ID:

dsi_4179

 Coordinate:

4:434486-434635 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.1 -20.9 -20.9 -20.7

Flybase annnotation

CDS [4_434636_436353_-]; exon [4_434636_437143_-]; intron [4_433992_434635_-]

Repeatable elements

NameClassFamilyStrand
DNAREP1_DYakRCHelitron-
DNAREP1_DMRCHelitron+

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCAGATCACATCTCCGAAGGAGATAACGGACCAGACGTCAATGGCGGAACGTAAGTATTTTTTTAGCTACTCTGGTCGTATTTTATGTTGTCGAGGCGTTCATACGGACAAATTGATGTGTACATGTATTTCATGTGGTCGGAAACGCTTCCTTCTGCCTGTTACATACTGTCGAGATCTCTGGAACTATAAAAATGTGTGCCTCGCCCACACTTTTTCAATTATGGATATGATAGTATTGATATCTTTT
**************************************************************...........(((((.....(((((.....(((((.......((.....(((((...((((((.....))))))))))).....))......)))))...)))))....)))....))********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 M025
embryo
 SRR902008
ovaries
 SRR902009
testis
.CAGATTACATCTTCGAAGGAT.................................................................................................................................................................................................................................... 21 3 1 93.00 93 76 14 3 0 0 0 0 0 0
CCAGATTACATCTTCGAAGGA..................................................................................................................................................................................................................................... 21 3 3 21.00 63 56 3 4 0 0 0 0 0 0
....................................................................................................................................................................................CTGGAACTATAAAAATGTGTGCCT.............................................. 24 0 1 7.00 7 3 2 0 1 1 0 0 0 0
.CAGATTACATCTTCGAAGGA..................................................................................................................................................................................................................................... 20 2 1 6.00 6 5 1 0 0 0 0 0 0 0
..............................................................................................................................................................CTGTTACATACTGTCGAGATCTC..................................................................... 23 0 1 4.00 4 0 1 0 2 0 1 0 0 0
..............................................................................................................................................................CTGTTACATACTGTCGAGATCTCT.................................................................... 24 0 1 3.00 3 0 0 2 0 0 1 0 0 0
.................................................................................................................................................................................TCTCTGGAACTATAAAAATGTGTGC................................................ 25 0 1 2.00 2 0 1 0 0 1 0 0 0 0
....................................................................................................................................................................................CTGGAACTATAAAAATGTGTGCCTC............................................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.....................................................AGTAGTTTTTTAGCTA..................................................................................................................................................................................... 16 1 5 1.80 9 0 0 0 9 0 0 0 0 0
....................................................................................................................................................................................CTGGAACTATAAAAATGTGTGCCTCG............................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................TGGAACTATAAAAATGTGTGCCACGCCC......................................... 28 1 1 1.00 1 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................TCTGGAACTATAAAAATGTGTGCCACGCC.......................................... 29 1 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................TTTTCAATTATGGATATGATAGTATT.......... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................TGGCGGAACGTAAGTATTTTTTTAGC....................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................ATAACGGACCAGACGTCAATG............................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................................TCTCTGGAACTATAAAAATGTGTGCCT.............................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................TTCCTTCTGCCTGTTACATACTGTCGA........................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................ACATACTGTCGAGATCTCTGGAA................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TAAAAATGTGTGCCTCGCCCACACTT................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................TCTGGAACTATAAAAATGTGTGCCTCGCCC......................................... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................GATCTCTGGAACTATAAAAATGTGTGC................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TCTGGAACTATAAAAATGTGTGCCTCGC........................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................ATCTCTGGAACTATAAAAATGTGTGCC............................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................TCTCTGGAACTATAAAAATGTGTG................................................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................ACATACTGTCGAGATCTCTGGAACTA............................................................. 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................CTGGAACTATAAAAATGTGTGCCTCGCC.......................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................TTAGCTACTCTGGTCGTATTTTATGTT................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..AGATTACATCTTCGAAGGAT.................................................................................................................................................................................................................................... 20 3 6 1.00 6 6 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TCTGGAACTATAAAAATGTGTGCCT.............................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................CTGGAACTATAAAAATGTGTGCC............................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................TTTCATGTGGTCGGAAACGCT..................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................GTCGTATTTCATGTTGTCGAG........................................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................CGAGATCTCTGGAACTATAAAA........................................................ 22 0 6 0.17 1 1 0 0 0 0 0 0 0 0
..AGATTACATCTTCGAAGG...................................................................................................................................................................................................................................... 18 2 6 0.17 1 1 0 0 0 0 0 0 0 0
....................................................................ACTCTGGTCGAATTGGATGT.................................................................................................................................................................. 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0
.......................................................TAGTTTTTTAGCTACT................................................................................................................................................................................... 16 1 9 0.11 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................CGAGATCTCAGGAACTATAAAAAT...................................................... 24 1 19 0.11 2 1 0 1 0 0 0 0 0 0
....................................................................................................................................................TTCCTTCTGCCTGTTACATAC................................................................................. 21 0 20 0.10 2 0 0 2 0 0 0 0 0 0
................................................................AGCTGGTCTGGTGGTATTTT...................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 0 0 1
......................................................GTAGTTTTTTAGCTA..................................................................................................................................................................................... 15 1 16 0.06 1 0 0 0 1 0 0 0 0 0
