ID:

dsi_4051

 Coordinate:

3r:13452251-13452483 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.6 -19.5 -19.5

Flybase annnotation

five_prime_UTR [3r_13452484_13452694_+]; exon [3r_13452484_13452694_+]; five_prime_UTR [3r_13452177_13452250_+]; exon [3r_13452177_13452250_+]; intron [3r_13452251_13452483_+]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTAAGATGTATTCAAAGTTGTTGTCAAATTAGAGAACCCTTTTATTTTGAGTGTCTGGTTAAGTGTCATTTTGTATTCAAGGTCAAGGCTGCCAACTAGAAATGATCGTGGAATTAAAGCTCGTTTGAGTCGTTATCAATCGGTTTAAAATTGTGAAATCTGTAATTCGAAAAGAAAGATGATCATGATTTTTGTTTCCTGCAGCTAATTTTGGGTGAATTTCAGATCAATTTGTATATGGCGGCATTAACTTTATACGCACTTGCTTATTTGCATATTTCAGCTTGCATGTGTGCGTGAGCGCTTTAAAACAAAATCGTATCGCATATAGAT
****************************************************************************************......(((.(((((....((((((.((((((.((.((((.......)))).))))))((((((((((.((((....(((.....)))))))..)))))))))))).)))).)).....))))).))).******************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 M024
male body		 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR902008
ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
.................................................................................................AGAGATGATCGTGGAATAA......................................................................................................................................................................................................................... 19 2 1 11.00 11 11 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TTCAACGTCGAGGCTGCC................................................................................................................................................................................................................................................ 18 2 3 9.67 29 0 24 3 0 0 1 0 0 0 0 0 0 0 1
.................................................................................................AGAGATGATCGTGGAATTT......................................................................................................................................................................................................................... 19 2 2 7.00 14 14 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................AGAGATGATCGTGGATTTA......................................................................................................................................................................................................................... 19 2 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................AGAGATGATCGTGGAATTA......................................................................................................................................................................................................................... 19 1 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................GAGATGATCGTGGATTTAA........................................................................................................................................................................................................................ 19 2 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CTGCCAACTAGAAATGATCGT................................................................................................................................................................................................................................ 21 0 1 3.00 3 0 1 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................................AAGAGATGATCGTGGAATT.......................................................................................................................................................................................................................... 19 2 2 2.50 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................AAGAGATGATCGTGGAATTT......................................................................................................................................................................................................................... 20 3 20 2.30 46 46 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................AGAGATGATCGTGGAATTAA........................................................................................................................................................................................................................ 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................CAAGAGATGATCGTGGAATTA......................................................................................................................................................................................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
............................TTAGAGAACCCTTTTATTTTGAGTGTC...................................................................................................................................................................................................................................................................................... 27 0 1 2.00 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0
.................................................................................................TGAAATGATCGTGGAATTAAAGCT.................................................................................................................................................................................................................... 24 1 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0
.................................................................................................AGAGATGATCGTGGATTTAA........................................................................................................................................................................................................................ 20 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................GAGATGATCGTGGACTTAA........................................................................................................................................................................................................................ 19 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TGTTGTCAAATTAGAGAACC....................................................................................................................................................................................................................................................................................................... 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................AGAGATGATCGTGGAAATA......................................................................................................................................................................................................................... 19 2 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................CAAGAGATGATCGTGGAAT........................................................................................................................................................................................................................... 19 2 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TCAAGAGATGATCGTGGAATT.......................................................................................................................................................................................................................... 21 3 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................AGAGATGATCGTGGAATTTT........................................................................................................................................................................................................................ 