ID:

dsi_4222

 Coordinate:

3l:8241489-8241638 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-9.2 -9.1 -9.1 -9.0

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GTACTGTCGGCAAATATGGCGCCCGCTAGCAGTTGTTGTGCTGTCGTGTGGTACGTGTGGCTGGTCCAGAAAATTCTCTTTCGCTTTGAATAGGACTATTATTTAACTCAAATTCGGAACGAAAATATGCAGAAAGTGTGCCGCGAACAATGCTGTGATGGAAAAATATGAAAAGTGCTAGGGAAATTAGTTTTTTAATGGCGAATTTACGTTTTTCTCGGTGCCCAGCCAGATTTTCTACGCTTCTGTG
************************************************************************************((.....((.((..((((.....((.....(((...........(((.......)))...........))).....)).....))))...)).))...))****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
..............................AGTTGTTGTGCTGTCGTGTGG....................................................................................................................................................................................................... 21 0 1 4.00 4 1 0 1 2 0 0 0 0 0
.....................................GTGCTGTCGTGTGGTACG................................................................................................................................................................................................... 18 0 1 3.00 3 3 0 0 0 0 0 0 0 0
..............................AGTTGTTGTGCTGTCGTGTG........................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.....................................GTGCTGTCGTGTGGTACGT.................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TCCCAGCCAGATTTGCTGCGCTT..... 23 3 1 1.00 1 0 0 0 0 0 0 0 1 0
....................................................................................TTTGAATAGGACTATTATTTA................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................TTGTGCTGTCGTGTGGTA..................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................CGCTTTGAATAGGACTAT....................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................TGTGCTGTCGTGTGGTACG................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................GTTGTGCTGTCGTGTGG....................................................................................................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................TTTCGCTTTGAATAGGACTAT....................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....GTCGGCAAATATGGCGCCC.................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................GTGCTGTCGTGTGGTACGTGT................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................TGAAAAGTGCTAGGGA.................................................................. 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................AGCAGTTGTTGTGCTGTCGTG.......................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................CGCTTTGAATAGGACTATTATTTAA................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................TTCGGAACGAAAATATGCAGAAAGTGTGC............................................................................................................. 29 0 1 1.00 1 0 0 0 0 0 1 0 0 0
..............................AGTTGTTGTGCTGTCGTGTGGTA..................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................ATTTACGTTTTTCTCGGTGCC......................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................GTTGTGCTGTCGTGTGGTACGT.................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................TCTTTCGCTTTGAATGGGACT......................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................GTTGTGCTGTCGTGTGGTACGTGTG............................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................ATTAGTTTTTTAATGGCGAATTTACGTTT.................................... 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0
...................................................TACGTGTGGCTGGTCCAGAAAATTCTCTTTC........................................................................................................................................................................ 31 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................GTTGTTGTGCTGTCGT........................................................................................................................................................................................................... 16 0 2 0.50 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................GATGGAAAAATTTGAAATGT.......................................................................... 20 2 4 0.25 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................TGTGTCGCGAATAATGCTCT.............................................................................................. 20 3 6 0.17 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................ATGCTGTGATCGAAAA..................................................................................... 16 1 8 0.13 1 0 0 1 0 0 0 0 0 0
........................................................................................AATAGGACTGTTATT................................................................................................................................................... 15 1 10 0.10 1 0 0 0 0 0 1 0 0 0
......................................................................................TGAATAGGACGATCAT.................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1
........................................................GTAGCTGGTCCAGAGGATT............................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

CATGACAGCCGTTTATACCGCGGGCGATCGTCAACAACACGACAGCACACCATGCACACCGACCAGGTCTTTTAAGAGAAAGCGAAACTTATCCTGATAATAAATTGAGTTTAAGCCTTGCTTTTATACGTCTTTCACACGGCGCTTGTTACGACACTACCTTTTTATACTTTTCACGATCCCTTTAATCAAAAAATTACCGCTTAAATGCAAAAAGAGCCACGGGTCGGTCTAAAAGATGCGAAGACAC
******************************************************************((.....((.((..((((.....((.....(((...........(((.......)))...........))).....)).....))))...)).))...))************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 M024
male body		 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
............................................................................................................................................................................................................................AACGGGTCGGTCTAAAAGGTGC........ 22 2 1 2.00 2 2 0 0 0 0 0 0
............................................................................................................................................................................................................................CACGGGTCGGTCTAAAAGATG......... 21 0 1 2.00 2 0 2 0 0 0 0 0
...........................................................................................................................................CGGCGCTTGTTACGACACTAC.......................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
............................................................................................................................................................................................................................TACGGGTCGGTCTAAAAGATG......... 21 1 1 1.00 1 1 0 0 0 0 0 0
......................GGCGATCGTCAACAACACG................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0
............................................................................................................................................................................................................................TACGGGTCGGTCTGAAAGAT.......... 20 2 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................................GGTCGGTCTAGAAGATGCGAA..... 21 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................ATGCAAAAAGAGCCACGGGTC...................... 21 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................GAGTTTCAGACTGGCTTTTAT........................................................................................................................... 21 3 3 0.67 2 0 0 0 0 2 0 0
.............................................................................................................................................................................................................................ACGGGTCGGTCTGAAAGGT.......... 19 2 3 0.67 2 2 0 0 0 0 0 0
...........................................................CGGCCAGGTCTTTTGAGAGA........................................................................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................CAACGGTTCGGTCTAAAAGAG.......... 21 3 4 0.25 1 0 0 1 0 0 0 0
................TTTGCGGGCGATCGTCAACAA..................................................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0
..........................................................................................................GTGTTTAAGCCTTGCT................................................................................................................................ 16 1 7 0.14 1 0 0 0 0 0 1 0
................ACCTCGGGGGATCGTC.......................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1

Generated: 04/24/2015 at 10:46 AM