ID:

dsi_4223

 Coordinate:

2r:5867677-5867826 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

five_prime_UTR [2r_5867624_5867676_-]; exon [2r_5867432_5867676_-]; intron [2r_5867677_5867985_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTGGGGCTCCGCTGGCACTTCTGCTGATAAGTGCCCAAGTCGACTTAATTAATCAGTGCCCCGGAGTCGGGGGCAAGTCAATTGGATATTTGGAAACCGCTGGGAACGGGAACCAGCTGCGTGCCCAAAAAAACAGTCGTGAAATGCCGAGGCTCTGATTGGACTCCCATTCCCACACTCCATATCTCACTCACTTTCAGTTGCTGACTAATACTGGGTGGAAGGTAATCAGTTGGAATCGTCACAAGAA
**************************************************......((((((.......))))))(((.....(((((..((((......((((((.((((.(((((.....))..........((((.((......)).)))).....)))..)))).))))))...))))))))).....))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
..................................................................................................................................................................................................................................AATCAGTTGGAATCGTCAC..... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................TGAAATCCCGAGGCTC............................................................................................... 16 1 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................................................TGCCGAGGCTCTGATTGGACTT.................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................ATCAGTTGGAATCGTCACA.... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................TAAGTTGCTGACTAATACT................................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................TTTAAGTTGCTGACTAATACTGGG................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................GTTTAAGTTGCTGACTAATACT................................... 22 2 1 1.00 1 0 0 0 0 1 0 0 0
................................................................................................................................................TGCGGCGGCTCTGATTGGACTCCCAT................................................................................ 26 2 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................................................................TGAAATCCCGAGGCT................................................................................................ 15 1 3 0.67 2 0 2 0 0 0 0 0 0
....................................................................................GATTTTTGGAATGCGCTGGGA................................................................................................................................................. 21 3 2 0.50 1 0 0 0 0 0 1 0 0
...................................................................................................CCGGTAACGGGAACCAACT.................................................................................................................................... 19 3 19 0.42 8 0 0 0 0 0 0 8 0
..........................................................................................................................................GTGAAAACCCGAGGCTC............................................................................................... 17 2 3 0.33 1 0 0 0 0 0 0 0 1
...................................................................................................CCGGTAACGGGAACCA....................................................................................................................................... 16 2 20 0.30 6 0 0 0 0 0 0 6 0
TTAGGACTCCGCTGGCACCT...................................................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 1 0 0
........................................................................................TTTGGAATGCGCTGGGAA................................................................................................................................................ 18 2 4 0.25 1 0 1 0 0 0 0 0 0
..........................................................................................................................................GTGAAATCCCGCGGCTC............................................................................................... 17 2 6 0.17 1 0 1 0 0 0 0 0 0
..........................................................................................................................................GTGAAATCCCGGGGCTC............................................................................................... 17 2 8 0.13 1 0 0 0 0 0 0 0 1
.TAGGACTCCGCTGGCACCT...................................................................................................................................................................................................................................... 19 3 20 0.10 2 0 2 0 0 0 0 0 0
...........................................................................................................................CCCATAAAACCAGTCGT.............................................................................................................. 17 2 14 0.07 1 0 1 0 0 0 0 0 0
TTAGGACTCCGCTGGCA......................................................................................................................................................................................................................................... 17 2 17 0.06 1 0 0 0 0 0 0 0 1
...........................................................................................................................................TGAAATCCCGTGGCTC............................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0
......................................................................................TTTTTGGAATGCGCTGGGAA................................................................................................................................................ 20 3 20 0.05 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................GCTGACTATTACAGGG................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

AACCCCGAGGCGACCGTGAAGACGACTATTCACGGGTTCAGCTGAATTAATTAGTCACGGGGCCTCAGCCCCCGTTCAGTTAACCTATAAACCTTTGGCGACCCTTGCCCTTGGTCGACGCACGGGTTTTTTTGTCAGCACTTTACGGCTCCGAGACTAACCTGAGGGTAAGGGTGTGAGGTATAGAGTGAGTGAAAGTCAACGACTGATTATGACCCACCTTCCATTAGTCAACCTTAGCAGTGTTCTT
**************************************************......((((((.......))))))(((.....(((((..((((......((((((.((((.(((((.....))..........((((.((......)).)))).....)))..)))).))))))...))))))))).....))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902009
testis
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 M023
head
...............................................................................................TGGCGACCAATACCCTTGGTC...................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................TTCTTGTCAGCACTTTACGGC..................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................................................................................................................TCCAGGACTGATTGTGACCC................................ 20 3 3 0.67 2 0 0 2 0 0 0 0
...................................GTTCAGCTGAATTAATT...................................................................................................................................................................................................... 17 0 2 0.50 1 0 0 0 1 0 0 0
..........................................................................................................................AGGATTTTTTTCTCAGCACTT........................................................................................................... 21 3 3 0.33 1 0 0 0 0 1 0 0
.................................................................................................................................................TGGCTCCGAGACAAACC........................................................................................ 17 2 8 0.13 1 1 0 0 0 0 0 0
.........................................................................................................................CCGGGTTTTATTGTCAGC............................................................................................................... 18 2 11 0.09 1 0 0 0 0 0 1 0
...................................GTTCAGCTGAATCAA........................................................................................................................................................................................................ 15 1 11 0.09 1 0 0 0 1 0 0 0
................................................................................................................GCTCGACGTAAGGGTTTTTT...................................................................................................................... 20 3 11 0.09 1 0 0 1 0 0 0 0
............................................................GGCTTCAGCCCCCGTCC............................................................................................................................................................................. 17 2 18 0.06 1 0 0 0 0 1 0 0
........................................................................................................................................................................................................CACGACTGATTGGGACCC................................ 18 3 20 0.05 1 0 0 0 0 0 0 1

Generated: 04/24/2015 at 01:37 AM