ID:

dsi_4236

 Coordinate:

3l:16167734-16167793 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3l_16167492_16167733_-]; CDS [3l_16167492_16167733_-]; CDS [3l_16167794_16168030_-]; exon [3l_16167794_16168030_-]; intron [3l_16167734_16167793_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------##################################################
GGTACTACCCCACTGTGCTGACCCCCAACTATAACGACACTTACTACCAGGTGGGTTTGGAAGCGGTTAGCTATCATAAAGAAAATATATATATTTATTGGTTACTTTAGTTCCGCCACACGGACACCCAGCGCACCACGGAAAGTTTCAAGGCTTTCGC
**************************************************.....((...(((....((((((..(((((.............)))))))))))))).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M023
head
 M024
male body		 M025
embryo
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
..................................................CTGGGTTTGGAAGCG............................................................................................... 15 1 4 1.25 5 5 0 0 0 0 0 0 0 0
....CTACCCCACTGTGCTGACC......................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.....................................................................................................................ACACGGACACCCAGCGCACCACGGAAA................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
....CTACCCCACTGTGCTGACCC........................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................................................GCCACACGGACACCCAGCGC.......................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.................................................GCTGGGTTTGGAAGCG............................................................................................... 16 1 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................GACGCCCAGCGCACCTCGGCA................. 21 3 2 0.50 1 0 0 0 0 0 1 0 0 0
............................................................................TAAAGAAAAAATATGTATGTATT............................................................. 23 3 16 0.19 3 0 0 0 0 0 1 2 0 0
..................................................GCGGGTTTGGAAGCG............................................................................................... 15 1 8 0.13 1 1 0 0 0 0 0 0 0 0
...................................................................................................GGTTACTGTAGTTCAGC............................................ 17 2 10 0.10 1 0 0 0 0 0 0 0 1 0
.................................................................GCTAGCTATCAGAAAGAAAT........................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 0 0 1
................................................GGCTGGGTTTGGAAGCG............................................................................................... 17 2 12 0.08 1 1 0 0 0 0 0 0 0 0
...............................................TAGGTGGGTGTGGAAGCG............................................................................................... 18 2 13 0.08 1 1 0 0 0 0 0 0 0 0
...................................................................TAGGTATCATAATGAAAA........................................................................... 18 2 13 0.08 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

CCATGATGGGGTGACACGACTGGGGGTTGATATTGCTGTGAATGATGGTCCACCCAAACCTTCGCCAATCGATAGTATTTCTTTTATATATATAAATAACCAATGAAATCAAGGCGGTGTGCCTGTGGGTCGCGTGGTGCCTTTCAAAGTTCCGAAAGCG
**************************************************.....((...(((....((((((..(((((.............)))))))))))))).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body
.............................................................................................................................TGCGTAGCGTGCTGCCTTTC............... 20 3 7 0.29 2 1 1

Generated: 04/24/2015 at 02:29 AM