ID:

dsi_4074

 Coordinate:

2r:9710954-9711103 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.5 -7.3 -6.7 -6.6

Flybase annnotation

exon [2r_9710832_9710953_-]; CDS [2r_9710832_9710953_-]; intron [2r_9710954_9711329_-]

Repeatable elements

NameClassFamilyStrand
DNAREP1_DYakRCHelitron-
mature
star
  1. 2l:11539402-11539416 -
  2. dsi_4074  2r:9710996-9711010 -
  3. 3l:3090707-3090721 +
  4. 3l:11740995-11741009 -
  5. 3l:14304665-14304679 -
  6. 3l:21694580-21694594 +

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTCTTATATGACAAATGATACTTTCTGGTTTTTATACCCGTTACTCGTAGAGTGAAAGGGTATACTAGATTCGTTCAAAAGTATGTAACAGGCAGAAGGACTATACAAAGTATATATATTCTTTATCAGGATCTGGTCAAAAAGAAAAGTTTTGTGAAATTCCAACCAAATAATAAATTCCTTTGGCTTTAATCCTTTAGGTTCTCCGTGCGCGTGGGCAACAACGCAGCCAAGGGAATTCATTTGCGTC
****************************************************************************..........................................(((..........(((........)))..........)))******************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 O002
Head
 SRR902009
testis
 M053
female body
............................................................................AAAAGTATGTAACAGGCAGAAGGACT.................................................................................................................................................... 26 0 1 6.00 6 2 0 1 0 2 1 0 0 0 0
............................................................................AAAAGTATGTAACAAGCAGAAGGACT.................................................................................................................................................... 26 1 1 6.00 6 0 0 5 0 0 1 0 0 0 0
............................................................................AAAAGTATGTAACAGGCAGAAGGA...................................................................................................................................................... 24 0 20 3.65 73 0 73 0 0 0 0 0 0 0 0
.....................................................................TTCGTTCAAAAGTATGTAACAGGCAGA.......................................................................................................................................................... 27 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
............................................................................AAAAGTATGTAACAGGCAGTAGGACT.................................................................................................................................................... 26 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
............................................TCGTAGAGTGAAAGGGTATACTAGA..................................................................................................................................................................................... 25 0 6 2.00 12 0 9 0 1 0 0 2 0 0 0
............................................................................AAAAGTATGTAACAGGTAGAAGGACTA................................................................................................................................................... 27 1 2 1.50 3 3 0 0 0 0 0 0 0 0 0
............................................................................AAAAGTATGTAATAGGCAGAAGGACT.................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................AAAAGTATGTAACAGGCAGAAGAACTA................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................AAAAGTATGTAACAGGCAGAAGGACTT................................................................................................................................................... 27 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0
.................................................................................TATGTAACAGGCAGAAGGACTATA................................................................................................................................................. 24 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0
.....................................................................TTCGTTCAAAAGTATGTAACAGGC............................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
............................TTTTTTTACCCGTTACTCGTAGAGTGAAA................................................................................................................................................................................................. 29 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................................................................TTCGTTCAAAAGTATGTAACAGGCA............................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................................................AAAAGTATGTAACAGGCAGAAGGACTA................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................ACTATACAAAGTATATATA.................................................................................................................................... 19 0 4 0.75 3 0 0 0 0 0 0 0 3 0 0
...............................................TAGAGTGAAAGGGTATACTAGATT................................................................................................................................................................................... 24 0 6 0.67 4 0 4 0 0 0 0 0 0 0 0
............................................................................AAAAGTATGTAACAGGCAGTAGGATT.................................................................................................................................................... 26 2 18 0.56 10 9 0 0 0 0 0 0 0 1 0
.............................TTTTATACCCGTTACTCGTAGAGTGA................................................................................................................................................................................................... 26 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0
.................................................................................TATGTAACAGGCAGAAGGACTATAC................................................................................................................................................ 25 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................TAACAGGCAGAAGGACTATACA............................................................................................................................................... 22 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
............................................................................AAAAGTATGTAACAGACAGAAGGACTTT.................................................................................................................................................. 28 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...................................................................................TGTAACAGGCAGAAGGACT.................................................................................................................................................... 19 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.................................................................................TATGTAACAGGCAGAAGGACT.................................................................................................................................................... 21 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.........................................................................TTCAAAAGTATGTAACAGGCAGAAG........................................................................................................................................................ 25 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................ATCCGGTCAAAAAGAAAA...................................................................................................... 18 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0
............................................................................AAAAGTATGTAGCAGGCAGTAGGACT.................................................................................................................................................... 26 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
............................................................................AAGAGTATGTAACAGGCAGAAGGACT.................................................................................................................................................... 26 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0
.................................................................................TATGTAACAGGCAGAAGGACTATACA............................................................................................................................................... 26 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
............................................................................AAAAGTATGTAACAGGCAGAAGGAC..................................................................................................................................................... 25 0 4 0.50 2 0 0 0 0 0 1 0 0 0 1
............................................TCGTAGAGTGAAAGGGTATACTAG...................................................................................................................................................................................... 24 0 7 0.43 3 0 2 0 0 0 0 1 0 0 0
..........................................................................TCAAAAGTATGAAACAGGCAGAAGGA...................................................................................................................................................... 26 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
............................................................................AAAAGTATGTAACAGGCAGAAGGACTTC.................................................................................................................................................. 28 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0
............................................................................AAAAGTATGTAACAGGCAGTAGGAC..................................................................................................................................................... 25 1 6 0.33 2 2 0 0 0 0 0 0 0 0 0
............................TGTTTATACCCGTTACTCGTAGAGTGAA.................................................................................................................................................................................................. 28 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0
...............................................TAGAGTGAAAGGGTATACTAGAT.................................................................................................................................................................................... 23 0 6 0.33 2 0 2 0 0 0 0 0 0 0 0
............................................................................AAAAGTATGTAACAGGCCGAAGGATTA................................................................................................................................................... 27 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0
............................................................................AAAAGTATGTAACAGGCAGAAGAACTT................................................................................................................................................... 27 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..............................TTTATACCCGTTACTCGTAGAGTGAGA................................................................................................................................................................................................. 27 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0
............................................................................AAAAGTGTGTAACAGGCAGAAGGACAA................................................................................................................................................... 27 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0
......................................CGTTACTCGTAGAGTGAAAGGGTA............................................................................................................................................................................................ 24 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0
............................................................................AAAAGTATGTAACAGGCTGAAGGTTTA................................................................................................................................................... 27 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0
.......................................GTTACTCGTAGAGTGAAAGGGTATA.......................................................................................................................................................................................... 25 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0
............................................................................AAAAGTATGTAGCAGGCAGTAGGACAA................................................................................................................................................... 27 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0
............................................TCGTAGAGTGAAAGGGT............................................................................................................................................................................................. 17 0 10 0.20 2 0 2 0 0 0 0 0 0 0 0
.................................................................................TATGTAACAGGCAGAAGGA...................................................................................................................................................... 19 0 20 0.20 4 0 0 0 0 0 0 4 0 0 0
............................................TCGTAGAGTGAAAGGGTATACTAGATTC.................................................................................................................................................................................. 28 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0
............................TGTTTTTACCCGTTACTCGTAGAGTGA................................................................................................................................................................................................... 27 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0
...........................................CTCGTAGAGTGAAAGGGTATACTAGA..................................................................................................................................................................................... 26 0 6 0.17 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................GAAAAGTTTTGTGAA............................................................................................ 15 0 6 0.17 1 0 0 0 1 0 0 0 0 0 0
