ID:

dsi_4291

 Coordinate:

3r:21888418-21888567 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.4 -18.4 -18.3 -18.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CAGCTGTAAGGAAATGGGCTAAAGTGTTGAAGTTGCGTATACGCCGTGTGGTGGGTATGGGTTCGAGTATGAGTATGTGATCCGAGTGAATCCTTATACGCACAACCGTCCGCACAAACACTCACTACCCACACACACACAGAAACACACATATCAGCGTGTTAGAGGGCTCGTTGTCATCTCTCTACATTAGAACCACTAATTGTATACATATGTATATTATGTATGTACGATATTCGCATATGTATTG
******************************************************......((((...((((.(((((((.....(((((.........((.((....)).)).........))))).....................)))))))...)))).....))))******************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 M053
female body
 GSM343915
embryo
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
........................................ACGCCGTGTGGTGGGTA................................................................................................................................................................................................. 17 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................GTATGGGTTCGAGTATGA.................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0
........................TGTTGAAGTTGCGTATACGCCGTGTG........................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0
....TGTAAGGAAATGGGCTAAAGTGTTGA............................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0
....TGTAAGGAAATGGGCTAAAGT................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................ATCAGCGTGTTAGAGGGC................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................TGTGATCCGAGTGAATCCTTATACGCA.................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0
CAGCTGTAAGGAAATGGGCTAAAGT................................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................CGTTGTCATCTGTTTACA............................................................. 18 2 5 0.20 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................GTTGTCATCTGTTTACAT............................................................ 18 2 10 0.20 2 0 2 0 0 0 0 0 0
.......................................................................................................................................................................................TCTACATTCGAACCA.................................................... 15 1 7 0.14 1 0 0 0 0 0 1 0 0
........................................................ATGGATTTGAGTATGAG................................................................................................................................................................................. 17 2 20 0.10 2 0 0 0 0 0 2 0 0
.....................................................GGTCTGGGTTCGAGT...................................................................................................................................................................................... 15 1 20 0.10 2 0 0 0 0 0 0 2 0
..............................................................................GATCCGAGTGAATGC............................................................................................................................................................. 15 1 10 0.10 1 1 0 0 0 0 0 0 0
........................................................................................................................................................ATTAGCGTGTTAAAGGGAT............................................................................... 19 3 14 0.07 1 0 0 0 1 0 0 0 0
...........................................................................TGTGATCCGAGTGGA................................................................................................................................................................ 15 1 16 0.06 1 0 0 0 0 0 0 0 1
...........................................................GGTTCGAGTGAGAGTATAT............................................................................................................................................................................ 19 3 16 0.06 1 1 0 0 0 0 0 0 0
............................................................GTTCGATTAGGCGTATGTG........................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

GTCGACATTCCTTTACCCGATTTCACAACTTCAACGCATATGCGGCACACCACCCATACCCAAGCTCATACTCATACACTAGGCTCACTTAGGAATATGCGTGTTGGCAGGCGTGTTTGTGAGTGATGGGTGTGTGTGTGTCTTTGTGTGTATAGTCGCACAATCTCCCGAGCAACAGTAGAGAGATGTAATCTTGGTGATTAACATATGTATACATATAATACATACATGCTATAAGCGTATACATAAC
********************************************************************************......((((...((((.(((((((.....(((((.........((.((....)).)).........))))).....................)))))))...)))).....))))****************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902009
testis
 GSM343915
embryo
 M053
female body
 SRR553488
RT_0-2 hours eggs
...............................................................................................................................................................ACAATCTGCCGAGCAGCACT....................................................................... 20 3 2 0.50 1 1 0 0 0 0
............................................................................................................................................................................CAAGAGGAGAGAGATGTAATT......................................................... 21 3 3 0.33 1 0 1 0 0 0
...................................................................................................................................GTGTGTCTGTCTTTGGGTGTAT................................................................................................. 22 2 3 0.33 1 0 0 1 0 0
..................................................................................................................GTTCGGGAGTGATGGGTTTG.................................................................................................................... 20 3 4 0.25 1 0 0 0 1 0
....................................................................................................ATGTTGGGAGGCGTGTTAGTG................................................................................................................................. 21 3 5 0.20 1 1 0 0 0 0
...................................................................................................................TTTGTCAGTGATGGGGG...................................................................................................................... 17 2 12 0.08 1 0 0 0 0 1
