ID:

dsi_4062

 Coordinate:

3l:5496344-5496493 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.4

Flybase annnotation

three_prime_UTR [3l_5495856_5496317_+]; exon [3l_5494820_5496317_+]; Antisense to CDS [3l_5496488_5498119_-]; Antisense to three_prime_UTR [3l_5496017_5496488_-]; Antisense to exon [3l_5496017_5498477_-]

No Repeatable elements found

Sense Strand Reads

########################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GTACAAAATATAGACATGAAATACAAATTTTGTATTTGCGTTAGTTGAATAATTGAAAATATACTCAACAGTAAAATAGTTTTACTATTTGATTGAGCTTATTCGTTATGTCTGATGATGGATAATGCAGTAATCTTATTCTGAAGCGGTTTGAGTTATTTATGCTTAATGAAATTGTTTTTTAATTTATAACTTTATAGTAGTCCGATCTTTTCCCTGGGTGTCAAGACCAGTGGAAAACACTCGGCAG
********************************************************************************************.....((((.(((((...((.((....((((.........))))...)).)))))))..))))*********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 M023
head
 SRR902008
ovaries
............................................................................................TTGAGCTTATTCGTTATGTCT......................................................................................................................................... 21 0 1 6.00 6 6 0 0 0 0 0 0 0
...................................TTGCGTTAGTTGAATAATTGA.................................................................................................................................................................................................. 21 0 1 5.00 5 1 3 1 0 0 0 0 0
.....................................................................................................TTCGTTATGTCTGATGATGGA................................................................................................................................ 21 0 1 3.00 3 0 1 0 2 0 0 0 0
............................TTTGTATTTGCGTTAGTTGAA......................................................................................................................................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0
.....................................................................................TATTTGATTGAGCTTATTCGT................................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0
........................................................................................................GTTATGTCTGATGATGGATAA............................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0
......................................................................................ATTTGATTGAGCTTATTCGTT............................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.....AAATATAGACATGAAATACA................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0
.................................ATTTGCGTTAGTTGAA......................................................................................................................................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0
.TACAAAATATAGACATGAAAT.................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................................ATCTTATTCTGAAGCGGTTTGAG............................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0
.....................................................................................................TTCGTTATGTCTGATGATGG................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.CACAAAATATAGACATGAAATGC.................................................................................................................................................................................................................................. 23 2 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................TTTACTATTTGATTGAGCTTATTCGT................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................CGATCTTTTCCCTGGGTGTCA........................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.TACAAAATATAGACATGAAATA................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0
.............................TTGTATTTGCGTTAGTTGAGTA....................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................................TGATTGAGCCTATTCGTTATGTCTGA....................................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................................................TTATGTCTGATGATGGATAAT............................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0
............................................................................................................TGTCTGATGATGGATAATGCA......................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................TTTAGTTGAATAATTGAAAAT.............................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 1
....................................................................................................ATTCGTTATGTCTGATGATGG................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0
...............................................................................................................CTGATGATGGATAATGCAGTA...................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..ACAAAATATAGACATGAAAT.................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0