20 3 8 1.13 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................CAAGAGATGATCGTGGATTT.......................................................................................................................................................................................................................... 20 3 8 1.13 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GAATTAAAGCTCGTTTGAGTC.......................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TGCAGCTAATTTTGGGTG.................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................TGTATGGCGGCATTAAGTTTAT............................................................................. 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................CAAGAGATGATCGTGGAATT.......................................................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TCCTGCAGCTAATTTTGGGTG.................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................TGTCAAATTAGAGAACCCT..................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................CATTTTGTATTCAAGGTCAAGGCTGC................................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................TTGAGTGTCTGGTTAAGTGTC.......................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................ATTTGTATATGGCGGCATTA.................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................GATCGTGGAATTAAAGCT.................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................GCTCGTTTGAGTCGTTATCAATCGGT............................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CAAGGCTGCCAACTAGAAATG..................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................CAAGGTCAAGGCTGCCAACT............................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGAAATCTGTAATTCGAAAAGAAAGA.......................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......GCATTCAAAGTTGTTGTCAAA................................................................................................................................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................AATTTCAGATCAATTTGTATA............................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................AACTAGAAATGATCGTGG.............................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................AGAAATGATCGTGGAATTGAG....................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................AATCTGTAATTCGAAAAGAAA............................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................AAGAGATGATCGTGGAATTA......................................................................................................................................................................................................................... 20 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GATGATCATGATTTTTGT.......................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTTTTGTTTCCTGCAGCTAAT............................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................AGAGATGATCGTGGAATTTA........................................................................................................................................................................................................................ 20 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................CGGCATTAACTTTATACGCAC....................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................TATTTTGAGTGTCTGGTTAAGT............................................................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................GTTATCAATCGGTTTAAAAT...................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................AGAGATGATCGTGGAAATAA........................................................................................................................................................................................................................ 20 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TTCAAGGTCAAGGCTGCC................................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................TTTGTATTCAAGGTCAAGGCC................................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................CAAGAGATGATCGTGGAGTTA......................................................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................CAAGAGATGATCGTGGAATTT......................................................................................................................................................................................................................... 21 3 4 0.75 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................AGAGATGATCGTGGATTTT......................................................................................................................................................................................................................... 19 3 20 0.55 11 11 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................AATCGGGTTAAAATT..................................................................................................................................................................................... 15 1 20 0.55 11 0 0 0 0 1 0 3 3 0 4 0 0 0 0
...........................................................................TTCAACGTCGAGGCTGCCCAC............................................................................................................................................................................................................................................. 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................AAGAGATGATCGTGGAATTAT........................................................................................................................................................................................................................ 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................AGAGATGATCGTGGAATTTAA....................................................................................................................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................AGAAATGATCGTGGAATTT......................................................................................................................................................................................................................... 19 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TTTGACACTGTGAAATCTGTA......................................................................................................................................................................... 21 3 4 0.50 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0
................................................................................................AAGAGATGATCGTGGATTTAA........................................................................................................................................................................................................................ 21 3 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................CAAGAGATGATCGTGGAATAA......................................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................AGAGATGATCGTGGATTTTA........................................................................................................................................................................................................................ 20 3 7 0.43 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................CAAGAGATGATCGTGGAAATAA........................................................................................................................................................................................................................ 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TAAAAGCTCGTTTGATTC.......................................................................................................................................................................................................... 18 2 9 0.33 3 0 0 0 0 0 0 0 0 0 3 0 0 0 0