...........................................................................................GGAATATGCGTATTCG............................................................................................................................................... 16 2 17 0.06 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:21888368-21888617 + dsi_4291 CAGCTGTA--------AGGAAATGGGC-TAAAGTGTTGAAGTTGCGTATACGCCGTG----TGGTGGGTATGGGT------TCGAGTATG-AG-TATGTG-ATCCGAGTG--------------AATCC-TT-----------ATACGCACAACCGTCCGCACAA---------ACAC-TCAC-----------------------------------------------------TACCCACACA-----------------------------C------------------------ACACAG--AAACA----------------------------------------CACATATCAGCGT----GTT---------------AGAG---GGCTCGTTGTCATCTCTCTACA-----------------------------TT--------------------AGAACCACTAATTGTAT--------------ACATATGTA-----TAT-----TA--------T----GTATGTA----------CGAT---------ATTCGCATA--TGTATTG-----
droSec2 scaffold_13:1203701-1203950 + CAGCTGTA--------AGGAAATGGGC-TGAAGTGTTGAAGTTGGGTATACGCCGTG----TGGTGGGTATGGGT------TCGAGTATG-AG-TATGTG-ATCCGAGTG--------------AATCC-TT-----------ATACGCACAACCTTCCGCACAA---------ACAC-TCAC-----------------------------------------------------TACCCACACA-----------------------------C------------------------ACACAG--AAACA----------------------------------------CACATATCAGCGT----GTT---------------AGAG---GGCTCGTTGTCATCTCTCTACA-----------------------------TT--------------------AGAACCACTAATTTTAT--------------ACATATGTA-----TAT-----TA--------T----GTATGTA----------CGAT---------ATTCGCATA--TGCATTG-----
dm3 chr3R:22428612-22428867 + CAGCTGTA--------AGGAAATGGGC-TGAAGTGTTGAGGTTGCATATACGCCGTG----TGGTGGGTATGGGT------TCGAGTATG-AG-TATGTG-ATCCGAGTG--------------AATCC-TT-----------ACACGCACAACCTTCCGCACAA---------ACAC-TCAC-----------------------------------------------------TACCCACCTAC----C-------------CAC----A--C------------------------ACACAG--AAACA----------------------------------------CACATATCAGCGT----GTT---------------AGAG---GGCTCGTTGTCATCTCTCTATA-----------------------------TT--------------------AGAACTACTAATTGTAT--------------ACATATGTA-----TAT-----TA--------T----GTATTTA----------CGAT---------ATTCGCATA--TGTATTG-----
droEre2 scaffold_4820:5626994-5627247 - CAGCTGGA--------AGGAAATGGGC-TGAAGTGTTCAAGTTGCGTATACGCCGTG----TGGTGGGTATGGGT------------ATG-AG-TATGTG-ATCCGAGTG--------------AAACC-CT-----------ACGCGCACAACCTTCCGCACAA-------ACACAC-TCAC-----------------------------------------------------TGCCCACACACAC-----------------ACACACACAT------------------------A----C--AAACA----------------------------------------CACATATCAGCGT----GTT---------------AGAG---GGCTCGTTGTCATCTCTCTATA-----------------------------TT--------------------AGAACCACTAATTGTAT--------------ACATATGTA-----TAT-----TA--------T----GTATGTA----------CGAT---------ATTCGCATA--TGTATTG-----
droYak3 3R:24071331-24071596 - CAGCTGAA--------AGGAAATGGGC-TGAAGTGTTGAAGTTGCGTATACGCCGTG----TGGTGGGTATGGGTATGGGTATGAGTATG-AG-TATGTG-ATCCGAGTG--------------AAACC-CT-----------ACGCGCACAACCTTTCGCACAA---------ACAC-TCAC-----------------------------------------------------TACCCACACACATACA-------------CAC----ACT--------------------------CACAG--AAACA----------------------------------------CACATATCAGCGT----GTT---------------AGAG---GGCTCGTTGTCATCTCTCTACA-----------------------------TT--------------------AGAACCACTAATTGTAT--------------ACATATGTA-----TAT-----TA--------T----GTATGTA----------CGAT---------ATTCGCATT--TGTATTG-----
droEug1 scf7180000409682:165297-165550 - CAGCTGTA--------AGGAAATGGGA-TAAAGTGTTGAAGTTGCGTATACGCCGTG----TGGTGGGTATGGGT------------ATG-AG-TATGTG-ATCCGAGCG--------------AATCC-TT-----------ACACGCACAACCTCCCGCAC----------------TCAC----------------------------------------------------------ACACA--C--A-------C------------ACAGACAAAA-------TCCCACTACTCAC------ACATA----------------------------------------GACATATCAGCGT----GTT---------------GGAGAAGGACTCGCTGTCATC-------ATTATAGA---------------------------------------------TACCCACTAATTGTAT--------------ACATATGTA-----TAT-----TA--------T----GGATGTA----------CGATAT-------ATTCGCATA--TGTATTG-----
droBia1 scf7180000302113:2665661-2665936 + CAGCTGGA--------AGGAAATGGGC-CAAAGTGTTGAAGTTGCGTAAACGCCGTG----TGGTGGGTATGGGT-TGGCTATGAGTATATGG-CATGTG-ATCCAAGCG--------------AATCC-TGGAGTCCCGATTACACGCACAACCCCTCGCACA-------GAAACAC-CGAC--------------------------------------------------------------------C--CAAAA-------CCATCCACAC------------------------AC------AGACA----------------------------------------GACATATCAGCGC----GTC---------------TGAG---GGCTCGCTGTCATC-------ATTTTATATATAACAATCC------------------------------------GCCACTAATTGTAT--------------ACATATGTA-----AAT-----TA--------T----GTATGTA----------CGAT---------ATTCGCATA--TGTATTG-----
droTak1 scf7180000415286:436504-436720 + CAGCTG-------------------------------GAAGTTGCGTATACGCCCTG----TGGTGGGTATGTG-----------------GGTTATGTG-ATCCAAGCG--------------ACTCC-CT--------AAAACACGCACAACCTCTCGCACAA---------ACAC-CTAC-------------------------------------------------------------------------------------------------------------------------------TCA----------------------------------------TACATATCAG---------------------------AG---GTCTCGCTGTCATC-------ATT-----------------------------ATCTATATATATATATAATTATATATACTAATTGTAT--------------ACATATGTA-----TAT-----TA--------T----GTATGTA----------CGATATTACCGATATTCGCATA--TGTATTG-----
droEle1 scf7180000491280:448094-448330 + CAGGTAGA--------AGGAAATGGGA-TAAAGTGTCGAAGTTGCGTATACGCCGTG----TGGTGGGTATGAG-----------------AG-TATGCG-ATCCGAGCG--------------AATCCCCT-----------ACACGTACAACCTTCCCCACAACCTACAG-------------------------------------------------------------AATCAC--ACACA-----------------------------C------------------------TC------ACCCA----------------------------------------AACATATCAGCGT----GTT---------------AGAG---GGCTCGCTGTC---------CATTAAATA---------------------------------------------TACCCACTAATTGTAT--------------ACATATGTATAGTATAT-----TA--------T----GTACGCA----------CGAT---------ATTCGCATA--TGTATTA-----
droRho1 scf7180000778271:91327-91542 + CAGCTGGA--------AGGAAATGGGA-TAAAGTGTCGAAGTTGCGTATACGCCGTG----TGGTGGGTATG-------------------AG-TATGTG-ATCCGAGCG--------------AATTC-TT-----------ACACGCACAACCTCCCGCACA-------GAAACAC-TCGC-------------------------------------------------------------------------------------------------------------------------------CCA----------------------------------------CACATATCAGCGT----GTT---------------AGAG---AGCTCGCTGTC---------CATGATATA---------------------------------------------TACCCACTAATTGTAT--------------ACATATGTA-----TAT-----TA--------T----GTATGTA----------CGAT---------ATTCGCATA--TGTATTG-----
