dsi_4178

exon [x_12615967_12616229_+]; CDS [x_12615967_12616229_+]; intron [x_12616230_12616538_+]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTAACCGCCGGCGCCTCTCCCGGCATCAAGAGCATTCTCTCCATGATCAAGTAGGTGTTGGGGCAACATTTTTATTGCCCATGATGTGGCGCTTCTTCTTTCGAGAGTTATCAGTTAAAACCAGAGATTTGCCAGAGATATGGCCCAAATTGTGCCATTTTTGGGCTGACAACTTATGTAGTAGCTAGAAAGATAAACATTATTATTGTTTATTGCTCAGTAGTAGTATTTAACACTTTTTTTGGTAAAC ************************************************..((((((((((((((........))))))......))))))))..((((((..(((((.(((((......(((....)))(((((((..((((.((...)).)))))))))))))))).)))))............)))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	M025 embryo	M053 female body	SRR553485 Chicharo_3 day-old ovaries	M023 head
......................................CTCCATGATCAAGTAGGTGTTGGG............................................................................................................................................................................................	24	0	1	1.00	1	0	0	1	0	0
..............................................TCAACTAGGTGTTGGG............................................................................................................................................................................................	16	1	1	1.00	1	1	0	0	0	0
.TAACCGCTGGCGCCTCTCCCGGCA.................................................................................................................................................................................................................................	24	1	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................CATTTTTGGGCTGACAACTTATGT.......................................................................	24	0	1	1.00	1	0	1	0	0	0
...................CCGGCATCAAGAGCA........................................................................................................................................................................................................................	15	0	2	0.50	1	0	0	0	1	0
..............................................................................................................................................................................TATGTAGTAGCTAGATAC..........................................................	18	2	3	0.33	1	0	0	0	0	1
..............................................TCAACTAGGTGTTGGGA...........................................................................................................................................................................................	17	2	13	0.08	1	1	0	0	0	0

GATTGGCGGCCGCGGAGAGGGCCGTAGTTCTCGTAAGAGAGGTACTAGTTCATCCACAACCCCGTTGTAAAAATAACGGGTACTACACCGCGAAGAAGAAAGCTCTCAATAGTCAATTTTGGTCTCTAAACGGTCTCTATACCGGGTTTAACACGGTAAAAACCCGACTGTTGAATACATCATCGATCTTTCTATTTGTAATAATAACAAATAACGAGTCATCATCATAAATTGTGAAAAAAACCATTTG ************************************************..((((((((((((((........))))))......))))))))..((((((..(((((.(((((......(((....)))(((((((..((((.((...)).)))))))))))))))).)))))............)))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
..................GGGCCCTAGTTCTCGTGAGAG...................................................................................................................................................................................................................	21	2	2	0.50	1	1	0	0
.............................................................................................................................................................................AATGCTTCATCGATCTT............................................................	17	2	13	0.08	1	0	1	0
.............GGAGAGGGCCTAAGTTCGC..........................................................................................................................................................................................................................	19	3	16	0.06	1	0	0	1