.............................TTGTATTTGCGTTAGTTGAAT........................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................TATTTGATAGAGCTTATTGGTGA.............................................................................................................................................. 23 3 1 1.00 1 0 0 0 0 1 0 0 0
..........................ATTTTGTATTTGCGTTAGTTG........................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.......ATATAGACATGAAATACAAA............................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0
.....................................................................................TATTTGATAGAGCTTATTGGTG............................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 1 0 0 0
......AATATAGACATGAAATACAAAA.............................................................................................................................................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0
.................................................................................................................................GTAATCTTATTCTGAAGCGGT.................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................TATGTCTGACGATGGATAATG........................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0
................................................................................TTTACTATTTGATTGAGCTTA..................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................TGCAGTAATCTTATTCTGAAGCGGTT................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0
.................................................................................................................GATGATGGACAGTGCAGT....................................................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AGACCAGTGGGAAGCACT...... 18 2 7 0.14 1 0 0 0 0 1 0 0 0
....................................................................................................ATTCGTACTGTCTGATG..................................................................................................................................... 17 2 12 0.08 1 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................TTATAGTAGGGCGATTTTTT.................................... 20 3 13 0.08 1 0 0 0 0 0 1 0 0
....AAAATATAGACAGGA....................................................................................................................................................................................................................................... 15 1 19 0.05 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

##########################################################################################################################################################################################################################################################
CATGTTTTATATCTGTACTTTATGTTTAAAACATAAACGCAATCAACTTATTAACTTTTATATGAGTTGTCATTTTATCAAAATGATAAACTAACTCGAATAAGCAATACAGACTACTACCTATTACGTCATTAGAATAAGACTTCGCCAAACTCAATAAATACGAATTACTTTAACAAAAAATTAAATATTGAAATATCATCAGGCTAGAAAAGGGACCCACAGTTCTGGTCACCTTTTGTGAGCCGTC
***********************************************************************************************.....((((.(((((...((.((....((((.........))))...)).)))))))..))))******************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 SRR902008
ovaries
...............................................................................................TCGAATAAGCAATACAGACTA...................................................................................................................................... 21 0 1 2.00 2 1 0 1 0 0 0
.ATGTTTTATATCTGTACTTTA.................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
.............................................................ATGAGTTGTCATTTTATCAAA........................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0
.............................................................ATGAGTTGTCATGTTA............................................................................................................................................................................. 16 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................AGGGACCCACAGTTCTGGTTA................ 21 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................................................................AGGCACCTACAGTTCTGGTCC................ 21 3 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................................................................................GGCACCTACAGTTCTGGTC................. 19 2 1 1.00 1 0 0 0 1 0 0
...................................................................................................................................................................................................................................CTGGTCACCTTTTGTGAGCCG.. 21 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................AGGCTAGGGAAGGGACCCACA.......................... 21 2 1 1.00 1 1 0 0 0 0 0