............................................TCGTAGAGTGAAAGGGTATACTAGAT.................................................................................................................................................................................... 26 0 6 0.17 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................ACAGCCAAGGGAATT.......... 15 1 20 0.15 3 0 2 1 0 0 0 0 0 0 0
.............................TTTTATACCCGTTACTCGTAGAGT..................................................................................................................................................................................................... 24 0 20 0.15 3 0 0 0 3 0 0 0 0 0 0
.........................................TACTCGTAGAGTGAAAGGGTATA.......................................................................................................................................................................................... 23 0 7 0.14 1 0 1 0 0 0 0 0 0 0 0
........................................TTACTCGTAGAGTGAAAGGGTATA.......................................................................................................................................................................................... 24 0 7 0.14 1 0 1 0 0 0 0 0 0 0 0
............................................TCGTAGAGTGAAAGGGTATACTA....................................................................................................................................................................................... 23 0 7 0.14 1 0 1 0 0 0 0 0 0 0 0
.........................................TACTCGTAGAGTGAAAGGGTATACT........................................................................................................................................................................................ 25 0 7 0.14 1 0 0 1 0 0 0 0 0 0 0
............................................................................AAAAGTATGTAACAGGCAGTAGACCT.................................................................................................................................................... 26 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0
............................................TCGTAGAGTGAAAGGGTATAC......................................................................................................................................................................................... 21 0 7 0.14 1 0 1 0 0 0 0 0 0 0 0
.................................................TAGTGAAAGGGTATACTAGATTCGT................................................................................................................................................................................ 25 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0
............................................................................AAAAGAATGTAACAGGCAGAAGGAC..................................................................................................................................................... 25 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0
.......................................................................TGTTCAAAAGTATGTCACAGGCAGAAGG....................................................................................................................................................... 28 2 8 0.13 1 0 1 0 0 0 0 0 0 0 0
...................................................GTGAAAGGGTATACTAGATTC.................................................................................................................................................................................. 21 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0
............................................TCGTAGAGTGAAAGGGTA............................................................................................................................................................................................ 18 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0
............................TTTTTATACCCGTTACTCGTAGAGT..................................................................................................................................................................................................... 25 0 20 0.10 2 0 0 0 0 0 2 0 0 0 0
............................................................................AAAAGTATGTAACAGGCCGAAGGACA.................................................................................................................................................... 26 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0
...............................................TAGAGTGAAAGGGTATA.......................................................................................................................................................................................... 17 0 10 0.10 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................ATATATATTCTTGATCAGGATCTGAT................................................................................................................. 26 2 10 0.10 1 0 1 0 0 0 0 0 0 0 0
............................................TCGTAGAGTGAAAGGG.............................................................................................................................................................................................. 16 0 10 0.10 1 0 1 0 0 0 0 0 0 0 0
............................................................................AAAAGTATGTAACAGGC............................................................................................................................................................. 17 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
............................................TCGTAGAGTGAAAGG............................................................................................................................................................................................... 15 0 10 0.10 1 0 1 0 0 0 0 0 0 0 0
............................................................................AAAAGTATGTAACAGGCAGAAGGAATA................................................................................................................................................... 27 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0
....................................................TGAAAGGGTATACTAGATTCG................................................................................................................................................................................. 21 0 10 0.10 1 0 0 0 0 0 0 0 0 1 0
............................................................................AAAAGTATGTAACAGGCAGTAGGACA.................................................................................................................................................... 26 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0
...............................TTTTACCCGTTACTCGTAGAGTGAA.................................................................................................................................................................................................. 25 1 11 0.09 1 0 0 0 0 0 0 1 0 0 0
..............................................GTAGAGTGAAAGGGTATACTAGATTA.................................................................................................................................................................................. 26 1 12 0.08 1 0 0 0 1 0 0 0 0 0 0
...........................................................................CAAAAGTATGTAACAGGCAGTAGGAAT.................................................................................................................................................... 27 2 12 0.08 1 1 0 0 0 0 0 0 0 0 0
............................................................................AAAAGTGTGTAACAGGCAGAAGGACA.................................................................................................................................................... 26 2 13 0.08 1 1 0 0 0 0 0 0 0 0 0
............................................TCGTAGAGTGAAAGGGTATACTAA...................................................................................................................................................................................... 24 1 14 0.07 1 1 0 0 0 0 0 0 0 0 0
..................................................AGTGAAAGGGTACACTAGATT................................................................................................................................................................................... 21 1 15 0.07 1 0 1 0 0 0 0 0 0 0 0
............................................................................AAAAGTATGTAACAGGCCGAAGGATT.................................................................................................................................................... 26 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0
...........................................................................GAAAAGTATGTAACAAGCAGAAGGACT.................................................................................................................................................... 27 2 16 0.06 1 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................AACACAGCCAAGGGAA............ 16 1 16 0.06 1 0 0 0 1 0 0 0 0 0 0
............................................TCGTAGAGTGAAAGGGTATACTATT..................................................................................................................................................................................... 25 2 16 0.06 1 0 0 0 0 0 0 1 0 0 0
.....................................................GAAAGGGTATACTAGA..................................................................................................................................................................................... 16 0 17 0.06 1 0 1 0 0 0 0 0 0 0 0
............................................................................AAAAGTATGTAACAGGCCGAAGGACAT................................................................................................................................................... 27 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0
............................................................................AAAAGTATGTAATAGGCAGAAGGATT.................................................................................................................................................... 26 2 19 0.05 1 0 1 0 0 0 0 0 0 0 0
...........................................................................CAAAAGTATGTAACAGGCAGAAGGAA..................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
................................TATACCCGTTACTCGTAGAGT..................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
............................TTTTTATACCAGTTACTCGTAGAG...................................................................................................................................................................................................... 24 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
...............................................TAGAGTGAAAGGGTATACTAGCCTCT................................................................................................................................................................................. 26 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CACAGCCAAGGGAAT........... 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
............................................................................AAAAGTATGTAACAGGCTGAAGGATT.................................................................................................................................................... 26 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.............................TTTTATACCCGTTACTCGT.......................................................................................................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...................................................................................TGTAACAGGCAGAAGGA...................................................................................................................................................... 17 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
............................TTTTTATACCCGTTACTCG........................................................................................................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
............................................................................AAAAGTATGTAACAGGCAGAAGTATT.................................................................................................................................................... 26 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

CAGAATATACTGTTTACTATGAAAGACCAAAAATATGGGCAATGAGCATCTCACTTTCCCATATGATCTAAGCAAGTTTTCATACATTGTCCGTCTTCCTGATATGTTTCATATATATAAGAAATAGTCCTAGACCAGTTTTTCTTTTCAAAACACTTTAAGGTTGGTTTATTATTTAAGGAAACCGAAATTAGGAAATCCAAGAGGCACGCGCACCCGTTGTTGCGTCGGTTCCCTTAAGTAAACGCAG
********************************************************************************************..........................................(((..........(((........)))..........)))**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 O002
Head
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M025
embryo
.............................................................................TTTCATACAGTGTCCGTCTTCTTGA.................................................................................................................................................... 25 2 2 1.00 2 0 0 0 2 0 0 0 0 0 0 0
...............................................................................TCATACATTGTTCGTCTTCCTGAAAT................................................................................................................................................. 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................AAGCAAGTTTTCATACATTGTCCGTCTT......................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TTAAGGTTCGGTTATTATTTA........................................................................ 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................CTGATATGTTTCATATATATA................................................................................................................................... 21 0 3 1.00 3 0 0 0 0 0 0 3 0 0 0 0
....................................................................................................GATATGTTTCATATATATAAG................................................................................................................................. 21 0 4 0.75 3 0 0 0 0 0 0 0 3 0 0 0
..................................................................................................CTGATATGTTTCATATATATAAG................................................................................................................................. 23 0 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0
