dsi_4212

exon [2r_7981463_7981556_-]; five_prime_UTR [2r_7981463_7981556_-]; intron [2r_7979890_7981462_-]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ATTCTCGCAAAAAACAATCAGTACCCAATTATTAAATAGTTGCTAACAAGGTGAGTTTGCAACGGACGCGAAAAAAGAAGATCAAGGGCTAGGAAACGCGAATATTGGGTGAAGGTTAAGCTGAAGTTGAAGTTAATTGCGATAATTATACGCTTTTATAATTTATTGGTTTGCTTACGCTTTAGAACCAGATTTAGATATATTACACACAATTGCGTGTTACCAAAAAAAAAAAACCAGTTACCGCAAA ***********************************************************************........((((.((((((...((.(((...))).)).....)).))))....)))).....*****************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR902009 testis	M053 female body	M024 male body
.........................................................................AAAGAAGATCAAGGGCTAGGA............................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
.........................................................................AAAGAAGATCAAGGGCTAGGAA...........................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................GTTAAGCTGAAGTTGAAGTTA...................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0
.........................................................................................................TGGCTGGAGGTTAAGCT................................................................................................................................	17	2	20	0.60	12	0	12	0	0	0	0	0
................................................................................................................AGGTTAAGCTGAAGA...........................................................................................................................	15	1	12	0.58	7	0	5	2	0	0	0	0
..............................................................CGGACGCGAAAAAAAA............................................................................................................................................................................	16	1	8	0.38	3	0	1	2	0	0	0	0
..............................................................CGGACGCGAAAAAAAAA...........................................................................................................................................................................	17	1	4	0.25	1	0	1	0	0	0	0	0
..............................................................CGGACGCGAAAAAAG.............................................................................................................................................................................	15	0	5	0.20	1	0	1	0	0	0	0	0
..........................................................................AAGAAGATAAAGGGCTTGTA............................................................................................................................................................	20	3	15	0.07	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................................GTGTTATCACAAAAAAAAAA..............	20	2	16	0.06	1	0	0	0	0	0	1	0
..........................................................................ACGAAGATCAAGGGCCGGG.............................................................................................................................................................	19	3	19	0.05	1	0	0	0	0	0	0	1
................................................................................................................................................................ATGTATTGGTTTGCTTGGGC......................................................................	20	3	20	0.05	1	1	0	0	0	0	0	0
...............................................................................................................TAGGTTAAGCTGAAGA...........................................................................................................................	16	2	20	0.05	1	0	0	1	0	0	0	0
..............................................................................................................................................................TCATTTATTGGTTTGCGT..........................................................................	18	2	20	0.05	1	0	0	0	1	0	0	0
................................................................GAAGTGAAAAAAGAAGAT........................................................................................................................................................................	18	2	20	0.05	1	0	0	0	1	0	0	0

