ID:

dsi_4112

 Coordinate:

2r:20302643-20302792 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.9 -17.8 -17.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCAGCTGCTCTAGTAAATATGCGGCTCCCTCTTACCAAGTAAATCCCAGTCTGGGATGGCAGCGCAGTGGCAATTTTCTGTATAAGAATGTGCACATATGCATATGCATGTGCACATGTGTACATCAGTCTGTACATCACTTGCGAAAAAGTGGCAGGGTGCAAACAATTGGCAACAGACACTAATCGAGAATCTTGCAGTGAGATCAGCATTTATTGAACAATGGACGCCCCAGCCGAAGGACACGTTG
************************************************************************************************************(((((.((..(((....((.(((((....(((((......)))))))))).))...)))..)))).)))...................****************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 M024
male body		 SRR902009
testis
 M025
embryo
 M023
head
 SRR618934
dsim w501 ovaries
 O001
Testis
 GSM343915
embryo
.....................................................................................................................................................................................................................TATTGAACAATGGACGCCCCAGC.............. 23 0 1 19.00 19 5 10 0 3 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TGAGATCAGCATTTATTGAACAATGGA....................... 27 0 1 18.00 18 7 4 0 3 2 2 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TTTATTGAACAATGGACGCCCCAGC.............. 25 0 1 11.00 11 7 4 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTGAACAATGGACGCCCCAGCCGAAGGA....... 28 0 1 10.00 10 4 4 0 0 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGAACAATGGACGCCCCAGCCGAAGGA....... 27 0 1 10.00 10 5 3 0 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TATTGAACAATGGACGCCCCAGCCGAA.......... 27 0 1 8.00 8 3 0 3 0 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TGGACGCCCCAGCCGAAGGACACGTT. 26 0 1 8.00 8 0 0 7 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................TATTGAACAATGGACGCCCCAGCCGA........... 26 0 1 7.00 7 3 0 0 1 2 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ATTGAACAATGGACGCCCCAGCCGAAGGA....... 29 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TTATTGAACAATGGACGCCCCAGCCGAA.......... 28 0 1 4.00 4 2 0 0 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TGGACGCCCCAGCCGAAGGACACGT.. 25 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGAACAATGGACGCCCCAGCCGAAGGAC...... 28 0 1 3.00 3 0 1 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TTTATTGAACAATGGACGCCCCAG............... 24 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTGAACAATGGACGCCCCAGCCGAAGGAC...... 29 0 1 3.00 3 0 2 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................TGAGATCAGCATTTATTGAACAATGG........................ 26 0 1 3.00 3 1 0 0 1 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................TTATTGAACAATGGACGCCCCAGC.............. 24 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TATTGAACAATGGACGCCCCAGCCGAAGG........ 29 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................GCAACAGACACTAATCGAGAATCTT...................................................... 25 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 2 0 0
.....................................................................................................................................................................................................................TATTGAACAATGGACGCCCCAGCCG............ 25 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TGGACGCCCCAGCCGAAGGACACG... 24 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................................TTTATTGAACAATGGACGCCCCAGCCGA........... 28 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TTATTGAACAATGGACGCCCCAGCCGA........... 27 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCAGCATTTATTGAACAATGGACGCC................... 26 0 1 2.00 2 0 0 1 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................TGGACGCCCCAGCCGAAGGAC...... 21 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0
............................................................................................................................................................................................................................CAATGGACGCCCCAGCCGAAG......... 21 0 1 2.00 2 0 0 0 0 0 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................GATCAGCATTTATTGAACAATGGACGCCC.................. 29 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0
...................................................................................................................................................................................................................TTTATTGAACAATGGACGCC................... 20 0 1 2.00 2 0 0 0 0 0 0 1 0 0 1 0 0 0
......................................................................................................................................................................................................................ATTGAACAATGGACGCCCCA................ 20 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0
...................................................................................................................................................................................................................TTTATTGAACAATGGACGCCC.................. 21 0 1 2.00 2 0 0 0 0 0 0 1 0 1 0 0 0 0
..............................................................................................................................................................................................................................ATGGACGCCCCAGCCGAAGGA....... 21 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0
...................................................................................................................................................................................................................TTTATTGAACAATGGACGCCCCAGCC............. 26 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0
........................................................................................................................................................................................................................TGAACAATGGACGCCCCAGCCGAAGGACA..... 29 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................CAACAGACACTAATCGAGA........................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TATTGAACAATGGACGCCC.................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................AATGGACGCCCCAGCCGAAGGACACAA.. 27 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TTATTGAACAATGGACGCC................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................................ATGGACGCCCCAGCCGAAGG........ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.......CTCTAGTAAATATGCGGCT................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................AGCATTTATTGAACAATGGACGCCCC................. 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................GTGAGATCAGCATTTATTGAACAATGGA....................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CGCCCCAGCCGAAGGAC...... 17 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TGGACGCCCCAGCCGAAGGACA..... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................TGAACAATGGACGCCCCAGCCG............ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TATTGAACAATGGACGCCCCAGCCGAAG......... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ATGGACGCCCCAGCCGAAGGACACGTT. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CGAACAATGGACGCCCCAGCCGAAGGA....... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCAGCATTTATTGAACAATGGACGCCC.................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TATTGAACAATGGACGCCCCAGCCGAAGGA....... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AACAATGGACGCCCCAGCCGAAG......... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ATTGAACAATGGACGCCACAGCCGAAGG........ 28 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCAGCATTTATTGAACAATGGACGCCCC................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TGGACGCCCCAGCCGAAG......... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................TTATTGAACAATGGACGCTTCAGC.............. 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GCCCCAGCCGAAGGACA..... 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TTATTGAACAATGGACGCCTTAGCCGAA.......... 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GCATTTATTGAACAATGGACGCCCCAGC.............. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGTTAACAATGGACGCCCCAGCCGAAG......... 27 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ATTGAACAATGGACGCCCCAGC.............. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AGATCAGCATTTATTAAACAATGGA....................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GAGATCAGCATTTATTGAACAATGGAC...................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................TCAGCATTTATTGAACAATGGACGCCCCA................ 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CATTTATTGAACAATGGACGCCCCAGCCG............ 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGAACAATGGACGCCCCAGCCGAAGG........ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTGAACAATGGACGCCCCAGCCGA........... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ATGGACGCCCCAGCCGAAGGAC...... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................................TTTATTGAACAATGGACGCCCC................. 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTGAACAATGGACGCCCCAGCCGAAGGACA..... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTGAACAATGGACGCCCCAGCCGAAGG........ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ATTTATTGAACAATGGACGCCCCAGCCGAA.......... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ATTGAACAATGGACGCCC.................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.......CTCTAGTAAATATGCGAC................................................................................................................................................................................................................................. 18 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................AATGGACGCCCCAGCCGAAGGAC...... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ATTGAACAATGGACGCCCCAGCCGA........... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CAGCATTTATTGAACAATGGACGCC................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................TGTGCACATGTGTACATCAGTCTGTA.................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CAATGGACGCCCCAGCCGAAGGA....... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TATTCAACAATGGACGCCCCAGCCGAAG......... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................ACAATGGACGCCCCAGCCGAAGGACA..... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GATCAGCATTTATTGAACAA........................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.......CTCTAGTAAATATGCGGC................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................AATGGACGCCCCAGCCGAAGGACACGTT. 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TTATTGAACAATGGACGCCCCAGCCGAAG......... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ATTTATTGAACAATGGACGCCCCAGCC............. 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................AACAATGGACGCCCCAGCCG............ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................TTATTGAACAATGGACGCCC.................. 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................TGAACAATGGACGCCCCAGCCGAAGGACACGT.. 32 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TATTGAACAATGGACGACCCAGC.............. 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ACGCCCCAGCCGAAGGA....... 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CATTTATTGAACAATGGACGC.................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................TTGAACAATGGACGCCC.................. 17 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCAGCATTTATTGAACAATGGACGC.................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTGAACAATGGACGCCCC................. 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CATTTATTGAACAATGGACGCC................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................CATTTATTGAACAATGGACG..................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................TTTATTGAACAATGGACGCCCCCGCC............. 26 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................TGAACAATGGACGCCCCAGCCGAAGGAA...... 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ATTGAACAATGGACG..................... 15 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGGGATGGCAGCGCGGTGGCGT................................................................................................................................................................................. 22 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................ATCGAGAATCTTGGAGGTAG.............................................. 20 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................GAATGTGATCATATGCATA.................................................................................................................................................. 19 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................ACAAGAATGTGATCATATGCA.................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TTTTTTAACAATGGACGTCC.................. 20 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ATTGATCAATGGATGCCC.................. 18 2 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................CGTAAATCCGGGTCTGGGA.................................................................................................................................................................................................. 19 3 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................GTGGCTTTTTTCCGTATAAG.................................................................................................................................................................... 20 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................GTAAGTCCCCGTCGGGGA.................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

