ID:

dsi_4285

 Coordinate:

3l:11695801-11695950 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-8.6 -8.0 -7.9 -7.7

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(CATA)nSimple_repeatSimple_repeat+

Sense Strand Reads

AAACCAAAATAATTGGAGAGATCAGTCGTTATGTACCGATGTACGTACATGTATGTATGTATGTATGTATAAACATAATTGCCGATTGTTGACAGACGGCGAGCTTTATTTATCTTATTTGCTTTCTTTTCTTACTTTGGCATGTGTGAAAAAACTAGTTTTGCACTGTATTGGTATAAACGTAAACAAACTGAGAAAACAGTTGATTCAATTGTTTAGTATTGTTTGTTTATTTATAACGCGAGCCAAT
**********************************************************************************...................((.(((.((((...(((.((((...............)))).)))))))))).))********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
..................................................................................CGATTGTTGACAGACGGCGAG................................................................................................................................................... 21 0 1 3.00 3 2 0 0 0 0 0 0 1 0 0
.................................................................................CCGATTGTTGACAGACGGCGA.................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
......................................................................................TGTTGACAGACGGCGAGCTTT............................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.......AATAATTGGAGAGATCAGTCG.............................................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...............GAGAGATCAGTCGTTATGTAC...................................................................................................................................................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
....................................................................................ATTGTTGACAGACGGCGAGCTT................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
................AGAGATCAGTCGTTGTGTACCG.................................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
....................................................................................ATTGTTGACAGACGGCGAGCTAA............................................................................................................................................... 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.................................................................................CCGATTGTTGACGGACGGCGA.................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................CGATTGTTGACAGACGGCGAGT.................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GTTTAGTATTGTTTGTTTATT................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................TTTGGCATGTGTGAAAAAACT.............................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
....................................................................................ATTGTTGACAGACGGCGAGCT................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................TTGCCGATTGTTGACGGACGG....................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................TTTCTTTTTTTACTTTGGCAT........................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................TTTCTTTTTTTACTTTGGCATG.......................................................................................................... 22 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................TTGGCATGTGAGAAAAA................................................................................................. 17 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................TTTCTGACTTTGGCATCTG........................................................................................................ 19 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0
.................................................................................................GGAGAGCTTTGTTTATCTCA..................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................TGTTCTTACGTTGGCTTGTGT....................................................................................................... 21 3 7 0.14 1 0 0 0 0 0 1 0 0 0 0
........................................................................................TTGACAGACTGAGAGCTT................................................................................................................................................ 18 2 8 0.13 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................AGAAAACAGTTGATGC......................................... 16 1 8 0.13 1 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................ACAAGTTTTGCAGTGTATTGA............................................................................ 21 3 10 0.10 1 0 0 0 1 0 0 0 0 0 0
........................................................................................TTGACAGACTGTGAGCTCT............................................................................................................................................... 19 3 19 0.05 1 0 0 0 0 0 0 0 0 1 0
..............................................................................................................TATCACAGTTGCTTTCTTTT........................................................................................................................ 20 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

TTTGGTTTTATTAACCTCTCTAGTCAGCAATACATGGCTACATGCATGTACATACATACATACATACATATTTGTATTAACGGCTAACAACTGTCTGCCGCTCGAAATAAATAGAATAAACGAAAGAAAAGAATGAAACCGTACACACTTTTTTGATCAAAACGTGACATAACCATATTTGCATTTGTTTGACTCTTTTGTCAACTAAGTTAACAAATCATAACAAACAAATAAATATTGCGCTCGGTTA
**********************************************************************************************...................((.(((.((((...(((.((((...............)))).)))))))))).))********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553487
NRT_0-2 hours eggs
 M023
head
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
........................................................................................................................................................................AGAACCATATTTCCATTTGT.............................................................. 20 2 2 1.50 3 0 1 0 0 0 2 0 0 0
..................................AGGCTACATGCATGTACATAC................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................................................................ACTGTCTGCCGCTCGAAATA............................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................CTCGAAATAAATAGAATAAAC................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TGTCAACTAAGTTAACAAATC............................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................................................................ACGGCTAACAACTGTCTGCC....................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................TCAGCAATACGTGGCTACATG.............................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0
................................................................................................TCCGCTCGAAAACAATAGAAT..................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................ACCATATTTCCATTTGT.............................................................. 17 1 3 0.33 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................ATAACACACAAATAAAGATTGT......... 22 3 6 0.17 1 0 1 0 0 0 0 0 0 0
................................................................................................................................AAGAATGAAACTGTA........................................................................................................... 15 1 20 0.10 2 0 2 0 0 0 0 0 0 0
...........TTACCTCTCTAGTCA................................................................................................................................................................................................................................ 15 1 17 0.06 1 0 0 0 0 0 0 0 1 0
....................................................................................................................................................TTTTTTGTTCAAAAGGTGA................................................................................... 19 2 17 0.06 1 0 0 0 0 0 0 0 0 1
................................................................................................GTCGCTAGAAATAAAAAGAA...................................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0

Generated: 04/24/2015 at 10:36 AM