ID:

dsi_409

 Coordinate:

2r:3139587-3139736 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [2r_3139342_3139586_+]; CDS [2r_3139342_3139586_+]; intron [2r_3139587_3140463_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TTGCCAAAACCGCCCCTGAGCTAGCTGCCAACAGAGCCAACGACATTCAGGTACTCTTCCCAATAATTAATTTAACTTTAGCTTACATTCACGTGTGGTACCGTCGCTTACAAAGTTACCACTCTCAGTTCTTAGAACATTTTATTTAAATCTGATTATTTTCCGAATATAGAAAACGTTTCGTTATAGATTAATAAGGACCATGTATAGTTTTTTGTTAACAAATAGCACAGCCAAAAATTATGTTGAA
**************************************************.......(((.....(((((((((....................((((((.....((((...)))))))))).....((((...)))).((((((.....((.((......)).))..))))))((((...)))).)))))))))..)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
...................................................................................................................................................................................TTCGTTATAGATTAATAAGGACC................................................ 23 0 1 1.00 1 1 0
..............................................................................................................................................................................................TTAACAAGGACCATG............................................. 15 1 9 0.11 1 0 1

Anti-sense strand reads

AACGGTTTTGGCGGGGACTCGATCGACGGTTGTCTCGGTTGCTGTAAGTCCATGAGAAGGGTTATTAATTAAATTGAAATCGAATGTAAGTGCACACCATGGCAGCGAATGTTTCAATGGTGAGAGTCAAGAATCTTGTAAAATAAATTTAGACTAATAAAAGGCTTATATCTTTTGCAAAGCAATATCTAATTATTCCTGGTACATATCAAAAAACAATTGTTTATCGTGTCGGTTTTTAATACAACTT
**************************************************.......(((.....(((((((((....................((((((.....((((...)))))))))).....((((...)))).((((((.....((.((......)).))..))))))((((...)))).)))))))))..)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 M053
female body
 SRR902009
testis
.......................CGACGGTTGTCTCGGTTGCTGTAAGT......................................................................................................................................................................................................... 26 0 1 28.00 28 5 4 9 1 3 6 0 0
.....................................................................................................................TGGTGACAGTCAAGAATCTTGTAAAAT.......................................................................................................... 27 1 1 16.00 16 4 3 2 7 0 0 0 0
....................................................................................................................................................................................AGCAATATCTAATTATTCCTGGTACAT........................................... 27 0 1 16.00 16 6 6 4 0 0 0 0 0
...........................................................................................................................................AAAATAAATTTAGACTAATAAAAGGCTT................................................................................... 28 0 1 12.00 12 5 0 2 5 0 0 0 0
..............................................................................................................GTTTCAATGGTGACAGTCAAGAATCTTGT............................................................................................................... 29 1 1 10.00 10 2 5 2 1 0 0 0 0
...................................CGGTTGCTGTAAGTCCATGAGAAGGGT............................................................................................................................................................................................ 27 0 1 10.00 10 2 3 4 0 0 1 0 0
......................................................................................................................GGTGACAGTCAAGAATCTTGTAAAAT.......................................................................................................... 26 1 1 10.00 10 4 1 2 3 0 0 0 0
.....................................................................................................................................................................................................................AAACAATTGTTTATCGTGTCGGTTT............ 25 0 1 9.00 9 4 3 1 1 0 0 0 0
..................................................................................................................................................................................................................AAAAAACAATTGTTTATCGTGTCGGTTT............ 28 0 1 6.00 6 3 3 0 0 0 0 0 0
....................................................................................................................................................................................AGCAATATCTAATTATTCCTGGTACATAT......................................... 29 0 1 6.00 6 0 2 4 0 0 0 0 0
..............................................................................................................GTTTCAATGGTGACAGTCAAGAAT.................................................................................................................... 24 1 1 6.00 6 1 0 1 4 0 0 0 0
.................................................................................................................................................................................................................CAAAAAACAATTGTTTATCGTGTCGGTT............. 28 0 1 6.00 6 5 0 1 0 0 0 0 0
............................................................................................................ATGTTTCAATGGTGACAGTCAAGAAT.................................................................................................................... 26 1 1 6.00 6 1 0 1 4 0 0 0 0
.....................................................................................................................................................................................................................AAACAATTGTTTATCGTGTCGGTTTT........... 26 0 1 6.00 6 3 0 1 2 0 0 0 0
.........................................................AGGGTTATTAATTAAATTGAAATCGAAT..................................................................................................................................................................... 28 0 1 5.00 5 3 0 1 1 0 0 0 0
....................................................................................................................................................................................................................AAAACAATTGTTTATCGTGTCGGTTTT........... 27 0 1 5.00 5 5 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CAAAAAACAATTGTTTATCGTGTCGGT.............. 27 0 1 5.00 5 2 0 0 3 0 0 0 0
...............................................................................................................................................................................................................ATCAAAAAACAATTGTTTATCGTGTCGGTT............. 30 0 1 5.00 5 1 4 0 0 0 0 0 0
...................................................................................................................................................................................................................AAAAACAATTGTTTATCGTGTCGGTTTT........... 28 0 1 5.00 5 2 1 0 2 0 0 0 0
.................................................................................................................................................................................................................CAAAAAACAATTGTTTATCGTGTCGGTTT............ 29 0 1 5.00 5 3 2 0 0 0 0 0 0
................................................................................................................................................................................................................TCAAAAAACAATTGTTTATCGTGTCGGT.............. 28 0 1 4.00 4 1 1 2 0 0 0 0 0
.....................ATCGACGGTTGTCTCGGTTGCTGT............................................................................................................................................................................................................. 24 0 1 4.00 4 0 0 0 1 2 1 0 0
...........................................................................................................................................AAAATAAATTTAGACTAATAAAAGGCAT................................................................................... 28 1 1 4.00 4 2 1 0 1 0 0 0 0
................................................................................................................TTCAATGGTGACAGTCAAGAATCTTGT............................................................................................................... 27 1 1 4.00 4 2 0 0 2 0 0 0 0
....................................................................................................................................................................................................................AAAACAATTGTTTATCGTGTCGGTTT............ 26 0 1 4.00 4 4 0 0 0 0 0 0 0
........................GACGGTTGTCTCGGTTGCTGTAAGT......................................................................................................................................................................................................... 25 0 1 4.00 4 1 0 0 0 0 3 0 0
...................................................................................................TGGCAGCGAATGTTTCAATGGTGACAGT........................................................................................................................... 28 1 1 4.00 4 1 0 2 1 0 0 0 0
