ID:

dsi_4035

 Coordinate:

3l:17021061-17021210 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.2 -9.2 -9.1

Flybase annnotation

five_prime_UTR [3l_17019764_17022636_-]; exon [3l_17019543_17022636_-]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
AGTGTATTCCGTACTGCGTACTTCAGTTGCGATCTGCGATTCGCGACAACGTTCGTATTCGATTTCCTACAACCACACAGCGCATCGTCTCTGTACATATACCTAGCTATGTTTCTTAAAGAGTGTAATTTAGCAATTATATAATTTTAATCACTTTGTACATTTGTCTGCATGCAACTGTTTCCTGCATCAAAAGTGTCATAAGAAATAGAAATACACAGACTTCCACTCGTCCTCCTACGGAGTGGGT
************************************************************************.........(((.......((((((.............((...((((((.((((((((....))))))))..))))))..))..))))))......))).****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 M053
female body
 M024
male body		 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
..................................................................................................................................................TTAATCACTTTGTACATTTGTCTGCA.............................................................................. 26 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TTCCTGCATCGAAAGTGTCATAAGA............................................ 25 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TAATCACTTTGTACATTTGTCTGCA.............................................................................. 25 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0
........................................................................CCACACAGCGCATCGTCTCTG............................................................................................................................................................. 21 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0
......................................................................AACCACACAGCGCATCGTCTCT.............................................................................................................................................................. 22 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TGTTTCCTGCATCGAAAGTGTCATAAGA............................................ 28 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................GCGCATCGTCTCTGTACA......................................................................................................................................................... 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AAAGAGTGTAATTTAGCAATTATA............................................................................................................. 24 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
...................................................................TACAACCACACAGCGCATCGTCTCTG............................................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.................GTACTTCAGTTGCGATCTGCGATTCGC.............................................................................................................................................................................................................. 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
...........................................................................CACAGCGCATCGTCTCTG............................................................................................................................................................. 18 0 1 2.00 2 0 1 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................TCATAAGAAATAGAAATACACAGACT.......................... 26 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TTTAATCACTTTGTACATTTGTCTGCA.............................................................................. 27 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
................................................................TCCTACAACCACACAGCGCATCGTCTC............................................................................................................................................................... 27 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0
.......................CAGTTGCGATCTGCGATTCGC.............................................................................................................................................................................................................. 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATACACAGACTTCCACTC................... 18 0 1 2.00 2 0 1 0 0 0 0 1 0 0 0 0 0
................................................................TCCTACAACCACACAGCGCATCGTC................................................................................................................................................................. 25 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
....................................................................................................................................................................................TTTCCTGCATCGAAAGTGTCATAAGA............................................ 26 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................GTCTGCATGCAACTGTTTCCT................................................................ 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