AGTCGACGAGATCATTTATACGCCGAGGGAGAATGGTTCATTTAGGGTCAGACCCTACCGTCGCGTCACCGTTAAAAGACATATTCTTACACGTGTATACGTATACGTACACGTGTACACATGTAGTCAGACATGTAGTGAACGCTTTTTCACCGTCCCACGTTTGTTAACCGTTGTCTGTGATTAGCTCTTAGAACGTCACTCTAGTCGTAAATAACTTGTTACCTGCGGGGTCGGCTTCCTGTGCAAC
******************************************************(((((.((..(((....((.(((((....(((((......)))))))))).))...)))..)))).)))...................************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
.......................................................................................................................................................................................................................................GGTCGGCTTCCTGTGCAAC 19 0 1 3.00 3 3 0 0 0 0 0 0
..............................................................................................................................................................................................................................TACCTGCGGGGTCGGCTTCCT....... 21 0 1 2.00 2 2 0 0 0 0 0 0
...............................................................................................................................................................................................................................TTTTGCGGGGTCGGCTTCCTGT..... 22 3 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................TGCGGGGTCGGCTTCCTGTGC... 21 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTACCTGCGGGGTCGGCTT.......... 20 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................TTGCGGGGTCGGCTTCCTGTGCA.. 23 1 1 1.00 1 1 0 0 0 0 0 0
AGTCGACGAGCTCATTTATAC..................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................CACGTGTACACATGTAGTCAG........................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................TGTTACCTGCGGGGTCGGCTT.......... 21 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................TCGTAAATAACTTGTTACCTG...................... 21 0 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................TTTTTGCGGGGTCGGCTTCCTGT..... 23 3 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................TTTACCTGCGGGGTCGGCTT.......... 20 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTGCGGGGTCGGCTTCGG....... 18 2 7 0.29 2 0 0 0 1 1 0 0
.................................................................................TGTTCTTACACTAGTATACGT.................................................................................................................................................... 21 3 4 0.25 1 0 0 1 0 0 0 0
........................................................ACCGTCGAGTCACCG................................................................................................................................................................................... 15 1 16 0.06 1 0 0 0 0 0 1 0
.................................................................................................................................................................................CTGTGCTTGGCTGTTAGAA...................................................... 19 3 16 0.06 1 0 0 1 0 0 0 0
.........................AGGGATAGTGCTTCATTTA.............................................................................................................................................................................................................. 19 3 17 0.06 1 0 0 1 0 0 0 0
.....................TCCGAGGGAGGATGG...................................................................................................................................................................................................................... 15 2 20 0.05 1 0 0 0 0 0 1 0
AGCCGGCGAGATCAT........................................................................................................................................................................................................................................... 15 2 20 0.05 1 0 0 0 0 0 0 1
.................................................................................................................................................TTTTTCACCGTGACAGGTTT..................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:20302593-20302842 - dsi_4112 TCAGCTGCTCTAGTAAATAT------------GCGGCTCCCTCTTACCAAGTAAATCCCAGTCTG-GGATGGCAGCGCAGTGGCAATTTT------CTGTATA----AGAATGTGCACA-----------------------TATGCATATGCATGTGCACATGTGTACATCAGT------------------------CT-GTACATCACT---------T-------G-------------CGAAA-----------AAG---TGGCAGGGT--------------GCAAACAATTG-----GCAACA--GA------------CACTAATCGAG-----------AATCTTGCAGTGAGA---TCAGCA---TTTATT----GAACAA---TGGACGCCCCAGCCGAAGGACACGTTG
droSec2 scaffold_9:3085808-3086071 - TCAGCTGCTCGAGTAAATAT------------GCGGCTCCCTCTTACCAAGTAAATCCCAGTCTG-GGATGGCAGCGCAGTGGCAATTTT------CTGTATA----AGAATGTGCACATATGCAT---------GTGCACATATGCATATGCATGTGCACATGTGTACATCAGT------------------------CT-GTACATCACT---------T-------G-------------CGAAA-----------AAG---TTGCAGGAT--------------GCAAACAATTG-----GCAACA--GA------------CACTAATCGAG-----------AATCTTGCAGTGAGA---TCAGCA---TTTATT----GAACAA---TGGACGCCCCAGCCGAAGGACACGTTG
dm3 chr2R:19794196-19794444 - TCAGCTGCTCGAGTAAATAT------------GCGGCTCCCTTTTCGCAAGTGCA-CCCAGTCTG-GGATGGCAGCGCAGTGGGAATTTT------CTGTATA----AGAATGTGCACA-----------------------TATGCATATGCATGTGCACATGTGTACATCAGT------------------------CT-GTACATCACT---------T-------G-------------CGAAA-----------ACG---TTTCGGGGT--------------GCAAACAATTG-----CCAACA--GA------------CACTAATCGAG-----------AATCTTGCAGTGAGA---TCAGCA---TTTATT----GAACAA---TGGACGCCCCAGCCGAAGGACACGTTG
droEre2 scaffold_4845:21174463-21174709 - TCAGTTGTTCGAGTAAATAT------------GTGGCTCACTTTTCGCATGTGCA-GTCGGTCTG-GGATGCCATTGCAGTGGGAATTTT------CTGTATA----AGAATCTGCACAT-----------------------------ATGCATGTGCACATGTGTACATCAGT------------------------CT-GTACATCACT---------T-------G-------------CGAAA-----------AAG---TGGCAGAGT--------------GCAT-CAATTGCAGTAGCTACA--GA------------AATTAATCCAG-----------ATTCTTGCAGTGAGA---TCAGCA---TTTATT----GAACAA---TGGACGCCCCAGCCGAAGGAAACGTCG
droYak3 2R:19779178-19779430 - TCAGTTGTAAGCGTAAATAT------------GTAGCTCCCTTGTAGCAAGTGCA-CCCAGTCTG-GGATGGCAACGCAGTGGGAATTTT------CTGTATA----AGAATCTGCACAT-----------------------------ATGCATGTGCACATGTGTACATCAGT------------------------CT-GTACATCACT---------T-------G-------------CGAAA-----------AAG---TTGCAGAGT--------------GCAAC-ATTTCCAGTAGCAACCGA-A-------ACCGAAACTAATCGAG-----------AATCTTGCAGTGAGA---TCAGCA---TTTATT----GAACAA---TGGACGCCCCAGCCGAAGGAAACGTTG
droEug1 scf7180000409464:174830-175033 - TTAGATGTTGAAATAAATAT------------GTAGTCAAAGTTTCGCATGT-------AATCTG-GGATTCCTTTACAGTAGCAAATTT------CTGTATA----AGAATCT-------------------------------------------GCACATGTGTACATCATT------------------------CT-GTACATCATT---------A-------G-------------CAAAAACGA--------------A------------------------------------------------------------ACAATAAGAG---TT---TTAAATCTTTCAGTGAAA---TCAGCATAATATATT----GAACAA---TGGAGGCTCCACAAGAAGGAAACGTAG
droBia1 scf7180000302143:326669-326904 - TTAGCAGCTCGAACGAATAT------------GAAGCTCGGGCTTTGCATGTGCG-CTCGGTCTG-GGATTCCTGCACAGTTGCAATTTT------CTGTATA----AGAATCTGCACCT-----------------------ATG--------------CATGTGTACATCAGT------------------------CT-GTACATCACT---------T-------G-------------CGAATGTGT------------------------------------ACATCAAAGGC-----GCAACGGA-A------------AACTAAGAGAG---TC---TCTAATCTTGCAGTGAATCTTTCGGCA---TTTATT----GAACAA---TGGGCGATCCAGCTGAAGGAAACGTGG
droTak1 scf7180000415878:921418-921667 - TTAGCTGCTC-AATAAATAT------------GTAGCTCGGGTT-TGCATGTGCC-TTCAGTCTG-GGATTCCTTCACAGTTGCAATTTT------CTGTATA----AGAATCTGCACAT-------------------------CC--ATGCATGTGCACATGTGTACATCAGT------------------------CT-GTACATCACT---------G-------G-------------CGAATATGTACATCAAAAG---TAGTTGTAT--------------GCAGA--------------------A------------CATTAAGAGAC---TC--TTTTAATCTTGCAGTGAAA---TCGGCA---TTTATT----GAACAATGGTGGACCCTCCAGCAGAAGGCAATGTAG
droEle1 scf7180000491214:5283858-5284127 + TTAGCTGCACTAATAAATAT------------GTAGTTCAAGTTTTGCATGTGCA-TTCAGTCTGGGGATTCCTTCACAGTTGCAATTTT------CTGTATGTCTATGAACCTGAATTTATGTAG---------GTACACATGTATGTACATATATGCACATGGGTACATAAGT------------------------CT-GTACATCATT---------T-------G-------------CAAAGGCGA--------------GACAA--T--------------AAAAAAA-A-A-----AAAACAAA-G------------AACTAAGCGAG---TC---CTTAATCTTTCAGTGAAA---TCAGCA---TTTATT----GAAGAA---TGGACGCTCCACCAGAGGGAAACGTTG
droRho1 scf7180000777217:29063-29314 + TTAGTTGCACAAATAAATAT------------GTAGTTCAAGTTTTGCATGTGCA-TTCAGTCTG-GGATTCCGTCACAGTTGCAATTTT------CTGTATGTCTATGAATTTAAATG----TA-----------------TGTACAAATGTATTTGCACATGTGTACATCAGT------------------------CT-GTACATTATT---------T-------G-------------CAAAGGCGA--------------A------T--------------CCAAAAA---A-----GCAAGAAA-T------------AACTAAGGGAG---TC---CTTAATCTTTCAGTGAAA---TTAGCA---TTTATT----GAAGAA---TGGACGCTCCACCAGAGGGAAACGTTG
droFic1 scf7180000453858:1539308-1539552 - TTAGCCACACAAATAAACAT------------GTAGTTCAAGTTTTGCATAGGCA-TTCAGTCTG-GGATTCCTTCACAGTTGTAATTTT------CTGTATGCCTGTC-ATATGCA-A-----------------------TGTATGTATGCATGTACACATGTGTTCATCAGT------------------------CT---ACATCAAT---------T-------G-------------CAAAA-CGA-------AATTAAATTTTTTAC--------------TC-------------------A--AA------------AACTAAGAAAA----C---TTTAATCTTTCAGTGAAA---TCAGCA---TTTATT----AAAGAA---TGGACGCTCCGCCAGAGGGAAACGTTG
droKik1 scf7180000302355:380739-380994 - TTAGTTGTATAAATAAGTATGTATGTGTGCATGTAATTCGGTTTTTGCACGGCCC-TTGGGTATG-AGACTCCTTTACTGATGCAATTCC------CCGAATA----CTTATGT-----------------------------------ATGTACATACATATGCGAGTGCAAGC------------------------CT-GTACATCATCGAAAATTTTT-------G-------------CAGAAATGC------------------------------------GCCCTAAATTG-----GCATTT-----------------GCTTAACGTGAATTT--CTGTTGCATTCCAGTGAAA---TCCGCA---TTTACC----GTATAA---TGGACGCTCCGCCAGAGGGAAACGTGG
droAna3 scaffold_13266:5665757-5666009 - TAAAGGGCATACATGCATAT------------GTAATTCAATTTTT-AATATGCA-ATCGACCCG-ACATTCCTTCAAACTTGCAAATTT------TCTCACA----CACATACAT---------------------------------ATGTATGCACACGC--------CGA-TGCATCCTTTGTGTCCTTCGATGTCT-GTACATCGTC-----------------G-------------CAAAC-------------G---TTTAATATT--------------CTTGGAA-TTT-----AAAA-----A------------AAGTAATAACA--TTTTTTTTTTTTTTTTTTTTGAAA---CT-CTA---GTAACT----T-AAAA---TGGACGCTCCACCAGAGGGAACTGTTG
droBip1 scf7180000396372:280487-280797 - TAAAGGGCATACATGCATATCT----ATGTATGTAATTCAAATTTT-AATATTCG-ATCGACCCG-AGATTCCTATGCATTTGCAAATTT------TCGCACAT--ATGTACATAATGGTATGTACATACATACAA------TGTAC--ATACATATGTACATGTCCACGCTGG-TACATCCTTTGTGTCCTTCAATGGCT-GTACATCGTT---------T-------GTTTTACTTTTAATTGAAA-----------ACA---TTTCATTCT--------------CTTAAAA-TTA-----AAAA------------------TACAAATACAT---TTTTTTATTTAACTTCAGTAAGA---ACTGCA---ATAACT----T-AAAA---TGGACGCTCCACCAGAGGGAACCGTTG
dp5 3:1741356-1741403 - -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAT---TCCGCA---TTTATT----A-AAAA---TGGACGCTCCACCAGAGGGACACGTAG
droPer2 scaffold_2:1929183-1929458 - ATATATGTTGGTGTAAAACT------------GTATG----TTTTGATGTGTGCA-TTCAACTTT-AGATTCCTTCAC--TCAGAATTTCATCAGTTTAGATGCCCATGG----GGACGT----ACATA-------------CATGCAGATGTATGTA--TGTATGTATGTTGG-TGAAGGGCGTGTATGCTTCGGC--AT-TTGAAATAAG---------T-------G-------------TTAAA-----------TAA---GATGGTGAT--------------GCAAATGG--------TGAGAA--GATGTTAAATAAA--C--AA-------------TTTGGTTTGTTCAAGAAT---TCCGCA---TTTATT----A-AAAA---TGGACGCTCCACCAGAGGGACACGTAG