droFic1 scf7180000454055:2319990-2320237 + CAGCTGGA--------AGAAACTGGGA-TAGAGCGTTGAAGTTGCGTATACGCCGTGTGTGTGGTGGGTATGG-------------------G-CATGTG-ACCCGGGCG--------------AATCC-TC-----------AGA--------CTCCCGCACAAAATA-----ACAC-TCACC----------------------------------------------------CACCCACACACACACACACCG---------------ACAC------------------------AC--AGACACACC----------------------------------------GACATATCAGCGT----GTT---------------TCAG---GGCTCGCTGTC---------CATTTTATA---------------------------------------------TACCCACTATTTGTAT--------------ACATATGTA-----TAT-----TA--------T----GTATGTA----------CGAT---------ATTCGCATA--TGTATTG-----
droKik1 scf7180000302253:275607-275768 - CAGCTGCC--------AGGAATTAGGA-TAGAGCGGCGACATTGCGTATACGCCGTG----TGGTAGGT--------------------G-GG-TATGTG-ATCCAGGCAAACGCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACA----------------------------------------CACATATCAGAA------------------------------GG-------TC---------C-TTTAAT---------------------------------------------ATAGCCACTAATTGTAT--------------ACATATG-----------------------------------TA----------CGAT---------ATTCGCATATATGCATTGAGATG
droAna3 scaffold_13340:16911686-16911918 - -AGCTGGC--------AAGAAATGTGACTACATAGTTGAAATTGCGTATACGCCGTG----TGGTGGGTATG------------------------TGAG-ATCGAAGCAAACACGC----------------------------AC------------GCACAAAGTACAG-------------------------------------------------------------AAATACGCACACA-------------C------------ATATACAAAAAAGAAAAT---------------GA-TTTCC----------------------------------------CACATATCAGCGT----GTT---------------AGCC---AGTTCTCTGTCAT---------------------------------------TATA------------------TACCCACTAACTGTAT--------------ACATATGTA-----TATACATATA--------T----CTATGTA----------CGAT---------ATTCGCATA--TGTATTG-----
droBip1 scf7180000396424:428085-428313 - A-GCTGGTTAGCTGGCAA------GGC-TACA-----GATATTGCGTATACGCCGTG----TGGTGGGTATG------------------------TGAG-ATCCAAGCAAACACGC----------------------------AC------------GCACAAAGTAAAG-------------------------------------------------------------AAATACGCACACA-------------CCTAAATAT----A----AA----------------------AAAAA--CAGCA----------------------------------------CACATATCAGCGT----GTT---------------GGCC---AGTTCTCTA-C---------CA-----------------------------TTATG------------------TACCCACTAACTGTAT--------------ACATATGTA-----TATACATATA--------TGTATCTATGTA----------CGAT---------ATGCGCATA--TGTATTG-----
dp5 2:10440475-10440658 + AAGAA-TA--------AAAAGAAGGAA-GGAGGAGATGATATTGCGTATACGCCATG----TGGTTCGTATGTG-----------------ATTTC-CCAC-TTCAAGCGCACACCC----------------------------AC------------ACACA---------------------------------------------------------------------------------------------------------------------------------------------GACACACT----------------------------------------GA--------------------------------------------CACTGTC---------CA-----------------------------TTATT------------------TTCCCACTAATTGTAT--------------ACATATGTA-----AATATATGTAT-------T----GTATGTGCA-----GTACGAT---------GTACGCATA--TGTATTG-----
droPer2 scaffold_0:10040258-10040442 - GAA-TAAA--------AGAGAAGGGAG-GGAGGAGATGAGATTGCGTATACGTCATG----TGGTTCGTATGTG-----------------ATTTT-ACACTTTCAAGCGCACACCC----------------------------AC------------ACACAG-----------------------------------------------------------------------------------------------------------ACTC------------------------AC--AG------------------------------------------------A--------------------------------------------CACTGTC---------CA-----------------------------TTATT-----------------TTCCCCACTAATTGTAT--------------ACATATGTA-----AATATATGTA--------T----GTATGTACA-----GTACGAT---------GTACGCATA--TGTATTG-----
droWil2 scf2_1100000004943:6771380-6771720 - GAGCAATA--------TGA------------------AAAATTACGTATACGCCACA----TAGTCGGTATG--------------------------TG-ATTTATACA--------------AATAC-TC-----------TAACGCACACACAC----------------------CTACCCAGAGAGACAGCCAGGCAGTCAGAGAGCAGCACATACATATACACATAAAAATACACACACA-----------------------------C------------------------AC------ACACACACATGTATGTAGATATATGAGGATACCGATATAAATAGTCACATATCAGCGTTGAAAATAAAGAGCAATGTTTTAATG---TGC-CGTTCTA---------CA-----------------------------TTATT------------------TACCAACTATTTGTATGTACCATAAAAGAAATATATATA-----AATATATATATACACCCAT----ATATATACATGCAT---ACATAT-----AT-GTTGCATA--TCTTAAT----G
droVir3 scaffold_12822:3513361-3513592 - AAGGAC-G-----------------G-----------CCAATTGCGCATACGACACG----AGGTCTGTATGGG---------------------------ATTTAACTAGGCATATATACACAAATAT-TC-----------TCACGTGGAGCCCT----------------------TCACCA-------------------------GCAGCAGC------------------CCCTTCCA-----------------------------CAT------------------------AT--AGACATATT----------------------------------------CACATATCAGCGC----ATT---------------AAGG---AGCATTTAACAA-------------------------TGTGCCGTTATACATA-----------------AT-GTATGTACGTTTTATAT--------------ACGCCTGCA-----TA------TG--------T----GTGTGTA----------CCATAT-----AT-AATACATG--TGTGTAT-----
droMoj3 scaffold_6540:16818099-16818319 - CA-------------------------------------AATTGCGTATACGACACA----TGGTCTGTATTGC---------------------------ATTTAACTAGACGCAC----ACGAATAT-TC-----------TCAC----------------GA---------GCCCTCCACCA-------------------------GCA----------------------------G--CCCCTCCC--TAC---------CCC----CCC------------------------AT--AGGCATAGT----------------------------------------CACATATCAGCGC----ATC---------------CAGA---AGCATTCAACAA-------------------------TGTACCATT-------ATATATATAGACATATGAT-GTATGTAGGTTTGACGT--------------A-------------CA------TG--------T----GTGTGTA----------CCATAT-----AT-TATACATG--TGTGTAT-----
droGri2 scaffold_14906:1130864-1131098 - GGGT-GTG--------A--------------------CAAATTGCGCATACCACACA----TGGTCTGTATGGG---------------------------AACCAACTACAAACATGCATACAAATAT-TC-----------TCAC----------------GA---------GCCCCTCACCA-------------------------CCA----------------------------A-ACCCGTCCC--CCA---------ACT----CAC------------------------AT--AGATATAGT----------------------------------------CACATATCAGCGC----ATT---------------AAGG---AGCATTTAACAA-------------------------TGTGCCGTTATACATA-----------------AT-GAATGTACGTTTTATAT--------------ATGCCTACA-----TAT-----TA--------C----GTATGTA----------CGATATA---TAT-ATTACATA--TATGTAT-----