...GTATTCCGTACTGCGTACTT................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................TATATCTAGCAATGTTTCTTAAAGAGTG............................................................................................................................. 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TACATTTGTCTGCATGCAACTGT..................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................TGCATGCAACTGTTTCCTGCATC........................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................TTAATCACTTTGTACATTTGTCTG................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................ACCACACAGCGCATCGTCTCTGT............................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................TAAAGAGTGTAATTTAGCAATTATA............................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................ACAGCGCATCGTCTCTGT............................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................TCGAAAGTGTCATAAGAAATATA...................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................AACTGTTTCCTGCATCGAAAGTGTCA................................................. 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................ATTTTAATCACTTTGTACATTTGTCTGCA.............................................................................. 29 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................TGTTTCCTGCATCGAAAGTGTCATAAGAA........................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CTATGTTTCTTAAAGAGTGTA........................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................CATTTGTCTGCATGCAACTGTTTCCTGC.............................................................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AAAAGTGTCATAAGGAATA........................................ 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................AACCACACAGCGCATCGTCTC............................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................TACACAGACTTCCACTCCTCCTCCTA.......... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCTACAACCACACAGCGCATCGTC................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.....ATTCCGTACTGCGTACTTCAGT............................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................AACCACACAGCGCATCGTCTCTGTACA......................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TCACTTTGTACATTTGTCTGCA.............................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................TTTTAATCACTTTGTACATTTGTCTGCA.............................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TACCTAGCTATGTTTCTTAAAGAGTGT............................................................................................................................ 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AATACACAGACTTCCACTCGTCCTC............. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................TCCTGCATCGAAAGTGTCATAAGAAATAGA...................................... 30 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................ATCACTTTGTACATTTGTCTGCATGCA.......................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................AGTGTAATTTAGCAAT................................................................................................................. 16 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................TCTTAAAGAGTGTAATTTAGCAATT................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................TCTGCGATTCGCGACAACGTT..................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................TATCTAGCTATGTTTCTTAAAGA................................................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TGTCTGCATGCAACTGT..................................................................... 17 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................TAGCTATGTTTCTTAAAGAGTGTAATT........................................................................................................................ 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................TTCCTGCATCAAAAGTGTCATAAGAT........................................... 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TAAGAAATAGAAATACACAGACTT......................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ACAGACTTCCACTCGTCCT.............. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................TATCTAGCTATGTTTCTTAAAGAGTGTAA.......................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............TGCGTACTTCAGTTGCGATCTGCGTTT................................................................................................................................................................................................................. 