....................................................................................CATTGTCCGTCTTCCTGATA.................................................................................................................................................. 20 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................CTAAGCAAGTTTTCATAAATTGTCCGT............................................................................................................................................................ 27 1 5 0.40 2 0 1 0 0 1 0 0 0 0 0 0
.....................................................................AAGCAAGTTTTCATAAATTGTCCGTCTT......................................................................................................................................................... 28 1 5 0.40 2 0 2 0 0 0 0 0 0 0 0 0
........................................................TCCCATATGATCTAAGCAAGTTT........................................................................................................................................................................... 23 0 5 0.40 2 0 2 0 0 0 0 0 0 0 0 0
......................................................................AGCAAGTTTTCATAAATTGTCCGT............................................................................................................................................................ 24 1 7 0.29 2 0 1 0 0 1 0 0 0 0 0 0
.........................ACCAAAAATATGGGGAATGAGCATCT....................................................................................................................................................................................................... 26 1 7 0.29 2 0 0 1 0 0 0 0 1 0 0 0
.........................................................CCCATATGATCTAAGCAAGTTT........................................................................................................................................................................... 22 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................AGCAAGTTTTCATAAATTGTCCGTCTT......................................................................................................................................................... 27 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................TGATATGTTTCATATA....................................................................................................................................... 16 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
......................................................TTTCCGATATGATCTAAGCAAGTTT........................................................................................................................................................................... 25 1 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0
........................................................TCCCATATGATCTAAGCAAGT............................................................................................................................................................................. 21 0 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0
...........................................GAGCATCTCACTTTCCCATATGATCT..................................................................................................................................................................................... 26 0 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1
...............................................................................TCATACAATGTCCGTCTTCCTG..................................................................................................................................................... 22 1 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0
.........................ACCACAAATATGGGGAATGAGCATCT....................................................................................................................................................................................................... 26 2 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................TCAGCAAGTTTTCATAAATTGTCCGT............................................................................................................................................................ 26 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
..........................................AGAGCATCTCACTTTCCCATATGAT....................................................................................................................................................................................... 25 1 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................TGTTTCATATATATAAG................................................................................................................................. 17 0 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0
.......................AGTGCAAAAATATGGGCAATTAGCATCT....................................................................................................................................................................................................... 28 3 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0
...............................................................................TCATAAATTGTCCGTCTTCCTG..................................................................................................................................................... 22 1 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................TATGATATAAGCAAGTTTTCATACA.................................................................................................................................................................... 25 1 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0
...........................................GAGCATCTCACTTTCCCATATGATCTAAT.................................................................................................................................................................................. 29 1 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0
............................AAAAATATGGGCAATGAGCATCT....................................................................................................................................................................................................... 23 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
...............................................................................TCATACATTGTCCGTCTTC........................................................................................................................................................ 19 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
............................AAAAATATGGGCAATGAGCATCTCA..................................................................................................................................................................................................... 25 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
...........................CAAAAATATGGGCAATGAGCATCT....................................................................................................................................................................................................... 24 0 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0
....................................GGGCAATGAATATGTCACTTTCCCAT............................................................................................................................................................................................ 26 3 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0
............................AAAAATATGGGCAATGAGCAT......................................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TTTAAGGTCGGTTTA............................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
............................AAAAATATGGGCAATG.............................................................................................................................................................................................................. 16 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................AAGCAAGTTTTCACACATTGTCCATCT.......................................................................................................................................................... 27 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.....TATACTGTTTACCAT...................................................................................................................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................CATACATTGTCCGTCT.......................................................................................................................................................... 16 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
................................ATATGGGCAATGAGC........................................................................................................................................................................................................... 15 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
............................AAAAATATGGGCAATGAGCA.......................................................................................................................................................................................................... 20 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................AGCTCTTTAAGGTTGGT.................................................................................. 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:9710904-9711153 - dsi_4074 GTC------------------------------TTATATGACAAATGAT------ACTTTCTGGTTT------TTATACCCG-TTAC--------TCGTA-------GAGTGAAAGGGTATACTAGATTCGTTCAAAAGT--------ATGTAACAGGCAGA--------------------------------------AGGA------------CTATA--------------CAAA--GTATATATATTCTTTATCAGGATCTGGTCAAAAAGAAAAGTTT-------------TGT-------------------------------------------G--AAATTCCAAC------------------------------------------------CAAATAA-TAAATTCCTT-----TGGCTTTAATCCTTTAGGTTCTCCGTGCGCGTGGGCAACAACGCAGCCAAGGGAATTCATTTGCGTC-------------------
droSec2 scaffold_9523:240-438 + TT-------------------------------------------------------------------------ATACACG-TTAC--------TCGTA-------GAGTTAAAGGGTACACAAGATTCGTTGAAAAGT--------ATGTAACAGGCAGA--------------------------------------AGGAAGCA-TTTGCGACTATA--------------TAAA--GT---------CTTGATCAA---------------------------------------TCTTGTCTAGTCAATTTCTATCGGTAAACAAAAATATTTTGG-A--AACGCCCATT------------------------------------------------C-------------------TAACGATTCCTAAATCTTGGTTTCTCCG----CGTAGACAT----------------------TTAAGCA------------------G
dm3 chr2L:22885866-22886019 + TAT------------------------------TTTCAA-------------------------ATCTAA---TTCTACCTG-TTAC--------TCGTA-------GGGTAAAAGGGTAAACAAGATTCGTTTAA--GT--------ATGTAACAGAAGGC--------------------------------------A----------------------------------------GTATATATATTATACATTATACA----------------------------------------------------------AATAAGACAGAATGTTATAGTC--GAGTTCC--C------------------------------------------------CAAATAT-CAGATACCTG-----T-----------------T---------------------------------------------ACT-------------------
droEre2 scaffold_4845:16778934-16779130 + GGC------------------------------TTATATGACAAATGAAGT--GCACTTTCTGGTTTTACGTTTTA-GTGATTA-TCTGCTGATATCATT----------------AGATTAGCA----------------------------------------------------------ATTTTGTGG----------------------AATT---AAATTTATAATCAC-----------------------------------------------------------------AATTGT---------------------------------------------CCATC------------------------------------------------CAAATTA-CGAATTCCTT-----TGGTTTTAATCTTATAGGTTCTCCGTACGCGTGGGCAACAACCAAGCAAAGGGCATTCATTTGCGTC-------------------
droYak3 2R:7922254-7922460 + ATGATAA--------------------------------------------GCGCACTTTCTGGTTTTATATTTTA-ATGAATA-TCTGCTGATATTATT-------AGATGGAAGAA--TAATAG----------------TTAATTATTAA----GCA-----------------------ATATTCTGG----------------------AACT---CATTTTATAATCAC-----------------------------------------------------------------AATTGT---------------------------------------------CCATC------------------------------------------------CAAATTA-TAAATTCTTT-----TGGTTTTAACCCTTTAGGTTCTCCGTGCGCGTGGGCAACAACCAAGCAAAGGGGATTCATTTGCGTC-------------------
droEug1 scf7180000409722:9528-9736 - TTATATTGAA-AACAACAAATTC----------GTGA---------------------------TCT------TTATACCCG-TTAC--------TCGTA-------GAGTAAAAGGGTATACTAGATTTGTTGAATAGT--------ATGTAACAGATAGA--------------------------------------AGGAAGCGGTTTCTGACCCTA--------------TAAA--GTATTTATATTCTTGATCAGAATC-------------------AAAAGCGAAGTCGATT-------------------------------------------G--AGTATACAAGTATACAG---------------CACAAGTATG-CAGCACTCAT--------------------------------------CCTTAAGGTCC---------------------------------------------T-------------------
droBia1 scf7180000302292:44419-44663 - ATTGTAAAATGAAAACGTTGCCATTTCTGCAGCTTATCAGAAATGTGATAGGCGAGATTTTAGGTTTATTATGTTT-GTACA-TCTA---------TAGA-------AGTTGACATCA--TGTTCCTTTCGCTTGCAGAAA----------TAGTAACCTAA--------------------------------------GAGAAG--------------------------------------------------------------------------ATTC-------------TAA-----------------------------------------------------------------AGCTTT---AAGATTGTATA-----------------TAT-ACCTA-CATATTCCCT-------TATTTTATCCCCTAGGTTCTCCGTTCGCGTGGGCAACAATCAGGCCAAGGGCATTCACCTGCGCC-------------------
droTak1 scf7180000415190:22978-23179 + TTATACGACA-----------------------CCAT--------CGAT------TTTTTCCGGTTCCAATGATC---AAAC-TTAA--------CCGTA-------GAGTAAAATGGTATGTTGTATTCGTGTAAAAGT--------ATGTAACTGCGAGA--------------------------------------ATGGAT--------------------------------G--GAATTTATAATTTTTTTCGTAAG----------------------------------------------------------AACGGGA-----------------------------AAAAT---------------AACAAGTATT-TTTAACTCACT--CTTACGTAA-CGAGTTTGTC-----GTGATTTCATACAGTAGGTTTT----------------------------------------------------------------
droEle1 scf7180000489694:399390-399631 + AGC------------------------------TTATCAGGTATATGATATAAAAGCTTTCCGGTTCTAAATTTTA-ATGCA-TCTT--------TTATA-------AGGTGATAGCA--TATCCATATTGTTTGCAAACATTTAACTTTTTG----ACAAT--------------------------------------A------------------------------------GA--GCACATATGTACAT----------------------------------------------------------------------------------------------------------AC---------------CATTACTTAATT-GTATTATCCGCC-TAACTGATCGCCTTCTTTTTTATTTAATTTAATCCCTTAGGTTCTCCGTGCGCGTGGGCAACAACCAGGCCAAGGGCATCCATTTGCGTC-------------------
droRho1 scf7180000779872:294095-294378 + CGT------------------------------TTATCAGAAATATGAAACACG-ACTTTCGGGCTCTAAATGTCA-ATGAACT------------------------------------TACTCATTTTGATTACAGAAAT------ATTTGAGCAAGAGAAATGATAAAATTGGGTTAGTCAGTTTGTGGTATGAATAAGGG------------AT-------------------------GTACATATAATAGGC-------------------------------------------------------------------ATGATAATGTTTTGCAGCT--GAA-------------T---------------AATTACTAAATT-TAATTCTTCGCT-GTACTCAACTATTTTTGTTTTATTTAATTTAATCCTTTAGGTTCTCCGTGCGTGTCGGCAACAACCAGGCCAAGGGCATTCATTTGCGCC-------------------