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAGCTGTA--------AGGAAATGGGC-TAAAGTGTTGAAGTTGCGTATACGCCGTG----TGGTGGGTATGGGT------TCGAGTATG-AG-TATGTG-ATCCGAGTG--------------AATCC-TT-----------ATACGCACAACCGTCCGCACAA---------ACAC-TCAC-----------------------------------------------------TACCCACACA-----------------------------C------------------------ACACAG--AAACA----------------------------------------CACATATCAGCGT----GTT---------------AGAG---GGCTCGTTGTCATCTCTCTACA-----------------------------TT--------------------AGAACCACTAATTGTAT--------------ACATATGTA-----TAT-----TA--------T----GTATGTA----------CGAT---------ATTCGCATA--TGTATTG-----SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................ACGCCGTG----TGGTGGGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
...................................................................GTATGGGT------TCGAGTATG-A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000000100000
.................................TGTTGAAGTTGCGTATACGCCGTG----TG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
....TGTA--------AGGAAATGGGC-TAAAGTGTTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
....TGTA--------AGGAAATGGGC-TAAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................ATCAGCGT----GTT---------------AGAG---GGC...............................................................................................................................................................................................1811.00110000000000000000
................................................................................................TGTG-ATCCGAGTG--------------AATCC-TT-----------ATACGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
CAGCTGTA--------AGGAAATGGGC-TAAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
droSec2
CAGCTGTA--------AGGAAATGGGC-TGAAGTGTTGAAGTTGGGTATACGCCGTG----TGGTGGGTATGGGT------TCGAGTATG-AG-TATGTG-ATCCGAGTG--------------AATCC-TT-----------ATACGCACAACCTTCCGCACAA---------ACAC-TCAC-----------------------------------------------------TACCCACACA-----------------------------C------------------------ACACAG--AAACA----------------------------------------CACATATCAGCGT----GTT---------------AGAG---GGCTCGTTGTCATCTCTCTACA-----------------------------TT--------------------AGAACCACTAATTTTAT--------------ACATATGTA-----TAT-----TA--------T----GTATGTA----------CGAT---------ATTCGCATA--TGCATTG-----SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................CCGTG----TGGTGGGTATGGGT------TCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
....................................................CCGTG----TGGTGGGTATGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
....................................................................................................................................................................................................................................................................................................................AAACA----------------------------------------CACATATCAGCGT----GTT---------------AGAG---GGCT..............................................................................................................................................................................................2911.0010100
..........................................TGGGTATACGCCGTG----TGGTGGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
.............................GAAGTGTTGAAGTTGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100
................................GTGTTGAAGTTGGGTATACGCCGTG----TG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001
................................................................................................................................................................................................................................................CACACA-----------------------------C------------------------ACACAG--AAACA----------------------------------------............................................................................................................................................................................................................................................18110.0910010
dm3
CAGCTGTA--------AGGAAATGGGC-TGAAGTGTTGAGGTTGCATATACGCCGTG----TGGTGGGTATGGGT------TCGAGTATG-AG-TATGTG-ATCCGAGTG--------------AATCC-TT-----------ACACGCACAACCTTCCGCACAA---------ACAC-TCAC-----------------------------------------------------TACCCACCTAC----C-------------CAC----A--C------------------------ACACAG--AAACA----------------------------------------CACATATCAGCGT----GTT---------------AGAG---GGCTCGTTGTCATCTCTCTATA-----------------------------TT--------------------AGAACTACTAATTGTAT--------------ACATATGTA-----TAT-----TA--------T----GTATTTA----------CGAT---------ATTCGCATA--TGTATTG-----SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................T------TCGAGTATG-AG-TATGTG-ATCCGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TACGCCGTG----TGGTGGGTATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2016.0060000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TA--------AGGAAATGGGC-TGAAGTGTTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.............................................................TGGTGGGTATGGGT------TCGAGTATG-AG-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000010000000
....................AATGGGC-TGAAGTGTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
............................................................................................G-TATGTG-ATCCGAGTG--------------AATCC-TA-----------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................CATATCAGCGT----GTT---------------AGAG---GGCTCG............................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ATGGGC-TGAAGTGTTGAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000
................................................TACGCCGTG----TGGTGGGTATGGGT------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................ATGGGT------TCGAGTATG-AG-T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--------------------AGAACTACTAATTGTAT--------------ACATA.....................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AATGGGC-TGAAGTGTTGAGGTTGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
.......................................................TG----TGGTGGGTATGGGT------TCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TA--------AGGAAATGGGC-TGAAGTGTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..............................................TATACGCCGTG----TGGTGGGTATGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