..............................................................................................................GTTTCAATGGTGACAGTCAAGAATCTT................................................................................................................. 27 1 1 4.00 4 0 1 1 2 0 0 0 0
.....................................................................................ATAAGTGCACACCAAGGCAGCGAATGT.......................................................................................................................................... 27 2 1 3.00 3 0 2 0 0 0 1 0 0
.................................................................................................................TCAATGGTGACAGTCAAGAATCTTGT............................................................................................................... 26 1 1 3.00 3 0 3 0 0 0 0 0 0
.........................................................................................................................GACAGTCAAGAATCTTGTAAAAT.......................................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0 0
....................................................................................................GGCAGCGAATGTTTCAATGGTGAAAGT........................................................................................................................... 27 1 1 3.00 3 0 0 0 0 0 3 0 0
.........................................................AGGGTTATTAATTAAATTGAAATCGA....................................................................................................................................................................... 26 0 1 3.00 3 0 1 1 0 1 0 0 0
....................................................................................................................................................TTAGACTAATAAAAGGCTTATATCT............................................................................. 25 0 1 3.00 3 1 0 0 2 0 0 0 0
................................................................................................CTATGGCAGCGAATGTTTCAATGGTGA............................................................................................................................... 27 1 1 3.00 3 1 0 0 2 0 0 0 0
.......................................TGCTGTAAGTCCATGAGAAGGGTTATT........................................................................................................................................................................................ 27 0 1 3.00 3 1 1 0 0 0 0 1 0
...............................................................................................................TTTCAATGGTGACAGTCAAGAATCTTGT............................................................................................................... 28 1 1 3.00 3 2 0 0 1 0 0 0 0
....................................................................................................................ATGGTGACAGTCAAGAATCTTGTAAAAT.......................................................................................................... 28 1 1 3.00 3 3 0 0 0 0 0 0 0
....................................................................................................GGCAGCGAATGTTTCAATGGTGACA............................................................................................................................. 25 1 1 3.00 3 1 0 2 0 0 0 0 0
.....................................................................................................................TGGTGAGAGTCAAGAATCTTGTAAAAT.......................................................................................................... 27 0 1 3.00 3 0 0 0 0 3 0 0 0
......................................................................................................CAGCGAATGTTTCAATGGTGACAGT........................................................................................................................... 25 1 1 3.00 3 1 0 2 0 0 0 0 0
...................................................................................................................................................................................................................AAAAACAATTGTTTATCGTGTCGGTT............. 26 0 1 3.00 3 0 2 1 0 0 0 0 0
.............................................................................................ACACCAAGGCAGCGAATGTTTCAAT.................................................................................................................................... 25 1 1 2.00 2 0 0 0 0 0 2 0 0
....................................GGTTGCTGTAAGTCCATGAGAAGGGT............................................................................................................................................................................................ 26 0 1 2.00 2 0 0 0 1 0 1 0 0
................................................................................................................................................AAATTTAGACTAATAAAAGGCATTTAT............................................................................... 27 2 1 2.00 2 0 1 0 1 0 0 0 0
.....................................................................................................................TGGTGACAGTCAAGAATCTTGTA.............................................................................................................. 23 1 1 2.00 2 1 0 1 0 0 0 0 0
................................................................................................................................................AAATTTAGACTAATAAAAGGCTTATAT............................................................................... 27 0 1 2.00 2 0 2 0 0 0 0 0 0
..............................................................................................................................................................AAAAGGCTTATATCTTTTGCAAAGCAAT................................................................ 28 0 1 2.00 2 1 0 0 0 1 0 0 0
........................................................................................AGTGCACACCATGGCAGCGAATGTT......................................................................................................................................... 25 0 1 2.00 2 0 0 0 0 2 0 0 0
..............GGACTCGATCGACGGTTGTCTCGGT................................................................................................................................................................................................................... 25 0 1 2.00 2 1 0 0 0 0 1 0 0
....................................................................................................GGCAGCGAATGTTTCAATGGTGACAGT........................................................................................................................... 27 1 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................TAATTAAATTGAAATCGAATGTAAGTGCAC........................................................................................................................................................... 30 0 1 2.00 2 2 0 0 0 0 0 0 0
.....................................................................................................................TGGTGAAAGTCAAAAATCCTGTAAAAT.......................................................................................................... 27 3 1 2.00 2 0 2 0 0 0 0 0 0
................................................................................................................TTCAATGGTGACAGTCAAGAATCTT................................................................................................................. 25 1 1 2.00 2 1 0 1 0 0 0 0 0
.......................................................................................AAGTGCACACCAAGGCAGCGAATGT.......................................................................................................................................... 25 1 1 2.00 2 1 1 0 0 0 0 0 0
....................................................................................................................................................TTAGACTAATAAAAGGCTTATATCTT............................................................................ 26 0 1 2.00 2 2 0 0 0 0 0 0 0
...............................................................................................................................................................AAAGGCTTATATCTTTTGCAAAGCAATAT.............................................................. 29 0 1 2.00 2 1 0 0 1 0 0 0 0
.......................CGACGGTTGTCTCGGTTGCTGTAAGTCCAT..................................................................................................................................................................................................... 30 0 1 2.00 2 0 2 0 0 0 0 0 0
...............GACTCGATCGACGGTTGTCTCGGT................................................................................................................................................................................................................... 24 0 1 2.00 2 0 0 0 1 0 1 0 0
..................................TCGGTTGCTGTAAGTCCATGAGAAGGG............................................................................................................................................................................................. 27 0 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................................TGAAATCGAATGTAAGTGCACACTAT...................................................................................................................................................... 26 1 1 2.00 2 1 1 0 0 0 0 0 0
