ID:

dsi_4063

Coordinate:

3l:8241026-8241175 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-3.6	-3.5	-3.4

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

TGTGCGTAGTAGGTTGTGCCAGTGTGTGTGCAATTTTTTCCGGCAGGCAAAAATCTCTCCATTTGCAACACTGAAAAATCGATAAAACTGCAGCAAGACTTTTTCGGTGTAGATTTCACTAGCCAAAAATAAAAAAAATAATAAAACAAGTAAAAATGTTTCTTAATCGTTTCCACCTTTCTCTTTTTCTCATCCAACAGCTTTTGTAACTAAAACTCCGTTTTGACATCACTTTCATCATAATCTGAAA ***************************************************************************..........(((((....((.....))..)))))............****************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M024 male body	O001 Testis	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs
......................................................................................................TTCGGTGTAGATTTCACTAGCC..............................................................................................................................	22	0	1	2.00	2	2	0	0	0	0	0	0
................................................................................................................................................................................................................................GACATCACTTTCATCATAATCTG...	23	0	1	1.00	1	0	1	0	0	0	0	0
.............................................................................ATCGATAAAACTGCAGCAAG.........................................................................................................................................................	20	0	1	1.00	1	0	0	0	1	0	0	0
.............................................................................................CAAGACTTTTTCGGTGTAGA.........................................................................................................................................	20	0	1	1.00	1	0	0	1	0	0	0	0
................................................................................................GACTTTATCGATGTAGAT........................................................................................................................................	18	2	7	0.43	3	0	0	0	0	3	0	0
..TGAGTAGTAGGTTGT.........................................................................................................................................................................................................................................	15	1	5	0.20	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................TCACTATCATCATCATCCGAAA	22	3	10	0.10	1	0	0	0	0	0	0	1
................................................................................................GACTTTATCGATGTAGA.........................................................................................................................................	17	2	16	0.06	1	0	0	0	0	1	0	0
..............................................................TTGCACCACTGAAAA.............................................................................................................................................................................	15	1	19	0.05	1	0	0	0	0	1	0	0

Anti-sense strand reads

ACACGCATCATCCAACACGGTCACACACACGTTAAAAAAGGCCGTCCGTTTTTAGAGAGGTAAACGTTGTGACTTTTTAGCTATTTTGACGTCGTTCTGAAAAAGCCACATCTAAAGTGATCGGTTTTTATTTTTTTTATTATTTTGTTCATTTTTACAAAGAATTAGCAAAGGTGGAAAGAGAAAAAGAGTAGGTTGTCGAAAACATTGATTTTGAGGCAAAACTGTAGTGAAAGTAGTATTAGACTTT ****************************************************************************************************************************..........(((((....((.....))..)))))............***************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	O001 Testis	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	M024 male body	SRR553486 Makindu_3 day-old ovaries
.................................................................................................................................................................................................................................AGTAGTGAGAGTAGTATTAGAGT..	23	3	1	4.00	4	4	0	0	0	0	0	0
...................................................................................................................................................................TTTAGCAAAGGTGGAAAGAGAAA................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0
........CATCCAACACGGTCACACACA.............................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0
................................................................................................................................................................................GCAAGAGAAAAAGAGTA.........................................................	17	1	2	0.50	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................AGGGAAAGTAGTATTAG.....	17	1	3	0.33	1	0	0	0	1	0	0	0
...............................................................................................................................................................AGGAATTTGCAATGGTGGAAA......................................................................	21	3	3	0.33	1	0	0	0	0	1	0	0
........................................................................................................................................................................................TAAAAAGTAGGTTGTCGAA...............................................	19	2	5	0.20	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................AGAACGAGAGTAGGTTCTCG.................................................	20	3	6	0.17	1	0	0	0	1	0	0	0
......................................................................................................................................................................................CAAAAAAAGTAGGTTGTCG.................................................	19	2	6	0.17	1	0	0	0	0	0	1	0
...............................................................................................................................................................AGGAATTTGCAATGGTGGAA.......................................................................	20	3	8	0.13	1	0	0	0	0	1	0	0
.............................................CCGTTTTTACAGAGCTAA...........................................................................................................................................................................................	18	2	12	0.08	1	0	0	0	0	0	1	0
.................................................................................................................................................................................AAAGGGAACAAGAGTTGGT......................................................	19	3	20	0.05	1	0	0	0	0	0	0	1

Generated: 04/24/2015 at 10:46 AM