TAAGAGCGTTTTTTGTTAGTCATGGGTTAATAATTTATCAACGATTGTTCCACTCAAACGTTGCCTGCGCTTTTTTCTTCTAGTTCCCGATCCTTTGCGCTTATAACCCACTTCCAATTCGACTTCAACTTCAATTAACGCTATTAATATGCGAAAATATTAAATAACCAAACGAATGCGAAATCTTGGTCTAAATCTATATAATGTGTGTTAACGCACAATGGTTTTTTTTTTTTGGTCAATGGCGTTT *****************************************************************************************************************........((((.((((((...((.(((...))).)).....)).))))....)))).....***********************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries
...................................................................................................................................................................................AAAATCTTGATCTAAATCT....................................................	19	2	3	0.33	1	0	1	0	0
.................................................................................................................................................................................GCGAGATCTTGGCCTAAA.......................................................	18	2	4	0.25	1	1	0	0	0
...........................................................................................................................................................................................................................AATGGTTTTACTTTGTTGGTC..........	21	3	8	0.13	1	1	0	0	0
.........................................................................TTGCTTCTAGTTCCCAA................................................................................................................................................................	17	2	11	0.09	1	0	0	1	0
...............................................................................CCAGTTACCGATCCTTT..........................................................................................................................................................	17	2	17	0.06	1	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2r:7981263-7981512 -	dsi_4212	ATTCTCGCA------------------------------------------------AAAAAC--------AATCAGTACCCAATTATTAAATAGTTGCTAACAAGGTGAGTTTGCAACGGAC----GCG-----A----AAAA-A--GAAGATCAAGG-GCTAGGAAACGCGAATATTGGGTGAAGGTTAA-------------GC------TGAAGTTGAAG----------TTAAT------------T-GCGATAATTAT-------------------A-CGC------TTTTATAAT---TTATTG-----------------------GTTTGCTTACGCT-----------------------TTAGAACCAGATTT--AGAT--------ATATTA--CACAC-AATTGCGTGTT-ACCAAAAAAA-----------AAAAACCAGTTACCGCAAA
droSec2	scaffold_1:4828017-4828266 -		ATTCTCGCA------------------------------------------------AAAAAC--------AATCAGTACCCAATTATTAAATAGTTGCTAACAAGGTGAGTTTGCAACGGAC----GCG-----A---AAAAA-A--GAAGATCAAGG-GCTAGGAATTGCGAATACTGGGTGAAGGTTAA-------------GC------TGAAGTTGAAG----------TTAAT------------T-GCGATAATTAT-------------------A-CGC------TTTCATAAT---TCATTG-----------------------GTTTGCTTACGCT-----------------------TTAGAACCAGATTT--AGAT--------ATATTA--CACAC-AATTGCGTGTT-ACCAAAAAA------------AAAAACCAGTTTCCGCAAA
dm3	chr2R:7271314-7271569 -		ATTCTCGCA------------------------------------------------AAAAAC--------AATCAGTACCCAATTATAAAATAGTTGCTAACAAGGTGAGTTTGCAACGGAC----GCG-----A-A-AAAAA-A--GAAGATCAAGG-GCTAGTAATCGAGAATATTGGGTGAAGGTTAA-------------GC------TGAAGTTGAAG----------TTACT------------T-GAGTTAATTGT-------------------AATTGTTAATTGTTCATAAT---TTATTG-----------------------GTTTGCTTACATT-----------------------TTAGAACCTGATTT--AGAT--------ATATTA--CCCAC-AATTGCGTGTT-ACCAAAAA--------------GAAACCAGTTACCGCAAA
droEre2	scaffold_4845:18523113-18523357 +		ATACTCGCA------------------------------------------------A-AAAC--------AATCAGTACCCAATTATTAAATAGTTGCTAACAAGGTGAGTTTGCAACGGAC----GCG-----A---AAAAA-A--GAAGATCAAGG-GCTAGAAATCGAGAATATTGGGTGAAGGTTAA-------------GC------TGAAGTTACAT----------TTAAT------------T-GCAATAATTGT-------------------A-CGG------TTTCATTAT---TCCTTG-----------------------GTTTGCTTACACC-----------------------TTAGAACAAGATTT--AGAT--------ATATTA--CCCAC-AATGGCGTATT-ACCAAA----------------AAAACCAGTTACCGCAAA
droYak3	2R:9688542-9688785 +		ATTCTCGCA------------------------------------------------GAAAGC--------AATCAGTACCCAATTATTAAATAGTTGCTAACAAGGTGAGTTTGCAACGGAC----GCG-----A----AAAA-A--GAAGATCAAGG-GCTAGAAATCGGGAATATTAGGTGAAGGTTAA-------------GC------TGAAGTGCAAT----------TAAAT------------G-GCAATAATTGT-------------------A-CGG------TTTTATTAT---TTATTG-----------------------CTTTGCTTACACT-----------------------TTAGAACCAGATTT--AGAT--------ATACTA--CCCAC-AATGGCGTATT-ACCAAA----------------AAAACCAGTTACCGCAA-
droEug1	scf7180000409462:1235161-1235418 +		AATTTCGCA------------------------------------------------AAAAAC--------AATCACTACCCAATTATTAAATAGTTGCTAACAAGGTGAGTACGCTGCTGACAGCAGTG-----A----AAAA-T--CAAGAACAAGG-GCTAGAAATCGGGATTAATGGGTGAAGGTTAA-------------GC------TGAAGTTAAGA--------------------------CTT-TG-TGATTAA-------------------A-CGGT-----TTTCATTAT---TTATTGG----------------------TTTTGCTTACTGT-----------------------TTAGAACCAGATTT--ACATACAAACGTATATTA--CCTGGAGATTGCGTATT-ACCAAAAAC------------AAAAACCAGTTACCCCAA-
droBia1	scf7180000301754:1018012-1018258 +		ATTCTCGCA------------------------------------------------AAAAAC--------AATAACTACCCAATTATTAAACACTTGCTAACAAGGTGAGTGCGCAGCTTACA---GCT-----A---AAAAA-A--GAGGAGCAAGG-GCTAGAAATCGGGAATACTGGGTGAAGGTTAA-------------GC------TGAAGTTGAAA---------TTGAAA-----------TTT-TG-TAATTAA-------------------A-CGG------TTTCATTAT---CTAGTG-----------------------CTTCGCTTACTCT-----------------------TAAGAACCAGATTC--AGAT--------GTATTA--CCTGT-GATTGCGTGCT-ACCAAC----------------AAAACCAGTTACCGCGA-