droWil2 scf2_1100000004514:1191104-1191309 + TGTATAACATATGTACA-----------------------------------------------------------------------------------------------------------------------------TATACATATATGTATGTATGTATGTACATCTGT------------------------GTAGTACATAATA---------CCAGAATGG-------------CGTATTACTTTATTAAATG---TAGTTCTACCCCACCCATGTGCTTAGGAAA-A----------------TTATTGAATGAA--A--AAACATG-----------TATTTTCAGGAATCA---ACTGCA---TTTACTGAATAGAAAA---TGGACGCTTCAACAGAAGGAAGTCTTG
droVir3 scaffold_12875:11964793-11964833 - ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA---TTTATT----C-AGAA---TGGATGCTCCACAGGAAGGAAATGTCG
droMoj3 scaffold_6496:14954721-14954758 - TTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----C-AGAA---TGGATGCGCCACAGGAAGGACATGTAG
droGri2 scaffold_15245:11758300-11758341 - ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA---TTTAAT----TCAGAA---TGGATGCTCCCAAAGAAGGAAATATCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCAGCTGCTCTAGTAAATAT------------GCGGCTCCCTCTTACCAAGTAAATCCCAGTCTG-GGATGGCAGCGCAGTGGCAATTTT------CTGTATA----AGAATGTGCACA-----------------------TATGCATATGCATGTGCACATGTGTACATCAGT------------------------CT-GTACATCACT---------T-------G-------------CGAAA-----------AAG---TGGCAGGGT--------------GCAAACAATTG-----GCAACA--GA------------CACTAATCGAG-----------AATCTTGCAGTGAGA---TCAGCA---TTTATT----GAACAA---TGGACGCCCCAGCCGAAGGACACGTTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................TATT----GAACAA---TGGACGCCCCAGC..............23119.0019000000105130000000
......................................................................................................................................................................................................................................................................................................................................................................TGAGA---TCAGCA---TTTATT----GAACAA---TGGA.......................27118.001800020047230000000
.......................................................................................................................................................................................................................................................................................................................................................................................TTTATT----GAACAA---TGGACGCCCCAGC..............25111.001100000047000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TT----GAACAA---TGGACGCCCCAGCCGAAGGA.......28110.001000010044100000000
............................................................................................................................................................................................................................................................................................................................................................................................T----GAACAA---TGGACGCCCCAGCCGAAGGA.......27110.001000010035010000000
.........................................................................................................................................................................................................................................................................................................................................................................................TATT----GAACAA---TGGACGCCCCAGCCGAA..........2718.00800000003200030000
..........................................................................................................................................................................................................................................................................................................................................................................................................TGGACGCCCCAGCCGAAGGACACGTT.2618.00800000000000071000
.........................................................................................................................................................................................................................................................................................................................................................................................TATT----GAACAA---TGGACGCCCCAGCCGA...........2617.00700010003210000000
..........................................................................................................................................................................................................................................................................................................................................................................................ATT----GAACAA---TGGACGCCCCAGCCGAAGGA.......2915.00500000005000000000
........................................................................................................................................................................................................................................................................................................................................................................................TTATT----GAACAA---TGGACGCCCCAGCCGAA..........2814.00400000002110000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TGGACGCCCCAGCCGAAGGACACGT..2513.00300000000000030000
............................................................................................................................................................................................................................................................................................................................................................................................T----GAACAA---TGGACGCCCCAGCCGAAGGAC......2813.00300000010000020000
.......................................................................................................................................................................................................................................................................................................................................................................................TTTATT----GAACAA---TGGACGCCCCAG...............2413.00300000030000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TT----GAACAA---TGGACGCCCCAGCCGAAGGAC......2913.00300100020000000000
......................................................................................................................................................................................................................................................................................................................................................................TGAGA---TCAGCA---TTTATT----GAACAA---TGG........................2613.00300000001011000000
........................................................................................................................................................................................................................................................................................................................................................................................TTATT----GAACAA---TGGACGCCCCAGC..............2413.00300000002000010000
.........................................................................................................................................................................................................................................................................................................................................................................................TATT----GAACAA---TGGACGCCCCAGCCGAAGG........2913.00300000021000000000
................................................................................................................................................................................................................................................................................................................GCAACA--GA------------CACTAATCGAG-----------AATCTT...................................................................2512.00200000000002000000
.........................................................................................................................................................................................................................................................................................................................................................................................TATT----GAACAA---TGGACGCCCCAGCCG............2512.00200000001010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TGGACGCCCCAGCCGAAGGACACG...2412.00200001001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TTTATT----GAACAA---TGGACGCCCCAGCCGA...........2812.00200000001010000000
........................................................................................................................................................................................................................................................................................................................................................................................TTATT----GAACAA---TGGACGCCCCAGCCGA...........2712.00200000000200000000
..............................................................................................................................................................................................................................................................................................................................................................................TCAGCA---TTTATT----GAACAA---TGGACGCC...................2612.00200100000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................TGGACGCCCCAGCCGAAGGAC......2112.00200000000000002000
....................................................................................................................................................................................................................................................................................................................................................................................................CAA---TGGACGCCCCAGCCGAAG.........2112.00200010000000001000
.........................................................................................................................................................................................................................................................................................................................................................................GA---TCAGCA---TTTATT----GAACAA---TGGACGCCC..................2912.00202000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TTTATT----GAACAA---TGGACGCC...................2012.00211000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................ATT----GAACAA---TGGACGCCCCA................2012.00200200000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TTTATT----GAACAA---TGGACGCCC..................2112.00201100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................A---TGGACGCCCCAGCCGAAGGA.......2112.00200000000000002000
.......................................................................................................................................................................................................................................................................................................................................................................................TTTATT----GAACAA---TGGACGCCCCAGCC.............2612.00202000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................T----GAACAA---TGGACGCCCCAGCCGAAGGACA.....2912.00200000001000010000
.................................................................................................................................................................................................................................................................................................................CAACA--GA------------CACTAATCGAG-----------A........................................................................1911.00100000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TATT----GAACAA---TGGACGCCC..................1911.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................AA---TGGACGCCCCAGCCGAAGGACACAA..2711.00100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................TTATT----GAACAA---TGGACGCC...................1911.00110000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................A---TGGACGCCCCAGCCGAAGG........2011.00100100000000000000