droFic1 scf7180000453926:297815-297952 - ATTCTTGCAA-ACGAACTTGAT-----------CGAA---------------------------TTT------TTATATTCG-TTAC--------TCGTA-------GATTAAAAGAGTATACTGTATTTGTTGAA-AGG--------ATGTGACAGGTCGA--------------------------------------AGGGAGCA-CTTGCGAA------------------TAGAGTGAATGTATATTCTTAACCAGGAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------
droKik1 scf7180000302639:247463-247559 + AAC------------------------------TTT-------------------------------------GGATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTAACTAA-----------------------------------------CCA--------------------------------------------------------A-CTA-----------ACTACTCCACCTCCTTAGGTTCTCAGTGCGCGTGGGCAACAACCAGGCTAAGGGCATCCACCTGCGCC-------------------
droAna3 scaffold_12943:1032030-1032192 + TTA------------------------------------------------------------------------ATACCCG-GTAC--------TCGTA-------GAGTACAAGGGTATATTGTATTCGTCTGAATTT--------ATGTAACAGGGAGA--------------------------------------AGGAATC----TCAGACTCCA--------------TAAA--GTATATATATTCTTGAACGCG-TG---------------------------------------------------------GATCTCAGAGACAGATATAGTTATAAGATTT--T-------GAAGT---TTCA--ATTCCAAA--------------------------------------------------------------------------------------------------------------------------CTA--T
droBip1 scf7180000395981:29619-29768 + ATATATGTTA-----------------------ATTT---------------------------TTT------TTATATCCG-GTAC--------TCTTG-------GAGTAGAAAGGTATATTGTAGTAGTGTAAATGT--------ATGTAACATAGAGA--------------------------------------AGGAATCT-TCTCCAACTCCA--------------TAAA--GTATATATATTCTTGAT-------------------------------------------------------------------------------------------------------------------------AGTATAGGATTTGACGGTTT--------------------------------------TTTG--------------------------------------------------AAA-------------------
dp5 3:12872986-12873130 + TTT------------------------------TTAC---------------------------TTT------TTATAATCG-GTAC--------TCGTA-------AAGTACAAGGGTATATTATTTTCGTGCAAATGT--------ATGGTACAGGCACA--------------------------------------TGGATTCG-TG---GACTACT--------------TATA--GG---------CA---------TGCTGTCAAGCCAGAAAGCCC-------------TGT-----------------------------------------------------------------AGCATCCTCA--ATCGTATA--------------------------------------------------------------------------------------------------------------------------GTA---
droPer2 scaffold_2:8751165-8751309 - TTT------------------------------TTAC---------------------------TTT------TTATAATCG-GTAC--------TCGTA-------AAGTACAAGGGTATATTATTTTCGTGCAAATGT--------ATGGTACAGGCACA--------------------------------------TGGATTCG-TG---GACTACT--------------TATA--GG---------CA---------TGCTGTCATGCCAGAAAGCCC-------------TGT-----------------------------------------------------------------AGCATCCTCA--ATCGTATA--------------------------------------------------------------------------------------------------------------------------GTA---
droWil2 scf2_1100000004512:534557-534728 + ATACATT--------------------------TTCC---------------------------TTT------TTATACCAT-ACAC--------CCATA-------GGGTGAAATGGTATGTTAAAGTCGCCAAAATGT--------ATGTAACAGGCAGA--------------------------------------AAGAAGCT-TTTCCGACCCCA--------------TAAA--GTAT--AAATTCTTAATCAGCATC-------------------AACAGCCAAGACGATT---------------------------------------TGATACTAATATCCAGC------------------------------------------------AAAAT----------------------------------------------------------------------------ACCAAAATC-------------------
droVir3 scaffold_12875:4072342-4072486 - TTCTAGATGA-AATATTATA--------------TTT---------------------------TTT------TTATACACT-GAAC--------CTATTGAAAATGGGCAAAAAGGGTATTATGTATTTGTGCAAATGT--------ATGTAACAGGCAGA--------------------------------------AGAAAGCA-TCTTCGGCCTCA--------------AAAA--GTATATATATTCTTAATCAGCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------
droMoj3 scaffold_6482:1780574-1780750 - GTT---------------------------------------------------------------T------TTATACCCT-GAAC--------CCATTGAAAATGAGAAATCAGGGTATATTGGTTTGGTTGAAATGT--------ATGTAACAGGCAGA--------------------------------------AGGAGGCG-TGCCAGACCCCA--------------CAAA--ATATATATACTCTTGATCAGGGC----------------------------------------------------------GACG-------------------------------------------------------------AGCTGAACGTTT--------------------------------------CATTAA--------------------------------------ATTCCGTTACGTCAAAAAATAATAAAATATTT
droGri2 scaffold_15110:24437006-24437153 + ATCTTAATTA-AACATTTTGTTT----------TCTT---------------------------TTT------TTATACCCT-CAAT--------CCATTAAAAAT-GGGTCAAAGGGTATAATGGTTTTGTGATAATGT--------ATGTAACAGGCAGA--------------------------------------AGGAAACA-TCTCCGTCCCCA--------------TAAA--GTATATATATTCTTGATCAGGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GTC------------------------------TTATATGACAAATGAT------ACTTTCTGGTTT------TTATACCCG-TTAC--------TCGTA-------GAGTGAAAGGGTATACTAGATTCGTTCAAAAGT--------ATGTAACAGGCAGA--------------------------------------AGGA------------CTATA--------------CAAA--GTATATATATTCTTTATCAGGATCTGGTCAAAAAGAAAAGTTT-------------TGT-------------------------------------------G--AAATTCCAAC------------------------------------------------CAAATAA-TAAATTCCTT-----TGGCTTTAATCCTTTAGGTTCTCCGTGCGCGTGGGCAACAACGCAGCCAAGGGAATTCATTTGCGTC-------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................AAAAGT--------ATGTAACAGGCAGA--------------------------------------AGGA------------CT.......................................................................................................................................................................................................................................................................................................2616.00600200010100020000
......................................................................................................................................AAAAGT--------ATGTAACAGGCAGA--------------------------------------AGGA------------.........................................................................................................................................................................................................................................................................................................24203.6573000000000073000000
...............................................................................................................................TTCGTTCAAAAGT--------ATGTAACAGGCAGA--------------------------------------.........................................................................................................................................................................................................................................................................................................................2712.00200000020000000000
...............................................................................................TCGTA-------GAGTGAAAGGGTATACTAGA..................................................................................................................................................................................................................................................................................................................................................................................................2562.001200000001029000000
......................................................................................................................................AAAAGT--------ATGTAACAGGCAGA--------------------------------------AGGA------------CTT......................................................................................................................................................................................................................................................................................................2721.00200000000000020000
...........................................................................................................................................T--------ATGTAACAGGCAGA--------------------------------------AGGA------------CTATA--------------......................................................................................................................................................................................................................................................................................2421.00200000000000020000
...............................................................................................................................TTCGTTCAAAAGT--------ATGTAACAGGC..................................................................................................................................................................................................................................................................................................................................................................2411.00100000000010000000
...............................................................................................................................TTCGTTCAAAAGT--------ATGTAACAGGCA.................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
......................................................................................................................................AAAAGT--------ATGTAACAGGCAGA--------------------------------------AGGA------------CTA......................................................................................................................................................................................................................................................................................................2711.00100000000000010000
...........................................................................................................................................................................................................A------------CTATA--------------CAAA--GTATATATA.......................................................................................................................................................................................................................................................................1940.75300000300000000000
..................................................................................................TA-------GAGTGAAAGGGTATACTAGATT................................................................................................................................................................................................................................................................................................................................................................................................2460.67400000000004000000
.................................................................TT------TTATACCCG-TTAC--------TCGTA-------GAGTGA................................................................................................................................................................................................................................................................................................................................................................................................................2620.50100000001000000000
...........................................................................................................................................T--------ATGTAACAGGCAGA--------------------------------------AGGA------------CTATA--------------C.....................................................................................................................................................................................................................................................................................2520.50100100000000000000
.......................................................................................................................................................TAACAGGCAGA--------------------------------------AGGA------------CTATA--------------CA....................................................................................................................................................................................................................................................................................2220.50100000000001000000
.....................................................................................................................................................TGTAACAGGCAGA--------------------------------------AGGA------------CT.......................................................................................................................................................................................................................................................................................................1920.50100000000001000000
...........................................................................................................................................T--------ATGTAACAGGCAGA--------------------------------------AGGA------------CT.......................................................................................................................................................................................................................................................................................................2120.50100000000001000000
...................................................................................................................................TTCAAAAGT--------ATGTAACAGGCAGA--------------------------------------AG.......................................................................................................................................................................................................................................................................................................................2520.50100000000001000000
...........................................................................................................................................T--------ATGTAACAGGCAGA--------------------------------------AGGA------------CTATA--------------CA....................................................................................................................................................................................................................................................................................2620.50100000000001000000
......................................................................................................................................AAAAGT--------ATGTAACAGGCAGA--------------------------------------AGGA------------C........................................................................................................................................................................................................................................................................................................2540.50200010000100000000