Species	Coordinate	ID	Alignment
droSim2	x:12616180-12616429 +	dsi_4178	CTAACCGCCGGCGCCTCTCCCGGCATCAAGAGCATTCTCTCCATGATCAAGTAGGTGTT----------GGG-GCAA------------------CATTTT------------------------------------------------------------------------------TATT--GCCCATGATGTGGCGCTTCTTCTTTCGAGAGTT---------ATCAGTTAAAACCAGAGATTTGCCAGAGATATGGCC------------------------------------------------------------------------------------------------------------------------------------CA-AATTGTG-CCATTTT-TGGGCTGA-CAACTTATG-----TAGTAGCTAG---AAAGATAAACATTATTATT-G-T----TTATTGCTCAGTAGTAGTA--TTTA-A-----C-ACTTTTTTTGG------------------------------------------------------------------------TAAAC
droSec2	scaffold_21:1025535-1025785 +		CTAACCGCTGGCGCCTCTCCCGGCATCAAGAGCATTCTCTCCATGATCAAGTAGGTTTT----------GGG-GCAA------------------CATTTT------------------------------------------------------------------------------TATT--GGACATGATGTGGCGCTTCTTCTTTCGAGAGTT---------ATCAGTTAAAACCAGAGATTTGCCAGAGATATGGTC------------------------------------------------------------------------------------------------------------------------------------TA-AATTGTG-CGATTTT-TGTGTTGA-CAACTTATG-----TAGTAGCTAG---AAAGATAAACATTATTATT-G-T----TTATTGCTCAGTAGTAGTA--TTCAAA-----T-ACTTTTTTTTG------------------------------------------------------------------------TAGAT
dm3	chrX:13272259-13272544 +		CTAACCGGCGGTGCCTCTCCCGGCATCAAGAGCATTCTCTCCATGATCAAGTATGTCGC--------CAGGG-CCAA------------------CATTTT------------------------------------------------------------------------------TATT--GTCCATGATGTGGCGCTTCTTCTGTCGAGACTT---------ATCAGTTAAAACCAGAGATTTGCCAGAGATATGGCC------------------------------------------------------------------------------------------------------------------------------------CAAAATTGTG-CCATTTTTTGGGTTGA-CAACTTATG-----TGGCAGCCAG---ATAGATAAATATTATTATT-G-T----TTATTGCTCAGTAGTATTA--TTCAAA-----C-ACTTTGTTTATGAAATACTACTGAGCATTTACTAAGGAATTC-----------------------------------------TAAAT
droEre2	scaffold_4690:13597369-13597617 -		CTCACCGCCGGCGCCTCTCCCGGCATCAAGAGCATTCTCTCCATGATCAAGTACGTTCA----------GGC-CAAA------------------CATCTT------------------------------------------------------------------------------TATT--GCTCATGATATGGCGCTTCT---TTCGAGAGTT---------ATCAGTTAAATCCAGAGATTTGCGAGAGATATGGCC------------------------------------------------------------------------------------------------------------------------------------CA-AATTGGC-CCATTCT-TGGGTTGA-TAACTTCCA-----TAGCAGCATG---ATAGATAAATAATTTTAGGCG-T----TTATTGCTCAGGAGTATTA--TCAAAA-----C-CCTTTGTTTAT------------------------------------------------------------------------GAAAT
droYak3	X:7552524-7552774 +		CTCACTGCTGGCGCCTCTCCCGGCATCAAGAGCATTCTCTCCATGATCAAGTACGTCCG----------GGG-GCAA------------------CATCTT------------------------------------------------------------------------------TATGGGGCCCATGATATGGCGCTTCT---TTCGAGAGTT---------ATCAGTTAAAACCAGAGATTTACCAGAGATATGGCC------------------------------------------------------------------------------------------------------------------------------------CA-AATTGTC-ACTTTCT-TGGGCTGA-CAACTTCTG-----TGGTAGCAAG---ATAGATAACTATTATTAGGCG-T----TTATTGCTCAGTAGTATTT--TTAAAA-----C-ACTTTGTTTAT------------------------------------------------------------------------GAAAT