....................................ACGCAATCAACTTATTAACTT................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................GAATAAGCAATACAGACT....................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0
.................................................................................................................................................................................................AAATATCATCAGGCTAGAAAA.................................... 21 0 1 1.00 1 0 0 0 0 0 1
.....................................................................................................................................................................................................................AGGCACCTACAGTTCTGG................... 18 2 4 0.50 2 0 0 0 2 0 0
...................................................................................................................................................................................................................GAAGGCACCTACAGTTCTGG................... 20 3 6 0.17 1 1 0 0 0 0 0
..................................................................................................................................................................AGGAATTACTTAAACAAAAAAAT................................................................. 23 3 6 0.17 1 0 0 1 0 0 0
................................................................................................................................................................................................................AGAAAAGGGACCCAT........................... 15 1 8 0.13 1 0 0 0 1 0 0
......................................................................................................................................................................................................GCATCAGGCTAGAAAT.................................... 16 2 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:5496294-5496543 + dsi_4062 GTACAAAATATAGACA----TGAAATACAAA--T-TTTGTATTTGCGTTAGTTGAATAA-TT--------------GAAAATATACTCAACA----------------------------------GTAAAATAGTTTTACTATTTG-ATTGAGCTTATTCGTTATGTCTGATGATGGATAATGCAGTA-------------ATCTTATTCTGAAGCGGTTTGAGTTATTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTAATGA-----------------AATTGTTTTTTAAT---------------------------------------------TTATAACT---T-----TATA---------------------------------------------------------------------------------------------------------------------------------------------------GT-----------AGTCCGA-TCTTTTCCCTGGGTGTCAAGACCAGTGGAAAACACTCGGCAG
droSec2 scaffold_2:5519835-5520087 + GTACAAAATATAGACA----TGAAATACAAA--T-TTTGTATTTGCGTTAGTTGAATAA-TG--------------GAAAATATACTCAACA----------------------------------GTAAAATAGTTTTACTATTTG-ATTGAGCTTATTCGTTATGTCTGATGATGGATAATGCAGTA-------------AGCTTATTCTGAAGCGGTTTGAGTTATTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTAATGA-----------------AATTGTTTTTTAAT---------------------------------------------TTATAACTTTTT-----TATA---------------------------------------------------------------------------------------------------------------------------------------------------GT-----------AGTCCGA-TCTTTTCCCTGGGTGTCAAGACCAATGGAAAACACTCGGCAG
dm3 chr3L:5583467-5583742 + GTACAAAATATAGACA----TGAAATACAAAAAT-TTTGTATTTGCGTTAGTTAAGTAA-TT--------------GAAAATATACTCAACA----------------------------------GTAAAATAGTTTTACTATTTG-ATTGAGCTTATTCGTTATGTCTGATAATAGATAACGCAGTA-------------ATCTTATTCTGAAGCTGTTTGGGCTATTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTA----------ATATTTTAA---------------------TTG--------------GTAGTGCTTAATGG-----------------TATTGGTTTTTAAA---------------------------------------------TTATAATT-TAT-----TATA---------------------------------------------------------------------------------------------------------------------------------------------------GT-----------GGTCCGA-TCTTTTCCCTGGGTGTCAAGACCAATGGAAAACAATCGGCAG
droEre2 scaffold_4784:8270149-8270425 + GTACAAAATATAAACA----TGAAATACAAG--T-TTTGTATTTGCGTTAGTGGAATAA-TA--------------GAAAATATACTCAACA----------------------------------GTAAAATAGTTTTACTATTTG-ATTCAGCTTATTTCTTATGTTCGATAGAAGATATTGCAGTA-------------ATCTTATTTTGGATCGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATATATTGAGCTATTTCTGTTAT----------ATACTTTAG---------------------TTG--------------CTAGCGCTTAGAGA-----------------GAT--------------------TTGTCC-----AATAATCAAA---TCTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG-----------CAATTT--ATTATTTTCTGGGTGTCAAGACCAATGGAAAGCAATCGGCAG
droYak3 3L:6148338-6148645 + GTACAAAATATAGATA----TGAAATACAAT--T-TTTAAATTTGCGTTAGTGGAATAA-TT--------------GAAAATATACTCAGCA----------------------------------GTAAAATAGTTTTACTATTTG-ATTGAGCTTATTCGTTATGTTTGATGAACGATAATGCAGTA-------------ATCGCATTCTGGAGCGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATATATTGAGTTATTTCTGTTAT----------ATACTTAAT---------------------TGG--------------CTAGTGCTTAATGA-----------------GAT--------------------TTGTCT-----AATAATCTAA---TGTATTGGCCATTTATAATT-TTTAATAGTATA---------------------------------------------------------------------------------------------------------------------------------------------------GTATAC-------AGTCCGT-TCTATTTCCTGGGTGTTAATACCAATGGAAAGCAATCGGCAG
droEug1 scf7180000409466:3348787-3349017 + GTACAAAATGCAGAAA--AATGAAATAAAAA--C-TACGTATATGCGTTAAAAGAATCT-TT--------------GAAATTAAACTCACAA----------------------------------TTGAAATAGTTTTACTTTTCG-ATTTAGTCT------------TGGTAATATAGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAGGATGATCTTTTTAATTTATTATTAATATTTGT--AAATGTCGGTTGTATT----------------ATA-----TTATTACTA-AATCTAAA-TATTTTCTCTGGGTGTCAGAACCAATGGAAAACATTTGGCAG
droBia1 scf7180000302193:3076737-3076926 + GTACAAAATACAGATA----TGAAAAACAAA----------------------------------------------------------------------------------------------------CTAGTTTTACAATTTT-ATTTTATGTGTTAT-----------AAAT-------------TTCATGAGTGCAAT----------------CT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA-------------------------------------------------TTA-----------------GCT--------------------ATGCCT-----AA------------------------------------------------------------------------------------------------------------------------------------------------CATTTATTTGCTTATCAGTAATACAAAAATAATTCGA------------CGATTATTC-TTCCTAGA-TGTTTTTCCTGGGTGTCAGGACCAGAGAAAAACAATTTGCGG
droTak1 scf7180000415868:262623-262899 + GTACAA--TACAGACA----TGAAATACAAA----------------------------------------------------------------------------------------------------CTAGTTTTACTATTTG-ATTTAATTTGTTCT-----------AATT--TAATACATTAGTTTGTGAGTGGAAT----------------CT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATCTATTTAGATCTTGCAATATCTAATTTCCTTAATATTGTATTACTTAATAATACTACGATAGTTGAGGCACTTTTTTTTAAAC--------------------------------------------AAATAATTCTTT-----CACAATTTT--C--CG-----------------------------------------------CTAGGCTTTCTCTGAGGG-------------------------------------------------------GATA---------------GCTACCCTTTCCTAGA-TGTTTTCCCTGGGTGTCAAAACCAATGGAAAACAACTGGCGG
droEle1 scf7180000491268:1063859-1064227 + GTACAAAATACAGAAT----TGAATTACAAATACTTAAGCCTATGCGTTATATGAGTCT-TT--------------GAAAATAT----GAGA----------------------------------GTAAAATAGTTTCACTATTTTGATTG-----------------------------------------------------------------------------------------------------------------GAGAGCTCAACAGTTATTGAAAGAGTGGGATTAAAAATCTATATTCAATAGTAGGATCATATAAAAAATCCACTTAATCAACATTAATTGCTTAAAGTTACTTATCAACTCGATTAATTGGTCCTTGGACCCATTGTAAAC---AAGTTATAATTATTTT----------TTGTTTTAT---------------------CTG--------------ATTACGTTTAATGG-----------------GAC--------------------ATTCCC-----ATTATTGTAT---TTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCGATTTC-----CTACAACCC-TCTCTATA-TGTTTTTCCTAGGTGTCAAAACCAATGGAAAACATTTAGCAG
droRho1 scf7180000779528:191240-191584 + TTTGAAAATATGGTTAGTAACGGA-----GAAATAAAAGTTTAA------------CAG-CGTTTTAAAAATCTTAAGACCTTAATAAACGAAAAAATGTATTCTGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATCAATATTAATGGCGTAAAAATACTTCTCATCTTGATTTATTGTTTTTTGC--------------------------TATTTCATGATCATAAATGTCTTAT---------------------CTG--------------AATACTTTTTATAC-----------------TAT--------------------TTTTTC-----ATTATCCTACAAATTTATTGATACCTTAAAGTTTTTT-----ACCAAGTCT--T--AG-----------------------------------------------CTAAGCCTCCTTTGAGGATGGT-------------------------------------------CTACTTAATCTTTCGATTTC-----CTACTACCC-TTTTTAAA-TGCTATTCCTAGGTGTCAAAACTAGCGGAAAACAATTGGCAG
droFic1 scf7180000453841:146160-146442 - GTACAAAATACAGACA----TGAAATACAAAAACTTAAGTTTATGCGTTTAATGAATC---G--------------GAGTATATACTCGAAA----------------------------------GTAAAATAGTTTTACTATTCT-ATTTAATTTGTTTG---------A-----------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTAACATTACTTTGAT-----------------TTATACGAACATTTTTTTTGAAAGATATGCTAATT----------------TAGAATG-TA------TACAATTTTCTC--AG-----------------------------------------------ATTTGCCTCCTTTGAGGAAGGT-------------------------------------------CCATTTATTATTGCGATTCC-----TTTTTACTG-CCTTCAAA----TCTCCCGAGGTGTCAAAACCAATGGAAAACATTTTGCTG
droKik1 scf7180000302266:252219-252534 + TACAAA--TACAA-----------------A------TGTCTTTGCCTTGAGTTAA-----T--------------GAAAAG--------------T---------AAATTTCAGTTTTATTCCCATTCAAATAGTTCAACTATTTC-GTTATAATTTCTCGCTGAACCTTGTAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------------------------------------------------------ATCAATATCAATTTGAT-----------------ATATATCTATATATATTTTT-----TTTGTTTATTAAGT-------------------------------AACTTCCTATTAGAAGAGGTGGAAGAGACTTAATTCTAATTAAAAGCAAATGAAAGGGCTAATTGTTTCTCCTCAGGATTAT-------------------------------------------CAAAGAATTTATATGATTTCATTTC-----------GAATCCA-TCTTTTCCCTGGGCCTTAGAACCAAAGGAAAGCACTTGGCTG
droAna3 scaffold_13082:3303646-3303733 - TATATT--TAATG----------------------------------------------------------------------A----T--------------------------------------------------------------------------------------------------------------------------------------------------ACATTTTTATAGTTTAATTTAT-TTGGTTTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCAACTCTGGGACACAATACTATCTCAAAACATTTGGCCG
droBip1 scf7180000395077:4865-5054 - ATTTTA---------------------------------TTTAATCGTTAATCTAATAAGTC--------------GAAAAGGCGCTTAAAA----------------------------------ATTAAATGGTTTATT--TTTG-AGTAAACC-----------------------AAACAAATTA-------------ATATTTGTAAGAATTCTTTTGTTTAATGTACGTACATTTTCATAACTTAAGTTAC-TTTTTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGGTTCTACTCTGGGACACAATACTAACTCAAAACATTTTGCCG
dp5 XR_group6:8055329-8055374 - CCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTATGCCCTTCGTGTGAGCAGCAGGGGAAAACAGCTGGCCG
droPer2 scaffold_27:401741-401786 + CCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTATGCCCTTCGTGTGAGGAGCAGGGGAAAACAGCTGGCCG
droWil2 scf2_1100000004511:3749588-3749664 - TTTTAAATT-TGTTTATTATTTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTATTCTTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-----AACTTCTACGCCTTAAGATCAAGGGAAAACATTTGGCTG
droVir3 scaffold_13047:8277197-8277260 + TTGAAAA-TATT----------------------------------------------------------------------------------------------------------------------------------ATTTT-GTGAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAAATTCTTTCTGTTAATACGAGTGGAAAGCATTTTGCGG
droMoj3 scaffold_6540:27914066-27914132 - TAATTT--TAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----TGGT---------------------------------------------------------------------------------------------------------------------------------------------------GT-----------TGCTTTA-TTTTATACCGTGCCGTTAATATAAGTGGAAAGCAGTTTGCGG
droGri2 scaffold_15074:1332641-1332712 - TTTTATTCTATGAATA----TTTAGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGAAA-ATTATTTTCTTGTAGTCAATATGAGTTCGAAACATTTGGCAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GTACAAAATATAGACA----TGAAATACAAA--T-TTTGTATTTGCGTTAGTTGAATAA-TT--------------GAAAATATACTCAACA----------------------------------GTAAAATAGTTTTACTATTTG-ATTGAGCTTATTCGTTATGTCTGATGATGGATAATGCAGTA-------------ATCTTATTCTGAAGCGGTTTGAGTTATTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTAATGA-----------------AATTGTTTTTTAAT---------------------------------------------TTATAACT---T-----TATA---------------------------------------------------------------------------------------------------------------------------------------------------GT-----------AGTCCGA-TCTTTTCCCTGGGTGTCAAGACCAGTGGAAAACACTCGGCAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................TTGAGCTTATTCGTTATGTCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2116.00600000000006000000
..........................................TTGCGTTAGTTGAATAA-TT--------------GA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2115.00500000031001000000
..............................................................................................................................................................TTCGTTATGTCTGATGATGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.00300200010000000000
...................................TTTGTATTTGCGTTAGTTGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000020000000000
.............................................................................................................................................TATTTG-ATTGAGCTTATTCGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000000002000000
.................................................................................................................................................................GTTATGTCTGATGATGGATAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000000002000000
..............................................................................................................................................ATTTG-ATTGAGCTTATTCGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
.....AAATATAGACA----TGAAATACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000001000000000
........................................ATTTGCGTTAGTTGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
.TACAAAATATAGACA----TGAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
..........................................................................................................................................................................................................ATCTTATTCTGAAGCGGTTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
..............................................................................................................................................................TTCGTTATGTCTGATGATGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
........................................................................................................................................TTTACTATTTG-ATTGAGCTTATTCGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGA-TCTTTTCCCTGGGTGTCA........................2111.00100000000001000000
.TACAAAATATAGACA----TGAAATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000001000000000
..................................................................................................................................................................TTATGTCTGATGATGGATAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
.....................................................................................................................................................................TGTCTGATGATGGATAATGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
.............................................................................................................................................................ATTCGTTATGTCTGATGATGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000001000000000
........................................................................................................................................................................CTGATGATGGATAATGCAGTA-------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
..ACAAAATATAGACA----TGAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000001000000000
....................................TTGTATTTGCGTTAGTTGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
..............................A--T-TTTGTATTTGCGTTAGTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
.......ATATAGACA----TGAAATACAAA--..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
......AATATAGACA----TGAAATACAAA--A-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000001000000000
..........................................................................................................................................................................................GTA-------------ATCTTATTCTGAAGCGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
........................................................................................................................................TTTACTATTTG-ATTGAGCTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
......................................................................................................................................................................................TGCAGTA-------------ATCTTATTCTGAAGCGGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000001000
droSec2
GTACAAAATATAGACA----TGAAATACAAA--T-TTTGTATTTGCGTTAGTTGAATAA-TG--------------GAAAATATACTCAACA----------------------------------GTAAAATAGTTTTACTATTTG-ATTGAGCTTATTCGTTATGTCTGATGATGGATAATGCAGTA-------------AGCTTATTCTGAAGCGGTTTGAGTTATTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTAATGA-----------------AATTGTTTTTTAAT---------------------------------------------TTATAACTTTTT-----TATA---------------------------------------------------------------------------------------------------------------------------------------------------GT-----------AGTCCGA-TCTTTTCCCTGGGTGTCAAGACCAATGGAAAACACTCGGCAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................AAA--T-TTTGTATTTGCGTTAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGA-TCTTTTCCCTGGGTGTC.........................2111.0010010
............................................................................................................................................CTATTTG-ATTGAGCTTATTCGTTATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
......................................................................................................................................................TGAGCTTATTCGTTATGTCTGATGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
dm3
GTACAAAATATAGACA----TGAAATACAAAAAT-TTTGTATTTGCGTTAGTTAAGTAA-TT--------------GAAAATATACTCAACA----------------------------------GTAAAATAGTTTTACTATTTG-ATTGAGCTTATTCGTTATGTCTGATAATAGATAACGCAGTA-------------ATCTTATTCTGAAGCTGTTTGGGCTATTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTA----------ATATTTTAA---------------------TTG--------------GTAGTGCTTAATGG-----------------TATTGGTTTTTAAA---------------------------------------------TTATAATT-TAT-----TATA---------------------------------------------------------------------------------------------------------------------------------------------------GT-----------GGTCCGA-TCTTTTCCCTGGGTGTCAAGACCAATGGAAAACAATCGGCAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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...........................................................................................................................................................................................................................TTTGGGCTATTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTA----------AT..............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........................................................TAA-TT--------------GAAAATATACTCAACA----------------------------------G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................AGCTTATTCGTTATGTCTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TCAACA----------------------------------GTAAAATAGTTTTACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................................................................................................TTTACTATTTG-ATTGAGCTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................TACAAAAAT-TTTGTATTTGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................ACTATTTG-ATTGAGCTTATTCGTTATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTGTCAAGACCAATGGAA............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
GTACAAAATATAGACA----TGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
......AATATAGACA----TGAAATACAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................GAGCTTATTCGTTATGTCTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TTACTATTTG-ATTGAGCTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................................T-TTTGTATTTGCGTTAGTTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................CTGTTTGGGCTATTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTG............................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-TAT-----TATA---------------------------------------------------------------------------------------------------------------------------------------------------GT-----------GGTCCGA-TCTT......................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................TACAAAAAT-TTTGTATTTGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TATAGACA----TGAAATACAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TGATAATAGATAACGCAGTA-------------ATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TCTTATTCTGAAGCTGTTTGGGCTATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................TATTCTGAAGCTGTTTGGGCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................TGAAGCTGTTTGGGCTATTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGT...........................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.TACAAAATATAGACA----TGAAATACAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................AACA----------------------------------GTAAAATAGTTTTACTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................TG-ATTGAGCTTATTCGTTATGTCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATGG-----------------TATTGGTTTTTT......................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.............................AAAAT-TTTGTATTTGCGTTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......ATATAGACA----TGAAATACAAAAAA-A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.2510000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGG-----------------TATTGGTTTTTAAA---------------------------------------------TGTA...................................................................................................................................................................................................................................2350.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
droEre2
GTACAAAATATAAACA----TGAAATACAAG--T-TTTGTATTTGCGTTAGTGGAATAA-TA--------------GAAAATATACTCAACA----------------------------------GTAAAATAGTTTTACTATTTG-ATTCAGCTTATTTCTTATGTTCGATAGAAGATATTGCAGTA-------------ATCTTATTTTGGATCGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATATATTGAGCTATTTCTGTTAT----------ATACTTTAG---------------------TTG--------------CTAGCGCTTAGAGA-----------------GAT--------------------TTGTCC-----AATAATCAAA---TCTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG-----------CAATTT--ATTATTTTCTGGGTGTCAAGACCAATGGAAAGCAATCGGCAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................TTCAGCTTATTTCTTATGTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
droYak3
GTACAAAATATAGATA----TGAAATACAAT--T-TTTAAATTTGCGTTAGTGGAATAA-TT--------------GAAAATATACTCAGCA----------------------------------GTAAAATAGTTTTACTATTTG-ATTGAGCTTATTCGTTATGTTTGATGAACGATAATGCAGTA-------------ATCGCATTCTGGAGCGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATATATTGAGTTATTTCTGTTAT----------ATACTTAAT---------------------TGG--------------CTAGTGCTTAATGA-----------------GAT--------------------TTGTCT-----AATAATCTAA---TGTATTGGCCATTTATAATT-TTTAATAGTATA---------------------------------------------------------------------------------------------------------------------------------------------------GTATAC-------AGTCCGT-TCTATTTCCTGGGTGTTAATACCAATGGAAAGCAATCGGCAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATA---------------------------------------------------------------------------------------------------------------------------------------------------GTATAC-------AGTCCGT-TCT.......................................2111.00100100000000
droEug1
GTACAAAATGCAGAAA--AATGAAATAAAAA--C-TACGTATATGCGTTAAAAGAATCT-TT--------------GAAATTAAACTCACAA----------------------------------TTGAAATAGTTTTACTTTTCG-ATTTAGTCT------------TGGTAATATAGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAGGATGATCTTTTTAATTTATTATTAATATTTGT--AAATGTCGGTTGTATT----------------ATA-----TTATTACTA-AATCTAAA-TATTTTCTCTGGGTGTCAGAACCAATGGAAAACATTTGGCAGSizeHit CountTotal NormTotal
No Reads
droBia1
GTACAAAATACAGATA----TGAAAAACAAA----------------------------------------------------------------------------------------------------CTAGTTTTACAATTTT-ATTTTATGTGTTAT-----------AAAT-------------TTCATGAGTGCAAT----------------CT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA-------------------------------------------------TTA-----------------GCT--------------------ATGCCT-----AA------------------------------------------------------------------------------------------------------------------------------------------------CATTTATTTGCTTATCAGTAATACAAAAATAATTCGA------------CGATTATTC-TTCCTAGA-TGTTTTTCCTGGGTGTCAGGACCAGAGAAAAACAATTTGCGGSizeHit CountTotal NormTotal
No Reads
droTak1
GTACAA--TACAGACA----TGAAATACAAA----------------------------------------------------------------------------------------------------CTAGTTTTACTATTTG-ATTTAATTTGTTCT-----------AATT--TAATACATTAGTTTGTGAGTGGAAT----------------CT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATCTATTTAGATCTTGCAATATCTAATTTCCTTAATATTGTATTACTTAATAATACTACGATAGTTGAGGCACTTTTTTTTAAAC--------------------------------------------AAATAATTCTTT-----CACAATTTT--C--CG-----------------------------------------------CTAGGCTTTCTCTGAGGG-------------------------------------------------------GATA---------------GCTACCCTTTCCTAGA-TGTTTTCCCTGGGTGTCAAAACCAATGGAAAACAACTGGCGGSizeHit CountTotal NormTotal
No Reads
droEle1
GTACAAAATACAGAAT----TGAATTACAAATACTTAAGCCTATGCGTTATATGAGTCT-TT--------------GAAAATAT----GAGA----------------------------------GTAAAATAGTTTCACTATTTTGATTG-----------------------------------------------------------------------------------------------------------------GAGAGCTCAACAGTTATTGAAAGAGTGGGATTAAAAATCTATATTCAATAGTAGGATCATATAAAAAATCCACTTAATCAACATTAATTGCTTAAAGTTACTTATCAACTCGATTAATTGGTCCTTGGACCCATTGTAAAC---AAGTTATAATTATTTT----------TTGTTTTAT---------------------CTG--------------ATTACGTTTAATGG-----------------GAC--------------------ATTCCC-----ATTATTGTAT---TTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCGATTTC-----CTACAACCC-TCTCTATA-TGTTTTTCCTAGGTGTCAAAACCAATGGAAAACATTTAGCAGSizeHit CountTotal NormTotal
No Reads
droRho1
TTTGAAAATATGGTTAGTAACGGA-----GAAATAAAAGTTTAA------------CAG-CGTTTTAAAAATCTTAAGACCTTAATAAACGAAAAAATGTATTCTGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATCAATATTAATGGCGTAAAAATACTTCTCATCTTGATTTATTGTTTTTTGC--------------------------TATTTCATGATCATAAATGTCTTAT---------------------CTG--------------AATACTTTTTATAC-----------------TAT--------------------TTTTTC-----ATTATCCTACAAATTTATTGATACCTTAAAGTTTTTT-----ACCAAGTCT--T--AG-----------------------------------------------CTAAGCCTCCTTTGAGGATGGT-------------------------------------------CTACTTAATCTTTCGATTTC-----CTACTACCC-TTTTTAAA-TGCTATTCCTAGGTGTCAAAACTAGCGGAAAACAATTGGCAGSizeHit CountTotal NormTotal
No Reads
droFic1
GTACAAAATACAGACA----TGAAATACAAAAACTTAAGTTTATGCGTTTAATGAATC---G--------------GAGTATATACTCGAAA----------------------------------GTAAAATAGTTTTACTATTCT-ATTTAATTTGTTTG---------A-----------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTAACATTACTTTGAT-----------------TTATACGAACATTTTTTTTGAAAGATATGCTAATT----------------TAGAATG-TA------TACAATTTTCTC--AG-----------------------------------------------ATTTGCCTCCTTTGAGGAAGGT-------------------------------------------CCATTTATTATTGCGATTCC-----TTTTTACTG-CCTTCAAA----TCTCCCGAGGTGTCAAAACCAATGGAAAACATTTTGCTGSizeHit CountTotal NormTotal
No Reads
droKik1
TACAAA--TACAA-----------------A------TGTCTTTGCCTTGAGTTAA-----T--------------GAAAAG--------------T---------AAATTTCAGTTTTATTCCCATTCAAATAGTTCAACTATTTC-GTTATAATTTCTCGCTGAACCTTGTAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------------------------------------------------------ATCAATATCAATTTGAT-----------------ATATATCTATATATATTTTT-----TTTGTTTATTAAGT-------------------------------AACTTCCTATTAGAAGAGGTGGAAGAGACTTAATTCTAATTAAAAGCAAATGAAAGGGCTAATTGTTTCTCCTCAGGATTAT-------------------------------------------CAAAGAATTTATATGATTTCATTTC-----------GAATCCA-TCTTTTCCCTGGGCCTTAGAACCAAAGGAAAGCACTTGGCTGSizeHit CountTotal NormTotal
No Reads
droAna3
TATATT--TAATG----------------------------------------------------------------------A----T--------------------------------------------------------------------------------------------------------------------------------------------------ACATTTTTATAGTTTAATTTAT-TTGGTTTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCAACTCTGGGACACAATACTATCTCAAAACATTTGGCCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
ATTTTA---------------------------------TTTAATCGTTAATCTAATAAGTC--------------GAAAAGGCGCTTAAAA----------------------------------ATTAAATGGTTTATT--TTTG-AGTAAACC-----------------------AAACAAATTA-------------ATATTTGTAAGAATTCTTTTGTTTAATGTACGTACATTTTCATAACTTAAGTTAC-TTTTTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGGTTCTACTCTGGGACACAATACTAACTCAAAACATTTTGCCGSizeHit CountTotal NormTotal
No Reads
dp5
CCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTATGCCCTTCGTGTGAGCAGCAGGGGAAAACAGCTGGCCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTATGCCCTTCGTGTGAGGAGCAGGGGAAAACAGCTGGCCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TTTTAAATT-TGTTTATTATTTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTATTCTTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-----AACTTCTACGCCTTAAGATCAAGGGAAAACATTTGGCTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TTGAAAA-TATT----------------------------------------------------------------------------------------------------------------------------------ATTTT-GTGAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAAATTCTTTCTGTTAATACGAGTGGAAAGCATTTTGCGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TAATTT--TAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----TGGT---------------------------------------------------------------------------------------------------------------------------------------------------GT-----------TGCTTTA-TTTTATACCGTGCCGTTAATATAAGTGGAAAGCAGTTTGCGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGTGGAAAGCAGTTTGC..2011.001000001
droGri2
TTTTATTCTATGAATA----TTTAGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGAAA-ATTATTTTCTTGTAGTCAATATGAGTTCGAAACATTTGGCAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 03:06 AM