....................................................................................................GGCAGCGAATGTTTCAATGGTGACAGTC.......................................................................................................................... 28 1 1 2.00 2 0 0 2 0 0 0 0 0
............................................................................................................ATGTTTCAATGGTGACAGTCAAGAATCT.................................................................................................................. 28 1 1 2.00 2 0 1 1 0 0 0 0 0
........................GACGGTTGTCTCGGTTGCTGTAAGTC........................................................................................................................................................................................................ 26 0 1 2.00 2 0 0 0 0 1 1 0 0
.....................................................................................................................TGGTGACAGTCAAGAATCTTGTAA............................................................................................................. 24 1 1 2.00 2 2 0 0 0 0 0 0 0
..................................ACGGTTGCTGTAAGTCCATGAGAAGG.............................................................................................................................................................................................. 26 1 1 2.00 2 0 0 0 0 0 2 0 0
...................................................................................................................................................................................................................AAAAACAATTGTTTATCGTGTCGGTTT............ 27 0 1 2.00 2 1 0 0 1 0 0 0 0
.....................................................................................GTAAGTGCACACCATGGCAGCGAAT............................................................................................................................................ 25 0 1 2.00 2 0 0 0 0 2 0 0 0
....................................................................................................................................................................................AGCAATATCTAATTATTCCTGGTACAGAT......................................... 29 1 1 2.00 2 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................AAAAAACAATTGTTTATCGTGTCGGTT............. 27 0 1 2.00 2 0 0 2 0 0 0 0 0
...........................GGTTGTCTCGGTTGCTGTAAGTCC....................................................................................................................................................................................................... 24 0 1 2.00 2 0 2 0 0 0 0 0 0
...............................................................................................................................................................................................................ATCAAAAAACAATTGTTTATCGTGTCGGT.............. 29 0 1 2.00 2 2 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AACAATTGTTTATCGTGTCGGTTT............ 24 0 1 2.00 2 2 0 0 0 0 0 0 0
..................................................................................................................CAATGGTGAGAGTCAAGAATCTTGT............................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0
.......................................................................................................................................................................ATATCTTTTGCAAAGCAATATCTAATT........................................................ 27 0 1 1.00 1 0 0 0 1 0 0 0 0
.....................................................................................................................................................TAGACTAATAAAAGGCATTTACCT............................................................................. 24 3 1 1.00 1 0 0 0 0 0 1 0 0
....................................................................................................................................................................................AGCAATATCTAATTATTCCT.................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0
...................................................................................................................................................TTTAGACTAATAAAAGGCTTAT................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................CGACGGTTGTCTCGGTTGCTGTAAGTCCA...................................................................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................................ATATAAGTGCACACCAAGGCAGCGA.............................................................................................................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................CTTTTGCAAAGCAATATCTAATTATT..................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0
.....................................................................TAAATTGAAATCGAATG.................................................................................................................................................................... 17 0 1 1.00 1 0 0 0 0 1 0 0 0
.....................................................................................................................TGGTGAGAGTCAAGAATCTTGTA.............................................................................................................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0
.....................GTCGACGGTTGTCTCGGTTGCTGTAA........................................................................................................................................................................................................... 26 1 1 1.00 1 0 0 0 0 1 0 0 0
..............................................................................................................................................................................TTGCAAAGCAATATCTAATTATTCCTGGT............................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CCTGGTACATATCAAAAAACAATTGTTT......................... 28 0 1 1.00 1 0 0 0 0 0 0 1 0
............................................................................................CACACTATGGCAGCGAATGTTTCAATGGT................................................................................................................................. 29 1 1 1.00 1 0 0 0 1 0 0 0 0
...........................................................................................GCACACCAAGGCAGCGAATGTT......................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 1 0 0
..................................................................................................ATGGCAGCGAATGTTTCAATGGTGACAGT........................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATTGTTTATCGTGTCGGTTTTTAAT....... 25 0 1 1.00 1 0 0 0 1 0 0 0 0
...................................................ATGAGAAGGGTTATTAATTAAATTGAAAT.......................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................AAATAAATTTAGACTAATAAAAGG...................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TTATCGTGTCGGTTTTTAATACAAC.. 25 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................ATATAAGTGCACACCAAGGCAGCGAATGT.......................................................................................................................................... 29 2 1 1.00 1 0 0 0 0 0 0 0 1
.........GGCGGGGACTCGATCGACGGTTGTCT....................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................TTATCGTGTCGGTTTATAATACAACT. 26 1 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................................................ATGGCAGCGAATGTTTCAATGGTGAC.............................................................................................................................. 26 1 1 1.00 1 0 0 1 0 0 0 0 0
..................................................................................................................................................................................AAAGCAATATCTAATTATTCCTGGTACAT........................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0
........................................................................................AGTGCACACTATGGCAGCGAATGTT......................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................AAATAAATTTAGACTAATAAAAGGCTT................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................TGTTTCAATGGTGACAGTCAAGAATCTTGT............................................................................................................... 30 1 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................AGCAATATCTAATTATT..................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................AAATTTAGACTAATAAAAGGCATTT................................................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACAATTGTTTATCGTGTCGGTT............. 22 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TATCGTGTCGGTTTTTAAT....... 19 0 1 1.00 1 0 0 0 0 1 0 0 0
........................................................................................AGTGCACACTATGGCAGCGAATGTTT........................................................................................................................................ 26 1 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................................GTGCACACCAAGGCAGCGAATGT.......................................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................CTATGGCAGCGAATGTTTCAATGGT................................................................................................................................. 25 1 1 1.00 1 0 0 0 1 0 0 0 0