........................................................................................TGTCGAGGCGGTGATA.................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0
..........TCTAAGAAGGAGATAA................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0
....................................................................................................................................................TTCCTTCGGCCTGTTACATACT................................................................................ 22 1 20 0.05 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................CTTCCTTCTGCCTGTT....................................................................................... 16 0 20 0.05 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................TCTGCCTGTTACATACT................................................................................ 17 0 20 0.05 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................AAATGATAGTATTGA........ 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................AGAGATCTCAGGAACTATAAAAAT...................................................... 24 2 20 0.05 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

AGTCTAGTGTAGAGGCTTCCTCTATTGCCTGGTCTGCAGTTACCGCCTTGCATTCATAAAAAAATCGATGAGACCAGCATAAAATACAACAGCTCCGCAAGTATGCCTGTTTAACTACACATGTACATAAAGTACACCAGCCTTTGCGAAGGAAGACGGACAATGTATGACAGCTCTAGAGACCTTGATATTTTTACACACGGAGCGGGTGTGAAAAAGTTAATACCTATACTATCATAACTATAGAAAA
*********************************************************************...........(((((.....(((((.....(((((.......((.....(((((...((((((.....))))))))))).....))......)))))...)))))....)))....))************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 M024
male body		 M053
female body
 SRR553488
RT_0-2 hours eggs
 M023
head
............................................................................................................................................................CGGACAATGTATGACAGCTCTAGAGA.................................................................... 26 0 1 29.00 29 22 3 2 0 1 1 0 0 0 0
...........................................................................................................................................................ACGGACAATGTATGACAGCTCTAGAGA.................................................................... 27 0 1 7.00 7 0 6 1 0 0 0 0 0 0 0
................................................................................................................................................TGCGAAGGAAGACGGACAATGTAT.................................................................................. 24 0 20 6.25 125 0 0 0 124 0 0 0 0 1 0
.............................................................................................................................................................GGACAATGTATGACAGCTCTAGAGA.................................................................... 25 0 1 5.00 5 0 3 2 0 0 0 0 0 0 0
..........................GCCTGATCTGCTGTTACCT............................................................................................................................................................................................................. 19 3 13 3.23 42 0 0 0 1 0 0 29 0 0 12
.....AGTGTAGAGGCTTCCTCTATTGCCTGGT......................................................................................................................................................................................................................... 28 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.............................................................................................TCCGCAAGTATGCCTGTTTAA........................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
AGTCTAGTGTAGAGGCTTCCT..................................................................................................................................................................................................................................... 21 0 1 2.00 2 1 0 0 0 0 0 0 1 0 0
...................................................................................ATACAACAGCTCCGCAAGTATGCCTG............................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................ACAATGTATGACAGCTCTAGAGACCT................................................................. 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
......................................................................................................................................................................ATGACAGCTCTAGAGACCTTGATATTT......................................................... 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
........................................................................................................GCCTGTCTTACTACACATGTACATAAA....................................................................................................................... 27 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................CGGACAATGTATGACAGCTCTAGAGACCT................................................................. 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................CAGACAATGTATGACAGCTCTAGAGA.................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................AGCATAAAATACAACAGCTCCGCAAGT.................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................CAATGTATGACAGCTCTAGAGACCTT................................................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................CGGACAATGTGTGACAGCTCTAGGGA.................................................................... 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................ATACAACAGCTCCGCAAGTATGCCT.............................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................ATGACAGCTCTAGAGACCTTGATATTTTT....................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................GGTCTGCAGTTACCGCCTTGCATT.................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................CTATTGCCTGGTCTGCAGTTACCGC............................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................AGGAAGACGGACAATGTATGACAGCTC.......................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................AGGAAGACGGACAATGTATGACAGCT........................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................ACACGGAGCGGGTGTGAAAAAGT.............................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................ACCACAGCTCCGCCACTATGC................................................................................................................................................ 21 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..........................................................................CAGCATAAAATACAACAGCTCCGCAAGT.................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................GCGAAGGAAGACGGACAATGTATACCACCT........................................................................... 30 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.............................TGGCCTGCAGTTATCGCCTTGCAT..................................................................................................................................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................CAATGTATGACAGCTCTAGAGACCT................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
..........................GCCTGGTCTGCAGTTACCGCCTTGCAT..................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................AGCTCCGCAAGTATGCCTGTTTAAC....................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................CTACACATGTACATAAAGTACACCAGCCT........................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................AGACGGACAATGTATGACAGCTCT......................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.GTCTAATGTAGAAGCTTCCTA.................................................................................................................................................................................................................................... 21 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................TCCGCAAGTATGCCTGTCTTACTACACAT................................................................................................................................ 29 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................ATGTATGACAGCTCTAGAGACCT................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GACAATGTATGACAGCTCTAGAGA.................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................ACAGCTATAGAGAGCTGGAT............................................................. 20 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0
