ID:

dsi_4044

Coordinate:

3l:16143815-16143964 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-27.9	-27.7	-27.2

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CAACAAGCTTGCTGTGTTAAAGCAGTTAAAGCCGTCTTTGTGCGAAGTTGGTAAAGTCAGTTAGTTGGCAGTTTTGAAATGTAATATTCAATTGTCATTCCATTAATTCCATCCGATCGGCAACTTGATACTACAGCTTAGCAGCTTCATTCAATTGTCTTTCGCACGAAATGCATTTTCCCTTGTTTTTCCAGTGCTGCAAAGGGCTGCTCTGGTTTCTGTGTTGTTGTCTGGTATTTGTTGTTCGCCT ************************************************..((((.(((((...(((.((((((((..((((.(((.((((((((..((..............))..))))).)))))).))))..)))).)))))))...))))).)))).((((((((.(((........))).))))..))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M023 head	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
....................................................................................TATGCAATTGTCATTCGATGAAT...............................................................................................................................................	23	3	1	2.00	2	2	0	0	0
..............................................................................................................ATCCGATCGGCAACTTGA..........................................................................................................................	18	0	1	1.00	1	0	1	0	0
...................................CTTTGTGCGAGATTGGTAA....................................................................................................................................................................................................	19	2	1	1.00	1	1	0	0	0
.................................GACTTTGTGCGAGATTGGTA.....................................................................................................................................................................................................	20	3	6	0.67	4	4	0	0	0
...............................................................................................................TACGATCGGCAACTTG...........................................................................................................................	16	1	3	0.33	1	0	0	1	0
...........................................CAAGTTGGTAAAGTCA...............................................................................................................................................................................................	16	1	4	0.25	1	0	0	0	1
..................................................................................................................................................................................................TGCTGGAAAGGGCTGCGCCGG...................................	21	3	6	0.17	1	1	0	0	0
...................................CTATGTCCGAAGATGGTAA....................................................................................................................................................................................................	19	3	20	0.10	2	0	0	2	0
.................................................................TGGCTGTTTGGAAATGTAATT....................................................................................................................................................................	21	3	10	0.10	1	1	0	0	0
.........................................GCCAAGTTGGTAAAGGCA...............................................................................................................................................................................................	18	2	10	0.10	1	0	0	0	1
......................................................................................................................................................................................................................................CGGGTATGTGTTGTTGGCCT	20	3	11	0.09	1	0	0	1	0

Anti-sense strand reads

GTTGTTCGAACGACACAATTTCGTCAATTTCGGCAGAAACACGCTTCAACCATTTCAGTCAATCAACCGTCAAAACTTTACATTATAAGTTAACAGTAAGGTAATTAAGGTAGGCTAGCCGTTGAACTATGATGTCGAATCGTCGAAGTAAGTTAACAGAAAGCGTGCTTTACGTAAAAGGGAACAAAAAGGTCACGACGTTTCCCGACGAGACCAAAGACACAACAACAGACCATAAACAACAAGCGGA ************************************************..((((.(((((...(((.((((((((..((((.(((.((((((((..((..............))..))))).)))))).))))..)))).)))))))...))))).)))).((((((((.(((........))).))))..))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	O002 Head	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries
.............................................................................................................................................................GGAAAGCGTGCTTTA..............................................................................	15	1	13	2.08	27	22	0	5	0	0	0
.................................................................................................................................................................AGCGTGCTTTACGTAAAA.......................................................................	18	0	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................TAAGGGAAAGCGTGCTTTA..............................................................................	19	2	6	0.67	4	2	0	2	0	0	0
.......................................................................................................ATTATGGTAGGCTAGCGGT................................................................................................................................	19	2	2	0.50	1	0	0	0	1	0	0
......................................................................................................................................TCGAATTGTAGAAGTAAGTTAT..............................................................................................	22	3	3	0.33	1	0	0	0	0	1	0
.........................................................................................................................................................TAAGGGAAAGCGTGCTTTAT.............................................................................	20	3	10	0.20	2	1	0	1	0	0	0
......................................................................................................................................................................................AAAAAAAAGGTCAGGATGTTT...............................................	21	3	15	0.07	1	0	0	0	0	0	1
..........................................................................................................................................................................................................TCCCGTCGAGACTTAAGAC.............................	19	3	19	0.05	1	0	0	0	0	1	0
.........................................................................................................................................................................................AAAAAGTTCCCGACGTTT...............................................	18	2	20	0.05	1	0	0	1	0	0	0
..................................................................................................................................................................................GGGGATCAGAAAGGTCACG.....................................................	19	3	20	0.05	1	0	0	1	0	0	0

Generated: 04/24/2015 at 02:26 AM