droEug1	scf7180000408958:332845-332912 -		CTAACCGCCGGTGCATCTCCCGGAATCAAGAGCATTCTCTCCATGATCAAGTAAGTTCA----------AAG-GCAA------------------TA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000298389:1249167-1249370 +		CTCACCGCCGGCGCCTCGCCCGGCATCAAGAGCATTCTGGCCATGATCAAGTAGGTCCA----------AGG-GCAAGTCAAGGCCGGAGAACACCTTCTG------------------------------------------------------------------------------GGCT--GACCAAGATAAGGCGCTTCTTCTTTTGGGAGAT---------AACTCGTAAAGCCAGAGATATGGC-GTTTTTCGGGC------------------------------------------------------------------------------------------------------------------------------------AA-AAGTGCC-CCACTTT-TGGCGGGC--AA-------------------------------------------------------------------------------------ACTCTGTGAGG------------------------------------------------------------------------AAGAT
droTak1	scf7180000414740:73490-73624 +		CTCACCGCCGGCGCCTCGCCAGGCATCAAGAGCATTCTCTCCATGATCAAGTAGGTTCA----------GGGTTTAA------------------CTAAAT------------------------------------------------------------------------------TCTG--GAGAAAGATAAGGCTTTTCT---TTTTGGAGACA-CA----TATATTTTAAAGCAGGAGATATGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491001:1743382-1743659 -		CTCACCGGCGGCGCTTCTCCCGGCATCAAGAGCATTCTCGCCATGATCAAGTATGCCGC----------AA----------ATTCCGGGAAA---CATTT----------------------------------------------------------------------------CTTTATT--GCAGTAGATAAGGCTTGCCT---TTCTGGAGCTA-TGTACATATTATATAAT-----------GCCAGAGATATGGCCTATATATCTCTTTA-------TTTTTTT----------------------------------------------------------------------------------------------------GGGCAA-AAGTGCT-TCAGTTT-AAGCATGCAAAACTTCTGAAAGAAGGTAGCA------GAGATAAATATTTTTATG-G-T----AT-------AGTTGAATTCTAT----ACAAGTTGTTTTTTTTTTT------------------------------------------------------------------------TAAAT
droRho1	scf7180000779333:1073906-1074171 +		CTCACCGGCGGCGCCTCTCCCGGCATCAAGAGCATTCTCTCCATGGTCAAGTATGTGTA----GCTCCAACG-CCAAAAAGGTTCCGGAAAA---CAGGT----------------------------------------------------------------------------CTTTATC--GCACCAGATAAGACACTTTT---TTCGGGAGCTA-CG----TATCTTGTATTGT----------------------------TATCTCTTTAATAACTCTGTTTTT----------------------------------------------------------------------------------------------------TGGCTA-AAGTGCC-CCACTTT-TAGCATGT-AAACTTATAAAAGAAGGTAGCAA-------GATAAATATGTTTACGGG------------CTCATTAAAAATG--TATG-G-----TATCTTTTT--------------------------------------------------------------------------------T
droFic1	scf7180000454050:1270855-1271103 +		CTCACCGCCGGCGCCTCGCCCGGAATCAAGAGCATTCTCTCCATGATCAAGTAGGTGTCCAAGC---CAAGG-CCAACGAAATTCCGGAAAA---CATTTT-----------------------------------------------------------------------------TTATG-GCCCAAAGATAAGAGGCTTCT---TTG-GTGGCT---------ATCTTTTAATGCCAGAGATATGCC-----------TCTTAAATCTCT------------TTTTT----------------------------------------------------------------------------------------------------TGGCAA-AAGTAGTTAAAGTTT-TAGGTAGA-ACATTTCTGGAAGGTGGTAGCAAG---G-------------------------------------------------------------------------------------------------AG--AGATAAATGCCAGATGATTGTT------------------------T
droKik1	scf7180000302696:841329-841546 -		CTCACCGCGGGCGCCTCTCCCGGCATCAAGACCATTCTGGCCATGATCAAGTAAGCAAA----G---CAAAG-CCAAAACAAATCCGGAAAT---TA---------------------------------------------------------------------------------------GGTGAAAGATAAGGGGAATTT---T-TGGGAGCTATCC----TAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGG-CAAGTTCTAAA---AAGTAGCATGCTGAT-AATAAACTTTTTTAGAAGCCTCATTAAATGTTGAGGGATTTT----AGAAG-----A-GGTCTGTTCCA------------------------------------------G-----------------------------AAGGC
