ID:

dsi_4191

 Coordinate:

3r:4131753-4131902 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CGTCCTAGGCTTACATTTAAGTGCACATTGTCAAAACCATTAGACATCTAACAATCCACTCTTAAATAAATAACTTCTTTTAATTTTAAACAAAATTTACGACGAACTACATCTGTTTCCATAAGGATAGACCTACGCTTTTGACGTAGCCCTTGTTCACACATTCCCAAACTAATCCAGACTTTCCATTTCATCCACAGCATTTCACATTGACTTCGCGGACTCCAAGAAGAACGGCGGCAAGTTGCTG
**************************************************......................................(((((...(((((.((((.....(((((((......)))))))........)))).)))))...)))))...........................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 O001
Testis
 SRR618934
dsim w501 ovaries
.........................................................................................................................................................................................CCATTTCATCCACAGCATTTC............................................ 21 0 1 1.00 1 1 0 0 0 0
........................................................................................................AACTATATCTGTTTCCATCAA............................................................................................................................. 21 3 7 0.29 2 0 2 0 0 0
..............................................................................................................................................................ACACAATCCCAAACTAATTAA....................................................................... 21 3 18 0.06 1 0 0 1 0 0
............................................................................CTTTAAATTTTAAACAAA............................................................................................................................................................ 18 1 19 0.05 1 0 0 0 1 0
.............................................ATCTAACAATGCGCTCATA.......................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

GCAGGATCCGAATGTAAATTCACGTGTAACAGTTTTGGTAATCTGTAGATTGTTAGGTGAGAATTTATTTATTGAAGAAAATTAAAATTTGTTTTAAATGCTGCTTGATGTAGACAAAGGTATTCCTATCTGGATGCGAAAACTGCATCGGGAACAAGTGTGTAAGGGTTTGATTAGGTCTGAAAGGTAAAGTAGGTGTCGTAAAGTGTAACTGAAGCGCCTGAGGTTCTTCTTGCCGCCGTTCAACGAC
**************************************************......................................(((((...(((((.((((.....(((((((......)))))))........)))).)))))...)))))...........................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR902009
testis
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
....................................................................................................................................................................AAGGTTTGGTTAGGTCTGAGAG................................................................ 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................................CTGCTTGATGTAGACAAAAGT................................................................................................................................. 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................GTCAAGTATGTGTCGTCAAGT........................................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................TCAAATGCTGCTTGATG............................................................................................................................................ 17 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................TGTTTTAAATGCTGC.................................................................................................................................................. 15 0 2 0.50 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AAAGTAAATGTCGTAAAGTGT......................................... 21 2 2 0.50 1 0 1 0 0 0 0 0 0 0
.............................................................................AAAATTAAAATTTGTT............................................................................................................................................................. 16 0 11 0.18 2 0 1 0 0 0 0 1 0 0
.............................................................................................................................................................................................AGGTAGGTGTCGTAGAGTGTA........................................ 21 2 6 0.17 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................GAAAGGTAAAGTAGTCGT................................................... 18 2 20 0.15 3 0 0 0 0 2 0 0 0 1
.............................................................................................................................................................................................AGGTAGGTGTCGGAGAGTGTA........................................ 21 3 8 0.13 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................ATGCGAAAACTGCATAT.................................................................................................... 17 2 8 0.13 1 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................GTGTCGTAGAGTGTAA....................................... 16 1 9 0.11 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GAAAGGTAAAGTAGTCGTTG................................................. 20 3 20 0.10 2 0 0 0 0 2 0 0 0 0
..............................AGTTTGGGCTATCTGTAGA......................................................................................................................................................................................................... 19 3 14 0.07 1 0 0 0 0 0 1 0 0 0
.........................................TCCGTAGATTGTTAGGC................................................................................................................................................................................................ 17 2 15 0.07 1 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................AAGGGTTTGATTCGG........................................................................ 15 1 16 0.06 1 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................GTAAGGGTTTGATGA.......................................................................... 15 1 17 0.06 1 0 0 0 0 0 0 1 0 0
........................................ATCTGTAGATTGTACGGTA............................................................................................................................................................................................... 19 3 19 0.05 1 1 0 0 0 0 0 0 0 0
........................................................................................................TTGATGTAGGCAGAAGTA................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................TCTGAAAGGTAAGGT......................................................... 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0

Generated: 04/23/2015 at 08:40 PM