.......CTCTAGTAAATAT------------GCGGCT...............................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
................................................................................................................................................................................................................................................................................................................................................................................AGCA---TTTATT----GAACAA---TGGACGCCCC.................2611.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................GTGAGA---TCAGCA---TTTATT----GAACAA---TGGA.......................2811.00100000000100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CGCCCCAGCCGAAGGAC......1711.00100000000100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TGGACGCCCCAGCCGAAGGACA.....2211.00100000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................T----GAACAA---TGGACGCCCCAGCCG............2211.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TATT----GAACAA---TGGACGCCCCAGCCGAAG.........2811.00100000001000000000
......................................................................................................................................................................................................................................................................................................................................................................................................A---TGGACGCCCCAGCCGAAGGACACGTT.2711.00100000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................TCAGCA---TTTATT----GAACAA---TGGACGCCC..................2711.00100000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................................TATT----GAACAA---TGGACGCCCCAGCCGAAGGA.......3011.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AACAA---TGGACGCCCCAGCCGAAG.........2311.00100010000000000000
..............................................................................................................................................................................................................................................................................................................................................................................TCAGCA---TTTATT----GAACAA---TGGACGCCCC.................2811.00100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TGGACGCCCCAGCCGAAG.........1811.00100000000000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................GCCCCAGCCGAAGGACA.....1711.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................GCA---TTTATT----GAACAA---TGGACGCCCCAGC..............2811.00100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................ATT----GAACAA---TGGACGCCCCAGC..............2211.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................GAGA---TCAGCA---TTTATT----GAACAA---TGGAC......................2711.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................TCAGCA---TTTATT----GAACAA---TGGACGCCCCA................2911.00100000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................CA---TTTATT----GAACAA---TGGACGCCCCAGCCG............2911.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................T----GAACAA---TGGACGCCCCAGCCGAAGG........2611.00100000000010000000
...........................................................................................................................................................................................................................................................................................................................................................................................TT----GAACAA---TGGACGCCCCAGCCGA...........2411.00100000000010000000
......................................................................................................................................................................................................................................................................................................................................................................................................A---TGGACGCCCCAGCCGAAGGAC......2211.00100001000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TTTATT----GAACAA---TGGACGCCCC.................2211.00100010000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TT----GAACAA---TGGACGCCCCAGCCGAAGGACA.....3011.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TT----GAACAA---TGGACGCCCCAGCCGAAGG........2711.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................A---TTTATT----GAACAA---TGGACGCCCCAGCCGAA..........3011.00100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................ATT----GAACAA---TGGACGCCC..................1811.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................AA---TGGACGCCCCAGCCGAAGGAC......2311.00100000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................ATT----GAACAA---TGGACGCCCCAGCCGA...........2511.00100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................CAGCA---TTTATT----GAACAA---TGGACGCC...................2511.00100100000000000000
..........................................................................................................................................................TGTGCACATGTGTACATCAGT------------------------CT-GTA........................................................................................................................................................................................................................2611.00100000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................CAA---TGGACGCCCCAGCCGAAGGA.......2311.00100010000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................ACAA---TGGACGCCCCAGCCGAAGGACA.....2611.00100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................GA---TCAGCA---TTTATT----GAACAA---...........................2011.00100001000000000000
.......CTCTAGTAAATAT------------GCGGC................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................AA---TGGACGCCCCAGCCGAAGGACACGTT.2811.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TTATT----GAACAA---TGGACGCCCCAGCCGAAG.........2911.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................A---TTTATT----GAACAA---TGGACGCCCCAGCC.............2711.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AACAA---TGGACGCCCCAGCCG............2011.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................TTATT----GAACAA---TGGACGCCC..................2011.00101000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................T----GAACAA---TGGACGCCCCAGCCGAAGGACACGT..3211.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................ACGCCCCAGCCGAAGGA.......1711.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................CA---TTTATT----GAACAA---TGGACGC....................2111.00100000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................................TT----GAACAA---TGGACGCCC..................1711.00100000000100000000
..............................................................................................................................................................................................................................................................................................................................................................................TCAGCA---TTTATT----GAACAA---TGGACGC....................2511.00100000000010000000
...........................................................................................................................................................................................................................................................................................................................................................................................TT----GAACAA---TGGACGCCCC.................1811.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................CA---TTTATT----GAACAA---TGGACGCC...................2211.00110000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................CA---TTTATT----GAACAA---TGGACG.....................2011.00100000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................T----GAACAA---TGGACGCCCCAGCCGAAGGAA......2811.00100000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................ATT----GAACAA---TGGACG.....................1520.50100000001000000000
droSec2
TCAGCTGCTCGAGTAAATAT------------GCGGCTCCCTCTTACCAAGTAAATCCCAGTCTG-GGATGGCAGCGCAGTGGCAATTTT------CTGTATA----AGAATGTGCACATATGCAT---------GTGCACATATGCATATGCATGTGCACATGTGTACATCAGT------------------------CT-GTACATCACT---------T-------G-------------CGAAA-----------AAG---TTGCAGGAT--------------GCAAACAATTG-----GCAACA--GA------------CACTAATCGAG-----------AATCTTGCAGTGAGA---TCAGCA---TTTATT----GAACAA---TGGACGCCCCAGCCGAAGGACACGTTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................AA---TGGACGCCCCAGCCGAAGGA.......2212.0020020
.....................................................................................................................................................................................................................................................................................................................................................................................................AA---TGGACGCCCCAGCCGAAGGACACC...2611.0010010
..............................................................................................................................................................................................................................................................................................................................................................................TCAGCA---TTTATT----GAACAA---TGGACGCCCC.................2811.0011000
.............................................................................................................................................................................................................................................................................................................................................................................................................ACGCCCCAGCCGAAGGACA.....1911.0011000
............................................................................................................................................................................................................................................................................................................................................................................................................GACGCCCCAGCCGAAGGACACGTT.2411.0010100
..................................................................................................................................................................................................................................................................................................................AACA--GA------------CACTAATCGAG-----------A........................................................................1811.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................CAA---TGGACGCCCCAGCCGAAGG........2211.0011000
......................................................................................................................................................................................................................................................................................................................................................................................................A---TGGACGCCCCAGCCGAAG.........1911.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................TATT----GAACAA---TGGACGCC...................1811.0010010
......................................................................................................................................................................................................................................................................................................................................................................................................A---TGGACGCCCCAGCCGAAGGA.......2111.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................ATT----GAACAA---TGGACGCCCC.................1911.0010010