................................................TACGCCGTG----TGGTGGGTATGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TACGCCGTG----TGGTGGGTATGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TGAGGTTGCATATACGCCGTG----TGGTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..........................................TGCATATACGCCGTG----TGGTGGGTATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................CCGTG----TGGTGGGTATGGGT------TCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................AAACA----------------------------------------CACATATCAGCGT----...........................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AGCTGTA--------AGGAAATGGGC-TGAAGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................TGGTGGGTATGGGT------TCGAGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..............................................TATACGCCGTG----TGGTGGGTATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................CA----------------------------------------CACATATCAGCGT----GTT---------------AGAG---GGC...............................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TGTG-ATCCGAGTG--------------AATCC-TT-----------ACACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................T------TCGAGTATG-AG-TATGTG-ATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................ATG-AG-TATGTG-ATCCGAGTG--------------AATCC-TT-----------A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................................................................................TATG-AG-TATGTG-ATCCGAGTG--------------AATCC-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GAAATGGGC-TGAAGTGTTGAGGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....................ATGGGC-TGAAGTGTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
....................................................CCGTG----TGGTGGGTATGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTA----------CGAT---------ATTCGCATA--TGT.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
......TA--------AGGAAATGGGC-TGAAGTGTTGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TGCATATACGCCGTG----TGGTGGGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
......................TGGGC-TGAAGTGTTGAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...................AAATGGGC-TGAAGTGTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...............................................................................................ATGTG-ATCCGAGTG--------------AATCC-TT-----------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TACGCCGTG----TGGTGGGTATGGGT------TC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................CACATATCAGCGT----GTT---------------AGAG---GGCTCG............................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................................................CGTG----TGGTGGGTATGGGT------TCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TCGAGTATG-AG-TATGTG-ATCCGAGTG--------------AA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................CGCCGTG----TGGTGGGTATGGGT------TCGAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AGCTGTA--------AGGAAATGGGC-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-----TA--------T----GTATTTA----------CGAT---------ATTCGCATA--............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................AGCGT----GTT---------------AGAG---GGCTCGTTG.........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGTCATCTCTCTATA-----------------------------TT--------------------AGAACA...................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................CCGTG----TGGTGGGTATGGGT------T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GCTGTA--------AGGAAATGGGC-TGAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................TATCAGCGT----GTT---------------AGAG---GGCTCG............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.....GTA--------AGGAAATGGGC-TGAAGTGTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TATG-AG-TATGTG-ATCCGAGTG--------------AATCC-T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................AGCGT----GTT---------------AGAG---GGCTCGTTGTCATCTC..................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................T------TCGAGTATG-AG-TATGTG-ATCCGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TACGCCGTG----TGGTGGGTATGGGT------TCGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................AACA----------------------------------------CACATATCAGCGT----GTT---------------AGA......................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGTCATCTCTCTATA-----------------------------TT--------------------AGAAC....................................................................................................................2611.0010000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................CACAG--AAACA----------------------------------------CACATATCAGCGT----...........................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................TATCAGCGT----GTT---------------AGAG---GGCTCGT...........................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TGTA--------AGGAAATGGGC-TGAAGTGTTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AAATGGGC-TGAAGTGTTGAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................AATGGGC-TGAAGTGTTGAGGTTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................CACATATCAGCGT----GTT---------------AGAG---GGCTCGC...........................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................GCCGTG----TGGTGGGTATGGGT------TT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................CGT----GTT---------------AGAG---GGCTCGTT..........................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......A--------AGGAAATGGGC-TGAAGTGTTGAGGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..........................................................................T------TCGAGTATG-AG-TATGTG-ATCCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................GGTGGGTATGGGT------TCGAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................G--AAACA----------------------------------------CACATATCAGCGT----GTT---------------AGAG---GGC...............................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TGGGC-TGAAGTGTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