droAna3	scaffold_13335:866634-866695 -		CTAACCGCTGGAGCCTCGCCCGGAATCAAGACCATCCTGTCGTTGGTGAAGTAGGTTCT----------GGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396006:121519-121581 -		CTGACGGCCGGTGCCTCGCCTGGAATCAAGACCATCCTCGCTTTGGTCAAGTAGGTTTT----------GGG-G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	XL_group1a:5982795-5982854 -		CTGACAGGCGGTGCCTCGCCCGGTATCAAGAGCATTCTCTCGCTGATCCAGTAAGTGGT----------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_11269:716-775 +		CTGACAGGCGGTGCCTCGCCCGGTATCAAGAGCATTCTCTCGCTGATCCAGTAAGTGGT----------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004963:1386438-1386492 +		CTGACAGGCGGTGCTTCTCCAGGCATTAAGAGTATCTTGTCACTTATCCAGTAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_12932:517583-517860 +		CTGACCGGTGGCGCCTCGCCAGGCATCAAGAGCATTCTCAGCTTGCTTAAGTGAGTATC----------TGA-ACGG------------------GCTTAATCTTGCCAGGCAAGTAGTTCGAATCCGATTCGTTACTTC--------------------------------------GTTCG-GTTCATACATAGATCAGA-------------------------------------------------------------------------------------TCTTAGACAACTGTGCATCCAGTTCTGGATTCGAAACTTGGCTCTACATATTTTTTAGTTCTTTAAAGAACAACTGAATCGAGAACCGAAAATATCGTGAATTGAAAGTC-AAGAACC-GAAC-------------------------------------------------------------------------------------C--GTTG-C-----A-ACTTTTTAAAG------------------------------------------------------------------------TAAAT
droMoj3	scaffold_6473:1022956-1023013 -		TTGACCGGTGGTGCGTCGCCGGGCATTAAGAGCATTCTGGCTCTGCTCAAGTGAGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_14853:267747-267983 +		TTGACTGGCGGCGCCTCGCCAGGCATTAAGAGCGTTCTGTCGCTCCTCAAGTGAGTAGA----------AAA-TCCC------------------AGTCTG----T----GCAAGTT-----------------------TACAGACAGACCAAATGCCAAATCCCAAATACTTTTCTTAATT--ACTGCAAATATTTGAAAT----------------------------------------------------ACTTCA------------------------------------------------------------------------------------------------------------------------------------ACTA-ATTTGAC-T-------------CA-TAACTGATAATAGTTAATTACAAG---G-------------------------------------------------------------------------------------------------AATTAAATAAATACTAAATACTTTTTGGCTTTGGTTTTGCTGGCAACAAAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CTAACCGCCGGCGCCTCTCCCGGCATCAAGAGCATTCTCTCCATGATCAAGTAGGTGTT----------GGG-GCAA------------------CATTTT------------------------------------------------------------------------------TATT--GCCCATGATGTGGCGCTTCTTCTTTCGAGAGTT---------ATCAGTTAAAACCAGAGATTTGCCAGAGATATGGCC------------------------------------------------------------------------------------------------------------------------------------CA-AATTGTG-CCATTTT-TGGGCTGA-CAACTTATG-----TAGTAGCTAG---AAAGATAAACATTATTATT-G-T----TTATTGCTCAGTAGTAGTA--TTTA-A-----C-ACTTTTTTTGG------------------------------------------------------------------------TAAAC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................CTCCATGATCAAGTAGGTGTT----------GGG-..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................CATTTT-TGGGCTGA-CAACTTATG-----T.................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CCGGCATCAAGAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	15	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