....................................................................................................................................TTAGCAATCGGTTTAAA........................................................................................................................................................................................ 17 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................AAGAGATGATCGTGGACTTAA........................................................................................................................................................................................................................ 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................AAGAGATGATCGTGGACTTA......................................................................................................................................................................................................................... 20 3 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TTCAACGTCGAGGCTGCCAAG............................................................................................................................................................................................................................................. 21 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................AAGAGATGATCGTGGAATAAAA....................................................................................................................................................................................................................... 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......TATATGCAAAGCTGTTGTCAA.................................................................................................................................................................................................................................................................................................................. 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................TAAAAGCTCGTTTGA............................................................................................................................................................................................................. 15 1 13 0.23 3 0 0 0 0 0 0 2 0 0 1 0 0 0 0
...............................................................................................CAAGAGATGATCGTGGTAT........................................................................................................................................................................................................................... 19 3 10 0.20 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................AAGAGATGATCGTGGAATAA......................................................................................................................................................................................................................... 20 3 10 0.20 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................AGAGATGATCGTGGACTT.......................................................................................................................................................................................................................... 18 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................AAGAGATGATCGTGGAATTTA........................................................................................................................................................................................................................ 21 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................AGAGATGATCGTGGACATAA........................................................................................................................................................................................................................ 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TTCAACGTCGAGGCTGCCT............................................................................................................................................................................................................................................... 19 3 17 0.12 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TTCGGAAAGAAAGAT......................................................................................................................................................... 15 1 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................TATGTGCGTCAGCGATTTAA........................ 20 3 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................GAGATGATCGTGGACTAAA........................................................................................................................................................................................................................ 19 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AGTGTCCGGTTTAGGGTCA......................................................................................................................................................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...........................................................................TTCAACGTCGAGGCTGC................................................................................................................................................................................................................................................. 17 2 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................TTCAACGTCGAGGCTGCCC............................................................................................................................................................................................................................................... 19 3 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................GAGATGATCGTGGACTTAT........................................................................................................................................................................................................................ 19 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CTTCAACGTCGAGGCTGCC................................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................ATTGTGGAATCTGTA......................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................TGAAGTCTGTAATACG.................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........ATACAAGGTTGTCGTCAAA................................................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................TCGGGTTAAGTCTCAT........................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................GTCGAATTAGGGAACC....................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GATTCTACATAAGTTTCAACAACAGTTTAATCTCTTGGGAAAATAAAACTCACAGACCAATTCACAGTAAAACATAAGTTCCAGTTCCGACGGTTGATCTTTACTAGCACCTTAATTTCGAGCAAACTCAGCAATAGTTAGCCAAATTTTAACACTTTAGACATTAAGCTTTTCTTTCTACTAGTACTAAAAACAAAGGACGTCGATTAAAACCCACTTAAAGTCTAGTTAAACATATACCGCCGTAATTGAAATATGCGTGAACGAATAAACGTATAAAGTCGAACGTACACACGCACTCGCGAAATTTTGTTTTAGCATAGCGTATATCTA
********************************************************************************************************************......(((.(((((....((((((.((((((.((.((((.......)))).))))))((((((((((.((((....(((.....)))))))..)))))))))))).)))).)).....))))).))).**************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M024
male body		 M023
head
 O001
Testis
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
