ID:

dsi_4142

 Coordinate:

3l:8241319-8241468 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-4.7 -4.3 -4.2

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AAAAGTGCTAGGGAAATTAGTTTTTTAATGGCGAATTTACGTTTTTCTCGGTGCCCAGCCAGATTTTCTACGCTTCTGTGTGTGTGTGTGTGCGTTTGAGGGTACCAAATTTGCAGCCCGAAAAAAAAAGTTGAGGAAGAAAATTGGTTTTTTTCTACCAACTTGGCACTTTGGTGACTGTGCGTGTGTGTGTCTGTGTCTGCGGGGTTGCTAAATTTACGCAAAAAACCACAACAATAATGTGTAAAAA
**************************************************************************************************************************************************...................((((..........)))).......************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M024
male body		 O002
Head
 GSM343915
embryo
 M053
female body
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.........................................................................................................................................................................TTTGGTGACTGTGCGTGTGTG............................................................ 21 0 1 3.00 3 3 0 0 0 0 0 0 0
..................................................................................................................................................GTTTTTTTCTACCAACTTG..................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0
....................................................TCCCAGCCAGATTTGCTGCGCTT............................................................................................................................................................................... 23 3 1 1.00 1 0 0 0 1 0 0 0 0
.......................................................................................................................................................................ACTTTGGTGACTGTGCGTGTTT............................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................TTGGTGACTGTGCGTGTGTG............................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................ATTTACGTTTTTCTCGGTGCC................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................................TGTGTGTGTCTGTGTCTGCG.............................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0
........................................................................................................................................................................CTTTGGTGACTGTGCGTGTGTA............................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0
...............ATTAGTTTTTTAATGGCGAATTTACGTTT.............................................................................................................................................................................................................. 29 0 1 1.00 1 0 0 0 0 1 0 0 0
...............................................................................................TTGAGGGTACCAAATTTGCA....................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0
..........................................................................................................................................................................TTGGTGACTGTGCGTGTGTGT........................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................................................GTTGATGAAGAAAATTGGTC..................................................................................................... 20 2 2 0.50 1 0 1 0 0 0 0 0 0
......................................................................................TGTGGGCGTTTGAAGGTA.................................................................................................................................................. 18 2 10 0.10 1 0 0 0 0 0 0 1 0
...........................................................................................................................AAAAATGGTGATGAAGAAAAT.......................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 1
......................................................................................................................................TGAGGATAATTGGTTTTTT................................................................................................. 19 3 20 0.05 1 0 0 0 1 0 0 0 0

Anti-sense strand reads

TTTTCACGATCCCTTTAATCAAAAAATTACCGCTTAAATGCAAAAAGAGCCACGGGTCGGTCTAAAAGATGCGAAGACACACACACACACACGCAAACTCCCATGGTTTAAACGTCGGGCTTTTTTTTTCAACTCCTTCTTTTAACCAAAAAAAGATGGTTGAACCGTGAAACCACTGACACGCACACACACAGACACAGACGCCCCAACGATTTAAATGCGTTTTTTGGTGTTGTTATTACACATTTTT
************************************************************...................((((..........)))).......************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 O002
Head
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
..................................................CACGGGTCGGTCTAAAAGATG................................................................................................................................................................................... 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
..................................................AACGGGTCGGTCTAAAAGGTGC.................................................................................................................................................................................. 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................ACTGACACGCACACACACAG........................................................ 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................GTTTTTTGGTGTTGTTATTAC........ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................CGCACACACACAGACACAG.................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................TACGGGTCGGTCTGAAAGAT.................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................ATGCAAAAAGAGCCACGGGTC................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................GCGAAGACACACACACACACA............................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..................................................TACGGGTCGGTCTAAAAGATG................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................GTCGGGCTTTTTTTTTCAA...................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................GGTCGGTCTAGAAGATGCGAA............................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................AAAAAAAGATGGTTGA....................................................................................... 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................ACGGGTCGGTCTGAAAGGT.................................................................................................................................................................................... 19 2 3 0.67 2 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................ATGGTTGAACCGTGAG............................................................................... 16 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................ACGCATACTGCCATGGTT.............................................................................................................................................. 18 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0
................................................................................................ACTGCCATGGTTTCAACGT....................................................................................................................................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................TATGGTTTGAACGTCGGGC.................................................................................................................................. 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ATGCGCTTTATGGTGTTG............... 18 2 7 0.43 3 0 3 0 0 0 0 0 0 0 0
.................................................CAACGGTTCGGTCTAAAAGAG.................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................................ATGCGCTTTATGGTGTT................ 17 2 20 0.25 5 0 5 0 0 0 0 0 0 0 0
..........................................................................................ACGCATACTGCCATGGT............................................................................................................................................... 17 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................AAAAAAGATGTTTGGACCGT.................................................................................. 20 2 6 0.17 1 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................AAAAAGGATGGTTGAACT.................................................................................... 18 2 12 0.17 2 0 0 0 0 0 0 0 2 0 0
...........................................................................................................................................TTTTAACCAAAACAAGCT............................................................................................. 18 2 20 0.15 3 0 0 3 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ATGCGCTTTATGGTGTTGGT............. 20 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................AAAAAAGATGTTTGGACC.................................................................................... 18 2 10 0.10 1 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................ATGCGCTTTATGGTGT................. 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ATGCGCTTTATGGTGTTGG.............. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................AAAAAAAGATGGTAG........................................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Generated: 04/24/2015 at 10:46 AM