....TGTA--------AGGAAATGGGC-TGAAGTGTTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................CACGCACAACCTTCCGCACAA---------ACAC-TCAC-----------------------------------------------------.................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................C------------------------ACACAG--AAACA----------------------------------------CACATATCAGCGT----GT.........................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................ACATATCAGCGT----GTT---------------AGAG---GGCTCG............................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................GCCGTG----TGGTGGGTATGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................ATCAGCGT----GTT---------------AGAG---GGCTCGTT..........................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......A--------AGGAAATGGGC-TGAAGTGTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................C----A--C------------------------ACACAG--AAACA----------------------------------------CACATA......................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AATGGGC-TGAAGTGTTGAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................CAC-----------------------------------------------------TACCCACCTAC----C-------------CAC----A--C------------------------ACACAG--A........................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TTCCGCACAA---------ACAC-TCAC-----------------------------------------------------TACCCACCT........................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................C----C-------------CAC----A--C------------------------ACACAG--AAACA----------------------------------------............................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CAGCTGGA--------AGGAAATGGGC-TGAAGTGTTCAAGTTGCGTATACGCCGTG----TGGTGGGTATGGGT------------ATG-AG-TATGTG-ATCCGAGTG--------------AAACC-CT-----------ACGCGCACAACCTTCCGCACAA-------ACACAC-TCAC-----------------------------------------------------TGCCCACACACAC-----------------ACACACACAT------------------------A----C--AAACA----------------------------------------CACATATCAGCGT----GTT---------------AGAG---GGCTCGTTGTCATCTCTCTATA-----------------------------TT--------------------AGAACCACTAATTGTAT--------------ACATATGTA-----TAT-----TA--------T----GTATGTA----------CGAT---------ATTCGCATA--TGTATTG-----SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................CATATCAGCGT----GTT---------------AGAG---GGCTC.............................................................................................................................................................................................2311.0010100000
....................................................................................................................................................................................................................................................................................................................................................................................................AGAG---GGCTCGTTGTCATCTCTCT...............................................................................................................................................................................2311.0010000010
..................................GTTCAAGTTGCGTATACGCCGTG----TGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................GGCTCGTTGTCATCTCTCT...............................................................................................................................................................................1911.0011000000
.......................................................................................................................................................................................................................................................AC-----------------ACACACACAT------------------------A----C--AAACA----------------------------------------CAC.........................................................................................................................................................................................................................................2211.0011000000
droYak3
CAGCTGAA--------AGGAAATGGGC-TGAAGTGTTGAAGTTGCGTATACGCCGTG----TGGTGGGTATGGGTATGGGTATGAGTATG-AG-TATGTG-ATCCGAGTG--------------AAACC-CT-----------ACGCGCACAACCTTTCGCACAA---------ACAC-TCAC-----------------------------------------------------TACCCACACACATACA-------------CAC----ACT--------------------------CACAG--AAACA----------------------------------------CACATATCAGCGT----GTT---------------AGAG---GGCTCGTTGTCATCTCTCTACA-----------------------------TT--------------------AGAACCACTAATTGTAT--------------ACATATGTA-----TAT-----TA--------T----GTATGTA----------CGAT---------ATTCGCATT--TGTATTG-----SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................TGCGTATACGCCGTG----TGGTGGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
..................GAAATGGGC-TGAAGTGTTGAAGTTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000
.................................................................................................................................................................................................................................................................................................................................................................CACATATCAGCGT----GTT---------------AGAG---GGCT..............................................................................................................................................................................................2411.00100100000000
.............................................GTATACGCCGTG----TGGTGGGTATGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.............................GAAGTGTTGAAGTTGCGTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
........................GGC-TGAAGTGTTGAAGTTGCGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--------T----GTATGTA----------CGAT---------ATTCGCATT--TGT.........2611.00100000010000
.............................GAAGTGTTGAAGTTGCGTATACGCCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
...............................................................GTGGGTATGGGTATGGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18140.07100000010000
droEug1
CAGCTGTA--------AGGAAATGGGA-TAAAGTGTTGAAGTTGCGTATACGCCGTG----TGGTGGGTATGGGT------------ATG-AG-TATGTG-ATCCGAGCG--------------AATCC-TT-----------ACACGCACAACCTCCCGCAC----------------TCAC----------------------------------------------------------ACACA--C--A-------C------------ACAGACAAAA-------TCCCACTACTCAC------ACATA----------------------------------------GACATATCAGCGT----GTT---------------GGAGAAGGACTCGCTGTCATC-------ATTATAGA---------------------------------------------TACCCACTAATTGTAT--------------ACATATGTA-----TAT-----TA--------T----GGATGTA----------CGATAT-------ATTCGCATA--TGTATTG-----SizeHit CountTotal NormTotal