...............................................................................................TCGTA-------GAGTGAAAGGGTATACTAG...................................................................................................................................................................................................................................................................................................................................................................................................2470.43300000000012000000
......................................................................................................................................AAAAGT--------ATGTAACAGGCAGA--------------------------------------AGGA------------CTTC.....................................................................................................................................................................................................................................................................................................2830.33100000000000010000
..................................................................................................TA-------GAGTGAAAGGGTATACTAGAT.................................................................................................................................................................................................................................................................................................................................................................................................2360.33200000000002000000
................................................................................CG-TTAC--------TCGTA-------GAGTGAAAGGGTA.........................................................................................................................................................................................................................................................................................................................................................................................................2440.25100000001000000000
.................................................................................G-TTAC--------TCGTA-------GAGTGAAAGGGTATA.......................................................................................................................................................................................................................................................................................................................................................................................................2550.20100000001000000000
...............................................................................................TCGTA-------GAGTGAAAGGGT..........................................................................................................................................................................................................................................................................................................................................................................................................17100.20200000000002000000
...........................................................................................................................................T--------ATGTAACAGGCAGA--------------------------------------AGGA------------.........................................................................................................................................................................................................................................................................................................19200.20400000000040000000
...............................................................................................TCGTA-------GAGTGAAAGGGTATACTAGATTC...............................................................................................................................................................................................................................................................................................................................................................................................2850.20100000000001000000
......................................................................................C--------TCGTA-------GAGTGAAAGGGTATACTAGA..................................................................................................................................................................................................................................................................................................................................................................................................2660.17100000000001000000
...................................................................................................................................................................................................................................................................................GAAAAGTTT-------------TGT-------------------------------------------G--AA.....................................................................................................................................................................1560.17100000001000000000
...............................................................................................TCGTA-------GAGTGAAAGGGTATACTAGAT.................................................................................................................................................................................................................................................................................................................................................................................................2660.17100000000001000000
.................................................................TT------TTATACCCG-TTAC--------TCGTA-------GAGT..................................................................................................................................................................................................................................................................................................................................................................................................................24200.15300000003000000000
....................................................................................TAC--------TCGTA-------GAGTGAAAGGGTATA.......................................................................................................................................................................................................................................................................................................................................................................................................2370.14100000000001000000
...................................................................................TTAC--------TCGTA-------GAGTGAAAGGGTATA.......................................................................................................................................................................................................................................................................................................................................................................................................2470.14100000000001000000
...............................................................................................TCGTA-------GAGTGAAAGGGTATACTA....................................................................................................................................................................................................................................................................................................................................................................................................2370.14100000000001000000
....................................................................................TAC--------TCGTA-------GAGTGAAAGGGTATACT.....................................................................................................................................................................................................................................................................................................................................................................................................2570.14100000010000000000
...............................................................................................TCGTA-------GAGTGAAAGGGTATAC......................................................................................................................................................................................................................................................................................................................................................................................................2170.14100000000001000000
.............................................................................................................GTGAAAGGGTATACTAGATTC...............................................................................................................................................................................................................................................................................................................................................................................................2180.13100000000001000000
...............................................................................................TCGTA-------GAGTGAAAGGGTA.........................................................................................................................................................................................................................................................................................................................................................................................................1880.13100000000001000000
................................................................TTT------TTATACCCG-TTAC--------TCGTA-------GAGT..................................................................................................................................................................................................................................................................................................................................................................................................................25200.10200000000200000000
..................................................................................................TA-------GAGTGAAAGGGTATA.......................................................................................................................................................................................................................................................................................................................................................................................................17100.10100000000001000000
...............................................................................................TCGTA-------GAGTGAAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................16100.10100000000001000000
......................................................................................................................................AAAAGT--------ATGTAACAGGC..................................................................................................................................................................................................................................................................................................................................................................17200.10200000000002000000
...............................................................................................TCGTA-------GAGTGAAAGG............................................................................................................................................................................................................................................................................................................................................................................................................15100.10100000000001000000
..............................................................................................................TGAAAGGGTATACTAGATTCG..............................................................................................................................................................................................................................................................................................................................................................................................21100.10100000000000001000
.................................................................................................GTA-------GAGTGAAAGGGTATACTAGATTA...............................................................................................................................................................................................................................................................................................................................................................................................26120.08100000001000000000
...............................................................................................TCGTA-------GAGTGAAAGGGTATACTAA...................................................................................................................................................................................................................................................................................................................................................................................................24140.07100000000000010000
...............................................................................................TCGTA-------GAGTGAAAGGGTATACTATT..................................................................................................................................................................................................................................................................................................................................................................................................25160.06100000000010000000