droTak1	scf7180000414560:285514-285758 +		ATTCTCGCG-------------------------------------AA---------AAAAAC--------AATAACTACCCAATTATTAAATAGTTGCTAACAAGGTGAGAGAAAAACAAAA------T-----A---AAATA-A--TAAGAACAAGGGGCTAGAAATCGGGATTAATGGGTGAAGGTTAC-------------GC------TGAAGTTGAAA--------------------------TTG-TG-CATTTAA-------------------A-TGGT-----TTTCATTAT---TTATGG-----------------------TTTTGCTTACTCT-----------------------TTAGAACCAGATTT--AGAT--------ATATTA--CCTGA-GATTGCGTATT-ACCAAAA-T------------GAAAACCAGTTACCGCAA-
droEle1	scf7180000491214:2718633-2718891 -		ATTCGCGCA-------------------------------------AAAAC-----CGAAAAC--------AATCACTACCCAATTATTAAATAGTTGCTAACAAGGTGAGTGCGCAATTGGCA----GGCAACAAAA-GAAAA-A--GAATACCAAGG-GCTAGAAATCGGGAGTAATGGGTGAAGGTTAA-------------GC------TGAAGTTGAAA--------------------------TTC-TG-TAATTAA-------------------AACGT------TTTCATTAT---TTATTT-----------------------GCTTGCCGACTCA-----------------------TTAGAACCAGATTT--AGAC--------TTATTA--CCTGG-AATTGCTTATT-ACCAAAAAC------------AAAAACCAGTTACCGCAAA
droRho1	scf7180000779263:288781-289031 +		ATTCTCGCA------------------------------------------------AAAAAC--------AATCACTACCCAATTATTAAGTACTTGCTAACAAGGTGAGTGCGCAACTGGCA----GA--ATAAAACAAAAA-A--TAAGAACAAGG-GCTAGAAATCGGGAATTTTGGGTGAAGGTTAA-------------GC------TCAAGTTTAAA--------------------------TTG-TG-TAATTAA-------------------GACGG------TTTCTTAAT---TTATTT-----------------------GTTTGCTTACTCT-----------------------TTAGAACCAAATTT--AGAT--------ATATTA--CCTGT-GATTGCATATT-ACCAAAAAC------------AAAAACCAGTTACCGCAA-
droFic1	scf7180000453773:205656-205882 -		ATTCTCGCA------------------------------------------------AAAAAC--------AATTACTACCCAATTATTAAATAGTTGCTAACAAGGTGAGTGCGCAACTGGCA----GA--ACAA---AAAAA-A--GAAGAACAAGG-GCTAGAAATCTGGAAT--------AAGGTCAA-------------GC------TGAAGTTGAA---------------------------TTG-TG-TAATTAA-------------------A----------TTTG--AAT---TTATTC-----------------------GTTTGCTCGATTA-----------------------TTAAAACCAGATAT--AGAT--------ATATTA--CCTGG-GATTGCGTATT-ACCAA------------------AAACCAGTTACCGCAA-
droKik1	scf7180000302476:104569-104833 -		G---------------------------------------------------------AAAAA--------TATAACTACTCAATTATTAAATAGTTGCTAACAAGGTGAGTGCGCTA----------------------AAAAATACAAAGAACAAGT-GCCAAGGATTGGGAAAAATGGGTGAAGGTGAA-------------GA------TAAAGTCGGGA----------TTA-------------TTG-CG-CAATTAA-------------------AATGGG-------TCGCTGC---TGC-------TGG----------------TTTCG----TTTTTTAATGCAGAACAAACAGTCTTTGTTGAGCCAGCTTTTAATAT--------TTATTA--CCTGA-GAATTCGTATT-ACCAAGAAAAAAATAAGAAACCAAAACCAGTTAGCGTAAA
droAna3	scaffold_13266:973757-974029 -		ATTCCCACA------------------------------------------------AAAAACAAAAAAACAGTAACTATCCAATTATTAAATAGTTGCTAAAAAGGTGAGTGCTTATCGTAA----CTG-----A----GG-AAT--AAGTTACAAGT-GCCAGGGAATAAAACGAA------AAGTTAAA-------------GCCATTCATGGA------T----------TTA-TTCTAAA-----CGG-TG-TTATGAAATTTTAATCGATTCG----A-CTC------CTACATGAT---GTATTGATTTTTG----------------T----TTCGTTTT-----------------------TTACAACCAG-TTG--AAAT--------TTATTA--TTTGC-G-TTTCTTATTGGCCAAAAAC------------AAAAACCAGTTACCTCGAA
droBip1	scf7180000396730:1978700-1978975 -		ATTCCCACA-------------------------------------CAAATATATACAAATAT--------AATAACTATCCAATTATTAAATAGTTGCTAACAAGGTGAGTGCTCAGCGTAA----CTG-----A----CG-AAT--AAGTTACAAGT-GTCAGTAAATGAAACGAA------AAGTTTAA-------------GCCATTGATGGATTCTAAG--------------------------TAG-TG-TGATGATATTTAAATCGATTCGGTACACCCC------CCACTTGAT---ATATTGATTTTTG----------------CTT----CGTTTT-----------------------TTACAACCAG-TTG--AAAT--------TTATTA--TTTGA--GTTTCTTATTGGCCAAAAAC------------AAAAACCAGTTACCTCGA-
dp5	3:13505179-13505384 +		TTTTTCGGG------------------------------------------------AAATAGAAGG----AATCAGAAC-----TAAGTACTAGTTGCTAACAAGGTGAGTACCCAGAC---------G-----A------------AAAGAACAAGT-GTGAG-----TGGAACAATTGACGAAGGTGAAGATAATTAATAAAGC------TGAAACGTAGA----------TCAATGGGAAATGAGATTT----------------------------------------------------------------------------------------------------------------------TCTGAGCCAGTTTT--A-AT--------TTATGGACTCTGA-TATTTCTTATT-----------------------GAAACCAGTTACCGCAG-
droPer2	scaffold_2:8114922-8115127 -		TTTTTCGGG------------------------------------------------AAATAGAAGG----AATCAGAAC-----TAAGTACTAGTTGCTAATAAGGTGAGTACCCAGAC---------G-----A------------AAAGAACAAGT-GTGAG-----TGGAACAATTGACGAAGGTGAAGATAATTAATAAAGC------TGAAACGTAGA----------TCAATGGGAAATGAGATTT----------------------------------------------------------------------------------------------------------------------TCTGAGCCAGTTTT--A-AT--------TTATGGACTCTGA-TATTTCTTATT-----------------------GAAACCAGTTACCGCAA-
droVir3	scaffold_12875:13232293-13232555 +		ATTAAAGCGGTGAATTTAGTATAGCTGTGAATCAGTTTACAATTAACTAATAAATAC--------------AAAGAGAA------CAAGCAACAGCTGCAAACTAGGTAAGCGCACACAACACA---ATT-----A---AAA------CTAAAT------------------------------------------------------------AAA------TTTCCACAAAATAACT------------T-TTAATAACTGC-------------------A-CCT------GGTTATAAATGCGCAAGAGCATTTGCTTCGAACGTTTAACGAAAAGAACACTTC-----------------------TGAAAATTCGATTT--ATAA--------TTGTTC--ACTGA-A------------ACAATAAT------------CAAAACCAGTTTTCGCAGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

