dsi_4076

five_prime_UTR [2r_7979884_7979889_-]; CDS [2r_7979821_7979883_-]; exon [2r_7979821_7979889_-]; intron [2r_7979890_7981462_-]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GTTTGAAAAATGTTTTTAATCTTAAAACCCTATCAATTATCCAAATCTCGGGATTATCATTAAGTTAACTTTTAGCTATGTCCAGTAGATCATCCCTGCTGGCATTTGTGGCTTGTGCCACTTAATTCAATAATATTTATTTATAGATATTTAAACATTTCAGACGACACGTGTCTAATCTAACTATGATTTCCTTGCAGTTCAAAATGATGCAATATCTTGTTGTTAGCCTGGCACTTTGCGCCACAAT ************************************************(((..(((((..((((((...))))))(((.(((((((.......))))))))))..(((((....)))))..........((((((((....))))))))..........(((((.....))))).........))))).)))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M053 female body	M023 head	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
...........................................................................................................................................................................................................................TTGTTGTTAGCCTGGCACTTT..........	21	0	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................ATATCTTGTTGTTAGCCGG.................	19	1	1	1.00	1	1	0	0	0	0	0
..........................................................ATTAAGTTGACTTGTAGC..............................................................................................................................................................................	18	2	13	0.08	1	0	0	1	0	0	0
.........................................................................................................................................................................................................TCAAGATGATGAAATATC...............................	18	2	16	0.06	1	0	0	1	0	0	0
....................................................................CTTTTTGCTATGTCCGG.....................................................................................................................................................................	17	2	17	0.06	1	0	0	0	1	0	0
....................................AGATCCAAGTCTCGGGATT...................................................................................................................................................................................................	19	3	18	0.06	1	0	0	0	0	1	0
...................................................................................AGTAAGTCATCCCTGC.......................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	1