...............................................................................................................................TCAGCAATAGTTAGCCAAATT......................................................................................................................................................................................... 21 0 1 3.00 3 0 2 1 0 0 0 0 0 0 0
..............................................................................................................................CTCAGCAATAGTTAGCCAAAT.......................................................................................................................................................................................... 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................GCGAAATTTTGTTTTAGC.............. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.........................TTGAAGCTCTTGGGAAAATAA............................................................................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...TCTACATAAGTTTCAACAACA..................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............................................................................AGTTCCAGTTCCGACGGTTG............................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
........GTAAGTTTCAACAACAGTTT................................................................................................................................................................................................................................................................................................................. 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................TTGTCTTTCTACTAGTACTAA............................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0
............................................................................................................GCCCTAGTTTCGAGCAAACT............................................................................................................................................................................................................. 20 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................AAGTTCCAGTTCCGACGGT............................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................CCCACTTAAAGTCTAGTTAAAC................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................CCCTAGTTTCGAGCAAACT............................................................................................................................................................................................................. 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................GTCGAACGTACACACGCACTC................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................CGACGGTTGATCTTTACTAGC................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................CCTTAGTTTCGAGCAAA............................................................................................................................................................................................................... 17 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................AGTCGAACGTACACA....................................... 15 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................CCCTAGTTTCGAGCAA................................................................................................................................................................................................................ 16 2 20 0.40 8 8 0 0 0 0 0 0 0 0 0
................................................................................................................TAGTTTCGAGCAAACT............................................................................................................................................................................................................. 16 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................AGTTTCGAGCAAACT............................................................................................................................................................................................................. 15 1 11 0.27 3 3 0 0 0 0 0 0 0 0 0
.............................................................................................................CCTTATTTTCGAGCA................................................................................................................................................................................................................. 15 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................CCCTAGTTTCGAGCAAACTG............................................................................................................................................................................................................ 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................CCCTAGTTTCGAGCAAA............................................................................................................................................................................................................... 17 2 14 0.14 2 1 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................................................AAGTATGCAAGAACGAATAA.............................................................. 20 3 11 0.09 1 0 0 0 0 0 0 0 1 0 0
............................................................................................................GCCTTAGTTTCGAGCAA................................................................................................................................................................................................................ 17 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CTTAAAGTCTAGTGAACCGT................................................................................................. 20 3 18 0.06 1 0 0 0 0 0 0 0 0 1 0
............................................................................................................GCCCTAGTTTCGAGCAAAC.............................................................................................................................................................................................................. 19 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................GGCCTTAGTTTCGAGCAAA............................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................TCATTGCAATATGCGTTAA..................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:13452201-13452533 + dsi_4051 CTAAGATGTATTCAAAGTTGTTGTCAA-ATTAGAG--AACCC-TTTTATT--------------------------TTGAGTGTCTGGTTAAG------------TGTCATTTTGTATTCAAGGT-CAAGGCTG-CCAA-CTAGAAATGATCGTG--GAATTAAAGCT---CGTTTGAG-TCGTTATCAATCGGTTTAAAATTGTGAAATC----TGTAATTCGAAAAGAAAGATGATCATGATT----TTTGTTTCCTGCAGCTAATTTTG-GGTGAATTTCAGATCA-----ATTTGTATATG-GCGGCATT-A---ACTTTATACGC----ACTTGCTTATTTGCATATTTCAGCTTGCATGTGT------GCGTGAGCGCTTTAAAACAAAA------TCGTATCG----------CA----TAT--------AGAT
droSec2 scaffold_0:14316458-14316793 + CTAAGATGTATTCAAAGTTGTTGTCAA-ATTAAAG--AACCC-TTTAATT--------------------------TTGCGTGTCTGGTTAAG------------TGTCATTTTGTATTCAAGGT-CAAGACTG-CCAA-CTAGAAATGATCGTG--GAATTAAAGCT---CGTTTGAG-TCGTTATCAATCTGTTTTAAATTGTGAAATC----TGTAATTCGAACAAAAAGATGATCATGATT----TATGTTTCCTGCAGCTAATTTTG-GGTGAATTTTAGATCC-----ATTTATATGTT-GCGGCATA-A---ACTTTACACGC----ACTTGTTTATTTGCATAGTTCAGCTTGCATGTGT------GCGTGAGCGCTTTAAAACAAAA------TCGTATCG----------CATATA---------GTAGAT
dm3 chr3R:7647790-7648118 - CTAAGATGTATTCAAAGTGGTTGTCAA-ATTAAAG--AACCC-TTTTATT--------------------------TTGAGTATCTGGTTAAT------------TGTCATTTTGTATTCAAGGT-C----------AA-CTAGAAATGATCGTG--GAATTAAAGCT---CGTTTGGG-TCGTTATCAATCTGTTTAAAATTGTGAAATC----TGTAATTCGAACAGAAAGTTGATAATGATT----TTTGTTTCCTGCAGCTAATTTTG-GGTGAATTTCAGATCAAACATATTTATATGTT-GCGGCATT-A---ACTTTAGACGC----TCTTGTTTATTTGCATATTTCAGTTTGCATGTGT------GCGTGAGCGCTTTAAAACAAAA------TCGTGTCG----------CA----TAT--------AGAT