GGTCTAATGTAGAAGCTTCCT..................................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0
.GTCTGGTGTTGAGGCTTC....................................................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................TTGCGAAGGAAGACGGACAATGTAT.................................................................................. 25 0 20 0.30 6 0 3 0 0 0 0 0 3 0 0
..........................GCCTGATCTGCTGTTACC.............................................................................................................................................................................................................. 18 2 4 0.25 1 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................AAGGAAGACGGACAATGTAT.................................................................................. 20 0 20 0.20 4 0 0 0 0 2 0 0 0 2 0
.............................................................................................................................................CTTTGCGAAGGAAGACGGACAATGTAT.................................................................................. 27 0 20 0.15 3 0 0 0 3 0 0 0 0 0 0
................................................................................................................................................................................................TTTATACAGGGAGCGGATGT...................................... 20 3 7 0.14 1 0 0 0 0 0 0 0 0 1 0
GGTCTAATGTAGAAGCTTCC...................................................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0
.....................................................TCATAAAAAGATCGAT..................................................................................................................................................................................... 16 1 8 0.13 1 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................GCTCTAGAGACCTTGATA............................................................ 18 0 9 0.11 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................ACCAGCCTTTGCGAAGGAAGACG............................................................................................ 23 0 20 0.10 2 0 0 0 0 1 0 0 0 1 0
...............................................................................................................................................TTGCGAAGGAAGACGGACAATGT.................................................................................... 23 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
......................................................................................................................................................GGAAGACGGACAATGT.................................................................................... 16 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0
................................................................................................................................................TGCGAAGGAAGACGGACAAT...................................................................................... 20 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0
..........................................................................................................................................................................CAGCTCTAGAGACCTTGATCT........................................................... 21 1 15 0.07 1 0 0 0 0 0 1 0 0 0 0
.........................................ACCGCCTTGCCTACATA................................................................................................................................................................................................ 17 2 16 0.06 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................AGCTCTAGAGACCTTGATCTT.......................................................... 21 1 16 0.06 1 0 1 0 0 0 0 0 0 0 0
...................................................................................AGACAGCAGCTCCGCGAGT.................................................................................................................................................... 19 3 16 0.06 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................AGCCTTTGCGAAGGAAGACGGACAAT...................................................................................... 26 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................TTGCGAAGGAAGACGGACAAT...................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................CTTTGCGAAGGAAGACGGACAAT...................................................................................... 23 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................AAGGAAGACGGACAATGTATG................................................................................. 21 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................AGGTACATAAAGTAC................................................................................................................... 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................TGCGAAGGAAGACGGACAATGT.................................................................................... 22 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................GCCTTTGCGAAGGAAGACGGACAATGT.................................................................................... 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................GAAGGAAGCCGGACAATGTAT.................................................................................. 21 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................GAAGGAAGACGGACAATG..................................................................................... 18 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................AGGAAGACGGACAATGTATGA................................................................................ 21 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................AAGACGGACAATGTA................................................................................... 15 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................TGCGAAGGAAGACGGACAATG..................................................................................... 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:434436-434685 - dsi_4179 TC-AGATCACATCTCCGAAGGAGATAACGG---ACCAGACGTCAATGGCGGAACGTAAGTATTT----------------------TTTTAGCTACTCTGGTCG-------TATTT---------------------TATGTTGTCGAGGCGTTCATACGGACAAATTGA--------T-------------------------GTGTACATGTATT-TCATGTGGTCGGAAACGCTTCCTTCTGCCTGTTA-----------CATACT-----------GTCGAGATCTCTGGAACTATAAAAATGTGTGCCTCGCCCAC------ACTT------TTT--CAATTATGGATATGATAG-----------TATTGAT---------ATCTTTT
droSec2 scaffold_30:347472-347709 - TC-AGATCACATCTCCGAAGGAGATAACGG---ACCAGACGTCAATGGCGGAACGTAAGTATTTT---------------------TTTTAGCTACTCTGGTCG-------TATTT---------------------TATCTTGTTGAGGCGTTCATACGGACAGAATGA--------T-------------------------GTGTATATGTATT-TCATGTGGTCGGAAACGCTTACTTCTGCCTGTTA-----------CATACT-----------GTCGAGATCTCTGGAACTATAAAAATGTGTGCCACGCCCAC------ACTT------TTT--T-----------TAAAAC-----------G--TGAT---------ATCTTTT
dm3 chr4:625421-625678 - TC-AGATCACATCTCCGAAGGAGAAAACGG---ACCGGACGTCAATAGCGGAACGTAAGTATTTT--------------------TTTTTAGCTACTTTAGTCGGCATATGTATTTTATGGTTCACTACTTATAGTTCTTGGGGTCGAGGCGTTCATACGGACAGAATGA--------------------------TCAAGAATTTGTAAATGTATT-TTATATATTCGGAAACGCTTCCTTCTGCCTGTTA-----------CATTCT-----------GTC-------GAATGTGTGCCAC------------GTCCACACTTTTGCTA------AAT--GTGT------------------------------------TTTGTATCTTTC
droEre2 scaffold_4784:5777053-5777226 - AG------------------------------------------------------------TT----------------------TTTTTACCACTTAGTTAC-------CA----------------TCTCAGTTCCTGAGGTCCAGGCGTTCATACGGACAGAGGG-----------------------------------------ACGTACT-TTTTATAGTCGGAAACGCGTCCTTCTGCCTGTTA-----------AATACT-----------TTT-------CAACGAATCTAGT--------------GTACCCTTTTACTC------TAC--GAGTAACGGGTATAATAA-----------TA--AAT---------ACGTTTT