.......TTGGCGGGGACTCGATCGACGG............................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0
..................................TCGGTTGCTGTAAGT......................................................................................................................................................................................................... 15 0 1 1.00 1 0 0 0 0 1 0 0 0
................................................................................................................................................AAATTTAGACTAATAAAAGGCATT.................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0 0
.......................CGACGGTTGTCTCGGTTGCTGTAAGG......................................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................GTTTCAATGGTGAGAGTCAAGAATCT.................................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0
................................TCTCGGTTTCTGTAAGTCCATGAGA................................................................................................................................................................................................. 25 1 1 1.00 1 0 0 0 0 1 0 0 0
....................................................................TTAAATTGAAATCGAATGTAAGTGCAC........................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................TGGTGAGAGTCAAGAAT.................................................................................................................... 17 0 1 1.00 1 0 0 0 0 1 0 0 0
........................................................................................AGTGCACACTATGGCAGCGAATGTTTCAA..................................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................TCAATGGTGACAGTCAAGAATCTTGTAAAAT.......................................................................................................... 31 1 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................CACCAAGGCAGCGAATGTTTCAATGGT................................................................................................................................. 27 1 1 1.00 1 0 0 0 0 0 1 0 0
..............................................................................................CACTATGGCAGCGAATGTTTCAATGGT................................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................AAATAAATTTAGACTAATAAAAGGCAT................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................TAAAATAAATTTAGACTAATAAAAGGCTT................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................................................AGAATCTTGTAAAATAAATTTAGACTAAT............................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................AATCGAATGTAAGTGCACACTATGGCAG................................................................................................................................................. 28 1 1 1.00 1 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................CAAAAAACAATTGTTTATCGTGTCGGGTT............ 29 1 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................TTTCAATGGTGAGAGTCAAGAAT.................................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0
...................................CGGTTTCTGTAAGTCCATGAGAAGGGTT........................................................................................................................................................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0
..........................CGGTTGTCTCGGTTGCTGTAAGT......................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................GTGCACACTATGGCAGCGAATGTTT........................................................................................................................................ 25 1 1 1.00 1 0 0 0 1 0 0 0 0
..............GGACTCGATCGACGGTTGTCTC...................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0
..................................................................................................ATGGCAGCGAATGTTTCAATGGTGACA............................................................................................................................. 27 1 1 1.00 1 0 0 1 0 0 0 0 0
..............................................................................................CACCAAGGCAGCGAATGTTTCAA..................................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 1 0 0
...............................................................................................ACCATGGCAGCGAATGTT......................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0
.......................CGACGGTTGTCTCGGTTGTTGTAAGT......................................................................................................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................................................................................................AAAAAGGCTTATATCTTTTGCAAAGCAAT................................................................ 29 1 1 1.00 1 0 0 1 0 0 0 0 0
...............................................................................................ACCAAGGCAGCGAATGTTTCAATGGTGA............................................................................................................................... 28 1 1 1.00 1 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................GGTACATATCAAAAAACAATTGTTTA........................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................AGGCTTATATCTTTTGCAAAGCAATAT.............................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0
.................................AACGGTTGCTGTAAGTCCATGAGA................................................................................................................................................................................................. 24 2 1 1.00 1 0 0 0 0 0 1 0 0
...................CGATCGACGGTTGTCTCGGTTGCTGT............................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0
.............................................................................................................................................AATAAATTTAGACTAATAAAAGGCTTAT................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................CCATGAGAAGGGTTATTAATTAAAT................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................ATCTTTTGCAAAGCAATATCTAATTATT..................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................TGACGGTTGTCTCGGTTGCTGTAAGT......................................................................................................................................................................................................... 26 1 1 1.00 1 0 0 0 0 0 1 0 0
...GGTTTTGGCGGGGACTCGATCGA................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................ATCAAAAAACAATTGTTTATCGTGTCGGTTT............ 31 0 1 1.00 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................ACAATTGTTTATCGTGTCGGTTTAT.......... 25 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................TCGGTTGCTGTAAGTCCATGAGAAGGGT............................................................................................................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................................................ATAAATTTAGACTAATAAAAGGCATC.................................................................................. 26 2 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................TGAAATCGAATGTAAGTGCACACTATGG.................................................................................................................................................... 28 1 1 1.00 1 0 0 0 1 0 0 0 0
............................................................................................CACACCAAGGCAGCGAATGTTTCAAT.................................................................................................................................... 26 1 1 1.00 1 0 0 0 0 0 1 0 0
.............................................TTGTCCATGAGAAGGGTTATTAAT..................................................................................................................................................................................... 24 2 1 1.00 1 0 0 0 1 0 0 0 0
.....................................................................................................GCAGCGAATGTTTCAATGGTGAAAGT........................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................TTTTGCAAAGCAATATCTAATTATT..................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0