ATTCTCGCA------------------------------------------------AAAAAC--------AATCAGTACCCAATTATTAAATAGTTGCTAACAAGGTGAGTTTGCAACGGAC----GCG-----A----AAAA-A--GAAGATCAAGG-GCTAGGAAACGCGAATATTGGGTGAAGGTTAA-------------GC------TGAAGTTGAAG----------TTAAT------------T-GCGATAATTAT-------------------A-CGC------TTTTATAAT---TTATTG-----------------------GTTTGCTTACGCT-----------------------TTAGAACCAGATTT--AGAT--------ATATTA--CACAC-AATTGCGTGTT-ACCAAAAAAA-----------AAAAACCAGTTACCGCAAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................................................................................AA-A--GAAGATCAAGG-GCTAGGA..........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................AA-A--GAAGATCAAGG-GCTAGGAA.........................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................GTTAA-------------GC------TGAAGTTGAAG----------TTA....................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................AGGTTAA-------------GC------TGAAGA......................................................................................................................................................................................................................................................	15	12	0.58	7	0	0	0	0	0	0	2	5	0	0	0	0	0	0	0	0	0
......................................................................................................................CGGAC----GCG-----A----AAAA-A--G............................................................................................................................................................................................................................................................................................................................	15	5	0.20	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

ATTCTCGCA------------------------------------------------AAAAAC--------AATCAGTACCCAATTATTAAATAGTTGCTAACAAGGTGAGTTTGCAACGGAC----GCG-----A---AAAAA-A--GAAGATCAAGG-GCTAGGAATTGCGAATACTGGGTGAAGGTTAA-------------GC------TGAAGTTGAAG----------TTAAT------------T-GCGATAATTAT-------------------A-CGC------TTTCATAAT---TCATTG-----------------------GTTTGCTTACGCT-----------------------TTAGAACCAGATTT--AGAT--------ATATTA--CACAC-AATTGCGTGTT-ACCAAAAAA------------AAAAACCAGTTTCCGCAAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...CTCGCA------------------------------------------------AAAAAC--------AATCAGTA..................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0