........................................................................................................................................................................................................................................................................................................................................CTAATCGAG-----------AATCTTGCAG...............................................................1911.0010010
.....................................................................................................................................................................................................................................................................................................................A--GA------------CACTAATCGAG-----------AATCTTGCAG...............................................................2411.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................................GCCCCAGCCGAAGGACACGTT.2111.0010010
dm3
TCAGCTGCTCGAGTAAATAT------------GCGGCTCCCTTTTCGCAAGTGCA-CCCAGTCTG-GGATGGCAGCGCAGTGGGAATTTT------CTGTATA----AGAATGTGCACA-----------------------TATGCATATGCATGTGCACATGTGTACATCAGT------------------------CT-GTACATCACT---------T-------G-------------CGAAA-----------ACG---TTTCGGGGT--------------GCAAACAATTG-----CCAACA--GA------------CACTAATCGAG-----------AATCTTGCAGTGAGA---TCAGCA---TTTATT----GAACAA---TGGACGCCCCAGCCGAAGGACACGTTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
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ML-DmD16-C3		V132
ML-DmD32		V133
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ML-DmD8		V135
CME-W2		V136
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Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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.............................................................TCTG-GGATGGCAGCGCAGTGGGAAT..............................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CGCCCCAGCCGAAGGACACGTT.2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................GTGAGA---TCAGCA---TTTATT----GAACA...............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................CCAACA--GA------------CACTAATCGAG-----------AATCTTGCAG...............................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................A--GA------------CACTAATCGAG-----------AATCTTG..................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................GAGA---TCAGCA---TTTATT----GAACAA---TG.........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GCTGCTCGAGTAAATAT------------G....................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AACAA---TGGACGCCCCAGCCGT...........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CAA---TGGACGCCCCAGCCGAAGG........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCGAAGGACACGTTG1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................GA---TCAGCA---TTTATT----GAACAA---TGGAC......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TATT----GAACAA---TGGACGCCCCA................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AGTAAATAT------------GCGGCTCCC............................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CGCCCCAGCCGAAGGACAC....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TATT----GAACAA---TGGACGCC...................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................TCTG-GGATGGCAGCGCAGT....................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................AGTGAGA---TCAGCA---TTTATT----GAACAA---TG.........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................TTCGGGGT--------------GCAAACAATTG-----CCAACA--GA------------...............................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TTTATT----GAACAA---TGGACG.....................1811.0010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................ACA--GA------------CACTAATCGAG-----------AATCT....................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................A---TCAGCA---TTTATT----GAACAA---TGGACGCC...................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................AA---TGGACGCCCCAGCCGAAGGACACG...2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................A------------CACTAATCGAG-----------AATCTTG..................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TGAGA---TCAGCA---TTTATT----GA..................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................TG-GGATGGCAGCGCAGTGGGA................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................ACAA---TGGACGCCCCAGCCGAAA.........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................GT------------------------CT-GTACATCACT---------T-------G-------------CGAAA-----------ACG---TTT.........................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TCAGTTGTTCGAGTAAATAT------------GTGGCTCACTTTTCGCATGTGCA-GTCGGTCTG-GGATGCCATTGCAGTGGGAATTTT------CTGTATA----AGAATCTGCACAT-----------------------------ATGCATGTGCACATGTGTACATCAGT------------------------CT-GTACATCACT---------T-------G-------------CGAAA-----------AAG---TGGCAGAGT--------------GCAT-CAATTGCAGTAGCTACA--GA------------AATTAATCCAG-----------ATTCTTGCAGTGAGA---TCAGCA---TTTATT----GAACAA---TGGACGCCCCAGCCGAAGGAAACGTCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................AA---TGGACGCCCCAGCCGAAGGA.......2212.0021001000
........................................................................................................................................................................CATCAGT------------------------CT-GTACATCACT---------........................................................................................................................................................................................................1911.0010010000
......................................................................................................................................................................................................................................................................................................................................................................................................A---TGGACGCCCCAGCCGAAGGA.......2111.0010001000
....................................................................................................................................................................................................................................................................................................................................................................................................CAA---TGGACGCCCCAGCCGA...........1911.0010001000
..............................................................................................................................................................................................................................................................................................................................................................................................................CGCCCCAGCCGAAGGAAACGT..2111.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................GACGCCCCAGCCGAAGGAAAC....2111.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................GCCCCAGCCGAAGGAAACGT..2011.0010000010
..........................................................................................................................................................................................................................................................................................................................................................................................ATT----GAACAA---TGGACGCCC..................1811.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................A---TGGACGCCCCAGCCGAAGGAAACGTC.2711.0010000010
droYak3
TCAGTTGTAAGCGTAAATAT------------GTAGCTCCCTTGTAGCAAGTGCA-CCCAGTCTG-GGATGGCAACGCAGTGGGAATTTT------CTGTATA----AGAATCTGCACAT-----------------------------ATGCATGTGCACATGTGTACATCAGT------------------------CT-GTACATCACT---------T-------G-------------CGAAA-----------AAG---TTGCAGAGT--------------GCAAC-ATTTCCAGTAGCAACCGA-A-------ACCGAAACTAATCGAG-----------AATCTTGCAGTGAGA---TCAGCA---TTTATT----GAACAA---TGGACGCCCCAGCCGAAGGAAACGTTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................ACAA---TGGACGCCCCAGCCGAAGGAAACGTT.30117.0017000000000017
.........................................................................................................................................................................................................................................................................................................................................................................................TATT----GAACAA---TGGACGCCCCAGCC.............2412.00202000000000
..............................................................................................................................................................................................................................................................................................................................................................................TCAGCA---TTTATT----GAACAA---TGGACGCC...................2611.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CAA---TGGACGCCCCAGCCGAA..........2011.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................AACAA---TGGACGCCCCAGCCGA...........2111.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................GTGAGA---TCAGCA---TTTATT----GAACA...............................2311.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................ACAA---TGGACGCCCCAGCCGAAGGAAACGTG.3011.00100000000001
...........................................................................................................................................................................................................................................................................................................................................................................................................GGACGCCCCAGCCGAAGGAAACGT..2411.00100000010000
....................................................................................................................................................................................................................................................................................................................................GAAACTAATCGAG-----------AATCTTGC.................................................................2111.00100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................GACGCCCCAGCCGAAGGAAAC....2111.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................GTGAGA---TCAGCA---TTTATT----GAAC................................2211.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AACAA---TGGACGCCCCAGC..............1811.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................TCAGCA---TTTATT----GAACAA---TGGACGCCCC.................2811.00100100000000
............................................................................................................................................................................................................................................................................................................................................................................................T----GAACAA---TGGACGCCCCAGCCGAAG.........2511.00100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................AA---TGGACGCCCCAGCCGAAGGAAACGTT.2811.00100000010000
.......................................................................................................................T-----------------------------ATGCATGTGCACATGTGT..............................................................................................................................................................................................................................................................1911.00100010000000
...........................................................................................................................................................................................................................................................................................................................................................................................TT----GAACAA---TGGACGCCCCAGCCGAA..........2511.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................ACAA---TGGACGCCCCAGCCGAAGG........2311.00101000000000
droEug1