CAAACTTTTTACAAAAATTAGAATTTTGGGATAGTTAATAGGTTTAGAGCCCTAATAGTAATTCAATTGAAAATCGATACAGGTCATCTAGTAGGGACGACCGTAAACACCGAACACGGTGAATTAAGTTATTATAAATAAATATCTATAAATTTGTAAAGTCTGCTGTGCACAGATTAGATTGATACTAAAGGAACGTCAAGTTTTACTACGTTATAGAACAACAATCGGACCGTGAAACGCGGTGTTA ************************************************(((..(((((..((((((...))))))(((.(((((((.......))))))))))..(((((....)))))..........((((((((....))))))))..........(((((.....))))).........))))).)))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	M023 head
....................................................................................................................................................................................................CGTCAAGTTTTACTA.......................................	15	0	1	1.00	1	1	0	0	0
............AAAAATCAGAATGTTGGGA...........................................................................................................................................................................................................................	19	2	3	0.67	2	0	2	0	0
....................................................................................................................................................................................................CGTCAAGTTTTACAA.......................................	15	1	20	0.25	5	0	0	5	0
................................................................................................................................................................................................GGTACGTCAAGTTTTA..........................................	16	1	5	0.20	1	0	0	1	0
............AAAAATCAGAATGTTGGG............................................................................................................................................................................................................................	18	2	8	0.13	1	0	1	0	0
............AAAAATCAGAATGTTGGGAG..........................................................................................................................................................................................................................	20	3	16	0.13	2	0	2	0	0
................................................................................................................................................................................................AGAACGACAAGTCTTACTAC......................................	20	3	18	0.06	1	0	0	0	1
................................................................................................................................................................................................GGTACGTCAAGTTTT...........................................	15	1	20	0.05	1	1	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2r:7979840-7980089 -	dsi_4076	GTTT-GAAAAATGTTTTT----------AATCTTAAAACCCTAT----CAATTATCCAAATCT-CG------------------------------------------------------------------------------------------------------------------------GGATTATCATTAAGTTAACTTTTAGCTATGTC------------------------------------------------------------CAGTAG-----A---TCATCCC------------TGCTGGCATTTGT----G---G-CTTGTGCCACTTAATTCAAT----AATATTTATTTATAGATATTTAAACATTTCAGA-----------------------C-GACAC---------------------------------GTGTCTAA--TCTAACTATGA-TTTCCTTGCAGTT--CAAAATGATGCAATATCTTGTTGTTAGCCTGGCACTTTGCGCCACAAT
droSec2	scaffold_1:4826543-4826799 -		GTTT-GGAAGGTGTTTTT----------AATCTTAATATCATAT----CAATTATCCAAATCT-CA----------------------------G-------------------------------------------------------------------------TCTCAAATGAATA-----GGATTATCATTAAGTTAATTTGTAGCTATGTC------------------------------------------------------------CAGTAC-----A---TCATCCC------------TGCTGGGATTTTC--TAT---G-CTTGTGCCACTCAATTA------------TTA-TTATAGATATTTAAACATATCAGA-----------------------C-GACAC---------------------------------GTGTCTAA--TTTAACTATGA-TTTCCTTGCAGTT--CAAAATGATGCAATATCTTGTTGTTAGCCTGGCACTTTGCGCCACAAT
dm3	chr2R:7269773-7270042 -		GTTTTGGAAGATGTTTTT----------AATATTGAGTCCATAT----CAATTATCGAAATTT-CA------------------------------------------------------------------------------------------------------------------------GGATTATCATTTAGTTCATTTTTAGCTATGTC------------------------------------------------------------CAGTAG-----A---TCATCCC------------TGGTGGGATTTTC--TCT---G-CTTGTGCCACTCAATTTA----AAATTATTTATTTATAGACATTTAAACATTTCTAACATT-TGCTAT------CCGAGTCGTACAC---------------------------------GTGTCTAA--TTTAACTATGA-TTTCCTTGCAGTT--CAAAATGATGCAATATCTTGTTGTTAGCCTGGCACTCTGTGCCACAAT
droEre2	scaffold_4845:18524638-18524933 +		GTTT-GAAAGACGCTTTT----------AATATTGAAGCCCTAT----ATATTTTGAAC----A---------------TTTACA-GGATCTCAG-------------------------------------------------------------------------TATTTACCGAATG-----GGAGTATAATTTAGTTCGTTTTTAGCTATGTC------------------------------------------------------------CAATAG-----A---TCATCCC------------CGCTGGCATTTTC--TAA---G-CTTGTGGCACTCAATTTAATAAAAACTATTTATTTATAGCCATTCAAACATTTCAGC-CCC-TGCTAA------CTGAGTCGTACAC---------------------------------GTGTCTAA--TTTAACTATGA-TTTCGTTGCAGTTC-AAAAATGCTGCAATATCTCGTTGTTAGCCTGGCACTTTGCGCCACAAT
droYak3	2R:9690025-9690303 +		ACCC-TC-------TTTT----------GCTATTTAAGCCACAT----CAATTTTCCAAT-----------------------------------------------------------------------------------------------------------------ATTAAATA-----GGAATATTATTTAGCTCAGTTTTAGCTATGTCA-------TC-TATTCAG------------------------------------------CAATAG-----A---TCATCCC------------TGCTGCGGTTTTC--TCT---A-CTTGTGGTACTCAATTTAATAAAAAATATTTATTTATAGCCATTCAAACATTTCAGC-CCC-TTTTAT------CTCAGTCGTACAC---------------------------------GTGTCTAA--TTTAACAATGA-TTTCCTTGCAGTTT-CAAAATGCTGCAATATCTTGTTGTTAGCCTGGCCCTTTGCGCCACCAT
droEug1	scf7180000409462:1236734-1237080 +		TTTT-CAAC-------T-----------TTTATAGAGAATTTTTCTAAATTTTATTAAC----A---------------C-CCAACGAATGACCAACCTATAGCTTCTTTGCTTTACTTAGCATTATTTTTTAAAGCTTATATA-TTT------------------------------T-------------------------------------AA-ATCTGAT---CTCTCATTGTAATAGT-----------------------------------TTGC-----A---CCATCTCTAGTTTTAGTCAAGCTGAGACTTTA--CAT---G-TTTGTGGCACTCAATTTAGTTAAAAATATTTATTTATAGCTTGATAAATCTTTCAGC-ACC-CTT-------------CACGTGCACGTGTCGCAGTTAACTATTATAACTATTTAACTA----------------GATAA-TTTCCTTGCAGCTC-AAAAATGTTGCAATATCTTATAGTTGCCTTGGCACTTAGTGCCACCAT
droBia1	scf7180000301754:1019489-1019803 +		TTCT-AAAAAGTAT---------------ACCTTAAA-----------ATATAATGAAT----A---------------C-TAGA-GGATCAAAGATTTACACCTGCTTATC--------------T-TT-CTAATGCGAATGTGTTTTTTCGTACTATA---------------------------------------------------CTTT----TTCCAAG---CACTCAT------------------------------------------GGTTAG-----A---TCATCTCTAGTTTTTATTATGCTGAGAACTCT--GAC---G-TTTGTGGCACTTAATTAAATTTAAAATATTTATTTATAGCTATGTAAACCCTTGACC-CTC---CTCT------CTGAACCGTACAC---------------------------------GTGTCTAA--TTTAACAATGA-TTGCCTTACAGCTT-AAAAATGTTGCAATATCTGGTGGTTACCCTGGCACTTTGCGCCACAAT