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................GTCTGCATGCAACTGTTTCCTGC.............................................................. 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................TACACAGACTTCCACTCCTCCTCCTACGGAA..... 31 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................GTACTTCAGTTGCGATCTGC..................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................AAAGTGTCATAAGAGATGGAAA.................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TGCAACTGTTTCCTGCATCGAAAGTG.................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................ACAACCACACAGCGCATCGTC................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TCCTGCATCGAAAGTGTCATAAGA............................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CTCTGTACATATATCTAGCTA............................................................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CTTTGTACATTTGTCT................................................................................. 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TTTAATCACTTTGTACATTTATCTGCA.............................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TGTCATAAGAAATAGAAATACACAGA............................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
...............GCGTACTTCAGTTGCGATCTGCGA................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................TTTCCTACAACCACACAGCGCATC.................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TGTACATTTGTCTGCATGCAACTGT..................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................TAGCTATGTTTCTTAAAGAGT.............................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................TACACAGACTTCCACTCGTCCTCC............ 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................TGTTTCCTGCATCGAAAGTGTCATA............................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................TACAACCACACAGCGCATCGTCTCTGTA........................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................CCTACAACCACACAGCGCATCGTCTC............................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TGTCATAAGAAATAGAAATACACAGAC........................... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................TAAGAAATAGAAATACACAGA............................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........TACTGCGTACTTCAGTTGCGA.......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TGTCTGCATGCAACTGTTTCCTGC.............................................................. 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................GACAACGTTCGTATTCGA............................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................ATTTGTCTGCATGCAACTGT..................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TTTGTCTGCATGCAACTGTTTCCTGC.............................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................CTGCGATTCGCGACAACGTTCG................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................TTTCCTACAACCACACAGCGCATCGTC................................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................TTTTAATCACTTTGTACATTTGTCTGC............................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TGCCTGCATCGAAAGTGTCATAAGA............................................ 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................AGAAATACACAGACTTCCACTCGTCC............... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................TGCATCGAAAGTGTCATAAGAAATA........................................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTTCCTGCATCAAAAGTGTCATAAGA............................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................AATCACTTTGTACATTTGTCTGCA.............................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................GCGGTCTGCGCTTCCCGACA.......................................................................................................................................................................................................... 20 3 3 0.67 2 0 0 0 0 0 0 0 0 0 0 2 0
................................................................................................................................................................................................................TAGAAATACACAGAC........................... 15 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................TGTACATTTGTCTGCATG............................................................................ 18 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