dm3

ATTCTCGCA------------------------------------------------AAAAAC--------AATCAGTACCCAATTATAAAATAGTTGCTAACAAGGTGAGTTTGCAACGGAC----GCG-----A-A-AAAAA-A--GAAGATCAAGG-GCTAGTAATCGAGAATATTGGGTGAAGGTTAA-------------GC------TGAAGTTGAAG----------TTACT------------T-GAGTTAATTGT-------------------AATTGTTAATTGTTCATAAT---TTATTG-----------------------GTTTGCTTACATT-----------------------TTAGAACCTGATTT--AGAT--------ATATTA--CCCAC-AATTGCGTGTT-ACCAAAAA--------------GAAACCAGTTACCGCAAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................ATATTA--CCCAC-AATTGCGTGTT-ACC.....................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................A-AAAAA-A--GAAGATCAAGG-GCTAGT...........................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................GTTTGCAACGGAC----GCG-----A-A-AA....................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................CG-----A-A-AAAAA-A--GAAGATCAAGG-GCTAG............................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................GCTAACAAGGTGAGTTTGC.............................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................CAGTACCCAATTATAAAATAGT.................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................GTACCCAATTATAAAATAGTTG...............................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................AGG-GCTAGTAATCGAGAATATTGG............................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................GTTTGCAACGGAC----GCG-----A-A-A.....................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GAAGGTTAA-------------GC------TGAAGTTGAAG----------T......................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................A--GAAGATCAAGG-GCTAGTAAT........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................G-----A-A-AAAAA-A--GAAGATCAAGG-GC...............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................AATCAGTACCCAATTATAAAAT....................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................TACCCAATTATAAAATAGTTGC..............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................ATTT--AGAT--------ATATTA--CCCAC-AA..................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................AC-AATTGCGTGTT-ACCAAAAA--------------GAAA..............	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................ATCAGTACCCAATTATAAAATAGT.................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TAATCGAGAATATTGGGTGA........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

ATACTCGCA------------------------------------------------A-AAAC--------AATCAGTACCCAATTATTAAATAGTTGCTAACAAGGTGAGTTTGCAACGGAC----GCG-----A---AAAAA-A--GAAGATCAAGG-GCTAGAAATCGAGAATATTGGGTGAAGGTTAA-------------GC------TGAAGTTACAT----------TTAAT------------T-GCAATAATTGT-------------------A-CGG------TTTCATTAT---TCCTTG-----------------------GTTTGCTTACACC-----------------------TTAGAACAAGATTT--AGAT--------ATATTA--CCCAC-AATGGCGTATT-ACCAAA----------------AAAACCAGTTACCGCAAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....................................................................................TATTAAATAGTTGCTAAC..........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0
............................................................AAC--------AATCAGTACCCAATTATTAAATAGTT................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0

droYak3

ATTCTCGCA------------------------------------------------GAAAGC--------AATCAGTACCCAATTATTAAATAGTTGCTAACAAGGTGAGTTTGCAACGGAC----GCG-----A----AAAA-A--GAAGATCAAGG-GCTAGAAATCGGGAATATTAGGTGAAGGTTAA-------------GC------TGAAGTGCAAT----------TAAAT------------G-GCAATAATTGT-------------------A-CGG------TTTTATTAT---TTATTG-----------------------CTTTGCTTACACT-----------------------TTAGAACCAGATTT--AGAT--------ATACTA--CCCAC-AATGGCGTATT-ACCAAA----------------AAAACCAGTTACCGCAA-	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................................................................CAGTACCCAATTATTAAATAGTTGCT.............................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................AATCAGTACCCAATTATTAAATAGT.................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................GCTAACAAGGTGAGTTTGCAACGG........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

AATTTCGCA------------------------------------------------AAAAAC--------AATCACTACCCAATTATTAAATAGTTGCTAACAAGGTGAGTACGCTGCTGACAGCAGTG-----A----AAAA-T--CAAGAACAAGG-GCTAGAAATCGGGATTAATGGGTGAAGGTTAA-------------GC------TGAAGTTAAGA--------------------------CTT-TG-TGATTAA-------------------A-CGGT-----TTTCATTAT---TTATTGG----------------------TTTTGCTTACTGT-----------------------TTAGAACCAGATTT--ACATACAAACGTATATTA--CCTGGAGATTGCGTATT-ACCAAAAAC------------AAAAACCAGTTACCCCAA-	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATTCTCGCA------------------------------------------------AAAAAC--------AATAACTACCCAATTATTAAACACTTGCTAACAAGGTGAGTGCGCAGCTTACA---GCT-----A---AAAAA-A--GAGGAGCAAGG-GCTAGAAATCGGGAATACTGGGTGAAGGTTAA-------------GC------TGAAGTTGAAA---------TTGAAA-----------TTT-TG-TAATTAA-------------------A-CGG------TTTCATTAT---CTAGTG-----------------------CTTCGCTTACTCT-----------------------TAAGAACCAGATTC--AGAT--------GTATTA--CCTGT-GATTGCGTGCT-ACCAAC----------------AAAACCAGTTACCGCGA-	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATTCTCGCG-------------------------------------AA---------AAAAAC--------AATAACTACCCAATTATTAAATAGTTGCTAACAAGGTGAGAGAAAAACAAAA------T-----A---AAATA-A--TAAGAACAAGGGGCTAGAAATCGGGATTAATGGGTGAAGGTTAC-------------GC------TGAAGTTGAAA--------------------------TTG-TG-CATTTAA-------------------A-TGGT-----TTTCATTAT---TTATGG-----------------------TTTTGCTTACTCT-----------------------TTAGAACCAGATTT--AGAT--------ATATTA--CCTGA-GATTGCGTATT-ACCAAAA-T------------GAAAACCAGTTACCGCAA-	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATTCGCGCA-------------------------------------AAAAC-----CGAAAAC--------AATCACTACCCAATTATTAAATAGTTGCTAACAAGGTGAGTGCGCAATTGGCA----GGCAACAAAA-GAAAA-A--GAATACCAAGG-GCTAGAAATCGGGAGTAATGGGTGAAGGTTAA-------------GC------TGAAGTTGAAA--------------------------TTC-TG-TAATTAA-------------------AACGT------TTTCATTAT---TTATTT-----------------------GCTTGCCGACTCA-----------------------TTAGAACCAGATTT--AGAC--------TTATTA--CCTGG-AATTGCTTATT-ACCAAAAAC------------AAAAACCAGTTACCGCAAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATTCTCGCA------------------------------------------------AAAAAC--------AATCACTACCCAATTATTAAGTACTTGCTAACAAGGTGAGTGCGCAACTGGCA----GA--ATAAAACAAAAA-A--TAAGAACAAGG-GCTAGAAATCGGGAATTTTGGGTGAAGGTTAA-------------GC------TCAAGTTTAAA--------------------------TTG-TG-TAATTAA-------------------GACGG------TTTCTTAAT---TTATTT-----------------------GTTTGCTTACTCT-----------------------TTAGAACCAAATTT--AGAT--------ATATTA--CCTGT-GATTGCATATT-ACCAAAAAC------------AAAAACCAGTTACCGCAA-	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATTCTCGCA------------------------------------------------AAAAAC--------AATTACTACCCAATTATTAAATAGTTGCTAACAAGGTGAGTGCGCAACTGGCA----GA--ACAA---AAAAA-A--GAAGAACAAGG-GCTAGAAATCTGGAAT--------AAGGTCAA-------------GC------TGAAGTTGAA---------------------------TTG-TG-TAATTAA-------------------A----------TTTG--AAT---TTATTC-----------------------GTTTGCTCGATTA-----------------------TTAAAACCAGATAT--AGAT--------ATATTA--CCTGG-GATTGCGTATT-ACCAA------------------AAACCAGTTACCGCAA-	Size	Hit Count	Total Norm	Total
No Reads