droTak1	scf7180000414560:287099-287365 +		GTTT-GTGT-------ATAAGAATGTCATTTATTGATAAT---------------------------------CTT----------------------------------------------------------------------TTTTTTG-----------------------------------------------------------ATT----TTCCAAA---CCCCAAT------------------------------------------AGTTAA-----GTTCCCATCTCTAGTTTTTATCCAGCTGATATTTTT--GAT---GTTTTGTGGCACTCAATTAAATAAAAAATATTTATTTATAGCTATGTAAATGTTTTACC-CTCCTTTTCA------CTGGGTCGTACAC---------------------------------GTGTCTAA--TTTAACTATGA-TTTCCTTACAGCAC-TAAAATGATGCAATATCTTGTTGTTACCCTGGCACTTTGCGCCACAAT
droEle1	scf7180000491214:2717007-2717331 -		ATGG-TA-GAATATTCT------------TC---------------------------------AT----------AGAAC---A-GGATCT---TTTTGCAATTACTTA-----------CATGAT-TT-CAAAGTTGATATTGTTTTTTTGT-CTTTGCTTTTATATATCTATTGTATG----------------------------------------------------------------CATGTCTAAAATTGACAATAAAAATGTCACGTTTAACAGAT---A---ACATCTCTAGTTTC----TAGCTGTGATTTTTATTAT---GTTTTGTGGCACTGAATCTAATA-AAAATATTTATTTATAGCTATTTACCC---------------TTATCC-------AATTGTACAC---------------------------------GTGTCTTA--TTTAATAATGA-TTTCTTTACAGACT-CATAATGATGCAATATCTTGTGGTGACCCTGGCACTTTGTGCCACGAT
droRho1	scf7180000779263:290722-290990 +		TCAT-AATA-------TT---------ATTT-------------------ATTT----------CT----------AGACT---T-AAAGCT---TTTCGGAACTATT--------------------------------------------------------------------GTATTGTTGA-AGTCATTAAT-----------------------------AAT----------AATACATATGTCTAAAACTGAATAGAAAAATGTCACCTTTAGTACATAAAA---CCATCTCTAGTTTT--------------------------------TATCATTCAAT------AAAAATATTTATTTATAGCCAAGT--------TACC-CTC------TTC-------ACTTGTACAC---------------------------------GTGTCTAA--TTTAACAATGA-TTTCTATTCAGATT-AAAAATGTTGCAATATCTTGTGGTCACCCTGGCACTTTGTGCAACAGT
droFic1	scf7180000453773:203971-204197 -		TTTG-CAAA---GTTCCT----------ACTATCAAGAATTTAT----ACATTTTTAGA----T---------------C-----------------------------------------------------------------------------------------------------------------------------TTACAGATATGTAA-------GAT----------AATAGA-----------------------------------TTGG-----C---TCATCACTA-----------GTTGAAATTTGT--CGA---G-CCTGTGCCACTAAATCTAATAAAACATATTTATTTATAGTTATA-------------------------------------CCCCAC---------------------------------GTGCCTAA--TGTAACATTGC-TTTCGTTTCAGCTT-AAACATGTTGCAATATCTTGTGGTAACCCTGGCACTTTGTGCCTCAAT
droKik1	scf7180000302476:102476-102617 -		ATTT-ATAGCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACCTTTTAGTGTCAT----GTTTTTCATTTATA---------------------------------------------------------------TATTATA-TTATTTAACACGTGCCAAT--TATAATCTTGT-GTTACTTTCAGTTTTCAAAATGCTGCGTTATCTAGTAGTTGCCTTGGCACTGTGTGCCACAAT
droAna3	scaffold_13266:972260-972457 -		GCTG-ATCT-----TTTT----------TTGCATAAAAGCTTAT----ACATTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-----------------------------------------------------------------------------GAAAATAGC--ACT---A-CTAACCCCAATATATTCACTGAAAAGTATTTCATTATAACCT---G--------CCT-------TTCATCAATTTTAAGTGCGACAC---------------------------------GTGCAA-----TAAACTTTAATTGTTATTTCAGCTTTAAAAATGTTGCGACTTT---TGGCTACCCTGGCTCTGTGTGCCACAAT
droBip1	scf7180000396730:1977217-1977446 -		TAAG-CT-TAAAATACTT----------ATT---------------------------------CTGGAGCATTGCTGATT-----TGACTT---TTTCG-------------------------------CAAAGTTTATACA-TTT------------------------------T--------------------------------------------------------TTGT-----------------------------------------------------------------------------AAAAGTCGT--CGCACTA-CTAACCCCA--ATATTCATTAAAACGTATTTCTTTATAACCT---C--------CCT-------TTCATCAATTTTAAGTGCCACAC---------------------------------GTGTCAAAAACTTAA--AAAT-TTTTATTGCAGCTTTAAACATGTTGCGACTTT---TGGCTACCCTGGCTCTGTGTGCCACCAT
dp5	3:13506840-13506908 +		CTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-TTCCGTTTCAGCTTGAAATATGATGCAAAGTATGGCCATCACCCTGGCACTCTGTGCCACAAT
droPer2	scaffold_2:8113351-8113419 -		CTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-TTCCGTTTCAGCTTGAAATATGATGCAAAGTATTGCCATCACCCTGGCACTCTGTGCCACAAT
droWil2	scf2_1100000004513:4667463-4667539 +		ATTA-TTAT-------TTTTGATTGCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGACA-A-CAACATGCTGCGTCTTTTGGCAATTACCCTGGCCTTATGTGCCTCAAT
droVir3	scaffold_12875:13235120-13235180 +		TTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGCAGCC--CAAAATGTTTCATCTTCTGACCATCACCTTGGCCCTCTGCGCCACACT
droMoj3	scaffold_6496:20523132-20523200 +		TCTC-ACTT-------TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTGCAGCT--CAAGATGCTGCGCCTTCTCACCGTCACACTGGCTCTCTGTGCCACGAT
droGri2	scaffold_8526:753-818 +		TGAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAATTGCAGTT-GAAAATGATGCGAGTTGTAATCATCAGCCTGGCCCTCTGTGCCACACT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GTTT-GAAAAATGTTTTT----------AATCTTAAAACCCTAT----CAATTATCCAAATCT-CG------------------------------------------------------------------------------------------------------------------------GGATTATCATTAAGTTAACTTTTAGCTATGTC------------------------------------------------------------CAGTAG-----A---TCATCCC------------TGCTGGCATTTGT----G---G-CTTGTGCCACTTAATTCAAT----AATATTTATTTATAGATATTTAAACATTTCAGA-----------------------C-GACAC---------------------------------GTGTCTAA--TCTAACTATGA-TTTCCTTGCAGTT--CAAAATGATGCAATATCTTGTTGTTAGCCTGGCACTTTGCGCCACAAT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGTTAGCCTGGCACTTT..........	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GTTT-GGAAGGTGTTTTT----------AATCTTAATATCATAT----CAATTATCCAAATCT-CA----------------------------G-------------------------------------------------------------------------TCTCAAATGAATA-----GGATTATCATTAAGTTAATTTGTAGCTATGTC------------------------------------------------------------CAGTAC-----A---TCATCCC------------TGCTGGGATTTTC--TAT---G-CTTGTGCCACTCAATTA------------TTA-TTATAGATATTTAAACATATCAGA-----------------------C-GACAC---------------------------------GTGTCTAA--TTTAACTATGA-TTTCCTTGCAGTT--CAAAATGATGCAATATCTTGTTGTTAGCCTGGCACTTTGCGCCACAAT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTATGA-TTTCCTTGCAG....................................................	19	1	1.00	1	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGCAATATCTTGTTGTT.......................	21	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCTTGTTGTTAGCCT..................	18	1	1.00	1	0	0	1	0