......TTCCGTACGGCGTAC..................................................................................................................................................................................................................................... 15 1 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................CTTTGAACATTTTTCTGGATGCAA......................................................................... 24 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................AACGTTCGTATTTGA............................................................................................................................................................................................ 15 1 16 0.13 2 2 0 0 0 0 0 0 0 0 0 0 0
.......GCGGTACTGCGTACTT................................................................................................................................................................................................................................... 16 2 20 0.10 2 0 0 0 0 0 0 0 0 1 0 1 0
...........................................................................................TGTACATATACCGAG................................................................................................................................................ 15 1 15 0.07 1 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................ATCGTCTCTTTACTTA....................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................TTTCGCAATTATATAATCGT...................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
.................GTACTTCAGTTTGGATC........................................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

TCACATAAGGCATGACGCATGAAGTCAACGCTAGACGCTAAGCGCTGTTGCAAGCATAAGCTAAAGGATGTTGGTGTGTCGCGTAGCAGAGACATGTATATGGATCGATACAAAGAATTTCTCACATTAAATCGTTAATATATTAAAATTAGTGAAACATGTAAACAGACGTACGTTGACAAAGGACGTAGTTTTCACAGTATTCTTTATCTTTATGTGTCTGAAGGTGAGCAGGAGGATGCCTCACCCA
******************************************************************************.........(((.......((((((.............((...((((((.((((((((....))))))))..))))))..))..))))))......))).************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
................................................................AGGATGTTGGGGTTTCACGT...................................................................................................................................................................... 20 3 7 8.57 60 54 0 0 5 0 1 0 0
................................................................AGGATGTTGGGGTTTCACG....................................................................................................................................................................... 19 3 16 6.31 101 91 0 0 8 0 2 0 0
...........................................................GCTAAAGGATGTTGGTGTGTC.......................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
................................................................AGGATGTTGGTGTTTCACGT...................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................ACAAAGAATTTCTCACATTAA........................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................TAAGCGCTGTCGCAAGCATAA............................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................ATTCTTTATCTTTATGTGTCT............................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................ACGCTAAGCGCTGTTGCAAGC................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0
......................................................................................................................................................................................AGGACGTAGCTTTCACAGTAT............................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................CAGGATGTTGGGGTTTCGCG....................................................................................................................................................................... 20 3 3 0.33 1 1 0 0 0 0 0 0 0
................................................................AGGATGTTGGGGTGTCAC........................................................................................................................................................................ 18 2 3 0.33 1 0 0 1 0 0 0 0 0
..............................................................TCAGGATGTTGGGGTGTCGC........................................................................................................................................................................ 20 3 5 0.20 1 0 1 0 0 0 0 0 0
................................................................AGGATGTTGGGGTGCC.......................................................................................................................................................................... 16 2 19 0.16 3 0 0 3 0 0 0 0 0
.................................................................GGAGGTTGGTGAGTCGCG....................................................................................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 0 0 1
