ID:

dsi_4183

Coordinate:

3r:10681629-10681906 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3r_10681330_10681628_+]; CDS [3r_10681330_10681628_+]; CDS [3r_10681907_10683536_+]; exon [3r_10681907_10683536_+]; intron [3r_10681629_10681906_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GGCCCAGGAGGAGTACAATCATCTGAAACTGGCAGCCAGTCGAAGCAGTCGTAAGTACCTATTACAATCTATTTAAGCACACCTGGTGTCATGATAGTTTGATTTCGGCTTAACCAGCATTTTTGGAACTGCTCTAATCGCTTGTATCATGTTTTGACAAATACATAATCTTCCAAGGAATGGAAGAACATTGTTCTGAGAAGAACCAACAACTGAAATCTATATCTTTAAATTGACATAAATCAACAAAGCACTTGATGTGCTATTATTCTGAAAACCTAATCTCTTTTTTCCTAACGTGGAACTAATATATTTCCCATATTTTCAGTGTGCTCTTCCTCCAGTTCGATGAGTCGCCACGATCCGGAACTACTAAGA ************************************************((((.......))))..........((((((...((((((((((((...(((((..(((....((((.....))))....)))..)))))....))))))).................(((((((.....))))))).....(((((....)))))..........................((((......))))....)))))...))))))......(((((((.............((((......)))).................)))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M024 male body	M053 female body	SRR553485 Chicharo_3 day-old ovaries	SRR902009 testis	M023 head	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
.....................................................................................................................................................................................................................................................................................................................................................................CACGATCCGGAACTACTAA..	19	0	1	2.00	2	2	0	0	0	0	0	0	0	0
............GTACAATCATCTGAAACTGGCAGCC.....................................................................................................................................................................................................................................................................................................................................................	25	0	1	2.00	2	2	0	0	0	0	0	0	0	0
.............................................................................................ATAGTTTGAGTTCGGATT...........................................................................................................................................................................................................................................................................	18	2	17	1.71	29	0	18	0	0	0	11	0	0	0
.............................................................................................ATAGTTTGATTTCGGATT...........................................................................................................................................................................................................................................................................	18	1	2	1.50	3	0	3	0	0	0	0	0	0	0
........................................................................................TCATGATGGTTTGATTTCGG..............................................................................................................................................................................................................................................................................	20	1	1	1.00	1	0	0	0	0	1	0	0	0	0
...............CAATCATCTGAAACTGG..........................................................................................................................................................................................................................................................................................................................................................	17	0	1	1.00	1	0	0	0	1	0	0	0	0	0
.......................TGAAACTGGCAGCCAGTCGAAG.............................................................................................................................................................................................................................................................................................................................................	22	0	1	1.00	1	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................TTCGATGAGTCGCCA...................	15	0	3	0.33	1	0	0	0	0	0	0	1	0	0
...................................................................................................................................................................................................CTGACAAGAACCCGCAACTG...................................................................................................................................................................	20	3	5	0.20	1	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................TCCCATATTGTCAGT.................................................	15	1	9	0.11	1	0	0	0	0	0	0	1	0	0
.................ATCCTCTGTAACGGGCAGC......................................................................................................................................................................................................................................................................................................................................................	19	3	14	0.07	1	0	0	0	0	0	0	0	0	1
......................................................................................................................................................................................................AGAAGAGCAAACAACCGAAAT...............................................................................................................................................................	21	3	14	0.07	1	0	0	0	0	0	0	0	1	0

Anti-sense strand reads

CCGGGTCCTCCTCATGTTAGTAGACTTTGACCGTCGGTCAGCTTCGTCAGCATTCATGGATAATGTTAGATAAATTCGTGTGGACCACAGTACTATCAAACTAAAGCCGAATTGGTCGTAAAAACCTTGACGAGATTAGCGAACATAGTACAAAACTGTTTATGTATTAGAAGGTTCCTTACCTTCTTGTAACAAGACTCTTCTTGGTTGTTGACTTTAGATATAGAAATTTAACTGTATTTAGTTGTTTCGTGAACTACACGATAATAAGACTTTTGGATTAGAGAAAAAAGGATTGCACCTTGATTATATAAAGGGTATAAAAGTCACACGAGAAGGAGGTCAAGCTACTCAGCGGTGCTAGGCCTTGATGATTCT ************************************************((((.......))))..........((((((...((((((((((((...(((((..(((....((((.....))))....)))..)))))....))))))).................(((((((.....))))))).....(((((....)))))..........................((((......))))....)))))...))))))......(((((((.............((((......)))).................)))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	M023 head	M024 male body	M025 embryo
.................................................................................GGACCACAGTACTATACA.......................................................................................................................................................................................................................................................................................	18	2	2	0.50	1	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................CCAGGCCTTGATGATT..	16	1	2	0.50	1	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................TCTTCTCGTTTGTTGGCTTTA...............................................................................................................................................................	21	3	14	0.36	5	0	0	5	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CACGAGATGGAGGTC..................................	15	1	5	0.20	1	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................CAGCGGCGCTAGGCTTTGAA......	20	3	6	0.17	1	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................ACGAGATGGAGGTCA.................................	15	1	6	0.17	1	0	0	0	0	1	0	0	0
...............................................................................TTGGACCACAGTACTATACA.......................................................................................................................................................................................................................................................................................	20	3	6	0.17	1	1	0	0	0	0	0	0	0
............................................CGTCAGCAGTCTGGGATA............................................................................................................................................................................................................................................................................................................................	18	3	10	0.10	1	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................TACGAGCAGGAGGTCAAGCTG............................	21	3	12	0.08	1	0	0	0	1	0	0	0	0
...............................................................................TTGGACCACAGTACTATAC........................................................................................................................................................................................................................................................................................	19	3	14	0.07	1	1	0	0	0	0	0	0	0
CCAGGCCCTCTTCATGTTA.......................................................................................................................................................................................................................................................................................................................................................................	19	3	15	0.07	1	0	0	0	0	0	1	0	0
............................................................................................................................................................................................................TCGATGTTGACTTTAGAT............................................................................................................................................................	18	2	15	0.07	1	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................ACAGCGGCGCTAGGCTTTG........	19	3	20	0.05	1	0	0	0	0	0	0	0	1
...................................................................................................................................................................................................CAGTCTTCTTGGTTGATGA....................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1	0

Generated: 04/24/2015 at 10:48 AM