droYak3 2R:949194-949396 - AGCGGATCGTATATCATAGGA-------------------------------AAGTCG-TAGTCT---------------------CTTTTGCAAATTGTGTCG-------AAATT---------------------TCTTGCTCAGGGTCATTT-----GCCGAGTCGA--------T-------------------------CTGGACAT------------------------GTCCGTCCGTTTGTCAGTCCGTTTGTCTGTCCGTCCGTATGAACGTCGAGATCTCAGTAACTATAAAAGTT--------------------------------AGAAAGT--TGAGAATAAAAAAT---------TT-----TTGTTTAATATTTTTT
droEug1 scf7180000408984:313693-313808 - T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATACT-TTATAGGGTAGGAAACGCTTCCTTCTACCTGTTG-----------CATACT-----------TTT-------TAACGAATCTAAT--------------ATATCCTTTTACTC------TAC--GAATAACGGGTATAATAAG----------TAGCCCA---------ATCTTTT
droBia1 scf7180000301495:1034397-1034587 - TT-TAAC--------------------------------------------------------------------------------------TGTCCTAGC-------------------------TCTTATAGTTTTCGAAATCTTAGCGTTCATACGGACAGAAAGACAGACGGAC-------------------------ATGGCTAGATACA-TTATGGGGTCGAAAACGCTTCCTTATACCTGTTA-----------CATACT-----------TTT-------CGACGAATCTAGT--------------AAACCCTTTTACTC------TAC--GAGTAACGGGTATAAAAATT--------------ATATCTTTGATGTTTATT
droTak1 scf7180000414005:5479-5683 - CA-----------------------------------AATGTTGATATCAGAACTTTTGTATGTTGAAGGTGCGTTCGTCACTAGTTTTTTACCTCGTTAAGAGGTGTTTTTAT----------------------------------------------------------------T-------------------------TGATATATATACT-TTATGGGGTCGGAATCGCTTCCTTCTAGCTGTTA-----------CATACT-----------TTT-------GCACGAATCTAGT--------------ATACCCTTTTACTC------TAC--GAGTAACGGGTATAATAAATTTATTAA--TA--GAT---------CTATTTT
droEle1 scf7180000486688:40545-40664 + AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATTGCTATGGGATCGAAAACGTTTTCTTCTGCCTGTTA-----------CATACT-----------TCT-------CAACAAATACAATA-------------ACACCCTTTTACTC------TTT--TAATGACGGGTATAATTAA-------------TAAT---------AACTTCG
droRho1 scf7180000760966:6774-6954 - TT---------------------------------------------------------------------------------------------------------------------------------ATAGTTTACGAGATCTCAGCGTTCATACGGACAGACGGA--------CACGGCTAGTGATCCTGAACAA----GAATATATATACT-TTATAGGGTCGAAAACGCTTCCTTCTACCTGTTA-----------CATACT-----------TTT-------GCACGAATACAAA--------------ATACCCTTTTACTC------TAC--GAGTAACGGGTATAAAAA-----------TACAAGA---------ATCTTTT
droFic1 scf7180000454040:214691-214766 - TC-CGACCACATTTCTGGAGGAGATAGCGGCGACGCAGATGTCAATGGAGAGAAGT--------------------------------TTAGCTATTCTGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACATCT
droKik1 scf7180000302345:15983-16058 - TC-TGATCATATCTCTGGTGGAGATAGTGCCGACACTGATGTTCATGGGGAAAAGT--------------------------------TTTCTTACTCTGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATATTT
droWil2 scf2_1100000004954:517180-517297 - TT--------------------------------------------------------------------------------------CTAGCT----------------------------------CTTATAGTCTCCGACATCTAGGAGTTCATACGGACAGAT------------------------------CAA----GTACGTATATACT-TTATAGGGTCGGAAAAGCTTTCTTCTGTCTGATA-----------CATACA-----------TTT-------CTGCAACTTTAA--------------------------------------------------------------------------------------------
droVir3 scaffold_12942:32050-32177 + T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATACT-TTATGGGGTCGAAAATGCTTCCTTCTGCCTGTTA-----------CATACA-----------TTTGGATTTTGCACAAATACAAT--------------ATACTCTTATACCCATTTTTAAT--GGGTTCAGGGTATAAAAA-----------TATTGAT---------ATCTGTT
droMoj3 scaffold_99:529-678 - CA----------------------------------------------------------------------------------------------------------------------------------------------------------GACGGACAGGG----------------C---------TGATCAA----GAATATATATACT-TTGTGGGGTCTGCCACGCCTCCTTCTGCCTGTTA-----------CATACT-----------GTT-------AAGGCATTTGGAT--------------A------TTTGCCC------TCT--GAATTATTATTATATTATATATATTATTATATT---ATATTATATATTATTA
droGri2 scaffold_14853:5137470-5137523 + AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTATATATACT-TTATGGGGTCGGAGATGCTTCCTTCTGCCTGTTA-----------CATAC------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TC-AGATCACATCTCCGAAGGAGATAACGG---ACCAGACGTCAATGGCGGAACGTAAGTATTT----------------------TTTTAGCTACTCTGGTCG-------TATTT---------------------TATGTTGTCGAGGCGTTCATACGGACAAATTGA--------T-------------------------GTGTACATGTATT-TCATGTGGTCGGAAACGCTTCCTTCTGCCTGTTA-----------CATACT-----------GTCGAGATCTCTGGAACTATAAAAATGTGTGCCTCGCCCAC------ACTT------TTT--CAATTATGGATATGATAG-----------TATTGAT---------ATCTTTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................CTGGAACTATAAAAATGTGTGCCT................................................................................2417.00700000021301000000
......................................................................................................................................................................................................................................................CTGTTA-----------CATACT-----------GTCGAGATCTC.......................................................................................................2314.00400010010002000000
......................................................................................................................................................................................................................................................CTGTTA-----------CATACT-----------GTCGAGATCTCT......................................................................................................2413.00300010000020000000
...............................................................................................................................................................................................................................................................................................TCTCTGGAACTATAAAAATGTGTGC..................................................................................2512.00200000011000000000
..................................................................................................................................................................................................................................................................................................CTGGAACTATAAAAATGTGTGCCTC...............................................................................2512.00200000000200000000
..................................................................................................................................................................................................................................................................................................CTGGAACTATAAAAATGTGTGCCTCG..............................................................................2611.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................................T------TTT--CAATTATGGATATGATAG-----------TATT...................2611.00100000010000000000
.............................................TGGCGGAACGTAAGTATTT----------------------TTTTAGC.............................................................................................................................................................................................................................................................................................................2611.00100000010000000000
.......................ATAACGG---ACCAGACGTCAATG...........................................................................................................................................................................................................................................................................................................................................................2111.00100000000000010000
...............................................................................................................................................................................................................................................................................................TCTCTGGAACTATAAAAATGTGTGCCT................................................................................2711.00100000010000000000
............................................................................................................................................................................................................................................TTCCTTCTGCCTGTTA-----------CATACT-----------GTCGA.............................................................................................................2711.00100000000100000000
