC----A....................................................................................................................................................................................................................................................................................................................................................................................................19200.05110

Generated: 05/18/2015 at 09:14 AM