droEre2 scaffold_4770:13968286-13968630 + CTAAGATGTTTTCAAATATGTTGTCAA-ATAAAAG--AACTT-ATTTATT--------------------------ATGCGTGTCTGGTTAAG------------TGCCATTTTGTATACAAGCT-CAAGGCTG-CCAA-CTAGAAATGATCGTG--GAATCAAAGCT---CGTTTGAG-ACGATCTCAATCAATTTAAAAATGGGACATC----TGAAACTCCAACAGACAGCTGACAATG-TT----TTTGTTTCTTGCAGCTGATTTTG-GATGCATTTCAGTTTC-----ATTTATATTTT-GGGGCATC-A---ACGTTCCACGCA---ATTTGTTTATTTGCATATTGCCGTTTACATGTGT------GCGTGAGCGCTTTAAAACAAAA------TCGTATCG----------CATATACATATGTACATAGAT
droYak3 3R:16769497-16769834 + CTAAACTATTTTCAAAGTTATTATCAA-GTTAAAG--AACCA-ATATATT--------------------------TTGCGTGTCTGGTTACG------------AGTTACTTTGTATTCAAGGTTCAAGGCTG-TCAA-CTAGAGATGATCGTA--GAATTAAAGCT---CGTTTAAA-ACATTATCAATTG--TTTAAATTGGGAAATC----TGTAATTTTAAAGGACAGCT----TTG-TT----TTTGTTTTCTGCAGCTGATTTTT-AGTAAATTTCATTACC-----ATTTGTATTTT-GCGGCATC-AACAACGTTCCACGC----AATTGTTTATTTGCATATTTTGGTTTACATGTGT------GCGTGAGCGCTTTAAAACAAAA------TCCTATCG----------CATAT----ATGTATATAGAT
droEug1 scf7180000409797:1293563-1293918 - CTAGGATGATTTAAAAGTTACAGTAATTATTTAAG--GACC--TTTTCTA--------------------------TTGAATTTGTGTTCAATACTGAATTACAAC---GTTTAACGGTCAAGGT-CAAGGCTGGCCGA-TTAAAAAAGATCGTC--AAATTAA-GAT---CTTTCAAA-ATAACACCAATCAATTCAAAATGATTTAATC----CCTGATTTCAACGGACAGCTGGCAATG-TT----ATTGTTCCTTTTAGCGGCTTTTG-GGTTAAATTTAGTTCC-----ATTTAGAAACT-GCTGTC-ATA---TATTTCCACGT----ATTTGTTTATTTGCATATTTAAGCGCGCAAGTGT------GTGTAAGCGCTTTAA-ACAAAA------TCGTATCGCATATATA--CATAT----ATGTACATAGAT
droBia1 scf7180000302113:3523488-3523814 - CCAAGGTGTTTTGGAAGTTGTAGTAAATATTTTTAATAACTT---AAGTA--------------------------TTAAGAATCTTAACTAATATCTTAAAAAGT---GTTTGGGAGTCAAGGT-CACGGTGG-GCAC-TAAGTTAGGTCTGAA--AACTTAA----------------------GGAGTCCCTTTAAATATGGAAGATTCTTACATATTTTCAAAGAACATATAATAATA-TT----TGTACTAATTACAGCTGTTTTTA-TGTGAATTTCAGTTTC-----ATTAGGAATTGGGCTTTC-A-A---ACCCTCCACGT----ATTTGTTTATTTGCATATTTTTGTGTGCCTGTAT------GCGTGAGCGCCTTAA-ACAAAA------TCGTATCG----------CT----TAT--------AGAT
droTak1 scf7180000413265:11075-11400 - CTATGGTGTTTTGGAAGTTGCAGTAAATATTTAAG--ATAAC-CTTAATG--------------------------TAGCATATCTTCTTAAACACCTATTAATGT---GTTTAATGGTCAAGGT-CAAGACCA-TAA-----------ATTGTA--AAATTTTAGCT---CAT----A-AAGCTATCAGTCAAATTCTAATTAGAAATTC----TGTAAATCCAACAAACAGCTGGCATTG-TT----ATTATTTATTGCAGCTGTTCCTG-GGTGAATTTCCGTTTC-----ATTAAGGTTTTTG-TTTC-A-C---GCTTTCCACGT----ATTTGTTTATTAGCATATTTCCGTGTGCAAGTGT------GCGTGAGCGCCTTAA-ACAAAA------TCGTATCG----------CA----TAT--------AGAT
droEle1 scf7180000491080:2031544-2031888 + TTTAGGTTTC-TAAAAGATAAAGTAAATATATCATAGTACGAACAAAATATG------------------------GTTCGTATCTACTCGAATTTTTAGCAACGA---GATTTAGAGTCAAGGT-CAAGGCTG-TAAC-CCAAAAATGATCATG--AAACTTACTTT---CATTGGAAAACGTTATCAGTAGTTTTCAAATTAGAAAATC----TATATCAGCATCGAACAGGTAGCGGTG-TT----TTGGCTTATGGCAGCTGTTTTTA-GGTGAATTTCTGTGTA-----ATTTATAAT-T-TCAATT-G-T---ACCTTCTACGT----ATTTGTTTATTTGCATATTACAGTGTGCAAGTGT------GTGTGAGCGCTTCAA-GCAAAA------TCATAT---------TCGCT----TAT--------AGAT
droRho1 scf7180000767931:773-1117 + CTAAGGTGTTTT-AAAGTTATAGTAAATATTTTAGAGTACAA-----ATTTT--------G---------------T--TGTTTCTATTTGAATCTTTATTAATGT---GCTTTATTGACAAGGT-CCAGGCTG-GCAA-CTAAAAATGATCGTGTTAAATTTCAACTTATCGTTCGAATAAGTTATCATTAAATTTCTAAT---AATATT----TATTTCACAAGCTACCAGCTGGCAGTG-ATATGTATGGTTTATTGCAGCTGTTCTTA-GGTGAATTTCAATGTA-----ATTTGCAAT-T-TCAGTA-G-T---ACTTTCCACGT----ATTTGTTTATTTGCATATTACATTGTGCAAGTGT------GTGTGAGCGCCTTAA-ACAAAC------CCGTAT---------TCGCA----TAT--------AGAT
droFic1 scf7180000453488:169505-169847 + TTAAGGTGTTTTAAAAGTATTTGAATATATATTTA---------TT--TATACTTCCTATGCCTGCACTTTTCGTATC------------GTT------------TGT-AATTTAGAGTCAGGGT-TAATGTTG-GCAACTAAAAAATGATCGTT--GGATTTCCTTT---CGATCAAA-ACGTTATTAGTTTAGTTTAAAATATGAAAAC----AATATTTTTACAGATCAGCTGGCATTG-TT----ATTATTTATTGCAGCTGTTTTTACTGTGAATTCTCGTTCT-----TTCCCAGTTTG-GCAGTATA-T---CCCTTCCACGTAAATATTTGTTTATTTGCATAT-ATGGTATGCAAGTGT------GTGTAAGCGCTTTAA-ACAAAA------CCGTAT---------TCGCA----TAT--------AGAT
droKik1 scf7180000302706:663851-663937 + CTTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGT----ATTTGTTTATTTGCATATTATTGCCTGCATGTGTGTGTGAGTGTAAGCGCCCTAA-ACAAAT------TCTTATT-----------CT----TAT--------AGAC
droAna3 scaffold_12911:2304967-2305014 - CTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGT------GTGTAGGAAACTCAAAAC--GT------TCGCGTCG----------CA----TAT--------AGAC
droBip1 scf7180000396714:773993-774052 + TCTGGATATTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTATTGTGT------GTGTAAGAACTTGAA---AAGT------TCGCGTCG----------CA----TAT--------AGAC
dp5 2:25471460-25471529 + TTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACATA------CATATATGAGT------GTGTTAGTGCTTTAA-ACAAATTCAATTTCGCATCG----------CTTATACAT--------AGAT
droPer2 scaffold_6:799870-799945 + AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTACATACATA----------TTTGAGT------GTGTGAGTGCTTTAA-ATAAATTCAGTTTCGCATCG----------CTTAT----ATGTACATAGAT
droWil2 scf2_1100000004943:16523413-16523430 - TCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---------ACATA----TAT--------ATAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTAAGATGTATTCAAAGTTGTTGTCAA-ATTAGAG--AACCC-TTTTATT--------------------------TTGAGTGTCTGGTTAAG------------TGTCATTTTGTATTCAAGGT-CAAGGCTG-CCAA-CTAGAAATGATCGTG--GAATTAAAGCT---CGTTTGAG-TCGTTATCAATCGGTTTAAAATTGTGAAATC----TGTAATTCGAAAAGAAAGATGATCATGATT----TTTGTTTCCTGCAGCTAATTTTG-GGTGAATTTCAGATCA-----ATTTGTATATG-GCGGCATT-A---ACTTTATACGC----ACTTGCTTATTTGCATATTTCAGCTTGCATGTGT------GCGTGAGCGCTTTAAAACAAAA------TCGTATCG----------CA----TAT--------AGATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................CTG-CCAA-CTAGAAATGATCGT...............................................................................................................................................................................................................................................................................................2113.00312000000000000000
.............................TTAGAG--AACCC-TTTTATT--------------------------TTGAGTGTC....................................................................................................................................................................................................................................................................................................................................................................2712.00200000001010000000
..................TGTTGTCAA-ATTAGAG--AACC................................................................................................................................................................................................................................................................................................................................................................................................................2012.00220000000000000000
.............................................................................................................................................................GAATTAAAGCT---CGTTTGAG-TC...................................................................................................................................................................................................................................................................2111.00110000000000000000
..................................................................................................................................................................................................................................................................TGCAGCTAATTTTG-GGTG....................................................................................................................................................................1811.00110000000000000000