No Reads
droBia1
CAGCTGGA--------AGGAAATGGGC-CAAAGTGTTGAAGTTGCGTAAACGCCGTG----TGGTGGGTATGGGT-TGGCTATGAGTATATGG-CATGTG-ATCCAAGCG--------------AATCC-TGGAGTCCCGATTACACGCACAACCCCTCGCACA-------GAAACAC-CGAC--------------------------------------------------------------------C--CAAAA-------CCATCCACAC------------------------AC------AGACA----------------------------------------GACATATCAGCGC----GTC---------------TGAG---GGCTCGCTGTCATC-------ATTTTATATATAACAATCC------------------------------------GCCACTAATTGTAT--------------ACATATGTA-----AAT-----TA--------T----GTATGTA----------CGAT---------ATTCGCATA--TGTATTG-----SizeHit CountTotal NormTotal
No Reads
droTak1
CAGCTG-------------------------------GAAGTTGCGTATACGCCCTG----TGGTGGGTATGTG-----------------GGTTATGTG-ATCCAAGCG--------------ACTCC-CT--------AAAACACGCACAACCTCTCGCACAA---------ACAC-CTAC-------------------------------------------------------------------------------------------------------------------------------TCA----------------------------------------TACATATCAG---------------------------AG---GTCTCGCTGTCATC-------ATT-----------------------------ATCTATATATATATATAATTATATATACTAATTGTAT--------------ACATATGTA-----TAT-----TA--------T----GTATGTA----------CGATATTACCGATATTCGCATA--TGTATTG-----SizeHit CountTotal NormTotal
No Reads
droEle1
CAGGTAGA--------AGGAAATGGGA-TAAAGTGTCGAAGTTGCGTATACGCCGTG----TGGTGGGTATGAG-----------------AG-TATGCG-ATCCGAGCG--------------AATCCCCT-----------ACACGTACAACCTTCCCCACAACCTACAG-------------------------------------------------------------AATCAC--ACACA-----------------------------C------------------------TC------ACCCA----------------------------------------AACATATCAGCGT----GTT---------------AGAG---GGCTCGCTGTC---------CATTAAATA---------------------------------------------TACCCACTAATTGTAT--------------ACATATGTATAGTATAT-----TA--------T----GTACGCA----------CGAT---------ATTCGCATA--TGTATTA-----SizeHit CountTotal NormTotal
No Reads
droRho1
CAGCTGGA--------AGGAAATGGGA-TAAAGTGTCGAAGTTGCGTATACGCCGTG----TGGTGGGTATG-------------------AG-TATGTG-ATCCGAGCG--------------AATTC-TT-----------ACACGCACAACCTCCCGCACA-------GAAACAC-TCGC-------------------------------------------------------------------------------------------------------------------------------CCA----------------------------------------CACATATCAGCGT----GTT---------------AGAG---AGCTCGCTGTC---------CATGATATA---------------------------------------------TACCCACTAATTGTAT--------------ACATATGTA-----TAT-----TA--------T----GTATGTA----------CGAT---------ATTCGCATA--TGTATTG-----SizeHit CountTotal NormTotal
No Reads
droFic1
CAGCTGGA--------AGAAACTGGGA-TAGAGCGTTGAAGTTGCGTATACGCCGTGTGTGTGGTGGGTATGG-------------------G-CATGTG-ACCCGGGCG--------------AATCC-TC-----------AGA--------CTCCCGCACAAAATA-----ACAC-TCACC----------------------------------------------------CACCCACACACACACACACCG---------------ACAC------------------------AC--AGACACACC----------------------------------------GACATATCAGCGT----GTT---------------TCAG---GGCTCGCTGTC---------CATTTTATA---------------------------------------------TACCCACTATTTGTAT--------------ACATATGTA-----TAT-----TA--------T----GTATGTA----------CGAT---------ATTCGCATA--TGTATTG-----SizeHit CountTotal NormTotal
No Reads
droKik1
CAGCTGCC--------AGGAATTAGGA-TAGAGCGGCGACATTGCGTATACGCCGTG----TGGTAGGT--------------------G-GG-TATGTG-ATCCAGGCAAACGCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACA----------------------------------------CACATATCAGAA------------------------------GG-------TC---------C-TTTAAT---------------------------------------------ATAGCCACTAATTGTAT--------------ACATATG-----------------------------------TA----------CGAT---------ATTCGCATATATGCATTGAGATGSizeHit CountTotal NormTotal
No Reads
droAna3
-AGCTGGC--------AAGAAATGTGACTACATAGTTGAAATTGCGTATACGCCGTG----TGGTGGGTATG------------------------TGAG-ATCGAAGCAAACACGC----------------------------AC------------GCACAAAGTACAG-------------------------------------------------------------AAATACGCACACA-------------C------------ATATACAAAAAAGAAAAT---------------GA-TTTCC----------------------------------------CACATATCAGCGT----GTT---------------AGCC---AGTTCTCTGTCAT---------------------------------------TATA------------------TACCCACTAACTGTAT--------------ACATATGTA-----TATACATATA--------T----CTATGTA----------CGAT---------ATTCGCATA--TGTATTG-----SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................GTG----TGGTGGGTATG------------------------TGAG-ATCGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
...................................................................GTATG------------------------TGAG-ATCGAAGCAAACACGC----------------------------A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCAT---------------------------------------TATA------------------TACCCACTAACTGT..........................................................................................................2511.001010000
.........................................TTGCGTATACGCCGTG----TGGTGGGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..................................GTTGAAATTGCGTATACGCCGTG----TGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
droBip1
A-GCTGGTTAGCTGGCAA------GGC-TACA-----GATATTGCGTATACGCCGTG----TGGTGGGTATG------------------------TGAG-ATCCAAGCAAACACGC----------------------------AC------------GCACAAAGTAAAG-------------------------------------------------------------AAATACGCACACA-------------CCTAAATAT----A----AA----------------------AAAAA--CAGCA----------------------------------------CACATATCAGCGT----GTT---------------GGCC---AGTTCTCTA-C---------CA-----------------------------TTATG------------------TACCCACTAACTGTAT--------------ACATATGTA-----TATACATATA--------TGTATCTATGTA----------CGAT---------ATGCGCATA--TGTATTG-----SizeHit CountTotal NormTotal
No Reads
dp5