dm3

GTTTTGGAAGATGTTTTT----------AATATTGAGTCCATAT----CAATTATCGAAATTT-CA------------------------------------------------------------------------------------------------------------------------GGATTATCATTTAGTTCATTTTTAGCTATGTC------------------------------------------------------------CAGTAG-----A---TCATCCC------------TGGTGGGATTTTC--TCT---G-CTTGTGCCACTCAATTTA----AAATTATTTATTTATAGACATTTAAACATTTCTAACATT-TGCTAT------CCGAGTCGTACAC---------------------------------GTGTCTAA--TTTAACTATGA-TTTCCTTGCAGTT--CAAAATGATGCAATATCTTGTTGTTAGCCTGGCACTCTGTGCCACAAT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGCAATATCTT.............................	15	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3
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...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAA--TTTAACTATGA-TTTCCTTGC......................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGTTGTTAGCCTGGCA..............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................ATTT-CA------------------------------------------------------------------------------------------------------------------------GGATTATCATTTAGT...................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................ATT-TGCTAT------CCGAGTCGTACAC---------------------------------GTGT.................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................T------CCGAGTCGTACAC---------------------------------GTGTCTAA--TTTAAC.....................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTGTTAGCCTGGCACT............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GTTT-GAAAGACGCTTTT----------AATATTGAAGCCCTAT----ATATTTTGAAC----A---------------TTTACA-GGATCTCAG-------------------------------------------------------------------------TATTTACCGAATG-----GGAGTATAATTTAGTTCGTTTTTAGCTATGTC------------------------------------------------------------CAATAG-----A---TCATCCC------------CGCTGGCATTTTC--TAA---G-CTTGTGGCACTCAATTTAATAAAAACTATTTATTTATAGCCATTCAAACATTTCAGC-CCC-TGCTAA------CTGAGTCGTACAC---------------------------------GTGTCTAA--TTTAACTATGA-TTTCGTTGCAGTTC-AAAAATGCTGCAATATCTCGTTGTTAGCCTGGCACTTTGCGCCACAAT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-AAAAATGCTGCAATAT................................	19	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTAA--TTTAACTATGA-TTTCGTTGCA.....................................................	27	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCGTTGTTAGCCTGGC...............	19	1	1.00	1	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTC-AAAAATGCTGCAATATCTCGTTGTC.......................	29	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTAGCCTGGCACTTTGCGCCA....	23	1	1.00	1	1	0	0	0	0	0	0

droYak3

ACCC-TC-------TTTT----------GCTATTTAAGCCACAT----CAATTTTCCAAT-----------------------------------------------------------------------------------------------------------------ATTAAATA-----GGAATATTATTTAGCTCAGTTTTAGCTATGTCA-------TC-TATTCAG------------------------------------------CAATAG-----A---TCATCCC------------TGCTGCGGTTTTC--TCT---A-CTTGTGGTACTCAATTTAATAAAAAATATTTATTTATAGCCATTCAAACATTTCAGC-CCC-TTTTAT------CTCAGTCGTACAC---------------------------------GTGTCTAA--TTTAACAATGA-TTTCCTTGCAGTTT-CAAAATGCTGCAATATCTTGTTGTTAGCCTGGCCCTTTGCGCCACCAT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCCTGGCCCTTTGCGCC.....	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTTAGCCTGGCCCTTTGCGC......	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCTGGCCCTTTGCGC......	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................G------------------------------------------CAATAG-----A---TCATCCC------------TGCTGC..............................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