CTAACCGCTGGCGCCTCTCCCGGCATCAAGAGCATTCTCTCCATGATCAAGTAGGTTTT----------GGG-GCAA------------------CATTTT------------------------------------------------------------------------------TATT--GGACATGATGTGGCGCTTCTTCTTTCGAGAGTT---------ATCAGTTAAAACCAGAGATTTGCCAGAGATATGGTC------------------------------------------------------------------------------------------------------------------------------------TA-AATTGTG-CGATTTT-TGTGTTGA-CAACTTATG-----TAGTAGCTAG---AAAGATAAACATTATTATT-G-T----TTATTGCTCAGTAGTAGTA--TTCAAA-----T-ACTTTTTTTTG------------------------------------------------------------------------TAGAT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTCAGTAGTAGTA--TT...................................................................................................	19	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................AGAGATTTGCCAGAGATATGG..................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1
.TAACCGCTGGCGCCTCTCCCGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
........................ATCAAGAGCATTCTCTCCATGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
................................................................................................ATTTT------------------------------------------------------------------------------TATT--GGACATGATGTGG.................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1
................CTCCCGGCATCAAGAGCATTCTCTCCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0

dm3

CTAACCGGCGGTGCCTCTCCCGGCATCAAGAGCATTCTCTCCATGATCAAGTATGTCGC--------CAGGG-CCAA------------------CATTTT------------------------------------------------------------------------------TATT--GTCCATGATGTGGCGCTTCTTCTGTCGAGACTT---------ATCAGTTAAAACCAGAGATTTGCCAGAGATATGGCC------------------------------------------------------------------------------------------------------------------------------------CAAAATTGTG-CCATTTTTTGGGTTGA-CAACTTATG-----TGGCAGCCAG---ATAGATAAATATTATTATT-G-T----TTATTGCTCAGTAGTATTA--TTCAAA-----C-ACTTTGTTTATGAAATACTACTGAGCATTTACTAAGGAATTC-----------------------------------------TAAAT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....CGGCGGTGCCTCTCCCGGCATCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12
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.................................................................................................................................................................................................TGTGGCGCTTCTTCTGTCGAGAC...............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................TCAAGAGCATTCTCTCCATGATCAACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................CATTCTCTCCATGATCAAGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATTATT-G-T----TTATT.....................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................ATTCTCTCCATGATCAACGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CTCACCGCCGGCGCCTCTCCCGGCATCAAGAGCATTCTCTCCATGATCAAGTACGTTCA----------GGC-CAAA------------------CATCTT------------------------------------------------------------------------------TATT--GCTCATGATATGGCGCTTCT---TTCGAGAGTT---------ATCAGTTAAATCCAGAGATTTGCGAGAGATATGGCC------------------------------------------------------------------------------------------------------------------------------------CA-AATTGGC-CCATTCT-TGGGTTGA-TAACTTCCA-----TAGCAGCATG---ATAGATAAATAATTTTAGGCG-T----TTATTGCTCAGGAGTATTA--TCAAAA-----C-CCTTTGTTTAT------------------------------------------------------------------------GAAAT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..CACCGCCGGCGCCTCTCCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
........................ATCAAGAGCATTCTCTCCATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
CTCACCGCCGGCGCCTCTCCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
............................AGAGCATTCTCTCCATGATCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.....................GGCATCAAGAGCATTCTCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
...........CGCCTCTCCCGGCATCAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
.....................GGCATCAAGAGCATTCTCTCCATGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
CTCACCGCCGGCGCCTCTCCCGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0

droYak3

CTCACTGCTGGCGCCTCTCCCGGCATCAAGAGCATTCTCTCCATGATCAAGTACGTCCG----------GGG-GCAA------------------CATCTT------------------------------------------------------------------------------TATGGGGCCCATGATATGGCGCTTCT---TTCGAGAGTT---------ATCAGTTAAAACCAGAGATTTACCAGAGATATGGCC------------------------------------------------------------------------------------------------------------------------------------CA-AATTGTC-ACTTTCT-TGGGCTGA-CAACTTCTG-----TGGTAGCAAG---ATAGATAACTATTATTAGGCG-T----TTATTGCTCAGTAGTATTT--TTAAAA-----C-ACTTTGTTTAT------------------------------------------------------------------------GAAAT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................ATCAAGAGCATTCTCTCCATGATCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2
CTCACTGCTGGCGCCTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0