AAGAA-TA--------AAAAGAAGGAA-GGAGGAGATGATATTGCGTATACGCCATG----TGGTTCGTATGTG-----------------ATTTC-CCAC-TTCAAGCGCACACCC----------------------------AC------------ACACA---------------------------------------------------------------------------------------------------------------------------------------------GACACACT----------------------------------------GA--------------------------------------------CACTGTC---------CA-----------------------------TTATT------------------TTCCCACTAATTGTAT--------------ACATATGTA-----AATATATGTAT-------T----GTATGTGCA-----GTACGAT---------GTACGCATA--TGTATTG-----SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GAA-TAAA--------AGAGAAGGGAG-GGAGGAGATGAGATTGCGTATACGTCATG----TGGTTCGTATGTG-----------------ATTTT-ACACTTTCAAGCGCACACCC----------------------------AC------------ACACAG-----------------------------------------------------------------------------------------------------------ACTC------------------------AC--AG------------------------------------------------A--------------------------------------------CACTGTC---------CA-----------------------------TTATT-----------------TTCCCCACTAATTGTAT--------------ACATATGTA-----AATATATGTA--------T----GTATGTACA-----GTACGAT---------GTACGCATA--TGTATTG-----SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GAGCAATA--------TGA------------------AAAATTACGTATACGCCACA----TAGTCGGTATG--------------------------TG-ATTTATACA--------------AATAC-TC-----------TAACGCACACACAC----------------------CTACCCAGAGAGACAGCCAGGCAGTCAGAGAGCAGCACATACATATACACATAAAAATACACACACA-----------------------------C------------------------AC------ACACACACATGTATGTAGATATATGAGGATACCGATATAAATAGTCACATATCAGCGTTGAAAATAAAGAGCAATGTTTTAATG---TGC-CGTTCTA---------CA-----------------------------TTATT------------------TACCAACTATTTGTATGTACCATAAAAGAAATATATATA-----AATATATATATACACCCAT----ATATATACATGCAT---ACATAT-----AT-GTTGCATA--TCTTAAT----GSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................GAGAGACAGCCAGGCAGTCAGAG............................................................................................................................................................................................................................................................................................................................................................................................2312.00200020
..........................................................................................................................................................................................................................................................................................................................................................AAATAGTCACATATCAGCGTT..............................................................................................................................................................................................................................2111.00100100
.......................................................CA----TAGTCGGTATG--------------------------TG-ATTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
droVir3
AAGGAC-G-----------------G-----------CCAATTGCGCATACGACACG----AGGTCTGTATGGG---------------------------ATTTAACTAGGCATATATACACAAATAT-TC-----------TCACGTGGAGCCCT----------------------TCACCA-------------------------GCAGCAGC------------------CCCTTCCA-----------------------------CAT------------------------AT--AGACATATT----------------------------------------CACATATCAGCGC----ATT---------------AAGG---AGCATTTAACAA-------------------------TGTGCCGTTATACATA-----------------AT-GTATGTACGTTTTATAT--------------ACGCCTGCA-----TA------TG--------T----GTGTGTA----------CCATAT-----AT-AATACATG--TGTGTAT-----SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATACATA-----------------AT-GTATGTACGT...............................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTACGTTTTATAT--------------ACGCCTGC..................................................................................2311.001000000000000000000000010000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------ACGCCTGCA-----TA------TG--------T----GTGTGTA----------CCATA...............................2711.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................AGCGC----ATT---------------AAGG---AGCATTTAACAA-------------------------TG...........................................................................................................................................................2611.001000000000000000000000000000000000100000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA----------CCATAT-----AT-AATACATG--TGT.........2211.001001000000000000000000000000000000000000000000000000000000000000
..................................................CGACACG----AGGTCTGTATGGG---------------------------ATTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000001000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACATA-----------------AT-GTATGTACGTTTTATAT--------------..........................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................ATATCAGCGC----ATT---------------AAGG---A.................................................................................................................................................................................................1811.001000000000000000000000000000000000000100000000000000000000000000
.................................................ACGACACG----AGGTCTGTATGGG---------------------------ATTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000001000000000000000000000000000000000000000000000000000
droMoj3
CA-------------------------------------AATTGCGTATACGACACA----TGGTCTGTATTGC---------------------------ATTTAACTAGACGCAC----ACGAATAT-TC-----------TCAC----------------GA---------GCCCTCCACCA-------------------------GCA----------------------------G--CCCCTCCC--TAC---------CCC----CCC------------------------AT--AGGCATAGT----------------------------------------CACATATCAGCGC----ATC---------------CAGA---AGCATTCAACAA-------------------------TGTACCATT-------ATATATATAGACATATGAT-GTATGTAGGTTTGACGT--------------A-------------CA------TG--------T----GTGTGTA----------CCATAT-----AT-TATACATG--TGTGTAT-----SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTTTGACGT--------------A-------------CA------TG--------T----GT...................................................2111.001000001
droGri2
GGGT-GTG--------A--------------------CAAATTGCGCATACCACACA----TGGTCTGTATGGG---------------------------AACCAACTACAAACATGCATACAAATAT-TC-----------TCAC----------------GA---------GCCCCTCACCA-------------------------CCA----------------------------A-ACCCGTCCC--CCA---------ACT----CAC------------------------AT--AGATATAGT----------------------------------------CACATATCAGCGC----ATT---------------AAGG---AGCATTTAACAA-------------------------TGTGCCGTTATACATA-----------------AT-GAATGTACGTTTTATAT--------------ATGCCTACA-----TAT-----TA--------C----GTATGTA----------CGATATA---TAT-ATTACATA--TATGTAT-----SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................................................CA----TGGTCTGTATGGG---------------------------AACC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110

Generated: 05/18/2015 at 09:32 AM