droKik1

G---------------------------------------------------------AAAAA--------TATAACTACTCAATTATTAAATAGTTGCTAACAAGGTGAGTGCGCTA----------------------AAAAATACAAAGAACAAGT-GCCAAGGATTGGGAAAAATGGGTGAAGGTGAA-------------GA------TAAAGTCGGGA----------TTA-------------TTG-CG-CAATTAA-------------------AATGGG-------TCGCTGC---TGC-------TGG----------------TTTCG----TTTTTTAATGCAGAACAAACAGTCTTTGTTGAGCCAGCTTTTAATAT--------TTATTA--CCTGA-GAATTCGTATT-ACCAAGAAAAAAATAAGAAACCAAAACCAGTTAGCGTAAA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ATTCCCACA------------------------------------------------AAAAACAAAAAAACAGTAACTATCCAATTATTAAATAGTTGCTAAAAAGGTGAGTGCTTATCGTAA----CTG-----A----GG-AAT--AAGTTACAAGT-GCCAGGGAATAAAACGAA------AAGTTAAA-------------GCCATTCATGGA------T----------TTA-TTCTAAA-----CGG-TG-TTATGAAATTTTAATCGATTCG----A-CTC------CTACATGAT---GTATTGATTTTTG----------------T----TTCGTTTT-----------------------TTACAACCAG-TTG--AAAT--------TTATTA--TTTGC-G-TTTCTTATTGGCCAAAAAC------------AAAAACCAGTTACCTCGAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................................................................................................................................................................................................................................................................TTACAACCAG-TTG--AAAT--------TTATTA--TTTGC-....................................................	28	1	16.00	16	1	14	1	0	0	0
......................................................................................................AAAGGTGAGTGCTTATCGTAA----CTG-----A----G....................................................................................................................................................................................................................................................................................................................................	26	1	12.00	12	4	1	3	0	2	2
.........................................................................................................................................................................TAAAACGAA------AAGTTAAA-------------GCCATTCATG..........................................................................................................................................................................................................................................................	27	1	12.00	12	5	5	1	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................TTACAACCAG-TTG--AAAT--------TTATTA--TT........................................................	25	1	11.00	11	2	9	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTATTGGCCAAAAAC------------AAAAACCAGT.........	29	1	8.00	8	2	6	0	0	0	0
..................................................................................................................................................................................................................................................AAA-----CGG-TG-TTATGAAATTTTAATCGAT.............................................................................................................................................................................................	27	1	8.00	8	1	3	3	0	0	1
........................................................................................................................TAA----CTG-----A----GG-AAT--AAGTTACAAGT-GCC..............................................................................................................................................................................................................................................................................................................	26	1	7.00	7	1	6	0	0	0	0
.................................................................................................................................................T--AAGTTACAAGT-GCCAGGGAATAAAAC..................................................................................................................................................................................................................................................................................................	27	1	7.00	7	0	1	4	0	0	2
...........................................................................................................TGAGTGCTTATCGTAA----CTG-----A----GG-AA................................................................................................................................................................................................................................................................................................................................	24	1	7.00	7	3	2	0	0	2	0
.................................................................................................................................................................................................................................................TAAA-----CGG-TG-TTATGAAATTTTAATC................................................................................................................................................................................................	25	1	6.00	6	0	6	0	0	0	0
......................................................................................................AAAGGTGAGTGCTTATCGTAA----CTG-----A----.....................................................................................................................................................................................................................................................................................................................................	25	1	5.00	5	1	0	3	0	0	1
..................................................................................................................................................................................................................................................AAA-----CGG-TG-TTATGAAATTTTAATC................................................................................................................................................................................................	24	1	5.00	5	0	4	1	0	0	0
..........................................................................................................................................................................................................................................................................TTTAATCGATTCG----A-CTC------CTACATGAT---G..............................................................................................................................................................	27	1	5.00	5	5	0	0	0	0	0
.......................................................................................................AAGGTGAGTGCTTATCGTAA----CTG-----A----GG-..................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	4	0	0	0	0	0
........................................................................................TAAATAGTTGCTAAAAAGGTGAGTGC...............................................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	1	3	0	0	0	0
...................................................................................................TAAAAAGGTGAGTGCTTATCGTAA----CT................................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	3	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TACAACCAG-TTG--AAAT--------TTATTA--TTTGC-G-..................................................	28	1	4.00	4	1	3	0	0	0	0
.......................................................................................................AAGGTGAGTGCTTATCGTAA----CTG-----A----G....................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	1	0	3	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTATTGGCCAAAAAC------------AAAAACC............	26	1	4.00	4	0	4	0	0	0	0
..........................................................................................................................................................CAAGT-GCCAGGGAATAAAACGAA------AAGT.....................................................................................................................................................................................................................................................................................	27	1	3.00	3	1	2	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTATTGGCCAAAAAC------------AAAAACCAGC.........	27	1	3.00	3	0	3	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTATTGGCCAAAAAC------------AAAAACCAGT.........	27	1	3.00	3	0	3	0	0	0	0
........................................................................................TAAATAGTTGCTAAAAAGGTGAGTGCT..............................................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	1	1	1	0	0	0
.......................................................................................................................................................................................................................................................................................................TACATGAT---GTATTGATTTTTG----------------T----TTCGTT.......................................................................................................................	28	1	3.00	3	0	2	1	0	0	0
......................................................................................................AAAGGTGAGTGCTTATCGTAA----CTG-----A----GG-..................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	1	1	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TACAACCAG-TTG--AAAT--------TTATTA--TTTGC-....................................................	27	1	3.00	3	0	3	0	0	0	0
..................................................................................................................................................................CAGGGAATAAAACGAA------AAGTTAAA-------------GCC.................................................................................................................................................................................................................................................................	27	1	3.00	3	0	3	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TACATGAT---GTATTGATTTTTG----------------T----TTCGT........................................................................................................................	27	1	3.00	3	1	1	0	0	1	0
.....................................................................................TATTAAATAGTTGCTAAAAAGGTGAG..................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	2	0	0	0	1	0
...............................................................................................................................................................................................................................................................................TCGATTCG----A-CTC------CTACATGAT---GTATT..........................................................................................................................................................	26	1	3.00	3	2	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTATTGGCCAAAAAC------------AAAAACCAGT.........	28	1	3.00	3	1	2	0	0	0	0
...................................................................................................TAAAAAGGTGAGTGCTTATCGTAA----C.................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	1	0	0	1	1
........................................................................................................................................................TACAAGT-GCCAGGGAATAAAACGAA------.........................................................................................................................................................................................................................................................................................	25	1	3.00	3	1	0	0	0	0	2
.........................................................................................................................................................................................................................................................................TTTTAATCGATTCG----A-CTC------CTACATGA...................................................................................................................................................................	26	1	3.00	3	0	3	0	0	0	0
....................................................................................................................................................AAGTTACAAGT-GCCAGGGAATAAAAC..................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	1	1	0	0	0
.......................................................................................................................................................................................................................GA------T----------TTA-TTCTAAA-----CGG-TG-TTATGAAAT.......................................................................................................................................................................................................	27	1	2.00	2	1	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................TC------CTACATGAT---GTATTGATTTTTG----------------T----T............................................................................................................................	26	1	2.00	2	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................TTACAACCAG-TTG--AAAT--------TTATTA--TTTGC-G-..................................................	29	1	2.00	2	1	1	0	0	0	0
.................................................................................................................................................T--AAGTTACAAGT-GCCAGGGAATAAAA...................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	1	0	0	0	1
...............................................................................................................................................................................................................................................................................TCGATTCG----A-CTC------CTACATGAT---GTATTGA........................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TACATGAT---GTATTGATTTTTG----------------T----TTCGC........................................................................................................................	27	1	2.00	2	0	2	0	0	0	0
..............................................................................................................................................................T-GCCAGGGAATAAAACGAA------AAGTTAAA-------------....................................................................................................................................................................................................................................................................	27	1	2.00	2	1	0	0	0	1	0
.............................................................................................................................................G-AAT--AAGTTACAAGT-GCCAGGGAA........................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................TACAACCAG-TTG--AAAT--------TTATTA--TT........................................................	24	1	2.00	2	1	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TT-----------------------TTACAACCAG-TTG--AAAT--------TTATTA--TT........................................................	27	1	2.00	2	0	2	0	0	0	0
........................................................................................................................................................................................................................................................................................................ACATGAT---GTATTGATTTTTG----------------T----TTCGT........................................................................................................................	26	1	2.00	2	0	0	1	0	1	0
.......................................................................................................AAGGTGAGTGCTTATCGTAA----CTG-----A----GG-AA................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................................TTCATGGA------T----------TTA-TTCTAAA-----CGG-TG-T...............................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	2	0