TTTT-CAAC-------T-----------TTTATAGAGAATTTTTCTAAATTTTATTAAC----A---------------C-CCAACGAATGACCAACCTATAGCTTCTTTGCTTTACTTAGCATTATTTTTTAAAGCTTATATA-TTT------------------------------T-------------------------------------AA-ATCTGAT---CTCTCATTGTAATAGT-----------------------------------TTGC-----A---CCATCTCTAGTTTTAGTCAAGCTGAGACTTTA--CAT---G-TTTGTGGCACTCAATTTAGTTAAAAATATTTATTTATAGCTTGATAAATCTTTCAGC-ACC-CTT-------------CACGTGCACGTGTCGCAGTTAACTATTATAACTATTTAACTA----------------GATAA-TTTCCTTGCAGCTC-AAAAATGTTGCAATATCTTATAGTTGCCTTGGCACTTAGTGCCACCAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTCT-AAAAAGTAT---------------ACCTTAAA-----------ATATAATGAAT----A---------------C-TAGA-GGATCAAAGATTTACACCTGCTTATC--------------T-TT-CTAATGCGAATGTGTTTTTTCGTACTATA---------------------------------------------------CTTT----TTCCAAG---CACTCAT------------------------------------------GGTTAG-----A---TCATCTCTAGTTTTTATTATGCTGAGAACTCT--GAC---G-TTTGTGGCACTTAATTAAATTTAAAATATTTATTTATAGCTATGTAAACCCTTGACC-CTC---CTCT------CTGAACCGTACAC---------------------------------GTGTCTAA--TTTAACAATGA-TTGCCTTACAGCTT-AAAAATGTTGCAATATCTGGTGGTTACCCTGGCACTTTGCGCCACAAT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GTTT-GTGT-------ATAAGAATGTCATTTATTGATAAT---------------------------------CTT----------------------------------------------------------------------TTTTTTG-----------------------------------------------------------ATT----TTCCAAA---CCCCAAT------------------------------------------AGTTAA-----GTTCCCATCTCTAGTTTTTATCCAGCTGATATTTTT--GAT---GTTTTGTGGCACTCAATTAAATAAAAAATATTTATTTATAGCTATGTAAATGTTTTACC-CTCCTTTTCA------CTGGGTCGTACAC---------------------------------GTGTCTAA--TTTAACTATGA-TTTCCTTACAGCAC-TAAAATGATGCAATATCTTGTTGTTACCCTGGCACTTTGCGCCACAAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATGG-TA-GAATATTCT------------TC---------------------------------AT----------AGAAC---A-GGATCT---TTTTGCAATTACTTA-----------CATGAT-TT-CAAAGTTGATATTGTTTTTTTGT-CTTTGCTTTTATATATCTATTGTATG----------------------------------------------------------------CATGTCTAAAATTGACAATAAAAATGTCACGTTTAACAGAT---A---ACATCTCTAGTTTC----TAGCTGTGATTTTTATTAT---GTTTTGTGGCACTGAATCTAATA-AAAATATTTATTTATAGCTATTTACCC---------------TTATCC-------AATTGTACAC---------------------------------GTGTCTTA--TTTAATAATGA-TTTCTTTACAGACT-CATAATGATGCAATATCTTGTGGTGACCCTGGCACTTTGTGCCACGAT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCAT-AATA-------TT---------ATTT-------------------ATTT----------CT----------AGACT---T-AAAGCT---TTTCGGAACTATT--------------------------------------------------------------------GTATTGTTGA-AGTCATTAAT-----------------------------AAT----------AATACATATGTCTAAAACTGAATAGAAAAATGTCACCTTTAGTACATAAAA---CCATCTCTAGTTTT--------------------------------TATCATTCAAT------AAAAATATTTATTTATAGCCAAGT--------TACC-CTC------TTC-------ACTTGTACAC---------------------------------GTGTCTAA--TTTAACAATGA-TTTCTATTCAGATT-AAAAATGTTGCAATATCTTGTGGTCACCCTGGCACTTTGTGCAACAGT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTTG-CAAA---GTTCCT----------ACTATCAAGAATTTAT----ACATTTTTAGA----T---------------C-----------------------------------------------------------------------------------------------------------------------------TTACAGATATGTAA-------GAT----------AATAGA-----------------------------------TTGG-----C---TCATCACTA-----------GTTGAAATTTGT--CGA---G-CCTGTGCCACTAAATCTAATAAAACATATTTATTTATAGTTATA-------------------------------------CCCCAC---------------------------------GTGCCTAA--TGTAACATTGC-TTTCGTTTCAGCTT-AAACATGTTGCAATATCTTGTGGTAACCCTGGCACTTTGTGCCTCAAT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATTT-ATAGCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACCTTTTAGTGTCAT----GTTTTTCATTTATA---------------------------------------------------------------TATTATA-TTATTTAACACGTGCCAAT--TATAATCTTGT-GTTACTTTCAGTTTTCAAAATGCTGCGTTATCTAGTAGTTGCCTTGGCACTGTGTGCCACAAT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GCTG-ATCT-----TTTT----------TTGCATAAAAGCTTAT----ACATTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-----------------------------------------------------------------------------GAAAATAGC--ACT---A-CTAACCCCAATATATTCACTGAAAAGTATTTCATTATAACCT---G--------CCT-------TTCATCAATTTTAAGTGCGACAC---------------------------------GTGCAA-----TAAACTTTAATTGTTATTTCAGCTTTAAAAATGTTGCGACTTT---TGGCTACCCTGGCTCTGTGTGCCACAAT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................................................................................................................................................................................................................................................TATTTCATTATAACCT---G--------CCT-------TTCATC.......................................................................................................................................	26	1	29.00	29	7	22	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGCTTTAAAAATGTTGCGACT.................................	25	1	22.00	22	1	21	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................T---A-CTAACCCCAATATATTCACTGAAAAG...................................................................................................................................................................................	28	1	13.00	13	2	10	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---TGGCTACCCTGGCTCTGTGTGC......	24	1	13.00	13	4	9	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT---TGGCTACCCTGGCTCTGTGTGC......	25	1	11.00	11	3	7	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---TGGCTACCCTGGCTCTGTGTGCC.....	25	1	9.00	9	0	9	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACCCTGGCTCTGTGTGCCACAA.	27	1	8.00	8	8	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT---TGGCTACCCTGGCTCTGTGTG.......	24	1	8.00	8	5	3	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT---TGGCTACCCTGGCTCTGTGT........	23	1	7.00	7	5	2	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACCCTGGCTCTGTGTGC......	22	1	7.00	7	5	1	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TTCATTATAACCT---G--------CCT-------TTCATCAAT....................................................................................................................................	26	1	7.00	7	6	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---TGGCTACCCTGGCTCTGTGTGCCAC...	27	1	7.00	7	4	3	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGCGACTTT---TGGCTACCCTGGCTC.............	27	1	6.00	6	3	3	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGCGACTTT---TGGCTACCCTGG................	24	1	5.00	5	5	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT---TGGCTACCCTGGCTCTGTGTGCCAC...	28	1	5.00	5	2	3	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................AAGTATTTCATTATAACCT---G--------CCT-------TT...........................................................................................................................................	25	1	5.00	5	1	4	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---TGGCTACCCTGGCTCTGTGTGCCAC...	26	1	5.00	5	2	3	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................TAACCCCAATATATTCACTGAAAAGTAT................................................................................................................................................................................	28	1	4.00	4	0	4	0	0	0	0
..............................................................................................................................................................................................................................................T-----------------------------------------------------------------------------GAAAATAGC--ACT---A-CTAACCCCAATATA...............................................................................................................................................................................................	28	1	4.00	4	1	3	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAATGTTGCGACTTT---TGGCTACCC...................	27	1	4.00	4	0	4	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................TATAACCT---G--------CCT-------TTCATCAATTTTAAG..............................................................................................................................	27	1	4.00	4	3	1	0	0	0	0
..............................................................................................................................................................................................................................................T-----------------------------------------------------------------------------GAAAATAGC--ACT---A-CTAACCCCAATA.................................................................................................................................................................................................	26	1	3.00	3	0	3	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGACTTT---TGGCTACCCTGGCTCTGTG.........	28	1	3.00	3	2	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTT---TGGCTACCCTGGCTCTGTGTGC......	28	1	3.00	3	2	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---TGGCTACCCTGGCTCTGTGTGC......	23	1	3.00	3	1	2	0	0	0	0
.....................................................TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-----------------------------------------------------------------------------GAAAATAGC--ACT---A-CTAACCCC.....................................................................................................................................................................................................	27	1	3.00	3	2	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGCTTTAAAAATGTTGCGAC..................................	24	1	3.00	3	0	3	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGCTTTAAAAATGTTGCGACTTT---............................	27	1	3.00	3	1	2	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGTGCGACAC---------------------------------GTGCAA-----TAAACTT...................................................................	27	1	3.00	3	3	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACCCTGGCTCTGTGTGCC.....	23	1	3.00	3	1	2	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................TTCATCAATTTTAAGTGCGACAC---------------------------------GTG..................................................................................	26	1	3.00	3	2	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACCCTGGCTCTGTGTGCCACAAT	28	1	3.00	3	3	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACCCTGGCTCTGTGTGCCAC...	25	1	3.00	3	2	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---TGGCTACCCTGGCTCTGTGTGCC.....	24	1	3.00	3	0	3	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACCCTGGCTCTGTGTGCCACA..	26	1	3.00	3	1	2	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---TGGCTACCCTGGCTCTGTGTG.......	23	1	3.00	3	1	2	0	0	0	0