.......................CGACGGTTGTCTGGGTTGCTGTAAGTCCAT..................................................................................................................................................................................................... 30 1 1 1.00 1 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................AAAACAATTGTTTATCGTGTCGGTT............. 25 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................GTGCACACCAAGGCAGCGAATGTTT........................................................................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AACAATTGTTTATCGTGTCGGTTTT........... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................ATAAGTGCACACCAAGGCAGCGAAT............................................................................................................................................ 25 2 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................GTTTCAATGGTGAGAGTTAAGAAT.................................................................................................................... 24 1 1 1.00 1 0 0 0 0 1 0 0 0
..............................................................................................................................................ATAAATTTAGACTAATAAAAGGCATTTA................................................................................ 28 2 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................AAGTGCACACCATGGCAGCGAATGTT......................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................AAAAAACAATTGTTTATCGTGTCGGTTTT........... 29 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................TAAATTGAAATCGAATGTAAGTGCACAC......................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
.......TTGGCGGGGACTCGATCGACGGTTGTCT....................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................CGAATGTTTCAATGGTGACAGTCAAGAAT.................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................GTGCACACTATGGCAGCGAATGTTTCAA..................................................................................................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0
....................................................................................................................ATGGTGACAGTCAAGAATCTTGTAA............................................................................................................. 25 1 1 1.00 1 0 0 0 1 0 0 0 0
...................................CGGTTGCTGTAAGTCCATGAGAAGGGTT........................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................ATATCTAATTATTCCTGGTACAGAT......................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................GGTGAGAGTCAAGAATCTTGTAA............................................................................................................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0
.......................CGACGGTTGTCTCGGTTGCTGTAAGTC........................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0
...............................................................................................................................................TAAATTTAGACTAATAAAAGGCTT................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0
....................................................................................................GGCAGCGAATGTTTCAATGGTGACAGTCA......................................................................................................................... 29 1 1 1.00 1 0 0 1 0 0 0 0 0
............................................................................................CACACCAAGGCAGCGAATGTTTCAA..................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 1
.............................................................................................ACACCAAGGCAGCGAATGTTTCAA..................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 1 0 0
.ACGGTTTTGGCGGGGACTCGAT................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0
..........................................................................................................AAATGTTTCAATGGTGACAGTCAAGAAT.................................................................................................................... 28 2 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................TGGTGAGAGTCAAGAATCTTGTAA............................................................................................................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0
.......................................................................................................................................................................TTACCTTTTGCAAAGCAATATCTAATT........................................................ 27 2 1 1.00 1 0 0 0 0 0 1 0 0
...................................................................................................TGGCAGCGAATGTTTCAATGGTGA............................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................CATGAGAAGGGTTATTAATTAAA................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0
.........................................................................TTGAAATCGAATGTAAGTGCACACTAT...................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................TTTCAATGGTGAGAGTCAAGAATCTTGT............................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 1 0
......................................TTGCTGTAAGTCCATGAGAAGGGTTATT........................................................................................................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................CGAATGTTTCAATGGTGACAGTCAAGAA..................................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTGTTTATCGTGTCGGTTTTTAAT....... 24 0 1 1.00 1 0 0 1 0 0 0 0 0
..............................................................................................................GTTTCAATGGTGACAGTCAAGAATCT.................................................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0 0 0
.............GGGACTCGATCGACGGTTGTCTCGGT................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................TTTCAATGGTGACAGTCAAGAATCT.................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................AATAAGTGCACACCAAGGCAGCGAATGT.......................................................................................................................................... 28 3 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................TTTCAATGGTGAGAGTCAAGAATCTT................................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0
..............................................................................................................................................ATAAATTTAGACTAATAAAAGGCATT.................................................................................. 26 2 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................................................................................................CTAATAAAAGGCTTAT................................................................................. 16 0 1 1.00 1 0 0 0 0 1 0 0 0
...........................................................................................................................................AAAATAAATTTAGACTAATAAAAGGC..................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0
.............................................................................................ACACCAAGGCAGCGAATGTTTCAATGGT................................................................................................................................. 28 1 1 1.00 1 0 0 0 0 0 1 0 0
..........................CGGTTGTCTCGGTTGCTGTAAGTCCA...................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................ACACACCAAGGCAGCGAATGTTTCAA..................................................................................................................................... 26 2 1 1.00 1 0 0 0 0 0 1 0 0
................................................................................................CCATGGCAGCGAATGTT......................................................................................................................................... 17 0 1 1.00 1 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................AAACAATTGTTTATCGTGTCGGTTTTT.......... 27 0 1 1.00 1 0 0 0 1 0 0 0 0
....................................................................................TGTAAGTGCACACCATGGCAGCGAAT............................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0
.......................................TGCTGTAAGTCCATGAGAAGGGT............................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................TTAAATTGAAATCGAATGTAAGT............................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0
..........................CGGTTGTCTCGGTTGCTGTAAGTCCAT..................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................TAATTATTCCTGGTACATATCAAAA.................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0
..............................................................................................CACCAAGGCAGCGAATGTTTCAAT.................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 1 0 0
..................................................................................................ATGGCAGCGAATGTTTCAATGGTGA............................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................ATGTTTCAATGGTGAGAGTCAAGAAT.................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0