.............................................................................................................................................G-AAT--AAGTTACAAGT-GCCAGGGAATA......................................................................................................................................................................................................................................................................................................	26	1	2.00	2	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTATTGGCCAAAAAC------------AAAAACC............	25	1	2.00	2	1	1	0	0	0	0
............................................................................................................GAGTGCTTATCGTAA----CTG-----A----GG-AAT--AAG..........................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	1	0	1	0	0	0
..................................................................................................................................................................CAGGGAATAAAACGAA------AAGTTAAA-------------GC..................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0
........................................................................................TAAATAGTTGCTAAAAAGGTGAGTG................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................T--AAGTTACAAGT-GCCAGGGAATA......................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................TACAAGT-GCCAGGGAATAAAACGAA------AAGT.....................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................G-AAT--AAGTTACAAGT-GCCAGGGA.........................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................CTACATGAT---GTATTGATTT.....................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.........................................................................................AAATAGTTGCTAAAAAGGTGAGTGC...............................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................GAAATTTTAATCGATTCG----A-CTC------CTACAT.....................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................CGAA------AAGTTAAA-------------GCCATTCATGG.........................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................CTG-----A----GG-AAT--AAGTTACAAGT-GCC..............................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................G-----A----GG-AAT--AAGTTACAAGT-GCCAGGG..........................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CATGAT---GTATTGATTTTTG----------------T----TTCGC........................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTATTGGCCAAAAAC------------AAAAACCAG..........	28	1	1.00	1	0	1	0	0	0	0
.........................................................................................AAATAGTTGCTAAAAAGGTGAG..................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCAAAAAC------------AAAAACCAGTTACCTCG..	28	1	1.00	1	1	0	0	0	0	0
............................................................................................................GAGTGCTTATCGTAA----CTG-----A----GG-AAT--.............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..............................................................................................GTTGCTAAAAAGGTGAGTG................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................AAA-----CGG-TG-TTATGAAATTTTAATCGA..............................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.TTCCCACA------------------------------------------------AAAAACAAAAAAACAGTAAC....................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
..........................................................................................AATAGTTGCTAAAAAGGTGAGTGCT..............................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCAAAAAC------------AAAAACCAGTTACCTC...	28	1	1.00	1	1	0	0	0	0	0
...............................................................................................................TGCTTATCGTAA----CTG-----A----GG-AAT--AAGTTA.......................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................TTACAAGT-GCCAGGGAATAAAACGAA------.........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................TCG----A-CTC------CTACATGAT---GTATTGATT......................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................TGGA------T----------TTA-TTCTAAA-----CGG-TG-TTATGAAA........................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.........................................................................................AAATAGTTGCTAAAAAGGTGAGTG................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTATTGGCCAAAAAC------------AAAAACC............	24	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................T-GCCAGGGAATAAAACGAA------AAGTT....................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................TACAAGT-GCCAGGGAATAAAACGAA------AAGC.....................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
...........................................................................................................TGAGTGCTTATCGTAA----CTG-----A----GG-AAT--A............................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
............................................................................................................GAGTGCTTATCGTAA----CTG-----A----GG-AAT--A............................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................AAA-----CGG-TG-TTATGAAATTTTAATCG...............................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0
........................................................................................................................................................TACAAGT-GCCAGGGAATAAAACGAA------AC.......................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0
.................................................................................................................................................T--AAGTTACAAGT-GCCAGGGAA........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.....................................................................................................AAAAGGTGAGTGCTTATCGTAA----CTG-----A----GG-..................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................A----CTG-----A----GG-AAT--AAGTTACAAGT-GCCAGG...........................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................AAA-----CGG-TG-TTATGAAATTTTAATCGAC.............................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.............................................................................TATCCAATTATTAAATAGTTGCT.............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.......CA------------------------------------------------AAAAACAAAAAAACAGT.......................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................TAATCGATTCG----A-CTC------CTACATGAT---G..............................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTATTGGCCAAAAAC------------AAAA...............	21	1	1.00	1	0	1	0	0	0	0
..........................................................................................................GTGAGTGCTTATCGTAA----CTG-----A----GG-AA................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
....................................................................................................AAAAAGGTGAGTGCTTATCGTAA----CT................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................TATGAAATTTTAATCGATTCG----A-CTC------C..........................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
........................................................................................................................TAA----CTG-----A----GG-AAT--AAGTTACAAGT-GC...............................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0
.................................................................................................................................................T--AAGTTACAAGT-GCCAGGGAATAAAACG.................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................CGATTCG----A-CTC------CTACATGAT---GTATT..........................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................TAAAACGAA------AAGTTAAA-------------GCCATTCA............................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................TA--TTTGC-G-TTTCTTATTGGCCAAAAAC------------...................	27	1	1.00	1	0	1	0	0	0	0
..........................................................................................................GTGAGTGCTTATCGTAA----CTG-----A----GG-AAG--.............................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................TAATCGATTCG----A-CTC------CTACATGAT---GT.............................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................T--AAGTTACAAGT-GCCAGGGAATAA.....................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................TACAACCAG-TTG--AAAT--------TTATTA--TTTG......................................................	26	1	1.00	1	1	0	0	0	0	0
......................................................................................................AAAGGTGAGTGCTTATCGTAA----CTG-----A----TT-..................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0
.........................................................................................................................AA----CTG-----A----GG-AAT--AAGTTACAAGT-GCCA.............................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CATGAT---GTATTGATTTTTG----------------T----TTCGTTTT-----------------------..............................................................................................	28	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................ATCGATTCG----A-CTC------CTACATGAT---GTATTG.........................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................TCGATTCG----A-CTC------CTACATGAT---GTATTGAT.......................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................ATCGATTCG----A-CTC------CTACATGAT---GTATT..........................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................T-----------------------TTACAACCAG-TTG--AAAT--------TTATTA--TT........................................................	26	1	1.00	1	1	0	0	0	0	0
...........................................................................................................TGAGTGCTTATCGTAA----CTG-----A----GG-..................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
.................................................................................................GCTAAAAAGGTGAGTGCTTATCGTAA----C.................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................TTAATCGATTCG----A-CTC------CTACATGAT---G..............................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................T-GCCAGGGAATAAAACGAA------AAGTTAA..................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................TCG----A-CTC------CTACATGAT---GTATTGATTTT....................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...........................................................................................................TGAGTGCTTATCGTAA----CTG-----A----GG-AAT--AA...........................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TT-----------------------TTACAACCAG-TTG--AAAT--------TTATTA--TC........................................................	27	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................GATTCG----A-CTC------CTACATGAT---GTATTGAT.......................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................TTTG----------------T----TTCGTTTT-----------------------TTACAACCAG-T..................................................................................	24	1	1.00	1	0	1	0	0	0	0
....................................................................................................AAAAAGGTGAGTGCTTATCGTAA----C.................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................AAGTTACAAGT-GCCAGGGAATAAAA...................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................T--AAGTTACAAGT-GCCAGGGAAT.......................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.........................................................................................................GGTGAGTGCTTATCGTAA----CTG-----A----GG-..................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.....................................................................................TATTAAATAGTTGCTAAAAAGGTGAGT.................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGGCCAAAAAC------------AAAAACCAGTTACCC....	29	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................G-AAT--AAGTTACAAGT-GCCAGGG..........................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
...............................................................................................................TGCTTATCGTAA----CTG-----A----GG-AAT--AAGT.........................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
................................................................................................TGCTAAAAAGGTGAGTGCTTATCGTAA----C.................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................CAAGT-GCCAGGGAATAAAACGAA------AAG......................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................TAAAACGAA------AAGTTAAA-------------GCCATC..............................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................G-TTTCTTATTGGCCAAAAAC------------AAAAACC............	27	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CATGAT---GTATTGATTTTTG----------------T----T............................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................AATCGATTCG----A-CTC------CTACATGAT---GTA............................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................TACAAGT-GCCAGGGAATAAAACGAA------AA.......................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
.......................................................................................................AAGGTGAGTGCTTATCGTAA----CTG-----A----GG-A.................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................TTACAAGT-GCCAGGGAATAAAACGA................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................GCCATTCATGGA------T----------TTA-TTCTAAA-----CGG-...................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGGCCAAAAAC------------AAAAACCAGTTACC.....	28	1	1.00	1	0	1	0	0	0	0
......................................................................................................AAAGGTGAGTGCTTATCGTAA----CTG-----A----GG-A.................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
................................................................................................................................TG-----A----GG-AAT--AAGTTACAAGT-GCCAG............................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...................................................................................................................TATCGTAA----CTG-----A----GG-AAT--AAGTTA.......................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
........................................................................................................................TAA----CTG-----A----GG-AAT--AAGTTACAAGT-G................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTTGC-G-TTTCTTATTGGCCAAAAAC------------...................	25	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TACATGAT---GTATTGATTTTTG----------------T----TTCGTTT......................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.....................................................................................TATTAAATAGTTGCTAAAAAGGTGA...................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..................................................................AAAACAGTAACTATCCAAT............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................TGAT---GTATTGATTTTTG----------------T----TTCGTTTT-----------------------T.............................................................................................	27	1	1.00	1	0	1	0	0	0	0