...................................................TTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-----------------------------------------------------------------------------GAAAATAGC--ACT---A-CTAACCC......................................................................................................................................................................................................	28	1	3.00	3	1	2	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT---TGGCTACCCTGGCTCTGTG.........	22	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGACTTT---TGGCTACCCTGGCTCT............	25	1	2.00	2	1	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAATGTTGCGACTTT---TGGCTACCCT..................	28	1	2.00	2	2	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................TAACCT---G--------CCT-------TTCATCAATTTTAAGTGC...........................................................................................................................	28	1	2.00	2	1	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................CCCAATATATTCACTGAAAAGTATTT..............................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGACTTT---TGGCTACCCTGGCTCTG...........	26	1	2.00	2	2	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACCCTGGCTCTGTG.........	19	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---TGGCTACCCTGGCTCTGTGT........	22	1	2.00	2	2	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................TTATAACCT---G--------CCT-------TTCATCAATTTTAAG..............................................................................................................................	28	1	2.00	2	1	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGACTTT---TGGCTACCCTGGCTC.............	24	1	2.00	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGCTTTAAAAATGTTGCGACC.................................	25	1	2.00	2	0	2	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAAGTGCGACAC---------------------------------GTGCAA-----TAAAC.....................................................................	26	1	2.00	2	0	2	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TTTCATTATAACCT---G--------CCT-------TTCATCAAT....................................................................................................................................	27	1	2.00	2	1	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................AAGTATTTCATTATAACCT---G--------CCT-------T............................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCCTGGCTCTGTGTGCCACAAT	26	1	2.00	2	1	1	0	0	0	0
............................................................................................................................................................................................................................................TGT-----------------------------------------------------------------------------GAAAATAGC--ACT---A-CTAACCCCAATA.................................................................................................................................................................................................	28	1	2.00	2	1	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAAATGTTGCGACTTT---TGGCTACC....................	28	1	2.00	2	0	2	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................TAGC--ACT---A-CTAACCCCAATATATTCACT.........................................................................................................................................................................................	28	1	2.00	2	1	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---TGGCTACCCTGGCTCTGTGTGCCACAA.	28	1	2.00	2	1	1	0	0	0	0
.......................................................T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-----------------------------------------------------------------------------GAAAATAGC--ACT---A-CTAACCCC.....................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................CCCAATATATTCACTGAAAAGTAT................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCTGGCTCTGTGTGCCACAA.	23	1	2.00	2	2	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGCTTTAAAAATGTTGCGACTT................................	25	1	2.00	2	2	0	0	0	0	0
....................................................TTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-----------------------------------------------------------------------------GAAAATAGC--ACT---A-CTAACCCC.....................................................................................................................................................................................................	28	1	2.00	2	1	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TTCATTATAACCT---G--------CCT-------TTCATCAATTT..................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCTGGCTCTGTGTGCCACAAT	24	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................T---A-CTAACCCCAATATATTCACTGAA......................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACCCTGGCTCTGTGTG.......	21	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................CCCCAATATATTCACTGAAAAGTAT................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCGACTTT---TGGCTACCCTGGCTC.............	25	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................A-CTAACCCCAATATATTCACTGAA......................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TGAAAAGTATTTCATTATAACCT---G--------CCT-------.............................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAAATGTTGCGACTTT---TGGCTAC.....................	27	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTTGCGACTTT---TGGCTACCCTG.................	26	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................TATTTCATTATAACCT---G--------CC.....................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................GC--ACT---A-CTAACCCCAATATATTCACT.........................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-----TAAACTTTAATTGTTATTTCAGCTT.................................................	27	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................AGC--ACT---A-CTAACCCCAATATATTCACT.........................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTTGCGACTTT---TGGCTACCCTGG................	27	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................AAGTATTTCATTATAACCT---G--------CCC-------.............................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................AAAGTATTTCATTATAACCT---G--------CCT-------TT...........................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGTTGCGACTTT---TGGCTACCCTGG................	28	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTAAGTGCGACAC---------------------------------GTGCAA-----TA........................................................................	25	1	1.00	1	0	1	0	0	0	0
.....................................................TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-----------------------------------------------------------------------------GAAAATAGC--ACT---A-CTAACCC......................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---TGGCTACCCTGGCTCTGTG.........	21	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................AACCT---G--------CCT-------TTCATCAATTTTAAGTGC...........................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................TCATTATAACCT---G--------CCT-------TTCATCAATT...................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TTTCATTATAACCT---G--------CCT-------TTCATC.......................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................ACT---A-CTAACCCCAATATATTCACTGA.......................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................CTGAAAAGTATTTCATTATAACCT---G--------CC.....................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT---TGGCTACCCTGGCTCTGTGC........	23	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTACCCTGGCTCTGTGTGCCACAA.	26	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................AAGTATTTCATTATAACCT---G--------CC.....................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCGACTTT---TGGCTACCCTGGCTC.............	26	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................ATTATAACCT---G--------CCT-------TTCATCAATTT..................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTTGCGACTTT---TGGCTACCCTGGC...............	28	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................C--ACT---A-CTAACCCCAATATATTCAC..........................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGCGACTTT---TGGCTACCCTGGC...............	25	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................T-------TTCATCAATTTTAAGTGCGACAC---------------------------------GTG..................................................................................	27	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AAATAGC--ACT---A-CTAACCCCAATATA...............................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGCTTTAAAAATGTTGCGACC.................................	24	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---TGGCTACCCTGGCTCTGTGTGCCACA..	28	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGTGCGACAC---------------------------------GTGCAA-----TAAACT....................................................................	26	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................ACAC---------------------------------GTGCAA-----TAAACTTTAATTGTTAT.........................................................	27	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................T---A-CTAACCCCAATATATTCACTGAAAAA...................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---TGGCTACCCTGGCTCTGTGTGCT.....	25	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................C--ACT---A-CTAACCCCAATATATTCACTGA.......................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TTCATTATAACCT---G--------CCT-------TTCATC.......................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................C--ACT---A-CTAACCCCAATATATTCACTGAAA.....................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................T---A-CTAACCCCAATATATTCACTGA.......................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................TAACCCCAATATATTCACTGAA......................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................TCATCAATTTTAAGTGCGACAC---------------------------------GTGCA................................................................................	27	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTACCCTGGCTCTGTGTGCCACAAT	27	1	1.00	1	1	0	0	0	0	0