TTAGATGTTGAAATAAATAT------------GTAGTCAAAGTTTCGCATGT-------AATCTG-GGATTCCTTTACAGTAGCAAATTT------CTGTATA----AGAATCT-------------------------------------------GCACATGTGTACATCATT------------------------CT-GTACATCATT---------A-------G-------------CAAAAACGA--------------A------------------------------------------------------------ACAATAAGAG---TT---TTAAATCTTTCAGTGAAA---TCAGCATAATATATT----GAACAA---TGGAGGCTCCACAAGAAGGAAACGTAGSizeHit CountTotal NormTotal
No Reads
droBia1
TTAGCAGCTCGAACGAATAT------------GAAGCTCGGGCTTTGCATGTGCG-CTCGGTCTG-GGATTCCTGCACAGTTGCAATTTT------CTGTATA----AGAATCTGCACCT-----------------------ATG--------------CATGTGTACATCAGT------------------------CT-GTACATCACT---------T-------G-------------CGAATGTGT------------------------------------ACATCAAAGGC-----GCAACGGA-A------------AACTAAGAGAG---TC---TCTAATCTTGCAGTGAATCTTTCGGCA---TTTATT----GAACAA---TGGGCGATCCAGCTGAAGGAAACGTGGSizeHit CountTotal NormTotal
No Reads
droTak1
TTAGCTGCTC-AATAAATAT------------GTAGCTCGGGTT-TGCATGTGCC-TTCAGTCTG-GGATTCCTTCACAGTTGCAATTTT------CTGTATA----AGAATCTGCACAT-------------------------CC--ATGCATGTGCACATGTGTACATCAGT------------------------CT-GTACATCACT---------G-------G-------------CGAATATGTACATCAAAAG---TAGTTGTAT--------------GCAGA--------------------A------------CATTAAGAGAC---TC--TTTTAATCTTGCAGTGAAA---TCGGCA---TTTATT----GAACAATGGTGGACCCTCCAGCAGAAGGCAATGTAGSizeHit CountTotal NormTotal
No Reads
droEle1
TTAGCTGCACTAATAAATAT------------GTAGTTCAAGTTTTGCATGTGCA-TTCAGTCTGGGGATTCCTTCACAGTTGCAATTTT------CTGTATGTCTATGAACCTGAATTTATGTAG---------GTACACATGTATGTACATATATGCACATGGGTACATAAGT------------------------CT-GTACATCATT---------T-------G-------------CAAAGGCGA--------------GACAA--T--------------AAAAAAA-A-A-----AAAACAAA-G------------AACTAAGCGAG---TC---CTTAATCTTTCAGTGAAA---TCAGCA---TTTATT----GAAGAA---TGGACGCTCCACCAGAGGGAAACGTTGSizeHit CountTotal NormTotal
No Reads
droRho1
TTAGTTGCACAAATAAATAT------------GTAGTTCAAGTTTTGCATGTGCA-TTCAGTCTG-GGATTCCGTCACAGTTGCAATTTT------CTGTATGTCTATGAATTTAAATG----TA-----------------TGTACAAATGTATTTGCACATGTGTACATCAGT------------------------CT-GTACATTATT---------T-------G-------------CAAAGGCGA--------------A------T--------------CCAAAAA---A-----GCAAGAAA-T------------AACTAAGGGAG---TC---CTTAATCTTTCAGTGAAA---TTAGCA---TTTATT----GAAGAA---TGGACGCTCCACCAGAGGGAAACGTTGSizeHit CountTotal NormTotal
No Reads
droFic1
TTAGCCACACAAATAAACAT------------GTAGTTCAAGTTTTGCATAGGCA-TTCAGTCTG-GGATTCCTTCACAGTTGTAATTTT------CTGTATGCCTGTC-ATATGCA-A-----------------------TGTATGTATGCATGTACACATGTGTTCATCAGT------------------------CT---ACATCAAT---------T-------G-------------CAAAA-CGA-------AATTAAATTTTTTAC--------------TC-------------------A--AA------------AACTAAGAAAA----C---TTTAATCTTTCAGTGAAA---TCAGCA---TTTATT----AAAGAA---TGGACGCTCCGCCAGAGGGAAACGTTGSizeHit CountTotal NormTotal
No Reads
droKik1
TTAGTTGTATAAATAAGTATGTATGTGTGCATGTAATTCGGTTTTTGCACGGCCC-TTGGGTATG-AGACTCCTTTACTGATGCAATTCC------CCGAATA----CTTATGT-----------------------------------ATGTACATACATATGCGAGTGCAAGC------------------------CT-GTACATCATCGAAAATTTTT-------G-------------CAGAAATGC------------------------------------GCCCTAAATTG-----GCATTT-----------------GCTTAACGTGAATTT--CTGTTGCATTCCAGTGAAA---TCCGCA---TTTACC----GTATAA---TGGACGCTCCGCCAGAGGGAAACGTGGSizeHit CountTotal NormTotal
No Reads
droAna3
TAAAGGGCATACATGCATAT------------GTAATTCAATTTTT-AATATGCA-ATCGACCCG-ACATTCCTTCAAACTTGCAAATTT------TCTCACA----CACATACAT---------------------------------ATGTATGCACACGC--------CGA-TGCATCCTTTGTGTCCTTCGATGTCT-GTACATCGTC-----------------G-------------CAAAC-------------G---TTTAATATT--------------CTTGGAA-TTT-----AAAA-----A------------AAGTAATAACA--TTTTTTTTTTTTTTTTTTTTGAAA---CT-CTA---GTAACT----T-AAAA---TGGACGCTCCACCAGAGGGAACTGTTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................TAACT----T-AAAA---TGGACGCTCCACCAGAG..........2712.002200000
....................................................................................................................................................................................................................................................................................................................................................................................................AAA---TGGACGCTCCACCAGAGGG........2211.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................AACT----T-AAAA---TGGACGCTCCACCAGAGG.........2711.001100000
............................................................................................................................................................................................................................................................................................................................................................................................T----T-AAAA---TGGACGCTCCACCA.............2011.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................AA---TGGACGCTCCACCAGAGGGAACT....2511.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................AACT----T-AAAA---TGGACGCTCCACCAGAGGG........2811.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................GACGCTCCACCAGAGGGAACTGTTG2511.001100000
............................................................................................................................................................................................................................................................................................................................................................................................T----T-AAAA---TGGACGCTCCACCAGAGGGAA......2711.001010000
............................................................................................................................................................................................................................................................................................................................................................................................T----T-AAAA---TGGACGCTCCACCAGAGGGA.......2611.001000010
.................................................................................................................................................................................................................................................................................................................................................................................................................TCCACCAGAGGGAACTGTTG2011.001000010
.....................................................................................................................................................................................................GTCT-GTACATCGTC-----------------G-------------CAAAC-------------G---TTTA........................................................................................................................................................2511.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................AAA---TGGACGCTCCACCAGAGGGAACTGT..2811.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................AA---TGGACGCTCCACCAGAGGGAACTG...2611.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................AAAA---TGGACGCTCCACCAGAGGGAACT....2711.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................TCCACCAGAGGGAACTGTT.1911.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................TGGACGCTCCACCAGAGGGAAC.....2211.001000010
...................................................................................................................................................................................................................................................................................................................................................................................................AAAA---TGGACGCTCCACCAGAGGGA.......2411.001000010
droBip1
TAAAGGGCATACATGCATATCT----ATGTATGTAATTCAAATTTT-AATATTCG-ATCGACCCG-AGATTCCTATGCATTTGCAAATTT------TCGCACAT--ATGTACATAATGGTATGTACATACATACAA------TGTAC--ATACATATGTACATGTCCACGCTGG-TACATCCTTTGTGTCCTTCAATGGCT-GTACATCGTT---------T-------GTTTTACTTTTAATTGAAA-----------ACA---TTTCATTCT--------------CTTAAAA-TTA-----AAAA------------------TACAAATACAT---TTTTTTATTTAACTTCAGTAAGA---ACTGCA---ATAACT----T-AAAA---TGGACGCTCCACCAGAGGGAACCGTTGSizeHit CountTotal NormTotal
No Reads
dp5
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAT---TCCGCA---TTTATT----A-AAAA---TGGACGCTCCACCAGAGGGACACGTAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................TT----A-AAAA---TGGACGCTCCACCAGAGGGA.......2712.0020200000000
.................................................................................................................................................................................................................................................................................................................................................................................................A-AAAA---TGGACGCTCCACCAGAGGG........2411.0010000100000
.................................................................................................................................................................................................................................................................................................................................................................................................A-AAAA---TGGACGCTCCACC..............1811.0010000100000
........................................................................................................................................................................................................................................................................................................................................................................................TTATT----A-AAAA---TGGACGCTC..................1911.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................ATT----A-AAAA---TGGACGCTCCACCAGAGG.........2611.0010000000001
.....................................................................................................................................................................................................................................................................................................................................................................................................AA---TGGACGCTCCACCAGAGGGACAC....2511.0010000000001
............................................................................................................................................................................................................................................................................................................................................................................................T----A-AAAA---TGGACGCTCCACCAGAGGGA.......2611.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................ATT----A-AAAA---TGGACGCTCCACCAGAGGGA.......2811.0010010000000
........................................................................................................................................................................................................................................................................................................................................................................................TTATT----A-AAAA---TGGACGCTCC.................2011.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................TATT----A-AAAA---TGGACGCTCCACCAG............2411.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................AT---TCCGCA---TTTATT----A-AAAA---TGGA.......................2311.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................TCCGCA---TTTATT----A-AAAA---TGGACGCTC..................2611.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................A---TGGACGCTCCACCAGAGGG........2011.0010000100000
.................................................................................................................................................................................................................................................................................................................................................................................................A-AAAA---TGGACGCTCCACCAGAGGGA.......2511.0010010000000
droPer2
ATATATGTTGGTGTAAAACT------------GTATG----TTTTGATGTGTGCA-TTCAACTTT-AGATTCCTTCAC--TCAGAATTTCATCAGTTTAGATGCCCATGG----GGACGT----ACATA-------------CATGCAGATGTATGTA--TGTATGTATGTTGG-TGAAGGGCGTGTATGCTTCGGC--AT-TTGAAATAAG---------T-------G-------------TTAAA-----------TAA---GATGGTGAT--------------GCAAATGG--------TGAGAA--GATGTTAAATAAA--C--AA-------------TTTGGTTTGTTCAAGAAT---TCCGCA---TTTATT----A-AAAA---TGGACGCTCCACCAGAGGGACACGTAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................ATT----A-AAAA---TGGACGCTCCACCAGAG..........2515.005500000