...............................................................................................................................................................................................................................................................TCCTGCAGCTAATTTTG-GGTG....................................................................................................................................................................2111.00110000000000000000
.....................TGTCAA-ATTAGAG--AACCC-T.............................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
............................................................................................................CATTTTGTATTCAAGGT-CAAGGCTG-C.................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
............................................................................TTGAGTGTCTGGTTAAG------------TGTC............................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
......................................................................................................................................................................................................................................................................................................ATTTGTATATG-GCGGCATT-A---..........................................................................................................................2011.00100000100000000000
....................................................................................................................................................GATCGTG--GAATTAAAGCT---..............................................................................................................................................................................................................................................................................1811.00100010000000000000
.....................................................................................................................................................................GCT---CGTTTGAG-TCGTTATCAATCGGT......................................................................................................................................................................................................................................................2611.00110000000000000000
..............................................................................................................................CAAGGCTG-CCAA-CTAGAAATG....................................................................................................................................................................................................................................................................................................2111.00100000100000000000
.......................................................................................................................CAAGGT-CAAGGCTG-CCAA-CT...........................................................................................................................................................................................................................................................................................................2011.00110000000000000000
............................................................................................................................................................................................................TGAAATC----TGTAATTCGAAAAGAAAGA...............................................................................................................................................................................................................2611.00100000001000000000
.....................................................................................................................................................................................................................................................................................AATTTCAGATCA-----ATTTGTATA..........................................................................................................................................2111.00100000100000000000
.........................................................................................................................................AA-CTAGAAATGATCGTG--G...........................................................................................................................................................................................................................................................................................1811.00100000010000000000
...............................................................................................................................................................................................................AATC----TGTAATTCGAAAAGAAA.................................................................................................................................................................................................................2111.00100000000010000000
........................................................................................................................................................................................................................................GATGATCATGATT----TTTGT...........................................................................................................................................................................................1811.00101000000000000000
...................................................................................................................................................................................................................................................TT----TTTGTTTCCTGCAGCTAAT.............................................................................................................................................................................2111.00100001000000000000
...................................................................................................................................................................................................................................................................................................................CGGCATT-A---ACTTTATACGC----AC.........................................................................................................2111.00100000100000000000
..............................................TATT--------------------------TTGAGTGTCTGGTTAAG------------T...............................................................................................................................................................................................................................................................................................................................................2211.00100000000000010000
......................................................................................................................................................................................GTTATCAATCGGTTTAAAAT...............................................................................................................................................................................................................................................2011.00100100000000000000
.....................................................................................................................TTCAAGGT-CAAGGCTG-CC................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
...............................................................................................................TTTGTATTCAAGGT-CAAGGCC....................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