droBip1

ATTCCCACA-------------------------------------CAAATATATACAAATAT--------AATAACTATCCAATTATTAAATAGTTGCTAACAAGGTGAGTGCTCAGCGTAA----CTG-----A----CG-AAT--AAGTTACAAGT-GTCAGTAAATGAAACGAA------AAGTTTAA-------------GCCATTGATGGATTCTAAG--------------------------TAG-TG-TGATGATATTTAAATCGATTCGGTACACCCC------CCACTTGAT---ATATTGATTTTTG----------------CTT----CGTTTT-----------------------TTACAACCAG-TTG--AAAT--------TTATTA--TTTGA--GTTTCTTATTGGCCAAAAAC------------AAAAACCAGTTACCTCGA-	Size	Hit Count	Total Norm	Total
No Reads

dp5

TTTTTCGGG------------------------------------------------AAATAGAAGG----AATCAGAAC-----TAAGTACTAGTTGCTAACAAGGTGAGTACCCAGAC---------G-----A------------AAAGAACAAGT-GTGAG-----TGGAACAATTGACGAAGGTGAAGATAATTAATAAAGC------TGAAACGTAGA----------TCAATGGGAAATGAGATTT----------------------------------------------------------------------------------------------------------------------TCTGAGCCAGTTTT--A-AT--------TTATGGACTCTGA-TATTTCTTATT-----------------------GAAACCAGTTACCGCAG-	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....TCGGG------------------------------------------------AAATAGAAGG----AATCAGAAC-----............................................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	3	0	0
....TCGGG------------------------------------------------AAATAGAAGG----AATCAGAA..................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	2	0	0
..............................................................GAAGG----AATCAGAAC-----TAAGTACTAGTTGCT.............................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................GAAGGTGAAGATAATTAATAAAGC------TGAAA.......................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..TTTCGGG------------------------------------------------AAATAGAAGG----AATCA.....................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................ATAAAGC------TGAAACGTAGA----------TCAATGGA...............................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0

droPer2

TTTTTCGGG------------------------------------------------AAATAGAAGG----AATCAGAAC-----TAAGTACTAGTTGCTAATAAGGTGAGTACCCAGAC---------G-----A------------AAAGAACAAGT-GTGAG-----TGGAACAATTGACGAAGGTGAAGATAATTAATAAAGC------TGAAACGTAGA----------TCAATGGGAAATGAGATTT----------------------------------------------------------------------------------------------------------------------TCTGAGCCAGTTTT--A-AT--------TTATGGACTCTGA-TATTTCTTATT-----------------------GAAACCAGTTACCGCAA-	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
TTTTTCGGG------------------------------------------------AAATAGAAGG----AATCAG....................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	2
................................................................AGG----AATCAGAAC-----TAAGTAC.....................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................TT--A-AT--------TTATGGACTCTGA-TA..................................................	20	1	2.00	2	2	0	0	0	0	0
.........................................................AAATAGAAGG----AATCAGAAC-----TA..........................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
..........................................................AATAGAAGG----AATCAGAAC-----T...........................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................CAGTTTT--A-AT--------TTATGGACT.........................................................	19	1	1.00	1	1	0	0	0	0	0
...........................................................ATAGAAGG----AATCAGAAC-----T...........................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..........................................................AATAGAAGG----AATCAGAAC-----TA..........................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..TTTCGGG------------------------------------------------AAATAGAAGG----AATC......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.....CGGG------------------------------------------------AAATAGAAGG----AATC......................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0
.....CGGG------------------------------------------------AAATAGAAGG----AATCAGAAC-----TA..........................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
...............................................................AAGG----AATCAGAAC-----TAAGTA......................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0

droVir3

ATTAAAGCGGTGAATTTAGTATAGCTGTGAATCAGTTTACAATTAACTAATAAATAC--------------AAAGAGAA------CAAGCAACAGCTGCAAACTAGGTAAGCGCACACAACACA---ATT-----A---AAA------CTAAAT------------------------------------------------------------AAA------TTTCCACAAAATAACT------------T-TTAATAACTGC-------------------A-CCT------GGTTATAAATGCGCAAGAGCATTTGCTTCGAACGTTTAACGAAAAGAACACTTC-----------------------TGAAAATTCGATTT--ATAA--------TTGTTC--ACTGA-A------------ACAATAAT------------CAAAACCAGTTTTCGCAGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........GGTGAATTTAGTATAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
ATTAAAGCGGTGAATTTAGTATAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TAAAGCGGTGAATTTAGTATAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TTTAGTATAGCTGTGAATC................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GGTGAATTTAGTATAGCTGTGAATC................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................ATAC--------------AAAGAGAA------CAAGCAACAGCT................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................AGTATAGCTGTGAATCAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GGTGAATTTAGTATAGCTGTGAATCAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................C--------------AAAGAGAA------CAAGCAACAGCTG...............................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TTAAAGCGGTGAATTTAGTATAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
....................................................AATAC--------------AAAGAGAA------CAAGC.......................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GGTGAATTTAGTATAGCTGTGAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................TAC--------------AAAGAGAA------CAAGCAACAGCTGC..............................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GCGGTGAATTTAGTATAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................AAATAC--------------AAAGAGAA------CAAGC.......................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................TAC--------------AAAGAGAA------CAAGCAACAG..................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................AGAGAA------CAAGCAACAGCTGC..............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................ATAC--------------AAAGAGAA------CAAGCAACAGCTGC..............................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................A------CAAGCAACAGCTGCAAACTAGCCC....................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TTAAAGCGGTGAATTTAGTATAGCTGTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....AGCGGTGAATTTAGTATAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
ATTAAAGCGGTGAATTTAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GTATAGCTGTGAATCAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....AGCGGTGAATTTAGTATAGCTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................ATAAATAC--------------AAAGAGAA------CAAGC.......................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...AAAGCGGTGAATTTAGTATAGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................AAAGAGAA------CAAGCAACAGCT................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................TAAATAC--------------AAAGAGAA------CAAGCAAC....................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GTGAATTTAGTATAGCTGTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................TATAGCTGTGAATCAGTTTACAATTAACT.................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................ATAAATAC--------------AAAGAGAA------CAAGCAAC....................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................TAATAAATAC--------------AAAGAGAA------CAAGCAACA...................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................ACAATTAACTAATAAATAC--------------AAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TAAAGCGGTGAATTTAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................AACTAATAAATAC--------------AAAGAGA...................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TTAGTATAGCTGTGAATCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TTAAAGCGGTGAATTTAGTATAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................AAAGAGAA------CAAGCAACAGCTGCAAACT.........................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................AATAAATAC--------------AAAGAGAA------CAAGCAAC....................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

dsi_4212

2r:7981313-7981462 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-4.7	-4.7	-4.7