droEug1

CTAACCGCCGGTGCATCTCCCGGAATCAAGAGCATTCTCTCCATGATCAAGTAAGTTCA----------AAG-GCAA------------------TA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CTCACCGCCGGCGCCTCGCCCGGCATCAAGAGCATTCTGGCCATGATCAAGTAGGTCCA----------AGG-GCAAGTCAAGGCCGGAGAACACCTTCTG------------------------------------------------------------------------------GGCT--GACCAAGATAAGGCGCTTCTTCTTTTGGGAGAT---------AACTCGTAAAGCCAGAGATATGGC-GTTTTTCGGGC------------------------------------------------------------------------------------------------------------------------------------AA-AAGTGCC-CCACTTT-TGGCGGGC--AA-------------------------------------------------------------------------------------ACTCTGTGAGG------------------------------------------------------------------------AAGAT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CTCACCGCCGGCGCCTCGCCAGGCATCAAGAGCATTCTCTCCATGATCAAGTAGGTTCA----------GGGTTTAA------------------CTAAAT------------------------------------------------------------------------------TCTG--GAGAAAGATAAGGCTTTTCT---TTTTGGAGACA-CA----TATATTTTAAAGCAGGAGATATGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTCACCGGCGGCGCTTCTCCCGGCATCAAGAGCATTCTCGCCATGATCAAGTATGCCGC----------AA----------ATTCCGGGAAA---CATTT----------------------------------------------------------------------------CTTTATT--GCAGTAGATAAGGCTTGCCT---TTCTGGAGCTA-TGTACATATTATATAAT-----------GCCAGAGATATGGCCTATATATCTCTTTA-------TTTTTTT----------------------------------------------------------------------------------------------------GGGCAA-AAGTGCT-TCAGTTT-AAGCATGCAAAACTTCTGAAAGAAGGTAGCA------GAGATAAATATTTTTATG-G-T----AT-------AGTTGAATTCTAT----ACAAGTTGTTTTTTTTTTT------------------------------------------------------------------------TAAAT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CTCACCGGCGGCGCCTCTCCCGGCATCAAGAGCATTCTCTCCATGGTCAAGTATGTGTA----GCTCCAACG-CCAAAAAGGTTCCGGAAAA---CAGGT----------------------------------------------------------------------------CTTTATC--GCACCAGATAAGACACTTTT---TTCGGGAGCTA-CG----TATCTTGTATTGT----------------------------TATCTCTTTAATAACTCTGTTTTT----------------------------------------------------------------------------------------------------TGGCTA-AAGTGCC-CCACTTT-TAGCATGT-AAACTTATAAAAGAAGGTAGCAA-------GATAAATATGTTTACGGG------------CTCATTAAAAATG--TATG-G-----TATCTTTTT--------------------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CTCACCGCCGGCGCCTCGCCCGGAATCAAGAGCATTCTCTCCATGATCAAGTAGGTGTCCAAGC---CAAGG-CCAACGAAATTCCGGAAAA---CATTTT-----------------------------------------------------------------------------TTATG-GCCCAAAGATAAGAGGCTTCT---TTG-GTGGCT---------ATCTTTTAATGCCAGAGATATGCC-----------TCTTAAATCTCT------------TTTTT----------------------------------------------------------------------------------------------------TGGCAA-AAGTAGTTAAAGTTT-TAGGTAGA-ACATTTCTGGAAGGTGGTAGCAAG---G-------------------------------------------------------------------------------------------------AG--AGATAAATGCCAGATGATTGTT------------------------T	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CTCACCGCGGGCGCCTCTCCCGGCATCAAGACCATTCTGGCCATGATCAAGTAAGCAAA----G---CAAAG-CCAAAACAAATCCGGAAAT---TA---------------------------------------------------------------------------------------GGTGAAAGATAAGGGGAATTT---T-TGGGAGCTATCC----TAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGG-CAAGTTCTAAA---AAGTAGCATGCTGAT-AATAAACTTTTTTAGAAGCCTCATTAAATGTTGAGGGATTTT----AGAAG-----A-GGTCTGTTCCA------------------------------------------G-----------------------------AAGGC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CTAACCGCTGGAGCCTCGCCCGGAATCAAGACCATCCTGTCGTTGGTGAAGTAGGTTCT----------GGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
CTAACCGCTGGAGCCTCGCCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	1	1
..........................CAAGACCATCCTGTCGTTGGTGAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..AACCGCTGGAGCCTCGCCCGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
CTAACCGCTGGAGCCTCGCCCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..............CTCGCCCGGAATCAAGACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..........................CAAGACCATCCTGTCGTTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
........................ATCAAGACCATCCTGTCGTTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.....CGCTGGAGCCTCGCCCGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...............................CCATCCTGTCGTTGGTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
......GCTGGAGCCTCGCCCGGAATCAAGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
..............CTCGCCCGGAATCAAGACCATCCTGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0
..........................CAAGACCATCCTGTCGTTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
............................AGACCATCCTGTCGTTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
CTAACCGCTGGAGCCTCGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.TAACCGCTGGAGCCTCGCCCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1

droBip1

CTGACGGCCGGTGCCTCGCCTGGAATCAAGACCATCCTCGCTTTGGTCAAGTAGGTTTT----------GGG-G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