..............................................................................................................................................AGAAATGATCGTG--GAATTT......................................................................................................................................................................................................................................................................................1920.50100000000000001000
droSec2
CTAAGATGTATTCAAAGTTGTTGTCAA-ATTAAAG--AACCC-TTTAATT--------------------------TTGCGTGTCTGGTTAAG------------TGTCATTTTGTATTCAAGGT-CAAGACTG-CCAA-CTAGAAATGATCGTG--GAATTAAAGCT---CGTTTGAG-TCGTTATCAATCTGTTTTAAATTGTGAAATC----TGTAATTCGAACAAAAAGATGATCATGATT----TATGTTTCCTGCAGCTAATTTTG-GGTGAATTTTAGATCC-----ATTTATATGTT-GCGGCATA-A---ACTTTACACGC----ACTTGTTTATTTGCATAGTTCAGCTTGCATGTGT------GCGTGAGCGCTTTAAAACAAAA------TCGTATCG----------CATATA---------GTAGATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................TTGCGTGTCTGGTTAAG------------TGTC............................................................................................................................................................................................................................................................................................................................................2111.0011000
...................................................................................................................................................................................................................................AAAAAGATGATCATGATT----TATGT...........................................................................................................................................................................................2311.0010100
.......................................................................................................................................................................................................................................................................................................................ATA-A---ACTTTACACGC----ACTTGT.....................................................................................................2111.0010100
.......................................................................................................................................................................................................................................................................................................................................................................TGCATGTGT------GCGTGAGCGCTT.......................................................2111.0011000
..............................................AATT--------------------------TTGCGTGTCTGGTTAAG------------TGTC............................................................................................................................................................................................................................................................................................................................................2511.0010100
............................................................................................................................................................................................................................................................................................GATCC-----ATTTATATGTT-GCGGC..................................................................................................................................2111.0011000
dm3
CTAAGATGTATTCAAAGTGGTTGTCAA-ATTAAAG--AACCC-TTTTATT--------------------------TTGAGTATCTGGTTAAT------------TGTCATTTTGTATTCAAGGT-C----------AA-CTAGAAATGATCGTG--GAATTAAAGCT---CGTTTGGG-TCGTTATCAATCTGTTTAAAATTGTGAAATC----TGTAATTCGAACAGAAAGTTGATAATGATT----TTTGTTTCCTGCAGCTAATTTTG-GGTGAATTTCAGATCAAACATATTTATATGTT-GCGGCATT-A---ACTTTAGACGC----TCTTGTTTATTTGCATATTTCAGTTTGCATGTGT------GCGTGAGCGCTTTAAAACAAAA------TCGTGTCG----------CA----TAT--------AGATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................TTGCATGTGT------GCGTGAGCGCT........................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...AGATGTATTCAAAGTGGTTGTC................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000
...................................................................................................................................................................................................................................................................................................................................................................AGTTTGCATGTGT------GCGTGA.............................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................GAATTAAAGCT---CGTTTGGG-.....................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................TCTGGTTAAT------------TGTCATTTTGTA....................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................AAAA------TCGTGTCG----------CA----TAT--------AGA.2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................TTTGCATGTGT------GCGTGAGCGC.........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........TTCAAAGTGGTTGTCAA-ATTAAAG--A...................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................CATATTTCAGTTTGCATGTGT------...................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...............................................................................................................TTTGTATTCAAGGT-C----------AA-CTAG.........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................CGTTATCAATCTGTTTAAAATTGTGAA.........................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................GAAATGATCGTG--GAATTA......................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
....GATGTATTCAAAGTGGTTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................CTGCAGCTAATTTTG-GGTGA...................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....ATGTATTCAAAGTGGTTGTC................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................AAAACAAAA------TCGTGTCG----------CA----TA.............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.........................................C-TTTTATT--------------------------TTGAGTATCTGGTT...............................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................GTAATTCGAACAGAAAGTTGATAATGAT.....................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................TTGGG-TCGTTATCAATCTG.......................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
......................................................................................................................................................TCGTG--GAATTAAAGCT---CGTTTGG.......................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........TTCAAAGTGGTTGTCAA-ATTAAAG--AA..................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................GTTGATAATGATT----TTTGTTTC........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........TATTCAAAGTGGTTGTCAA-AT...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................ATT-A---ACTTTAGACGC----TCTTGT.....................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................TTAAT------------TGTCATTTTGTATTT.................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................CCTGCAGCTAATTTTG-GGTGA...................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................GCATGTGT------GCGTGAGCGCTTT......................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