...........................................................................................................................................................................................................................................................A-----------CATACT-----------GTCGAGATCTCTGGAA..................................................................................................2311.00100000000100000000
...........................................................................................................................................................................................................................................................................................................TAAAAATGTGTGCCTCGCCCAC------ACTT------.........................................................2611.00100010000000000000
.................................................................................................................................................................................................................................................................................................TCTGGAACTATAAAAATGTGTGCCTCGCCC...........................................................................3011.00100000000100000000
.............................................................................................................................................................................................................................................................................................GATCTCTGGAACTATAAAAATGTGTGC..................................................................................2711.00100000000100000000
.................................................................................................................................................................................................................................................................................................TCTGGAACTATAAAAATGTGTGCCTCGC.............................................................................2811.00100000000100000000
..............................................................................................................................................................................................................................................................................................ATCTCTGGAACTATAAAAATGTGTGCC.................................................................................2711.00100000001000000000
...............................................................................................................................................................................................................................................................................................TCTCTGGAACTATAAAAATGTGTG...................................................................................2411.00100000001000000000
...........................................................................................................................................................................................................................................................A-----------CATACT-----------GTCGAGATCTCTGGAACTA...............................................................................................2611.00100100000000000000
..................................................................................................................................................................................................................................................................................................CTGGAACTATAAAAATGTGTGCCTCGCC............................................................................2811.00100000010000000000
........................................................................................TTAGCTACTCTGGTCG-------TATTT---------------------TATGTT...........................................................................................................................................................................................................................................................2711.00100000010000000000
.................................................................................................................................................................................................................................................................................................TCTGGAACTATAAAAATGTGTGCCT................................................................................2511.00100000010000000000
..................................................................................................................................................................................................................................................................................................CTGGAACTATAAAAATGTGTGCC.................................................................................2311.00100000000100000000
.......................................................................................................................................................................................................................TT-TCATGTGGTCGGAAACGCT.............................................................................................................................................................2111.00100000000100000000
..........................................................................................................................................................................................................................................................................................CGAGATCTCTGGAACTATAAAA..........................................................................................2260.17100000000100000000
............................................................................................................................................................................................................................................TTCCTTCTGCCTGTTA-----------CATAC..............................................................................................................................21200.10200000000020000000
...........................................................................................................................................................................................................................................CTTCCTTCTGCCTGTT...............................................................................................................................................16200.05100000010000000000
.................................................................................................................................................................................................................................................TCTGCCTGTTA-----------CATACT-----------..................................................................................................................17200.05100000010000000000
droSec2
TC-AGATCACATCTCCGAAGGAGATAACGG---ACCAGACGTCAATGGCGGAACGTAAGTATTTT---------------------TTTTAGCTACTCTGGTCG-------TATTT---------------------TATCTTGTTGAGGCGTTCATACGGACAGAATGA--------T-------------------------GTGTATATGTATT-TCATGTGGTCGGAAACGCTTACTTCTGCCTGTTA-----------CATACT-----------GTCGAGATCTCTGGAACTATAAAAATGTGTGCCACGCCCAC------ACTT------TTT--T-----------TAAAAC-----------G--TGAT---------ATCTTTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................CAGACGTCAATGGCGGAACGT..................................................................................................................................................................................................................................................................................................................................................2111.0010010
dm3