...............................................................................................................GAAAGGGTATACTAGA..................................................................................................................................................................................................................................................................................................................................................................................................16170.06100000000001000000
.....................................................................................................................................CAAAAGT--------ATGTAACAGGCAGA--------------------------------------AGGA------------A........................................................................................................................................................................................................................................................................................................26200.05100000000001000000
..........................................................................TATACCCG-TTAC--------TCGTA-------GAGT..................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000000010000000
.................................................................TT------TTATACCCG-TTAC--------TCGT..............................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000000001000000
.....................................................................................................................................................TGTAACAGGCAGA--------------------------------------AGGA------------.........................................................................................................................................................................................................................................................................................................17200.05100000000001000000
................................................................TTT------TTATACCCG-TTAC--------TCG...............................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000000001000000
droSec2
TT-------------------------------------------------------------------------ATACACG-TTAC--------TCGTA-------GAGTTAAAGGGTACACAAGATTCGTTGAAAAGT--------ATGTAACAGGCAGA--------------------------------------AGGAAGCA-TTTGCGACTATA--------------TAAA--GT---------CTTGATCAA---------------------------------------TCTTGTCTAGTCAATTTCTATCGGTAAACAAAAATATTTTGG-A--AACGCCCATT------------------------------------------------C-------------------TAACGATTCCTAAATCTTGGTTTCTCCG----CGTAGACAT----------------------TTAAGCA------------------GSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................TAC--------TCGTA-------GAGTTAAAGGGT..........................................................................................................................................................................................................................................................................................................................................................................................................20100.1010010
...............................................................................................................................TTCGTTGAAAAGT--------ATGTAACAGGCAGA--------------------------------------.........................................................................................................................................................................................................................................................................................................................27200.0510001
dm3
TAT------------------------------TTTCAA-------------------------ATCTAA---TTCTACCTG-TTAC--------TCGTA-------GGGTAAAAGGGTAAACAAGATTCGTTTAA--GT--------ATGTAACAGAAGGC--------------------------------------A----------------------------------------GTATATATATTATACATTATACA----------------------------------------------------------AATAAGACAGAATGTTATAGTC--GAGTTCC--C------------------------------------------------CAAATAT-CAGATACCTG-----T-----------------T---------------------------------------------ACT-------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................................................TGTTATAGTC--GAGTTCC--C------------------------------------------------CAAA.........................................................................................................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400010000000000000000000000000000000000000000000000000000
....................................................................................................................................TTAA--GT--------ATGTAACAGAAGGC--------------------------------------A----------------------------------------GTATA...........................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000
...........................................................................................................................................T--------ATGTAACAGAAGGC--------------------------------------A----------------------------------------GTATATATA.......................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000010100000
.......................................................................................................................................................TAACAGAAGGC--------------------------------------A----------------------------------------GTATATATATTA....................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
..............................................................................................................................................................................................................................................................................................................................................TGTTATAGTC--GAGTTCC--C------------------------------------------------CAA..........................................................................................................21132.9238000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003000000000000000000000000000000001000000000000000000000000000000000000000000000113004130000000000000000002000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................AATGTTATAGTC--GAGTTCC--C------------------------------------------------C............................................................................................................21182.67480000000000000000000000000000000000000000100000000000110000000000000000000000000000000000000000000000000000000000000300000000000000000000000000005000100000000000000000000000000000000000000000000000000000000000000000000031911041000000000000000000000000000000000000000000000600100000000000000000002000000210000000000001000101100000
............................................................................TACCTG-TTAC--------TCGTA-------GGGTAA................................................................................................................................................................................................................................................................................................................................................................................................................2122.5050000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...........................................................................................................................................................................................................................................................................................................................................GAATGTTATAGTC--GAGTTCC--C------------------------------------------------.............................................................................................................21192.16410000000000000000000000000000000000000010100000000100000001000000000000000000000000000000000000000000000000001000000000000000000000000000000000000001000000200000000000000000000000000000000000000000000000002000000000100011351103000000000000000000000000000000000000000000000100000000000000000000011000000240000000000000000312000000
.....................................................................................................................GTAAACAAGATTCGTTTAA--GT--------ATGTA........................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
....................................................................................................................................................................................................................................................................TACA----------------------------------------------------------AATAAGACAGAATGTTATAGTC--.......................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000100000000
.....................................................................................................................................TAA--GT--------ATGTAACAGAAGGC--------------------------------------A----------------------------------------GTATATA.........................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.....................................................................................................................................TAA--GT--------ATGTAACAGAAGGC--------------------------------------A----------------------------------------GTATA...........................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TTTAA--GT--------ATGTAACAGAAGGC--------------------------------------A----------------------------------------GTAT............................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TACA----------------------------------------------------------AATAAGACAGAATGTTATAGT..........................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TG-TTAC--------TCGTA-------GGGTAAAAGG............................................................................................................................................................................................................................................................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................A-------GGGTAAAAGGGTAAACAAGATTC...............................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............................................................................CTG-TTAC--------TCGTA-------GGGTAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................CAGAATGTTATAGTC--GAGTTC.................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................T--------ATGTAACAGAAGGC--------------------------------------A----------------------------------------GTATATATAT......................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................A----------------------------------------------------------AATAAGACAGAATGTTA..............................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................TATATTATACATTATACA----------------------------------------------------------AATAAGACA......................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TAAAAGGGTAAACAAGATTCGTTTAA--.......................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................TAAACAAGATTCGTTTAA--GT--------ATGTAACAGA...................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................TACCTG-TTAC--------TCGTA-------GGGTAAAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................TATACATTATACA----------------------------------------------------------AATAAGACAGAATG.................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TG-TTAC--------TCGTA-------GGGTAAAAGGGTAA........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................GT--------ATGTAACAGAAGGC--------------------------------------A----------------------------------------GTATA...........................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................TTCGTTTAA--GT--------ATGTAACAGAAGGC--------------------------------------A----------------------------------------G...............................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..............................................................................................................................................................................................................................................................................................................................................TGTTATAGTC--GAGTTCC--C------------------------------------------------CAAATAT-CA...................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TTTAA--GT--------ATGTAACAGAAGGC--------------------------------------A----------------------------------------GTATA...........................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...................................................................................................................................TTTAA--GT--------ATGTAACAGAAGGC--------------------------------------A----------------------------------------GTA.............................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................T--------ATGTAACAGAAGGC--------------------------------------A----------------------------------------GTATATATATTA....................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................GTAAAAGGGTAAACAAGAT.................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................TAA--GT--------ATGTAACAGAAGGC--------------------------------------A----------------------------------------G...............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TATAGTC--GAGTTCC--C------------------------------------------------CAAATAT-CA...................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.............................................................................................................................................................................................................................................................TACATTATACA----------------------------------------------------------AATAAGACAGAATGT................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TCTAA---TTCTACCTG-TTAC--------TCGTA-------GGG...................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................TCGTTTAA--GT--------ATGTAACAGAAGGC--------------------------------------A----------------------------------------G...............................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TGTTATAGTC--GAGTTCC--C------------------------------------------------CAAATAT-.....................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TATAGTC--GAGTTCC--C------------------------------------------------CAAATAT-CAGA.................................................................................................2611.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAATAT-CAGATACCTG-----T-----------------T---------------------------------------------ACT-------------------2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TAAAAGGGTAAACAAGATTCGTTTAA--G......................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................TTAA--GT--------ATGTAACAGAAGGC--------------------------------------A----------------------------------------GT..............................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................TTTAA--GT--------ATGTAACAGAAGGC--------------------------------------A----------------------------------------GT..............................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TTATAGTC--GAGTTCC--C------------------------------------------------CAAATAT-CAGA.................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TTCAA-------------------------ATCTAA---TTCTACCTG-TTAC--------TC................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TAACAGAAGGC--------------------------------------A----------------------------------------GTATATATA.......................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..................................................................................................TA-------GGGTAAAAGGGTAAACAAGATT................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................ACAGAATGTTATAGTC--GAGTT..................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................TAA--GT--------ATGTAACAGAAGGC--------------------------------------A----------------------------------------GTATATAT........................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................ATGTTATAGTC--GAGTTCC--C------------------------------------------------CA...........................................................................................................21130.92120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000001200010000000000000000011000000010000000000000000121000000