........................................TTAT----ACATTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-----------------------------------------------------------------------------GAAAATAGC--AC...................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGCTTTAAAAATGTTGCGATC.................................	25	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT---TGGCTACCCTGGCTCTGTGTGCCA....	27	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGCGACAC---------------------------------GTGCAA-----TAAACTT...................................................................	24	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACCCTGGCTCTGTGTGCCACAAA	28	1	1.00	1	0	1	0	0	0	0
....................................................TTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-----------------------------------------------------------------------------GAAAATAGC--ACT---A-CTAACCC......................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGTGCGACAC---------------------------------GTGCAA-----TAAAC.....................................................................	25	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT---TGGCTACCCTGGCTCTGTGTGCC.....	26	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTTGCGACTTT---TGGCTACCCT..................	25	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTTGCGACTTT---TGGCTACC....................	23	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTT---TGGCTACCCTGGCTCTGT..........	23	1	1.00	1	1	0	0	0	0	0
.....................................................TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-----------------------------------------------------------------------------GAAAATAGC--ACT---A-CTAACC.......................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCGACTTT---TGGCTACC....................	19	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGCTTTAAAAATGTTGCGACTTT---TG..........................	28	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................TCATTATAACCT---G--------CCT-------TTCATCAAC....................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGCGACTTT---TGGCTACCCTG.................	23	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................TATAACCT---G--------CCT-------TTCATCAATTTTAA...............................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGTGCGACAC---------------------------------GTGCAA-----TAAACTTT..................................................................	27	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTGCGACAC---------------------------------GTGCAA-----TAAACTT...................................................................	25	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................C--ACT---A-CTAACCCCAATATATTCACTG........................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................T---A-CTAACCCCAATATATTCACT.........................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GTATTTCATTATAACCT---G--------CC.....................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTGCGACTTT---TGGCT.......................	19	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................TATTTCATTATAACCT---G--------CCT-------TTCATCAA.....................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTT---TGGCTACCCTGGCTCTGTG.........	25	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTGCGACAC---------------------------------GTGCAA-----TAAACTTT..................................................................	26	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTT---TGGCTACCCTGGCTCTGTGTGC......	26	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................AAAATAGC--ACT---A-CTAACCCCAATATA...............................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................TAACCCCAATATATTCACTGAAAAGTA.................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGCGACTTT---TGGCTACCCTGGCTC.............	28	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................AGTATTTCATTATAACCT---G--------CCT-------TTCAT........................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGCTTTAAAAATGTTGCGACTT................................	26	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---TGGCTACCCTGGCTCTGTGTGCCACAA.	29	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---TGGCTACCCTGGCTCTGTGTGAA.....	25	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GTATTTCATTATAACCT---G--------CCT-------TTCATC.......................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGTTGCGACTTT---TGGCTACCCC..................	26	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGTTGCGACTTT---TGGCTACCCT..................	26	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................C--ACT---A-CTAACCCCAATATATTCACTGAA......................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---TGGCTACCCTGGCTCTGTGTGCCA....	26	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTGCGACAC---------------------------------GTGCAA-----TAAACTTTAAT...............................................................	29	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................CCCCAATATATTCACTGAAAAGTATTT..............................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCGACAC---------------------------------GTGCAA-----TAAACTTTAAT...............................................................	27	1	1.00	1	1	0	0	0	0	0
..............TTTT----------TTGCATAAAAGCTTAT----ACATTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................CAATATATTCACTGAAAAG...................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AATAGC--ACT---A-CTAACCCCAATATATT.............................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................TCATCAATTTTAAGTGCGACAC---------------------------------GTGC.................................................................................	26	1	1.00	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................ATTTCATTATAACCT---G--------CCT-------TTCATC.......................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGACTTT---TGGCTACCCTGGC...............	22	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCGACTTT---TGGCTACCCTGGCTT.............	26	1	1.00	1	0	0	0	0	1	0
..................................................ATTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-----------------------------------------------------------------------------GAAAATAGC--ACT---A-CTAAC........................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................C--ACT---A-CTAACCCCAATATATTCACC.........................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
...................................................TTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-----------------------------------------------------------------------------GAAAATAGC--ACT---A-CTAACC.......................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................TATAACCT---G--------CCT-------TTCATCAATT...................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................T---A-CTAACCCCAATATATTCACTGAAA.....................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................TCATCAATTTTAAGTGCGACAC---------------------------------GTG..................................................................................	25	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGCTTTAAAAATGTTGCGACTTC---............................	27	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................TTATAACCT---G--------CCT-------TTCATCAATT...................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT---TGGCTACCCTGGCTCTG...........	20	1	1.00	1	1	0	0	0	0	0
.................................................CATTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-----------------------------------------------------------------------------GAAAATAGC--ACT---A-CTAA.........................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTT---TGGCTACCCTGGCTCTGTGTGCC.....	27	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TTCATTATAACCT---G--------CCT-------TTCATCAATT...................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................TGT-----------------------------------------------------------------------------GAAAATAGC--ACT---A-CTAACCCCAATAT................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................CATCAATTTTAAGTGCGACAC---------------------------------GTGCAA-----A.........................................................................	28	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGCGACTTT---TGGCTACCCT..................	22	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCTTTAAAAATGTTGCGACTTT---TGG.........................	28	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT---TGGCTACCCTGGCTCTGTGTGCCACA..	29	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................TAGC--ACT---A-CTAACCCCAATATATTCACC.........................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
.....................................................TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-----------------------------------------------------------------------------GAAAATAGC--ACT---A-CTAACCCCAA...................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GACAC---------------------------------GTGCAA-----TAAACTTTAATTGTTAT.........................................................	28	1	1.00	1	0	1	0	0	0	0