.................................................................GGATGTTGGGGTGTC.......................................................................................................................................................................... 15 1 10 0.10 1 0 0 1 0 0 0 0 0
...............................................................CAGGATGTTGGGGTGTCAC........................................................................................................................................................................ 19 3 12 0.08 1 0 0 1 0 0 0 0 0
......................................TAAGGCCTGTTGCGAGCAT................................................................................................................................................................................................. 19 3 15 0.07 1 0 0 0 0 0 0 1 0
...................................................................ATGTTGGTATGACGC........................................................................................................................................................................ 15 2 20 0.05 1 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:17021011-17021260 - dsi_4035 AGTGTATTCCGT-----------ACTGCGTACTTCAGT--------TGCGATCTGCGATTCGCGACAACGTTCGTATTCGATT-TCCTACA---AC-----------CACA--------------------CAGCGCATCGT---------------CTCTGTACATATAC----------------CTAGCTATGTTTCTTAA-------AGAGTGTAAT------TTAGCAATTATATAATTTTAATCACT----------TTGTACATTTGTCTGCAT---------------GCAACTGTT---TCCTGCATCAA-AAGTGTC---ATAAGAAATAGAAA---TACACAGACTTCCA-----CTCGTCCTC--------------------------C---TACGGAGTGG----GT
droSec2 scaffold_0:9477161-9477410 - AGTGTATACCGT-----------ACTGCGTACTTCAGT--------TGCGATCTGCGATTCGCGACAACGTTCGTATTCGATT-TCCTACA---AC-----------CACA--------------------CAGCGCATCGT---------------CTCTGTACATATAT----------------CTAGCTATGTTTCTTAA-------AGAGTGTAAT------TTAGCAATTATATAATTTTAATCACT----------TTGTACATTTGTCTGCAT---------------GCAACTGTT---TCCTGCATCGA-AAGTGTC---ATAAGAAATAGAAA---TATACAGACTTCCA-----CTCCTCCTC--------------------------C---TACGGAATGG----GT
dm3 chr3L:17424659-17424909 - AGTGTATTCCGT-----------ACTGTGTACTTCAAT--------TGCGATCTGCGATTCGCGACAACGTTCGTATTTGATTTTCCTACA---AC-----------CACA--------------------CAGCGCATCGT---------------CTCTGTACATATAT----------------CTAGCTATATTTCTATA-------AAAATGTAAT------TTAGCAATTATGTAATTTTAATCACT----------TTGTACATTTGTCTGCAT---------------GCAACTGTT---TCCTGCATCGA-AAGTGTC---ATAAGAAATAGAAA---TACACAGACTTCCA-----CTCCTCCGC--------------------------C---TACGGAATGG----GT
droEre2 scaffold_4784:16423881-16424124 + AGTTTATTCCGT-----------ACTACGTACTTCA-T--------TGCGATCTGCGATTTGCGAC----TTCGTATTCGATTTTCCTACA---AC-----------CACA--------------------CAGCGCATCGT---------------GTCTGTACATATAT----------------CTAGCAATGTTTCTAAA-------AGAGTGTAAT------TTAGCAATTATGTAATTTTAATCACT---------TTTGTACATTTGTCTGCAT---------------GCAACTGTT---TCCTGCATCGA-AAGTGTT---ATAAGAAATAGAAA---TACACAGACATCC--G---TTCCTCCTC--------------------------CGA------CATGG----GT
droYak3 3L:16641329-16641573 + AGTGTATTCCGT-----------ACTACGTACTCCA-T--------TGCGATCTGCGATTTGCGAC----TTCGTATTCGATTTTCCTACA---AC-----------CACA--------------------CAGCGCATCGT---------------CTCTGTACATATATAT--------------CTAGCAATGTTTCTAAA-------AGAGTGTAAT------TTAGCAATTATGTAATTTTAATCACT----------TTGTACATTTGTCTGCAT---------------GCAACTGTT---TCCTGCATCGA-AAGTGTC---ATAAGAAATAGAAA---TACACCGACTACC--G---CTCCTCCTT--------------------------CGA------CATGG----GT
droEug1 scf7180000409471:2141854-2142093 + AGCGTATTCCGA-----------ACTACGTACTTCGTT--------------CTGCGATCTTCGAT----TTCGTATTCGATTTTCCTATA---GG-----------CACA--------------------CAGCGCATCGT---------------ATCTGTACATATAT----------------CTAGCCAAGTATCTAAA-------AATGTGTAAA-----ATGTGCAATTATGTAATTTTAATCACT----------TTGTACATTTGTCCGCAT---------------GCAACTGTT---TCCTGCATCGA-AAGTGTC---ATAAGTAATAGAAA---TACACAGACATCCA-G---CTCCCTTTC--------------------------CGC------AATGG----GT
droBia1 scf7180000302428:6795905-6796143 - AGCGTATTCCGT-----------ACTTCGT-------T--------------CTGCGATCTGCGAC----TTCGTATTCAATTTTCCTATAGCAGC-----------CACA--------------------CAGCGCATCGT---------------CTCTGTACATATATAT--------------CGAGCTCTGTATCT-AA-------GGAGTGCAAT------TTAGCAATTATGTAATTTTAATCACT----------TTGTACATTTGTCCGCAT---------------GCAACTGTT---TCCTGCATCGA-TAGTGTCATCATAAGTTATAGAAA---TACACCGACATCCA-G---CTCCTCCGC--------------------------CGC------ATTGG----GT
droTak1 scf7180000416006:354183-354383 + AT---------------------------------GTT--------------CTGCATTCTACGAC----TTCGTATTCGATTTTCCTATA---GC-----------CACA--------------------CAGCGCATCGT---------------CTCTGTACATATTA----------------ATAGCTATGTATCTTAAAACAAAACGAGTGTAAT----ATTTAGCAATTATGTAATTTTAATCACT----------TTGTACATTTGTCCG------------------------------------ATCGA-AAGTGTC---ATAAGTAACAGAAA---TATAAT-------A-G---CTCCTCCTT--------------------------CGC------ATTGG----GT