...............................................................................................................TTTCAATGGTGACAGTCAAGAAT.................................................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0
.............................................................................AATCGAATGTAAGTGCACACCATGG.................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0
...............................................................................................................................................................AAAGGCTTATATCTTTTGCAAAGCAA................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0
......................................................AGAAGGGTTATTAATTAAATTGAAAT.......................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................................................AAAATAAATTTAGACTAATAAAAGGCATT.................................................................................. 29 2 1 1.00 1 0 0 0 1 0 0 0 0
.............................................AAGTCCATGAGAAGGGTTATTAATT.................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0
............GGGGACTCGATCGACGGTTGTCTCGGT................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0
.......TTGGCGGGGACTCGATCGACGGTT........................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0
...................................................................................................TGGCAGCGAATGTTTCAATGGTGACA............................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0
.........................ACGGTTGTCTCGGTTGCTGTAAGTCCA...................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0
................................................................................................................................................AAATTTAGACTAATAAAAGGCATTTA................................................................................ 26 2 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................GGTACAGATCAAAAAACAATTGTTTA........................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................ATAAGTGCACACCAAGGCAGCGAA............................................................................................................................................. 24 2 1 1.00 1 0 0 0 0 0 1 0 0
...............................................GTCCATGAGAAGGGTTATTAATTAAAT................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 1 0 0 0
.........................................................................TTGAAATCGAATGTA.................................................................................................................................................................. 15 0 3 0.33 1 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................TTATCGTGTCGGTTTTC.......... 17 1 3 0.33 1 0 0 0 0 1 0 0 0
.................................CTTGGTTGCTGGAAGCCCA...................................................................................................................................................................................................... 19 3 20 0.30 6 0 1 5 0 0 0 0 0
.....................................GTTGCTGTAAGTCCAT..................................................................................................................................................................................................... 16 0 4 0.25 1 0 0 0 0 1 0 0 0
..................................................................................................................................................................................AAAGCAAGATCTAATTA....................................................... 17 1 4 0.25 1 0 0 1 0 0 0 0 0
......................................TTGCTGTAAGTCCAT..................................................................................................................................................................................................... 15 0 4 0.25 1 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................TCAATTGTTGATCGTGTCTGT.............. 21 3 5 0.20 1 1 0 0 0 0 0 0 0
.............GGGACTCGATCGTCG.............................................................................................................................................................................................................................. 15 1 6 0.17 1 0 0 0 1 0 0 0 0
.................................CTCCGTCGCTGTAAGTCCAC..................................................................................................................................................................................................... 20 3 11 0.09 1 0 0 1 0 0 0 0 0
......................................TAGCTGTCAGGCCATGAGA................................................................................................................................................................................................. 19 3 11 0.09 1 0 0 0 1 0 0 0 0
........TGGCTGGGAGTCGATC.................................................................................................................................................................................................................................. 16 2 14 0.07 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TCTTGCTTTTTAATACAACTT 21 3 15 0.07 1 0 0 0 0 1 0 0 0
........TGGCTGGGAGTCGATCCA................................................................................................................................................................................................................................ 18 3 17 0.06 1 0 0 1 0 0 0 0 0
............GGGGACTCGATCGTTG.............................................................................................................................................................................................................................. 16 2 18 0.06 1 0 0 0 1 0 0 0 0
...........AGGGGACTCGATCCCCGG............................................................................................................................................................................................................................. 18 3 20 0.05 1 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:3139537-3139786 + dsi_409 TTGCCAAAACCGCCCCTGAG--------------CTA-GCTGCCAACAGAGCCAACGACATTCAGGTACTCTTCCCAAT----AATTAATTTAACTTTAGCTTACATTCACGTGT------GGTACCGTCGCTTACAAAGTTACCACTCTCAGTTCTTAGAACAT--------------------------TTTATTTAAATC---TGATTATTTTCCGAATATAGAAA-ACGTTTCGTTATAGATTAATAAGGACCATGTATAGTT-TTTTGTTAACAAATAGCAC------AGC-----------------------------------------------CAAAAA----------TTATGTTGAA
droSec2 scaffold_26:786754-787003 + TTGCCAAAACCGCCCCTGAG--------------CTA-GCTGCCAACAGAGCCAACGACATTCAGGTACTCTTCCCAAT----AATTAATTTAACTTTAGTTTACACTTACGTGT------GGTACCGTCGCTTACAAAGTTACCACTTTCAGTTTTTAGGACAT--------------------------TTTATTTAAATC---TGATTATTTTCCGTAAATAGAAA-ACGTTTCGTTATAGATTTATAAGGACCATGTATAGTT-TTTTGTTAACAAATAGCAC------AGC-----------------------------------------------CAAATA----------TTATGTTGAA
dm3 chr2R:2141710-2141963 + TTGCCAAAACCGCCCCTGAT--------------CTA-GCTGCCAACAGAGCCAACGACATTCAGGTACTCTTCCCAATTAATATTTAATTGATCTTTAGTTTATATTTATGTGTTAAATTAATACAGTCACTTACTAAGTTACCACTCTCAGTTCTTATG-------------------------------TGTTTTGAATC---TGATTATTTTCCGTATATAGCAA-ACGTTTCATTACAGATA-ATTAGGACCCTATCTAGTT-TATAGTAAACAAATAGCAC------AGC-----------------------------------------------CAAATA----------TTATGTTGAA
droEre2 scaffold_4929:20183513-20183608 - TTGCCAAGACCGACCCAGAG--------------CTA-GCTGCCAACAGGGCCAACGACATTCAGGTAGTATTTTCAAA----TATGAATTCAAA------------TCGCGAGT------GGTAATAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCT
droYak3 2R:2474622-2474765 - TTGACTTT------------------------------------------------------------------------------------------AGACTAAAGT----TGC------GGCACG-------------------------------------CATCACTTACACAAGTTATTGTAAAAGTTTATCA-AATACAATATTCATTTTTGAGAAAT-AAAA-TTTTTTTATTA------------------------------------------------------CCACAGGCCTTAC----------TATAAACACATATTATT-----------ATA----------TTATATAAAA
droEug1 scf7180000409581:100910-100965 - TTGCCAAAACGGACCCCGAG--------------CTA-GCCTCCAATCGAGCCACAAACATTCAGGTACTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302291:263567-263685 + TTGCCAAAACTGATCCAGAG--------------CTA-GCCGCTAATCGAGCCAACGACATTCAGGTAGTGTTCCC------------------------------------------------------------------------------------------------------------------------------------------TTTTTGTTACGCAAA-ACAATACATTT------------------------------------------------------------------------------------------------ATTCGACTAAAGTTAACCCGTAGTATAGTTGC
droTak1 scf7180000415366:169027-169183 + AGTTCAACTTTAACTTTGATACTTGAAAGTAGTATTTAAATACTCACTAATTCTTGGAAAATTAGCTAAAAT------------------------------------------------CCT-----TACAGTCTAAATAGATT--------------------------------------------------------------------TTTTTGGATTTGTAAA-ATGTATCCTTATCAAAA------------------------------------------------TTAATGACA--------------TAAATTAAAA------------------AAC----------AAATTTTTAA
droEle1 scf7180000487496:623-675 + TTGCCAAAACGGAGCCTGAG--------------CTG-GCCGCCAACCGAGCCAACGAAATTCAGGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000780271:36435-36569 + ACATTGTTATCACTTCACTTTTTTGGATCTTCAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAATT---TTATTTATGCTTAAAAATTAAAT-TAGTTTGTTTAAAAACTAATAATAATTTTGTACA------------ACAAA--T------------------------TTCTGTTAGT-AC--------------------ATTAAAAA----------ATGTATTTTG
droFic1 scf7180000453955:930587-930639 - TCTCAAAAACGGAGCCCGAG--------------CTG-GCCGCCAACCGAGCCAACGAAATTCAGGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302398:515510-515615 - TGATTCCT------------------------------------------------------------------------------------------------------------------------TCACTTCGAAAAATATTATTTTGTATTATAAAATGAT--------------------------TTTATTAAAATC---TGATTTTT--------------------------------------------------------------------------------------------------------TATATTAAAAAACTTCTTGATTATTTTAAAA----------TTAACAAGAA
droAna3 scaffold_13230:194030-194087 + ATATTATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAATA---AGGCATTTGACCTAATAAAAAAA-ATGTACCGTTAAAAATTAATA----------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396691:1300004-1300106 - ATGATTTTCCGAGTTTTGAG--------------TTG-AAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCGTTTAAAAAAAAAAA----------------------AGGTCT--GTATCGTA-TTTTTAGAACGAA--T------------------------ACGCTCAGGT-TA--------------------CTTGAATC----------GAATAAATAA
dp5 XL_group3a:88287-88369 + TTATTACTCGTA--------------------------------------------------------------------------------------------------------------------------------------------TGCTTTAACACAT--------------------------TTTATTAGAATC---ATATTATTATTTTAATCTGTAAT-ATATATTATTT----------------------------------------------------------------------------------------------------------AA----------TAGCATTAAG
droPer2 scaffold_34:23284-23336 + TCTCCAAGACCGATCCAGAG--------------ATG-GCCGCCCATCGGGTCACAGAAATCCAGGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004909:3931039-3931099 - TCAGTTCT-----------------------------------------------------------------------------------------------------------------------------------------------------AAA------------------------------------AAAAATC---TGGTTAATTTTCGAAAACAAGAA-ACACTTCAATTCAAATTCA-----------------------------------------------------------------------------------------------------------------------T
droVir3 scaffold_12723:58878-58957 + AACGTTAC-------------------------------------------------------------TATTTCGATT-AATAT-TAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATGCTATTTTGGTGACGAGGGTTTTTATAAAAGC-----------------------------------------------CAAAAA----------TTTTGCTTAA
droMoj3 scaffold_6540:19219141-19219255 + TTATGATCTTTTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAATT---TATTTATTTTCCGTATACTTTACTTAGTTTTAGCATTAATTGATAA------CCTAAAGCT-TGTTAGTCAAAAATAATTCACCAG----------------------------------------------------AAATA----------AAAAATTATG
droGri2 scaffold_15245:81804-81855 - TGTCCAAAACTGAACCCGAA--------------ACG-GCCGCCAAGCGTGCCACAGAAATTCAGGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTGCCAAAACCGCCCCTGAG--------------CTA-GCTGCCAACAGAGCCAACGACATTCAGGTACTCTTCCCAAT----AATTAATTTAACTTTAGCTTACATTCACGTGT------GGTACCGTCGCTTACAAAGTTACCACTCTCAGTTCTTAGAACAT--------------------------TTTATTTAAATC---TGATTATTTTCCGAATATAGAAA-ACGTTTCGTTATAGATTAATAAGGACCATGTATAGTT-TTTTGTTAACAAATAGCAC------AGC-----------------------------------------------CAAAAA----------TTATGTTGAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................TTCGTTATAGATTAATAAGGACC................................................................................................................2311.00110000000000000000
droSec2
TTGCCAAAACCGCCCCTGAG--------------CTA-GCTGCCAACAGAGCCAACGACATTCAGGTACTCTTCCCAAT----AATTAATTTAACTTTAGTTTACACTTACGTGT------GGTACCGTCGCTTACAAAGTTACCACTTTCAGTTTTTAGGACAT--------------------------TTTATTTAAATC---TGATTATTTTCCGTAAATAGAAA-ACGTTTCGTTATAGATTTATAAGGACCATGTATAGTT-TTTTGTTAACAAATAGCAC------AGC-----------------------------------------------CAAATA----------TTATGTTGAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....AAAACCGCCCCTGAG--------------CTA-GC.........................................................................................................................................................................................................................................................................................................................................2011.0010010
.............................................ACAGAGCCAACGACATTCAG................................................................................................................................................................................................................................................................................................................2011.0010010
dm3
TTGCCAAAACCGCCCCTGAT--------------CTA-GCTGCCAACAGAGCCAACGACATTCAGGTACTCTTCCCAATTAATATTTAATTGATCTTTAGTTTATATTTATGTGTTAAATTAATACAGTCACTTACTAAGTTACCACTCTCAGTTCTTATG-------------------------------TGTTTTGAATC---TGATTATTTTCCGTATATAGCAA-ACGTTTCATTACAGATA-ATTAGGACCCTATCTAGTT-TATAGTAAACAAATAGCAC------AGC-----------------------------------------------CAAATA----------TTATGTTGAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............CCCTGAT--------------CTA-GCTGCCAACAGAGCCAA..........................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000001000000000100000000000000000001000000
...........................................CAACAGAGCCAACGACATTCAGGGT.............................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000
.............CCCTGAT--------------CTA-GCTGCCAACAGAGC.............................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CCCTGAT--------------CTA-GCTGCCAACAGAGCC............................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................AGAGCCAACGACATTCAGGGTT............................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TTTAATTGATCTTTAGTTTAT........................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................ATG-------------------------------TGTTTTGAATC---TGATTAT............................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TA-GCTGCCAACAGAGCCAACGACA.....................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...................T--------------CTA-GCTGCCAACAGAGCCAACG........................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000
................................................................................AATATTTAATTGATCTTTAGT............................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000010000000000000000000000000
............................................AACAGAGCCAACGACATTCAGGGT.............................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...............CTGAT--------------CTA-GCTGCCAACAGAGT.............................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................................................................................................ATGTGTTAAATTAATACAGT................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
..........CGCCCCTGAT--------------CTA-GCTGCCAACAGAGCCAA..........................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CTGAT--------------CTA-GCTGCCAACAGAGCCAA..........................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................A-GCTGCCAACAGAGCCAACGA.......................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................GTTTTGAATC---TGATTATTTTC........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............CCTGAT--------------CTA-GCTGCCAACAGAGCCAACGACA.....................................................................................................................................................................................................................................................................................................................3111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................CTTTAGTTTATATTTATGTGT..............................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................TTACCACTCTCAGTTCTTATG-------------------------------.................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................A-ACGTTTCATTACAGATA-ATTAGGACCC...............................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TGCCAACAGAGCCAACGACATTCAGGTAC............................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................ATATTTAATTGATCTTTAGTT...........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................AGTTACCACTCTCAGTTCTTA..................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AAAACCGCCCCTGAT--------------CTA-GCTGC......................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TTCTTATG-------------------------------TGTTTTGAATC---TGATTATT...........................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................T--------------CTA-GCTGCCAACAGAGCCAA..........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CTA-GCTGCCAACAGAGCCAACGACAT....................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.......................................CTGCCAACAGAGCCAACGA.......................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
............CCCCTGAT--------------CTA-GCTGCCAACAGAGC.............................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................TTCCGTATATAGCAA-ACGTTTC....................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................TTACAGATA-ATTAGGACCCTA.............................................................................................................2111.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............CCTGAT--------------CTA-GCTGCCAACAGAGCCA...........................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................TTGAATC---TGATTATTTTCCGT.....................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
........................................TGCCAACAGAGCCAACGAC......................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................TGAT--------------CTA-GCTGCCAACAGAG..............................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CCCTGAT--------------CTA-GCTGCCAACAGAGCCAAC.........................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................TGAATC---TGATTATTTTCCGTATATAGCA.............................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CTGCCAACAGAGCCAACGC.......................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................TG-------------------------------TGTTTTGAATC---TGATTATT...........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TT-TATAGTAAACAAATAGCAC------A...........................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.........CCGCCCCTGAT--------------CTA-GCTGCCA....................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
................TGAT--------------CTA-GCTGCCAACAGAGCC............................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................CAACGACATTCAGGTACTCTT........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................TATATAGCAA-ACGTTTCATTACAGA............................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...........................................CAACAGAGCCAACGACATTCA.................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.............................................ACAGAGCCAACGACATTCAGGGT.............................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......AACCGCCCCTGAT--------------CTA-GCTGC......................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTGCCAAGACCGACCCAGAG--------------CTA-GCTGCCAACAGGGCCAACGACATTCAGGTAGTATTTTCAAA----TATGAATTCAAA------------TCGCGAGT------GGTAATAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............CCCAGAG--------------CTA-GCTGCCAACAGG...............................................................................................................................................................................................................................................................................................................................2211.0010000100
...................................TA-GCTGCCAACAGGGCCAACGACATTC..................................................................................................................................................................................................................................................................................................................2711.0010100000
..........CGACCCAGAG--------------CTA-GCTGCCAAC..................................................................................................................................................................................................................................................................................................................................2211.0010000010
......AGACCGACCCAGAG--------------CTA-GC.........................................................................................................................................................................................................................................................................................................................................1911.0010010000
..............CCAGAG--------------CTA-GCTGCCAACAGGGC.............................................................................................................................................................................................................................................................................................................................2311.0010000010
............................................AACAGGGCCAACGACATTCAGGGT.............................................................................................................................................................................................................................................................................................................2411.0011000000
droYak3
TTGACTTT------------------------------------------------------------------------------------------AGACTAAAGT----TGC------GGCACG-------------------------------------CATCACTTACACAAGTTATTGTAAAAGTTTATCA-AATACAATATTCATTTTTGAGAAAT-AAAA-TTTTTTTATTA------------------------------------------------------CCACAGGCCTTAC----------TATAAACACATATTATT-----------ATA----------TTATATAAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
TTGCCAAAACGGACCCCGAG--------------CTA-GCCTCCAATCGAGCCACAAACATTCAGGTACTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TTGCCAAAACTGATCCAGAG--------------CTA-GCCGCTAATCGAGCCAACGACATTCAGGTAGTGTTCCC------------------------------------------------------------------------------------------------------------------------------------------TTTTTGTTACGCAAA-ACAATACATTT------------------------------------------------------------------------------------------------ATTCGACTAAAGTTAACCCGTAGTATAGTTGCSizeHit CountTotal NormTotal
No Reads
droTak1
AGTTCAACTTTAACTTTGATACTTGAAAGTAGTATTTAAATACTCACTAATTCTTGGAAAATTAGCTAAAAT------------------------------------------------CCT-----TACAGTCTAAATAGATT--------------------------------------------------------------------TTTTTGGATTTGTAAA-ATGTATCCTTATCAAAA------------------------------------------------TTAATGACA--------------TAAATTAAAA------------------AAC----------AAATTTTTAASizeHit CountTotal NormTotal
No Reads
droEle1
TTGCCAAAACGGAGCCTGAG--------------CTG-GCCGCCAACCGAGCCAACGAAATTCAGGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ACATTGTTATCACTTCACTTTTTTGGATCTTCAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAATT---TTATTTATGCTTAAAAATTAAAT-TAGTTTGTTTAAAAACTAATAATAATTTTGTACA------------ACAAA--T------------------------TTCTGTTAGT-AC--------------------ATTAAAAA----------ATGTATTTTGSizeHit CountTotal NormTotal
No Reads
droFic1
TCTCAAAAACGGAGCCCGAG--------------CTG-GCCGCCAACCGAGCCAACGAAATTCAGGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TGATTCCT------------------------------------------------------------------------------------------------------------------------TCACTTCGAAAAATATTATTTTGTATTATAAAATGAT--------------------------TTTATTAAAATC---TGATTTTT--------------------------------------------------------------------------------------------------------TATATTAAAAAACTTCTTGATTATTTTAAAA----------TTAACAAGAASizeHit CountTotal NormTotal
No Reads
droAna3
ATATTATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAATA---AGGCATTTGACCTAATAAAAAAA-ATGTACCGTTAAAAATTAATA----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
ATGATTTTCCGAGTTTTGAG--------------TTG-AAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCGTTTAAAAAAAAAAA----------------------AGGTCT--GTATCGTA-TTTTTAGAACGAA--T------------------------ACGCTCAGGT-TA--------------------CTTGAATC----------GAATAAATAASizeHit CountTotal NormTotal
No Reads
dp5
TTATTACTCGTA--------------------------------------------------------------------------------------------------------------------------------------------TGCTTTAACACAT--------------------------TTTATTAGAATC---ATATTATTATTTTAATCTGTAAT-ATATATTATTT----------------------------------------------------------------------------------------------------------AA----------TAGCATTAAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TCTCCAAGACCGATCCAGAG--------------ATG-GCCGCCCATCGGGTCACAGAAATCCAGGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TCAGTTCT-----------------------------------------------------------------------------------------------------------------------------------------------------AAA------------------------------------AAAAATC---TGGTTAATTTTCGAAAACAAGAA-ACACTTCAATTCAAATTCA-----------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
AACGTTAC-------------------------------------------------------------TATTTCGATT-AATAT-TAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATGCTATTTTGGTGACGAGGGTTTTTATAAAAGC-----------------------------------------------CAAAAA----------TTTTGCTTAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TTATGATCTTTTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAATT---TATTTATTTTCCGTATACTTTACTTAGTTTTAGCATTAATTGATAA------CCTAAAGCT-TGTTAGTCAAAAATAATTCACCAG----------------------------------------------------AAATA----------AAAAATTATGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TGTCCAAAACTGAACCCGAA--------------ACG-GCCGCCAAGCGTGCCACAGAAATTCAGGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............CCGAA--------------ACG-GCCGCCAAGCGTG..............................................................................................................................................................................................................................................................................................................................2111.00110

Generated: 05/19/2015 at 12:05 PM