droBip1

TAAG-CT-TAAAATACTT----------ATT---------------------------------CTGGAGCATTGCTGATT-----TGACTT---TTTCG-------------------------------CAAAGTTTATACA-TTT------------------------------T--------------------------------------------------------TTGT-----------------------------------------------------------------------------AAAAGTCGT--CGCACTA-CTAACCCCA--ATATTCATTAAAACGTATTTCTTTATAACCT---C--------CCT-------TTCATCAATTTTAAGTGCCACAC---------------------------------GTGTCAAAAACTTAA--AAAT-TTTTATTGCAGCTTTAAACATGTTGCGACTTT---TGGCTACCCTGGCTCTGTGTGCCACCAT	Size	Hit Count	Total Norm	Total
No Reads

dp5

CTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-TTCCGTTTCAGCTTGAAATATGATGCAAAGTATGGCCATCACCCTGGCACTCTGTGCCACAAT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATGCAAAGTATGGCCATCAC.....................	24	1	2.00	2	0	0	0	0	0	0	0	2	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGCCATCACCCTGGCACTCTGTGC......	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

CTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-TTCCGTTTCAGCTTGAAATATGATGCAAAGTATTGCCATCACCCTGGCACTCTGTGCCACAAT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATTGCCATCACCCTG.................	19	1	1.00	1	0	1	0	0	0	0

droWil2

ATTA-TTAT-------TTTTGATTGCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGACA-A-CAACATGCTGCGTCTTTTGGCAATTACCCTGGCCTTATGTGCCTCAAT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATGCTGCGTCTTTTGGC...........................	21	1	2.00	2	0	0	0	2	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-CAACATGCTGCGTCTTTTGGC...........................	22	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCTGCGTCTTTTGGC...........................	18	2	1.00	2	0	0	0	2	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTACCCTGGCCTTATGTGC......	21	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACA-A-CAACATGCTGCGT...................................	19	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-A-CAACATGCTGCGTCTTTTGGCA..........................	24	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-A-CAACATGCTGCGTCTTTTGGC...........................	23	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGCTGCGTCTTTTGGCAAT........................	23	2	0.50	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCTGCGTCTTTTGGCA..........................	19	2	0.50	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGCTGCGTCTTTTGGC...........................	20	2	0.50	1	0	0	1	0	0

droVir3

TTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGCAGCC--CAAAATGTTTCATCTTCTGACCATCACCTTGGCCCTCTGCGCCACACT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGACCATCACCTTGGCCCT............	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTCATCTTCTGACC..........................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAATGTTTCATCTTCTGACCATCA......................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TCTC-ACTT-------TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTGCAGCT--CAAGATGCTGCGCCTTCTCACCGTCACACTGGCTCTCTGTGCCACGAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTCACCGTCACACTGGCTCT............	23	1	1.00	1	1	0	0	0	0	0

droGri2

TGAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAATTGCAGTT-GAAAATGATGCGAGTTGTAATCATCAGCCTGGCCCTCTGTGCCACACT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCCTGGCCCTCTGTGCCAC...	23	2	0.50	1	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGATGCGAGTTGTAAT...........................	21	2	0.50	1	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGATGCGAGTTGTAATC..........................	21	2	0.50	1	0	1

dsi_4076

2r:7979890-7980039 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads