ID:

dsi_4055

 Coordinate:

3r:4130961-4131110 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-3.9 -3.8 -2.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CGTCTACATGATTACCCACAAAAACAAGCCCACCTATGTAGCCATTTCAGGCGTGCACAACCATTTGTAGACGTGCACACATTGCTCTATTACCAATAAACTTACCATTATTCGTTTGAAAGCTAGTTTAATAGTTATACACAAGTGTTAAGACACTCCCAATATTATGCTTATTCTAATTACCTGCTTAATCCTTTTAGAACTGGCTGTCTTCGGCACTGGACAGCGGGGAAGAACCGTGCTGCTCTTC
*********************************************************.........(((((...(((.....))))))))..............................********************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
......................................................GCTAAACCATTCGTAGACG................................................................................................................................................................................. 19 3 15 6.27 94 64 0 30 0 0 0 0 0 0
..........................................................AACCATTCGTAGACG................................................................................................................................................................................. 15 1 4 2.75 11 7 0 4 0 0 0 0 0 0
..........................................................AACCATTTGTAGACGTGCACACATTGCTT................................................................................................................................................................... 29 1 1 2.00 2 0 2 0 0 0 0 0 0 0
...............................................................TTTGTAGACGTGCACACATTGCTT................................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0
............................................TTTCAGGCGTGCACAACCATTTGTAGA................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................ATTCTTTTAGAACTGGCTGTC....................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................................................................AACTTACCATTATTCGTTTGAA.................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................TCTTCGGCACTGGACAGCGGGGAAGAT.............. 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................CAACCATTTGTAGACGTGCACACAT........................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................TGTCTTCGGCACTGGACAGCGG..................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................GCTCAACCATTCGTAGACG................................................................................................................................................................................. 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................GAACCATTTGTAGACGAG............................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 0 0 1 0 0
......................................................GCTAAACCATTCGTAGACGT................................................................................................................................................................................ 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0
......................................................GCTAAACCATTTGTAGAC.................................................................................................................................................................................. 18 2 5 0.20 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................TAGAACTGGCAGGCTTC.................................... 17 2 11 0.09 1 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................TTTTGAACTGGCTGGCTT..................................... 18 2 17 0.06 1 0 0 0 0 0 0 0 1 0
.........................................................................................................CAATAATCGTTTGACAGCT.............................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................................................TCTGGGAAGAACCGT.......... 15 2 20 0.05 1 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

GCAGATGTACTAATGGGTGTTTTTGTTCGGGTGGATACATCGGTAAAGTCCGCACGTGTTGGTAAACATCTGCACGTGTGTAACGAGATAATGGTTATTTGAATGGTAATAAGCAAACTTTCGATCAAATTATCAATATGTGTTCACAATTCTGTGAGGGTTATAATACGAATAAGATTAATGGACGAATTAGGAAAATCTTGACCGACAGAAGCCGTGACCTGTCGCCCCTTCTTGGCACGACGAGAAG
**********************************************************************************************************************************.........(((((...(((.....))))))))..............................********************************************************* 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 SRR618934
dsim w501 ovaries
.................................................................................................................................................................TATAATACGAATAAGATTA...................................................................... 19 0 1 1.00 1 1 0
..............GGGTGTTTTTGTTCG............................................................................................................................................................................................................................. 15 0 3 0.67 2 0 2

Generated: 04/23/2015 at 08:39 PM