TC-AGATCACATCTCCGAAGGAGAAAACGG---ACCGGACGTCAATAGCGGAACGTAAGTATTTT--------------------TTTTTAGCTACTTTAGTCGGCATATGTATTTTATGGTTCACTACTTATAGTTCTTGGGGTCGAGGCGTTCATACGGACAGAATGA--------------------------TCAAGAATTTGTAAATGTATT-TTATATATTCGGAAACGCTTCCTTCTGCCTGTTA-----------CATTCT-----------GTC-------GAATGTGTGCCAC------------GTCCACACTTTTGCTA------AAT--GTGT------------------------------------TTTGTATCTTTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................TCATACGGACAGAATGA--------------------------TCAAGAATT.............................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................CATACGGACAGAATGA--------------------------TCAAGAATT.............................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002200100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................CGGACAGAATGA--------------------------TCAAGAATT.............................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TCATACGGACAGAATGA--------------------------TCAAGAAT..............................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................TACGGACAGAATGA--------------------------TCAAGAATT.............................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................CGGACAGAATGA--------------------------TCAAGAAT..............................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................G---ACCGGACGTCAATAGCG........................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................TTCATACGGACAGAATGA--------------------------TCAAGA................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................CTTTTGCTA------AAT--GTGT------------------------------------TTTGT.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TCAATAGCGGAACGTAAGTATTT..........................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................GGCGTTCATACGGACAGAATG.................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........................................................................................................................................................CATACGGACAGAATGA--------------------------TCAAGAATTTG...........................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................CTGTTA-----------CATTCT-----------GTC-------GAATGT..................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................................TTTT--------------------TTTTTAGCTACTTTAGTCGGCATA.............................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................CGGACGTCAATAGCGGAACGT..................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................CATACGGACAGAATGA--------------------------TCAAG.................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.................................................................................................TTAGTCGGCATATGTATTTTA....................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................TACGGACAGAATGA--------------------------TCAAGAAT..............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CATCTCCGAAGGAGAAAACGG---A........................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.........................AACGG---ACCGGACGTCAATAGCGGAACG...................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CGG---ACCGGACGTCAATAGCGG.......................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................CTACTTATAGTTCTTGGGGTC........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................TTCTGCCTGTTA-----------CATTCT-----------GTC-------GAAT....................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................TAGTTCTTGGGGTCGAGGCG..................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
........................................................................................TTAGCTACTTTAGTCGGCATA.............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................TTGGGGTCGAGGCGTTCATACGGAC.......................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................TTCATACGGACAGAATGA--------------------------TCAAGAATT.............................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AAGGAGAAAACGG---ACCGGACG.................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TCTCCGAAGGAGAAAACGG---ACCGGAC..................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................CTTATAGTTCTTGGGGTCGA......................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TTCACTACTTATAGTTCTTGGGT..........................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
........................................................................................................................................................TTCATACGGACAGAATGA--------------------------TC....................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TCATACGGACAGAATGA--------------------------TCAAGAA...............................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................TACGGACAGAATGA--------------------------TCAAG.................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.C-AGATCACATCTCCGAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTTTAGCTACTTTAGTCGGCA...............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TTA-----------CATTCT-----------GTC-------GAATGTGTGCCAC------------...............................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................ACCGGACGTCAATAGCGGAAC....................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CAGAATGA--------------------------TCAAGAATTTGTAAATG.....................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TGCCAC------------GTCCACACTTTTGCT................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................TAGCGGAACGTAAGTATTTT--------------------T....................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................CT-----------GTC-------GAATGTGTGCCAC------------GTC............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TCAATAGCGGAACGTAAGTAT............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
TC-AGATCACATCTCCGAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................................TTT--------------------TTTTTAGCTACTTTAGTC...................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................TTATATATTCGGAAACGCTTCCTTC.......................................................................................................................................................2530.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................TTATATATTCGGAAACGCTTCCTT........................................................................................................................................................2430.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................TATATTCGGAAACGCTTCCTTCTGC....................................................................................................................................................2530.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................TCCTTCTGCCTGTTA-----------CATTCT-----------..................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................TTCCTTCTGCCTGTTA-----------CATTC..............................................................................................................................2140.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TTCGGAAACGCTTCCTTCTGCCTGT................................................................................................................................................2580.3830000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................G---ACCGGACGTCAATAGCGATC.....................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TTCGGAAACGCTTCCTTCTGC....................................................................................................................................................21120.3340000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................TTCCTTCTGCCTGTTA-----------CATT...............................................................................................................................2060.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................AACGCTTCCTTCTGCCTGTTA-----------CATT...............................................................................................................................2540.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................CGCTTCCTTCTGCCTGTTA-----------CATTC..............................................................................................................................2440.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................ACCGGACGTCAATAGCGATC.....................................................................................................................................................................................................................................................................................................................................................2040.