............................................................................................................................................................................................................................................................................................................................................AATGTTATAGTC--GAGTTCC--C------------------------------------------------.............................................................................................................20200.55110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000030000000000000002000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................AATGTTATAGTC--GAGTTCC--C------------------------------------------------CA...........................................................................................................22130.5470000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030200000000000000000000200000000000000000000000000000000000
....................................................................................TAC--------TCGTA-------GGGTAAAAGGGT..........................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................G-TTAC--------TCGTA-------GGGTAAAAGGGT..........................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................AC--------TCGTA-------GGGTAAAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................C--------TCGTA-------GGGTAAAAGGGT..........................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................G-TTAC--------TCGTA-------GGGTAAAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.............................................................................ACCTG-TTAC--------TCGTA-------GGGTAAA...............................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................................................TACCTG-TTAC--------TCGTA-------GGGTAAAAGG............................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TGTTATAGTC--GAGTTCC--C------------------------------------------------CA...........................................................................................................20130.4660000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000010000020000000000000000000000000000000000000000001000000000
.............................................................................................................................................................................................................................................................................................................................................ATGTTATAGTC--GAGTTCC--C------------------------------------------------CAA..........................................................................................................22130.4660000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400020000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................AGAATGTTATAGTC--GAGTTCC--..............................................................................................................................................................21200.4080000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000300000000000000000000011000000000000000000000000100000000
..........................................................................................................................................................................................................................................................................................................................................AGAATGTTATAGTC--GAGTTC.................................................................................................................................................................20200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000004300000000000000000000000000000000000000000000000000000000
.............................................................................ACCTG-TTAC--------TCGTA-------GGGTAAAAGT............................................................................................................................................................................................................................................................................................................................................................................................................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
............................................................................................................................................................................................................................................................................................................................................AATGTTATAGTC--GAGTTCC--C------------------------------------------------CAA..........................................................................................................23130.2330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000
...................................................................................TTAC--------TCGTA-------GGGTAAAAGGGA..........................................................................................................................................................................................................................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................GAATGTTATAGTC--GAGTTCC--C------------------------------------------------CAA..........................................................................................................24130.1520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..............................................................................................................................................................................................................................................................................................................................................TGTTATAGTC--GAGTTCC--C------------------------------------------------CAC..........................................................................................................21150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................GAATGTTATAGTC--GAGTTCC--C------------------------------------------------C............................................................................................................22170.1220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................AGAATGTTATAGTC--GAGTTCC--C------------------------------------------------.............................................................................................................22190.1120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TGTTATAGTC--GAGTTCC--C------------------------------------------------CAT..........................................................................................................21130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................GTTATAGTC--GAGTTCC--C------------------------------------------------CAA..........................................................................................................20130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................AATGTTATAGTC--GAGTTCC--C------------------------------------------------CAC..........................................................................................................23150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................ATGTTATAGTC--GAGTTCC--C------------------------------------------------C............................................................................................................20180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................AATGTTATAGTC--GAGTTCC--C------------------------------------------------CT...........................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................ATGTTATAGTC--GAGTTCC--C------------------------------------------------CC...........................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
droEre2
GGC------------------------------TTATATGACAAATGAAGT--GCACTTTCTGGTTTTACGTTTTA-GTGATTA-TCTGCTGATATCATT----------------AGATTAGCA----------------------------------------------------------ATTTTGTGG----------------------AATT---AAATTTATAATCAC-----------------------------------------------------------------AATTGT---------------------------------------------CCATC------------------------------------------------CAAATTA-CGAATTCCTT-----TGGTTTTAATCTTATAGGTTCTCCGTACGCGTGGGCAACAACCAAGCAAAGGGCATTCATTTGCGTC-------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTCTCCGTACGCGTGGGC..................................................2111.0010000010
droYak3
ATGATAA--------------------------------------------GCGCACTTTCTGGTTTTATATTTTA-ATGAATA-TCTGCTGATATTATT-------AGATGGAAGAA--TAATAG----------------TTAATTATTAA----GCA-----------------------ATATTCTGG----------------------AACT---CATTTTATAATCAC-----------------------------------------------------------------AATTGT---------------------------------------------CCATC------------------------------------------------CAAATTA-TAAATTCTTT-----TGGTTTTAACCCTTTAGGTTCTCCGTGCGCGTGGGCAACAACCAAGCAAAGGGGATTCATTTGCGTC-------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGCGTGGGCAACAACCA..........................................2011.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGCGTGGGCAACAACCAAGC.......................................2311.00100000010000
droEug1
TTATATTGAA-AACAACAAATTC----------GTGA---------------------------TCT------TTATACCCG-TTAC--------TCGTA-------GAGTAAAAGGGTATACTAGATTTGTTGAATAGT--------ATGTAACAGATAGA--------------------------------------AGGAAGCGGTTTCTGACCCTA--------------TAAA--GTATTTATATTCTTGATCAGAATC-------------------AAAAGCGAAGTCGATT-------------------------------------------G--AGTATACAAGTATACAG---------------CACAAGTATG-CAGCACTCAT--------------------------------------CCTTAAGGTCC---------------------------------------------T-------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ATTGTAAAATGAAAACGTTGCCATTTCTGCAGCTTATCAGAAATGTGATAGGCGAGATTTTAGGTTTATTATGTTT-GTACA-TCTA---------TAGA-------AGTTGACATCA--TGTTCCTTTCGCTTGCAGAAA----------TAGTAACCTAA--------------------------------------GAGAAG--------------------------------------------------------------------------ATTC-------------TAA-----------------------------------------------------------------AGCTTT---AAGATTGTATA-----------------TAT-ACCTA-CATATTCCCT-------TATTTTATCCCCTAGGTTCTCCGTTCGCGTGGGCAACAATCAGGCCAAGGGCATTCACCTGCGCC-------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TTATACGACA-----------------------CCAT--------CGAT------TTTTTCCGGTTCCAATGATC---AAAC-TTAA--------CCGTA-------GAGTAAAATGGTATGTTGTATTCGTGTAAAAGT--------ATGTAACTGCGAGA--------------------------------------ATGGAT--------------------------------G--GAATTTATAATTTTTTTCGTAAG----------------------------------------------------------AACGGGA-----------------------------AAAAT---------------AACAAGTATT-TTTAACTCACT--CTTACGTAA-CGAGTTTGTC-----GTGATTTCATACAGTAGGTTTT----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AGC------------------------------TTATCAGGTATATGATATAAAAGCTTTCCGGTTCTAAATTTTA-ATGCA-TCTT--------TTATA-------AGGTGATAGCA--TATCCATATTGTTTGCAAACATTTAACTTTTTG----ACAAT--------------------------------------A------------------------------------GA--GCACATATGTACAT----------------------------------------------------------------------------------------------------------AC---------------CATTACTTAATT-GTATTATCCGCC-TAACTGATCGCCTTCTTTTTTATTTAATTTAATCCCTTAGGTTCTCCGTGCGCGTGGGCAACAACCAGGCCAAGGGCATCCATTTGCGTC-------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CGT------------------------------TTATCAGAAATATGAAACACG-ACTTTCGGGCTCTAAATGTCA-ATGAACT------------------------------------TACTCATTTTGATTACAGAAAT------ATTTGAGCAAGAGAAATGATAAAATTGGGTTAGTCAGTTTGTGGTATGAATAAGGG------------AT-------------------------GTACATATAATAGGC-------------------------------------------------------------------ATGATAATGTTTTGCAGCT--GAA-------------T---------------AATTACTAAATT-TAATTCTTCGCT-GTACTCAACTATTTTTGTTTTATTTAATTTAATCCTTTAGGTTCTCCGTGCGTGTCGGCAACAACCAGGCCAAGGGCATTCATTTGCGCC-------------------SizeHit CountTotal NormTotal
No Reads
droFic1