.........................................................................................................................................................................................................................................................................................................................................................................................TATT----A-AAAA---TGGACGCTCCACC..............2213.003300000
......................................................................................................................................................................................................................................................................................................................................................................................................A---TGGACGCTCCACCAGAGGGA.......2112.002200000
........................................................................................................................................................................................................................................................................................................................................................................................TTATT----A-AAAA---TGGACGCT...................1812.002200000
......................................................................................................................................................................................................................................................................................................................................................................................................A---TGGACGCTCCACCAGAGG.........1911.001100000
............................................................................................................................................................................................................................................................................................................................................................................................T----A-AAAA---TGGACGCTCCACCAGAGG.........2411.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................AAAA---TGGACGCTCCACCAGAGGGG.......2411.001100000
............................................................................................................................................................................................................................................................................................................................................................................................T----A-AAAA---TGGACGCTCCACCAGAGGG........2511.001100000
........................................................................................................................................................................................................................................................................................................................................................................................TTATT----A-AAAA---TGGACGCC...................1811.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................TATT----A-AAAA---TGGACGCTCCACCAGAG..........2611.001001000
.....................................................................................................................................................................................................................................................................................................................................................................................................AA---TGGACGCTCCACCAGAGGGA.......2211.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................A---TGGACGCTCCACCAGAGGG........2011.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................TATT----A-AAAA---TGGACGCTCCACCAGAGGG........2811.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................A-AAAA---TGGACGCTCCACCAGAGGGG.......2511.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................TATT----A-AAAA---TGGACGCTCCACCAGAGGGA.......2911.001100000
............GTAAAACT------------GTATG----TTTTGATGTGT.................................................................................................................................................................................................................................................................................................................................................................................2411.001001000
..........................................................................................................................................................................................................................................................................................................................................................................................ATT----A-AAAA---TGGACGCTCCACCAGAGG.........2611.001100000
.........................................................................................................................................................................................................................................................................................................................................................................AT---TCCGCA---TTTATT----A-AAAA---TGGACG.....................2511.001100000
........................................................................................................................................................................................................................................................................................................................................................................................TTATT----A-AAAA---TGGACGCTCCACC..............2311.001100000
droWil2
TGTATAACATATGTACA-----------------------------------------------------------------------------------------------------------------------------TATACATATATGTATGTATGTATGTACATCTGT------------------------GTAGTACATAATA---------CCAGAATGG-------------CGTATTACTTTATTAAATG---TAGTTCTACCCCACCCATGTGCTTAGGAAA-A----------------TTATTGAATGAA--A--AAACATG-----------TATTTTCAGGAATCA---ACTGCA---TTTACTGAATAGAAAA---TGGACGCTTCAACAGAAGGAAGTCTTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................AA---TGGACGCTTCAACAGAAGGAAGT....2516.00610050
.....................................................................................................................................................................................................................................................................................................................................................................................................AA---TGGACGCTTCAACAGA...........1814.00400040
........................................................................................................................................................................................................................................................................................................................................................................................TTACTGAATAGAAAA---TGGACGC....................2212.00200002
.....................................................................................................................................................................................................................................................................................................................................................................................................AA---TGGACGCTTCAACAGAAGGA.......2212.00200020
..............................................................................................................................................................................................................................................................................................................................................................................................AATAGAAAA---TGGACGCTTCAACA.............2312.00220000
...............................................................................................................................................................................................................................................................................................................................................................................................ATAGAAAA---TGGACGCTTCAACAGA...........2412.00201010
......................................................................................................................................................................................................................................................................................................................................................................AATCA---ACTGCA---TTTACTGAATAGAA................................2512.00200020
...............................................................................................................................................................................................................................................................................................................................................................................................ATAGAAAA---TGGACGCTTCAACAG............2312.00220000
.....................................................................................................................................................................................................................................................................................................................................................................................................AA---TGGACGCTTCAACAGAAGGAAG.....2412.00200020
..................................................................................................................................................................................................................................................................................................................................................................................................GAAAA---TGGACGCTTCAACAGAAGGA.......2511.00100010
.......................................................................................................................................................................................................................................................................................................................................................................ATCA---ACTGCA---TTTACTGAATAGAA................................2411.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................AA---TGGACGCTTCAACAGAAGGAA......2311.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................ACTGAATAGAAAA---TGGACGCTT..................2211.00101000
...................................................................................................................................................................................................................................................................................................................................................................................A---TTTACTGAATAGAAAA---TGGA.......................2111.00101000
..........................................................................................................................................................................................................................................................................................................................................................................................ACTGAATAGAAAA---TGGAC......................1811.00110000
.............................................................................................................................................................................................................................................................................................................................................................................................GAATAGAAAA---TGGACGCT...................1811.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................CGCTTCAACAGAAGGAAGTC...2011.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................GAAAA---TGGACGCTTCAACAGAAGGAA......2611.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGAAGGAAGTCTTG1811.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................A---TGGACGCTTCAACAGAAGGA.......2111.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................AGAAAA---TGGACGCTTCAACAGAAGGA.......2611.00101000