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TTCGGAAACGCTTCCTTCTGCCTG.................................................................................................................................................2480.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................TATATTCGGAAACGCTTCCTTC.......................................................................................................................................................2240.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................CGCTTCCTTCTGCCTGTTA-----------CA.................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................TTATATATTCGGAAACGCTTCCTTCC......................................................................................................................................................2650.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................TCGAGGCGTTCATACGGACAG.....................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................CGAGGCGTTCATACGGACAGA....................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................TTCCTTCTGCCTGTTA-----------CA.................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TTCGGAAACGCTTCCTTCTGCCTT.................................................................................................................................................24120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TTCGGAAACGCTTCCTTCTG.....................................................................................................................................................20130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AG------------------------------------------------------------TT----------------------TTTTTACCACTTAGTTAC-------CA----------------TCTCAGTTCCTGAGGTCCAGGCGTTCATACGGACAGAGGG-----------------------------------------ACGTACT-TTTTATAGTCGGAAACGCGTCCTTCTGCCTGTTA-----------AATACT-----------TTT-------CAACGAATCTAGT--------------GTACCCTTTTACTC------TAC--GAGTAACGGGTATAATAA-----------TA--AAT---------ACGTTTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
AGCGGATCGTATATCATAGGA-------------------------------AAGTCG-TAGTCT---------------------CTTTTGCAAATTGTGTCG-------AAATT---------------------TCTTGCTCAGGGTCATTT-----GCCGAGTCGA--------T-------------------------CTGGACAT------------------------GTCCGTCCGTTTGTCAGTCCGTTTGTCTGTCCGTCCGTATGAACGTCGAGATCTCAGTAACTATAAAAGTT--------------------------------AGAAAGT--TGAGAATAAAAAAT---------TT-----TTGTTTAATATTTTTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATACT-TTATAGGGTAGGAAACGCTTCCTTCTACCTGTTG-----------CATACT-----------TTT-------TAACGAATCTAAT--------------ATATCCTTTTACTC------TAC--GAATAACGGGTATAATAAG----------TAGCCCA---------ATCTTTTSizeHit CountTotal NormTotal
No Reads
droBia1
TT-TAAC--------------------------------------------------------------------------------------TGTCCTAGC-------------------------TCTTATAGTTTTCGAAATCTTAGCGTTCATACGGACAGAAAGACAGACGGAC-------------------------ATGGCTAGATACA-TTATGGGGTCGAAAACGCTTCCTTATACCTGTTA-----------CATACT-----------TTT-------CGACGAATCTAGT--------------AAACCCTTTTACTC------TAC--GAGTAACGGGTATAAAAATT--------------ATATCTTTGATGTTTATTSizeHit CountTotal NormTotal
No Reads
droTak1
CA-----------------------------------AATGTTGATATCAGAACTTTTGTATGTTGAAGGTGCGTTCGTCACTAGTTTTTTACCTCGTTAAGAGGTGTTTTTAT----------------------------------------------------------------T-------------------------TGATATATATACT-TTATGGGGTCGGAATCGCTTCCTTCTAGCTGTTA-----------CATACT-----------TTT-------GCACGAATCTAGT--------------ATACCCTTTTACTC------TAC--GAGTAACGGGTATAATAAATTTATTAA--TA--GAT---------CTATTTTSizeHit CountTotal NormTotal
No Reads
droEle1
AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATTGCTATGGGATCGAAAACGTTTTCTTCTGCCTGTTA-----------CATACT-----------TCT-------CAACAAATACAATA-------------ACACCCTTTTACTC------TTT--TAATGACGGGTATAATTAA-------------TAAT---------AACTTCGSizeHit CountTotal NormTotal
No Reads
droRho1
TT---------------------------------------------------------------------------------------------------------------------------------ATAGTTTACGAGATCTCAGCGTTCATACGGACAGACGGA--------CACGGCTAGTGATCCTGAACAA----GAATATATATACT-TTATAGGGTCGAAAACGCTTCCTTCTACCTGTTA-----------CATACT-----------TTT-------GCACGAATACAAA--------------ATACCCTTTTACTC------TAC--GAGTAACGGGTATAAAAA-----------TACAAGA---------ATCTTTTSizeHit CountTotal NormTotal
No Reads
droFic1
TC-CGACCACATTTCTGGAGGAGATAGCGGCGACGCAGATGTCAATGGAGAGAAGT--------------------------------TTAGCTATTCTGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACATCTSizeHit CountTotal NormTotal
No Reads
droKik1
TC-TGATCATATCTCTGGTGGAGATAGTGCCGACACTGATGTTCATGGGGAAAAGT--------------------------------TTTCTTACTCTGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATATTTSizeHit CountTotal NormTotal
No Reads
droWil2
TT--------------------------------------------------------------------------------------CTAGCT----------------------------------CTTATAGTCTCCGACATCTAGGAGTTCATACGGACAGAT------------------------------CAA----GTACGTATATACT-TTATAGGGTCGGAAAAGCTTTCTTCTGTCTGATA-----------CATACA-----------TTT-------CTGCAACTTTAA--------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................CTAGCT----------------------------------CTTATAGTCTCCGAC...........................................................................................................................................................................................................................................................2130.33101000
.................................................................................................................................................................................................................................GTCGGAAAAGCTTTCTTCTG.....................................................................................................................................................20200.05101000
droVir3
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATACT-TTATGGGGTCGAAAATGCTTCCTTCTGCCTGTTA-----------CATACA-----------TTTGGATTTTGCACAAATACAAT--------------ATACTCTTATACCCATTTTTAAT--GGGTTCAGGGTATAAAAA-----------TATTGAT---------ATCTGTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................TACA-----------TTTGGATTTTGCACAAATACAA............................................................................................262012.20244000000000000000000002000002240000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................TGTTA-----------CATACA-----------TTTGGATTTTGCAC....................................................................................................25200.408000000000000000000000000007000001000000000000000000000000000000
......................................................................................................................................................................................................................................................CTGTTA-----------CATACA-----------TTTGGATTTTGC......................................................................................................24200.357000000000000000000000000000043000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TACA-----------TTTGGATTTTGCACAA..................................................................................................20200.306000000000000000000000000000000000000006000000000000000000000000