................................................TT--------------------------TTGAGTATCTGGTTAAT------------TG..............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................AGCTAATTTTG-GGTGAATTTC..............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TTTATATGTT-GCGGCATT-A---ACTTTAGACGC----...........................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................TCGTG--GAATTAAAGCT---CGTTTGGG-.....................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........TTCAAAGTGGTTGTCAA-ATTA.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................GTT-GCGGCATT-A---ACTTTAG...................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................ATTAAAGCT---CGTTTGGG-TC...................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................TCAGTTTGCATGTGT------GCGTGA.............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................TTTGCATGTGT------GCGTGAGCG..........................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
droEre2
CTAAGATGTTTTCAAATATGTTGTCAA-ATAAAAG--AACTT-ATTTATT--------------------------ATGCGTGTCTGGTTAAG------------TGCCATTTTGTATACAAGCT-CAAGGCTG-CCAA-CTAGAAATGATCGTG--GAATCAAAGCT---CGTTTGAG-ACGATCTCAATCAATTTAAAAATGGGACATC----TGAAACTCCAACAGACAGCTGACAATG-TT----TTTGTTTCTTGCAGCTGATTTTG-GATGCATTTCAGTTTC-----ATTTATATTTT-GGGGCATC-A---ACGTTCCACGCA---ATTTGTTTATTTGCATATTGCCGTTTACATGTGT------GCGTGAGCGCTTTAAAACAAAA------TCGTATCG----------CATATACATATGTACATAGATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................ATG-TT----TTTGTTTCTTGCAGCT................................................................................................................................................................................2111.0010000100
.................................................T--------------------------ATGCGTGTCTGGTTAAG------------TG..............................................................................................................................................................................................................................................................................................................................................2011.0010000100
droYak3
CTAAACTATTTTCAAAGTTATTATCAA-GTTAAAG--AACCA-ATATATT--------------------------TTGCGTGTCTGGTTACG------------AGTTACTTTGTATTCAAGGTTCAAGGCTG-TCAA-CTAGAGATGATCGTA--GAATTAAAGCT---CGTTTAAA-ACATTATCAATTG--TTTAAATTGGGAAATC----TGTAATTTTAAAGGACAGCT----TTG-TT----TTTGTTTTCTGCAGCTGATTTTT-AGTAAATTTCATTACC-----ATTTGTATTTT-GCGGCATC-AACAACGTTCCACGC----AATTGTTTATTTGCATATTTTGGTTTACATGTGT------GCGTGAGCGCTTTAAAACAAAA------TCCTATCG----------CATAT----ATGTATATAGATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................G-TCAA-CTAGAGATGATCGTA--GA..........................................................................................................................................................................................................................................................................................2211.00110000000000
....................................................................................................................................................................................................TTAAATTGGGAAATC----TGTA..............................................................................................................................................................................................................................1911.00100000010000
droEug1
CTAGGATGATTTAAAAGTTACAGTAATTATTTAAG--GACC--TTTTCTA--------------------------TTGAATTTGTGTTCAATACTGAATTACAAC---GTTTAACGGTCAAGGT-CAAGGCTGGCCGA-TTAAAAAAGATCGTC--AAATTAA-GAT---CTTTCAAA-ATAACACCAATCAATTCAAAATGATTTAATC----CCTGATTTCAACGGACAGCTGGCAATG-TT----ATTGTTCCTTTTAGCGGCTTTTG-GGTTAAATTTAGTTCC-----ATTTAGAAACT-GCTGTC-ATA---TATTTCCACGT----ATTTGTTTATTTGCATATTTAAGCGCGCAAGTGT------GTGTAAGCGCTTTAA-ACAAAA------TCGTATCGCATATATA--CATAT----ATGTACATAGATSizeHit CountTotal NormTotal
No Reads
droBia1
CCAAGGTGTTTTGGAAGTTGTAGTAAATATTTTTAATAACTT---AAGTA--------------------------TTAAGAATCTTAACTAATATCTTAAAAAGT---GTTTGGGAGTCAAGGT-CACGGTGG-GCAC-TAAGTTAGGTCTGAA--AACTTAA----------------------GGAGTCCCTTTAAATATGGAAGATTCTTACATATTTTCAAAGAACATATAATAATA-TT----TGTACTAATTACAGCTGTTTTTA-TGTGAATTTCAGTTTC-----ATTAGGAATTGGGCTTTC-A-A---ACCCTCCACGT----ATTTGTTTATTTGCATATTTTTGTGTGCCTGTAT------GCGTGAGCGCCTTAA-ACAAAA------TCGTATCG----------CT----TAT--------AGATSizeHit CountTotal NormTotal
No Reads
droTak1
CTATGGTGTTTTGGAAGTTGCAGTAAATATTTAAG--ATAAC-CTTAATG--------------------------TAGCATATCTTCTTAAACACCTATTAATGT---GTTTAATGGTCAAGGT-CAAGACCA-TAA-----------ATTGTA--AAATTTTAGCT---CAT----A-AAGCTATCAGTCAAATTCTAATTAGAAATTC----TGTAAATCCAACAAACAGCTGGCATTG-TT----ATTATTTATTGCAGCTGTTCCTG-GGTGAATTTCCGTTTC-----ATTAAGGTTTTTG-TTTC-A-C---GCTTTCCACGT----ATTTGTTTATTAGCATATTTCCGTGTGCAAGTGT------GCGTGAGCGCCTTAA-ACAAAA------TCGTATCG----------CA----TAT--------AGATSizeHit CountTotal NormTotal
No Reads
droEle1
TTTAGGTTTC-TAAAAGATAAAGTAAATATATCATAGTACGAACAAAATATG------------------------GTTCGTATCTACTCGAATTTTTAGCAACGA---GATTTAGAGTCAAGGT-CAAGGCTG-TAAC-CCAAAAATGATCATG--AAACTTACTTT---CATTGGAAAACGTTATCAGTAGTTTTCAAATTAGAAAATC----TATATCAGCATCGAACAGGTAGCGGTG-TT----TTGGCTTATGGCAGCTGTTTTTA-GGTGAATTTCTGTGTA-----ATTTATAAT-T-TCAATT-G-T---ACCTTCTACGT----ATTTGTTTATTTGCATATTACAGTGTGCAAGTGT------GTGTGAGCGCTTCAA-GCAAAA------TCATAT---------TCGCT----TAT--------AGATSizeHit CountTotal NormTotal
No Reads
droRho1
CTAAGGTGTTTT-AAAGTTATAGTAAATATTTTAGAGTACAA-----ATTTT--------G---------------T--TGTTTCTATTTGAATCTTTATTAATGT---GCTTTATTGACAAGGT-CCAGGCTG-GCAA-CTAAAAATGATCGTGTTAAATTTCAACTTATCGTTCGAATAAGTTATCATTAAATTTCTAAT---AATATT----TATTTCACAAGCTACCAGCTGGCAGTG-ATATGTATGGTTTATTGCAGCTGTTCTTA-GGTGAATTTCAATGTA-----ATTTGCAAT-T-TCAGTA-G-T---ACTTTCCACGT----ATTTGTTTATTTGCATATTACATTGTGCAAGTGT------GTGTGAGCGCCTTAA-ACAAAC------CCGTAT---------TCGCA----TAT--------AGATSizeHit CountTotal NormTotal
No Reads
droFic1
TTAAGGTGTTTTAAAAGTATTTGAATATATATTTA---------TT--TATACTTCCTATGCCTGCACTTTTCGTATC------------GTT------------TGT-AATTTAGAGTCAGGGT-TAATGTTG-GCAACTAAAAAATGATCGTT--GGATTTCCTTT---CGATCAAA-ACGTTATTAGTTTAGTTTAAAATATGAAAAC----AATATTTTTACAGATCAGCTGGCATTG-TT----ATTATTTATTGCAGCTGTTTTTACTGTGAATTCTCGTTCT-----TTCCCAGTTTG-GCAGTATA-T---CCCTTCCACGTAAATATTTGTTTATTTGCATAT-ATGGTATGCAAGTGT------GTGTAAGCGCTTTAA-ACAAAA------CCGTAT---------TCGCA----TAT--------AGATSizeHit CountTotal NormTotal
No Reads
droKik1
CTTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGT----ATTTGTTTATTTGCATATTATTGCCTGCATGTGTGTGTGAGTGTAAGCGCCCTAA-ACAAAT------TCTTATT-----------CT----TAT--------AGACSizeHit CountTotal NormTotal
No Reads
droAna3
CTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGT------GTGTAGGAAACTCAAAAC--GT------TCGCGTCG----------CA----TAT--------AGACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................TAGGAAACTCAAAAC--GT------G......................................1811.001000100
droBip1
TCTGGATATTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTATTGTGT------GTGTAAGAACTTGAA---AAGT------TCGCGTCG----------CA----TAT--------AGACSizeHit CountTotal NormTotal
No Reads
dp5
TTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACATA------CATATATGAGT------GTGTTAGTGCTTTAA-ACAAATTCAATTTCGCATCG----------CTTATACAT--------AGATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................CATA------CATATATGAGT------GTGTTAGTGC.........................................................2511.0010000100000
droPer2
AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTACATACATA----------TTTGAGT------GTGTGAGTGCTTTAA-ATAAATTCAGTTTCGCATCG----------CTTAT----ATGTACATAGATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................................................ATA----------TTTGAGT------GTGTGAGTGCT........................................................2111.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................AA-ATAAATTCAGTTTCGCATCG----------CTTA.................2611.001010000
droWil2
TCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---------ACATA----TAT--------ATATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads

Generated: 05/18/2015 at 12:16 PM