CTGACAGGCGGTGCCTCGCCCGGTATCAAGAGCATTCTCTCGCTGATCCAGTAAGTGGT----------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................CGCCCGGTATCAAGAGCATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
............................AGAGCATTCTCTCGCTGATCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CTGACAGGCGGTGCCTCGCCCGGTATCAAGAGCATTCTCTCGCTGATCCAGTAAGTGGT----------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
CTGACAGGCGGTGCCTCGCCCGGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
................CGCCCGGTATCAAGAGCATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0

droWil2

CTGACAGGCGGTGCTTCTCCAGGCATTAAGAGTATCTTGTCACTTATCCAGTAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............TTCTCCAGGCATTAAGAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	1	0	1	0
........................ATTAAGAGTATCTTGTCACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	2	0
...............TCTCCAGGCATTAAGAGTATCTTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	1	0	1
.TGACAGGCGGTGCTTCTCCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
..GACAGGCGGTGCTTCTCCAGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
CTGACAGGCGGTGCTTCTCCAGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
.........................TTAAGAGTATCTTGTCACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..GACAGGCGGTGCTTCTCCAGGCATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
........................ATTAAGAGTATCTTGTCACTTATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
...................CAGGCATTAAGAGTATCTTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
............GCTTCTCCAGGCATTAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
........................ATTAAGAGTATCTTGTCACTTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
CTGACAGGCGGTGCTTCTCCAGGCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0

droVir3

CTGACCGGTGGCGCCTCGCCAGGCATCAAGAGCATTCTCAGCTTGCTTAAGTGAGTATC----------TGA-ACGG------------------GCTTAATCTTGCCAGGCAAGTAGTTCGAATCCGATTCGTTACTTC--------------------------------------GTTCG-GTTCATACATAGATCAGA-------------------------------------------------------------------------------------TCTTAGACAACTGTGCATCCAGTTCTGGATTCGAAACTTGGCTCTACATATTTTTTAGTTCTTTAAAGAACAACTGAATCGAGAACCGAAAATATCGTGAATTGAAAGTC-AAGAACC-GAAC-------------------------------------------------------------------------------------C--GTTG-C-----A-ACTTTTTAAAG------------------------------------------------------------------------TAAAT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..GACCGGTGGCGCCTCGCCAGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GCATCAAGAGCATTCTCAGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CAGGCATCAAGAGCATTCTCAGCTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..GACCGGTGGCGCCTCGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............GCCTCGCCAGGCATCAAGAGCATTCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................ATCAAGAGCATTCTCAGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CTCGCCAGGCATCAAGAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GTGGCGCCTCGCCAGGCATCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................AAGAGCATTCTCAGCTTGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CAAGAGCATTCTCAGCTTGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CCGGTGGCGCCTCGCCAGGCATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................CAAGAGCATTCTCAGCTTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................AGGCATCAAGAGCATTCTCAGCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CAAGAGCATTCTCAGCTTGCTTAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CTGACCGGTGGCGCCTCGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................AGGCATCAAGAGCATTCTCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................CATCAAGAGCATTCTCAGCTTGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TCAAGAGCATTCTCAGCTTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................GTC-AAGAACC-GAAC-------------------------------------------------------------------------------------C--GTTG-C-----..........................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................AAGAGCATTCTCAGCTTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CTGACCGGTGGCGCCTCGCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ACCGGTGGCGCCTCGCCAGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............GCCTCGCCAGGCATCAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....CGGTGGCGCCTCGCCAGGCATCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TTGACCGGTGGTGCGTCGCCGGGCATTAAGAGCATTCTGGCTCTGCTCAAGTGAGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.TGACCGGTGGTGCGTCGCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
..........GTGCGTCGCCGGGCATTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.....CGGTGGTGCGTCGCCGGGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..........GTGCGTCGCCGGGCATTAAGAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
....................GGGCATTAAGAGCATTCTGGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..GACCGGTGGTGCGTCGCCGGGCATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..GACCGGTGGTGCGTCGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0

droGri2

TTGACTGGCGGCGCCTCGCCAGGCATTAAGAGCGTTCTGTCGCTCCTCAAGTGAGTAGA----------AAA-TCCC------------------AGTCTG----T----GCAAGTT-----------------------TACAGACAGACCAAATGCCAAATCCCAAATACTTTTCTTAATT--ACTGCAAATATTTGAAAT----------------------------------------------------ACTTCA------------------------------------------------------------------------------------------------------------------------------------ACTA-ATTTGAC-T-------------CA-TAACTGATAATAGTTAATTACAAG---G-------------------------------------------------------------------------------------------------AATTAAATAAATACTAAATACTTTTTGGCTTTGGTTTTGCTGGCAACAAAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_4178

x:12616230-12616379 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-33.0	-32.9	-32.9