.........................................................................................................................................................................................................................................................................TACA-----------TTTGGATTTTGCACAAA.................................................................................................21200.255000000000000000000000000500000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................ACA-----------TTTGGATTTTGCACAAATACAAT--------------.............................................................................26200.204004000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TTTTAAT--GGGTTCAGGGTATAAAAA-----------T......................26200.153000000000000000000000000000012000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TACA-----------TTTGGATTTTGCACAAATA...............................................................................................23200.153000000000000000000000003000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TTTTAAT--GGGTTCAGGGTATAAAAA-----------.......................25200.102000000000000000000000000000000200000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................CCATTTTTAAT--GGGTTCAGGGTAT.......................................24200.102000000000000000000000000000020000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TACTCTTATACCCATTTTTAAT--GG..................................................24200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................CATACA-----------TTTGGATTTTGCACA...................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................CCATTTTTAAT--GGGTTCAGGGT.........................................22200.051001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................TTCTGCCTGTTA-----------CATACA-----------TTTGG.............................................................................................................23200.051000000000000000000000000000000010000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................TTATACCCATTTTTAAT--GGGTTCAGGG..........................................27200.051000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................TTTTTAAT--GGGTTCAGGGTAT.......................................21200.051000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TACA-----------TTTGGATTTTGCAC....................................................................................................18200.051000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TTTAAT--GGGTTCAGGGTATAAAAA-----------T......................25200.051000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................CCTTCTGCCTGTTA-----------CATACA-----------TTTGGATT..........................................................................................................28200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................CTGCCTGTTA-----------CATACA-----------TTTGGATTTTGC......................................................................................................28200.051000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................CATACA-----------TTTGGATTTTGCACAAAT................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TTAAT--GGGTTCAGGGTATAAAAA-----------TAT....................26200.051000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................ATGCTTCCTTCTGCCTG.................................................................................................................................................17200.051000000000000000000000000000000000000000000000000000100000000000
..............................................................................................................................................................................................................................................CCTTCTGCCTGTTA-----------CA.................................................................................................................................16200.051000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................ACTCTTATACCCATTTTTAAT--GGG.................................................24200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................T--------------ATACTCTTATACCCATTTTTAAT--GG..................................................26200.051001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................A-----------TTTGGATTTTGCACAAATACAAT--------------A............................................................................25200.051000010000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................TTCCTTCTGCCTGTTA-----------CATACA-----------TTTG..............................................................................................................26200.051000000000000000000000000000010000000000000000000000000000000000
droMoj3
CA----------------------------------------------------------------------------------------------------------------------------------------------------------GACGGACAGGG----------------C---------TGATCAA----GAATATATATACT-TTGTGGGGTCTGCCACGCCTCCTTCTGCCTGTTA-----------CATACT-----------GTT-------AAGGCATTTGGAT--------------A------TTTGCCC------TCT--GAATTATTATTATATTATATATATTATTATATT---ATATTATATATTATTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................TTGGAT--------------A------TTTGCCC------TCT--GAATTATTAT..........................................27130.152200000
....................................................................................................................................................................................................................................TGCCACGCCTCCTTCTGCCTG.................................................................................................................................................21200.153000030
..........................................................................................................................................................................................................................................................................................................TGGAT--------------A------TTTGCCC------TCT--GAATTATTAT..........................................26130.081100000
..........................................................................................................................................................................................................................................................................................................TGGAT--------------A------TTTGCCC------TCT--GAATTATT............................................24130.081100000
..........................................................................................................................................................................................................................................................................................................TGGAT--------------A------TTTGCCC------TCT--GAATTATTATC.........................................27130.081100000
........................................................................................................................................................................................................................................................................................................TTTGGAT--------------A------TTTGCCC------TCT--GAATTAT.............................................25140.071100000
.........................................................................................................................................................................................................................................................................................................TTGGAT--------------A------TTTGCCC------TCT--GAATTAT.............................................24140.071100000
............................................................................................................................................................................................................................................................................T-----------GTT-------AAGGCATTTGGAT--------------A------TTTGCC................................................................24200.051100000
........................................................................................................................................................................................................................................................................................GTT-------AAGGCATTTGGAT--------------A------T.....................................................................18200.051100000
............................................................................................................................................................................................................................................................................T-----------GTT-------AAGGCATTTGGAT--------------A------TTT...................................................................21200.051100000
droGri2
AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTATATATACT-TTATGGGGTCGGAGATGCTTCCTTCTGCCTGTTA-----------CATAC------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 09:48 PM