ATTCTTGCAA-ACGAACTTGAT-----------CGAA---------------------------TTT------TTATATTCG-TTAC--------TCGTA-------GATTAAAAGAGTATACTGTATTTGTTGAA-AGG--------ATGTGACAGGTCGA--------------------------------------AGGGAGCA-CTTGCGAA------------------TAGAGTGAATGTATATTCTTAACCAGGAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AAC------------------------------TTT-------------------------------------GGATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTAACTAA-----------------------------------------CCA--------------------------------------------------------A-CTA-----------ACTACTCCACCTCCTTAGGTTCTCAGTGCGCGTGGGCAACAACCAGGCTAAGGGCATCCACCTGCGCC-------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TTA------------------------------------------------------------------------ATACCCG-GTAC--------TCGTA-------GAGTACAAGGGTATATTGTATTCGTCTGAATTT--------ATGTAACAGGGAGA--------------------------------------AGGAATC----TCAGACTCCA--------------TAAA--GTATATATATTCTTGAACGCG-TG---------------------------------------------------------GATCTCAGAGACAGATATAGTTATAAGATTT--T-------GAAGT---TTCA--ATTCCAAA--------------------------------------------------------------------------------------------------------------------------CTA--TSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................AC--------TCGTA-------GAGTACAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................18100.101100000
droBip1
ATATATGTTA-----------------------ATTT---------------------------TTT------TTATATCCG-GTAC--------TCTTG-------GAGTAGAAAGGTATATTGTAGTAGTGTAAATGT--------ATGTAACATAGAGA--------------------------------------AGGAATCT-TCTCCAACTCCA--------------TAAA--GTATATATATTCTTGAT-------------------------------------------------------------------------------------------------------------------------AGTATAGGATTTGACGGTTT--------------------------------------TTTG--------------------------------------------------AAA-------------------SizeHit CountTotal NormTotal
No Reads
dp5
TTT------------------------------TTAC---------------------------TTT------TTATAATCG-GTAC--------TCGTA-------AAGTACAAGGGTATATTATTTTCGTGCAAATGT--------ATGGTACAGGCACA--------------------------------------TGGATTCG-TG---GACTACT--------------TATA--GG---------CA---------TGCTGTCAAGCCAGAAAGCCC-------------TGT-----------------------------------------------------------------AGCATCCTCA--ATCGTATA--------------------------------------------------------------------------------------------------------------------------GTA---SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TTT------------------------------TTAC---------------------------TTT------TTATAATCG-GTAC--------TCGTA-------AAGTACAAGGGTATATTATTTTCGTGCAAATGT--------ATGGTACAGGCACA--------------------------------------TGGATTCG-TG---GACTACT--------------TATA--GG---------CA---------TGCTGTCATGCCAGAAAGCCC-------------TGT-----------------------------------------------------------------AGCATCCTCA--ATCGTATA--------------------------------------------------------------------------------------------------------------------------GTA---SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
ATACATT--------------------------TTCC---------------------------TTT------TTATACCAT-ACAC--------CCATA-------GGGTGAAATGGTATGTTAAAGTCGCCAAAATGT--------ATGTAACAGGCAGA--------------------------------------AAGAAGCT-TTTCCGACCCCA--------------TAAA--GTAT--AAATTCTTAATCAGCATC-------------------AACAGCCAAGACGATT---------------------------------------TGATACTAATATCCAGC------------------------------------------------AAAAT----------------------------------------------------------------------------ACCAAAATC-------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................TA-------GGGTGAAATGGTATGTTAAAGTC...............................................................................................................................................................................................................................................................................................................................................................................................2560.50301020
..................................................................................................TA-------GGGTGAAATGGTATGTTAAAGTCG..............................................................................................................................................................................................................................................................................................................................................................................................2650.40202000
..............................................................................................................TGAAATGGTATGTTAAAGTCGC.............................................................................................................................................................................................................................................................................................................................................................................................2270.14101000
.....................................................................................AC--------CCATA-------GGGTGAAATGGTATGTTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................2870.14101000
.....................................................................................AC--------CCATA-------GGGTGAAATGGTATGTTAAAGT................................................................................................................................................................................................................................................................................................................................................................................................2970.14101000
.....................................................................................AC--------CCATA-------GGGTGAAATGGTATGTTAA...................................................................................................................................................................................................................................................................................................................................................................................................2680.13101000
.....................................................................................................................GTATGTTAAAGTCGCCAAAAT.......................................................................................................................................................................................................................................................................................................................................................................................2190.11101000
.................................................................TT------TTATACCAT-ACAC--------CCATA-------GGGT..................................................................................................................................................................................................................................................................................................................................................................................................................24200.10200020
..................................TCC---------------------------TTT------TTATACCAT-ACAC--------CCATA-------GGG...................................................................................................................................................................................................................................................................................................................................................................................................................27200.10202000
.................................TTCC---------------------------TTT------TTATACCAT-ACAC--------CCA...............................................................................................................................................................................................................................................................................................................................................................................................................................23140.07101000
..........................................................................TATACCAT-ACAC--------CCATA-------GGG...................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
....................................C---------------------------TTT------TTATACCAT-ACAC--------CCATA-------GGG...................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
droVir3
TTCTAGATGA-AATATTATA--------------TTT---------------------------TTT------TTATACACT-GAAC--------CTATTGAAAATGGGCAAAAAGGGTATTATGTATTTGTGCAAATGT--------ATGTAACAGGCAGA--------------------------------------AGAAAGCA-TCTTCGGCCTCA--------------AAAA--GTATATATATTCTTAATCAGCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................TGCAAATGT--------ATGTAACAGGCAGA--------------------------------------.........................................................................................................................................................................................................................................................................................................................23200.204000000000000000000000000000300000000000100000000000000000000000
..........................................................................................................................................GT--------ATGTAACAGGCAGA--------------------------------------AGAAAGCA-TC..............................................................................................................................................................................................................................................................................................................26200.102000000000000000000000000000000010001000000000000000000000000000
...................................................................................................................................TGCAAATGT--------ATGTAACAGGCAGA--------------------------------------AGAA.....................................................................................................................................................................................................................................................................................................................27200.102000000000000000000000000001000000010000000000000000000000000000
.....................................................................................................................................................TGTAACAGGCAGA--------------------------------------AGAAAGCA-TCTT............................................................................................................................................................................................................................................................................................................25130.081000000010000000000000000000000000000000000000000000000000000000
..............................................................................................................AAAAAGGGTATTATGTATTTGTG............................................................................................................................................................................................................................................................................................................................................................................................23150.071001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................AAATGT--------ATGTAACAGGCAGA--------------------------------------A........................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000001000000000000000000000000000
...................................................................................................................................TGCAAATGT--------ATGTAACAGGCAGA--------------------------------------AG.......................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000000010000000000000000000000000
..........................................................................................................................................GT--------ATGTAACAGGCAGA--------------------------------------AGAAAGCA-T...............................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000010000000000000000000000000000
droMoj3
GTT---------------------------------------------------------------T------TTATACCCT-GAAC--------CCATTGAAAATGAGAAATCAGGGTATATTGGTTTGGTTGAAATGT--------ATGTAACAGGCAGA--------------------------------------AGGAGGCG-TGCCAGACCCCA--------------CAAA--ATATATATACTCTTGATCAGGGC----------------------------------------------------------GACG-------------------------------------------------------------AGCTGAACGTTT--------------------------------------CATTAA--------------------------------------ATTCCGTTACGTCAAAAAATAATAAAATATTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................TGAGAAATCAGGGTATATTGGTTTGG..............................................................................................................................................................................................................................................................................................................................................................................................2612.002200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAA--------------------------------------ATTCCGTTACGTCAAAAAATA...........2511.001100000
........................................................................................................................................................................................................................CCCCA--------------CAAA--ATATATATACTCTTGATC..............................................................................................................................................................................................................................................................2711.001100000
................................................................................................................................................................GA--------------------------------------AGGAGGCG-TGCCAGACCCCT--------------......................................................................................................................................................................................................................................................................................22200.051100000
................................................................................................CATTGAAAATGAGAAATCAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
droGri2
ATCTTAATTA-AACATTTTGTTT----------TCTT---------------------------TTT------TTATACCCT-CAAT--------CCATTAAAAAT-GGGTCAAAGGGTATAATGGTTTTGTGATAATGT--------ATGTAACAGGCAGA--------------------------------------AGGAAACA-TCTCCGTCCCCA--------------TAAA--GTATATATATTCTTGATCAGGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:12 AM