...................................................................................................................................................................................................................................................................................................................................................................................................AAAA---TGGACGCTTCAACAGA...........2011.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................TACTGAATAGAAAA---TGGAC......................1911.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................AA---TGGACGCTTCAACAGAAG.........2011.00100010
...............................................................................................................................................................................................................................................................................................................................................................................CTGCA---TTTACTGAATAGAA................................1911.00100010
........................................................................................................................................................................................................................................................................................................................................................................................TTACTGAATAGAAAA---TGGAC......................2011.00100010
.........................................................................................................................................................................................................................................................................................................................................................................CA---ACTGCA---TTTACTGAATAGAAA...............................2311.00110000
.......................................................................................................................................................................................................................................................................................................................................................................................TTTACTGAATAGAAAA---TGGACGC....................2311.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................ATAGAAAA---TGGACGCTTCAACA.............2211.00100010
....................................................................................................................................................................................................................................................................................................................................................................GGAATCA---ACTGCA---TTTACTGAATAGA.................................2611.00101000
.........................................................................................................................................................................................................................................................................................................................................................................CA---ACTGCA---TTTACTGAATAGAAAA---...........................2411.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................GGACGCTTCAACAGAAGGAAGT....2211.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................GAATAGAAAA---TGGACGCTTC.................2011.00100100
........................................................................................................................................................................................................................................................................................................................................................................TCA---ACTGCA---TTTACTGAATAGAAA...............................2411.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................AAA---TGGACGCTTCAACAGA...........1911.00100010
.........................................................................................................................................................................................................................................................................................................................................................................CA---ACTGCA---TTTACTGAATAGAA................................2211.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................GACGCTTCAACAGAAGGAAGT....2111.00100010
...................................................................................................................................................................................................................................................................................................................................................................AGGAATCA---ACTGCA---TTTACTGAATAGAAA...............................2911.00110000
....................................................................................................................................................................................................................................................................................................................................................................................................AAA---TGGACGCTTCAACAGAAGG........2211.00110000
.........................................................................................................................................................................................................................................................................................................................................................................CA---ACTGCA---TTTACTGAATAG..................................2011.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................TGGACGCTTCAACAGAAGG........1911.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................AAA---TGGACGCTTCAACAGAAGGAAGT....2611.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................TACTGAATAGAAAA---TGGACGCTTCAA...............2611.00100010
.......................................................................................................................................................ATGTATGTATGTATGTAC............................................................................................................................................................................................................................................................18200.10200020
droVir3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA---TTTATT----C-AGAA---TGGATGCTCCACAGGAAGGAAATGTCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................A---TGGATGCTCCACAGGAAGGA.......2114.004000003000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................A---TGGATGCTCCACAGGAAGG........2013.003000000000000010000000000000000000000000000000000000000000002000
.........................................................................................................................................................................................................................................................................................................................................................................................TATT----C-AGAA---TGGATGCTCCAC...............2112.002000000000000000000000000000000000200000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................A---TTTATT----C-AGAA---TGGATGCT...................2012.002000000000000000000000010000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................................................................................................................................CCACAGGAAGGAAATGTC.1812.002000000000000011000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................AA---TGGATGCTCCACAGGA...........1811.001000000000000010000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCCACAGGAAGGAAA.....1911.001000000010000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TGGATGCTCCACAGGAAGGAAATGTCG2711.001000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TATT----C-AGAA---TGGATGCTCCA................2011.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................................................................................................CTCCACAGGAAGGAAATGTC.2011.001000000010000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TGGATGCTCCACAGGAAGGAAATGT..2511.001000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TTATT----C-AGAA---TGGATGCTCC.................2011.001000000000000000100000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................T----C-AGAA---TGGATGCTCCACAGGAAG.........2411.001000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TTATT----C-AGAA---TGGATGCT...................1811.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TATT----C-AGAA---TGGATGCTCC.................1911.001000000000000000000000000000000000001000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................A---TGGATGCTCCACAGGAAG.........1911.001000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................GAA---TGGATGCTCCACAGGA...........1911.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................T----C-AGAA---TGGATGCTCCACAGG............2111.001000000000000000000000000000000000001000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................AA---TGGATGCTCCACAGGAAG.........2011.001000000000000000000000000000000001000000000000000000000000000000
droMoj3
TTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----C-AGAA---TGGATGCGCCACAGGAAGGACATGTAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................A---TGGATGCGCCACAGGAAGGA.......2111.001000001
..TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----C-AGAA---TGGATGCGCCACAGGAA..........2611.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................TGGATGCGCCACAGGAAGGA.......2011.001000001
.TTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----C-AGAA---TGGATGCGCCA................2111.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................AGAA---TGGATGCGCCACAGGAAGGACA.....2611.001000100
.....................................................................................................................................................................................................................................................................................................................................................................................................AA---TGGATGCGCCACAGGAAGGACA.....2411.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................GAA---TGGATGCGCCACAGGAAGGA.......2311.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................GAA---TGGATGCGCCACAGGAAG.........2111.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................A---TGGATGCGCCACAGGAAGG........2011.001000001
.TTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----C-AGAA---TGGATGCGCC.................2011.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................AGAA---TGGATGCGCCACAGGAAG.........2211.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................AGAA---TGGATGCGCCACAGG............1911.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................GGATGCGCCACAGGAAGGACAT....2211.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................ATGCGCCACAGGAAGGACATG...2111.001001000
......................................................................................................................................................................................................................................................................................................................................................................................................A---TGGATGCGCCACAGGAAGGAC......2211.001100000
droGri2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA---TTTAAT----TCAGAA---TGGATGCTCCCAAAGAAGGAAATATCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 07:41 PM