droEle1 scf7180000490993:347955-348207 - AGCGTATTCCGT-----------TCTACGTACTTCGTTCTGCAATATGCGATCTGCGATCTGCGAC----TTTGTATTCGATT-TCCTATA---GC-----------CACA--------------------CAGCGCAACGT---------------CTCTGTACATATATAT--------------CTAGCGATCTATCT-AA-------TGAGTGTAAT------TTAGCAATTATGTAATTTTAATAACT----------TTGTACATTTGTCCGCAT---------------GCAACTGTT---TCCCGCATCGA-AAGTGTC---ATAAGTAATATAAA---TACACAGACATCCA-G---CTCCTCCTC--------------------------GGC------AATGG----GT
droRho1 scf7180000779956:95982-96218 - AGCGTATTCTGT-----------ACTACGTACTTCGTT--------------CTGCGATCTGCGAC----TTCGTATTCGATT-TCCTATA---GC-----------AACA--------------------CAGCGCATCGT---------------CTCTGTACATAAAT----------------CTAGCTATGTATCT-AA-------TGAGTGTAAT------TTAGCAATTATGTAATTTTAATCACT----------TTGTACATTTGTCCGCAT---------------GCAACTGTT---TCCCGCATCGA-AAGTGTC---ATAAGTAATATAAA---TACACAGACATCCA-G---CTCCTCCTC--------------------------CGC------AATGG----GT
droFic1 scf7180000454107:983700-983938 - AGCGTATTCCGT-----------ACTACGTACTTCGTT--------------CTGCGTTCTGCGAC----TTCGTATTCGATTTTCCTATA---GC-----------CACA--------------------CAGCGCATCGT---------------CTCTGTACATATAT----------------CTAGCTATGTATCTCAA-------TAAGTGCAAT------TTAGCAATTTTGTAATTTTAATCACT----------TTGTACATTTGTCCGCAT---------------GCAACTGTT---TCCTGCATCGA-AAGTGTC---ATAAGTAATAGAAA---TACACAGACATCAA-A---CTCCTCCTC--------------------------TGC------AATGG----GT
droKik1 scf7180000302474:763564-763784 - AGAGTATTCCGT-----------ACACCGTATTCCG----------------------------------TGCGTATTCGATT-TCCTATA---GGCACACAGGCACC-CA--------------------CAGCGCGTCGT---------------CTCTGTACATAA--------------------------GTATCTATA-------AGTGTGCAAT------TTAGCAAATATGTAATTTTAATCGCT----------TTGTATAT-TGTCCGCAT---------------GCAACTGTT---TCCTGCATCGA-AAGTGTC---ATAAGTAATAGAAA---TACACAGACATCCA-G---CTCCTCCTT--------------------------GGG------ACGAA----AT
droAna3 scaffold_13337:8378617-8378827 - AATGTATTCTAA-----------AGTTCGTAC--------------------------------------------TTCGATTGTCCTATA---GC-----------CTCACCCCAACACAGTTGCCGTGGCAGCGCACCGT---------------ATCTGTACATATTT----------------CTAGCTATGTATTT-AA-------CGAGTATAAT------TTAGCAATTATCTAATTTTAATCACT----------TTGTACATTTGTCTGCAT---------------GCAACTGTT---TCCTGCATTGAAAAGTGTC---ATAAGTAACAGAAA---TATACAGACATT--------------------------------------------------------------
droBip1 scf7180000396541:525561-525746 - TCGAACTTTCGT-----------AC---------------------------------------------------TTCGATTTTCCTTTAGACTC-----------CTCCACCCAACACAGCTGCCCCAGCAGCCCATCGT---------------ATCTGTATATATTT----------------CTAGCTATGTATTA-AA-------CGAGTATATT------TTAGCAAATTTTTAATTTTAATCACT----------TTGTACATTTGTCTGCAA---------------TATAC------------------------GA---ATAAGTAATAGAAA---TATACAGACATT--------------------------------------------------------------
dp5 XR_group6:9211840-9212098 + ACCATATATCGT-----------ATT--------------------------------------------TTCGTAT-----CTTCC-------CC-----------CACA---------------------AGCGCATCGT---------------ATCTGTACATATATAAATATATATATATACATAGTTATGTATCT-AA-------CGAGTGTAATTACTAATTAGCAATTATGTAATTTTAATCACT----------TTGTACATTTTTC--CAT---------------GCAACTGTT---TTCTGCATCAA-GAGTGTC---ATAAGTAATAGAAAATATACACAGACATCCGAGATACTCCTGCTTGGTCTCGTTATCGTCCCGTACCGTCTCAC------AGTGGAAATGT
droPer2 scaffold_35:510997-511245 - T-CGTATT--------------------------------------------------------------TTCGTAT-----CTTCC-------CC-----------CACA---------------------AGCGCATCGT---------------ATCTGTACATATATAAATATAT--ATATACATAGTTATGTATCT-AA-------CGAGTGTAATTACTAATTAGCAATTATGTAATTTTAATCACT----------TTGTACATTTTTC--CAT---------------GCAACTGTT---TTCTGCATCAA-GAGTGTC---ATAAGTAATAGAAAATATACACAGACATCCAAGATACTCCTGCTTCGTCTCGTTATCGTCCCGTTCCGTCTCGC------AGTGGAAATGT
droWil2 scf2_1100000004822:3500357-3500357 + A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13049:5856906-5857082 + TATGTACCCA-TAGAGAAAGAGTATCGCGAATTCGACT--------TGAGAC--------------------------------------C---AACACAAA------ATG--------------------AAGCACATTGTTAACTGTCAACTCTGAACTGTACATA--T----------------GTAGTTATGTATTT-AAA------AAGAAATACTTATATTTAAGCACTTATGTAATTTAAATGTCT----------TTGTAAATTTATAT--AC---------------GCAATTGCT--------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:13222321-13222551 - TATGTATCTA-T-----------A---------TCAAT--------AGAGAATCG-GATCATCGAT------------------------A---AC-----------GAAA----------------------GCG-AGCGTGTATTGTAAACTGTAAACTGTACATA--T----------------GTAGTTATGTATTTTAT---------------------------CATAATTCTAATTATTATTATCATAAATGCACTTGTATA----------ATTTATTCATAATTATGATAATGTGTGTGTTCGCATCAA-CTGTGTC---ATAAGTTAATGAAC---ATGAATAACATCCGTA---GACCTCCTC--------------------------CACAT----ACATA----GT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGTGTATTCCGT-----------ACTGCGTACTTCAGT--------TGCGATCTGCGATTCGCGACAACGTTCGTATTCGATT-TCCTACA---AC-----------CACA--------------------CAGCGCATCGT---------------CTCTGTACATATAC----------------CTAGCTATGTTTCTTAA-------AGAGTGTAAT------TTAGCAATTATATAATTTTAATCACT----------TTGTACATTTGTCTGCAT---------------GCAACTGTT---TCCTGCATCAA-AAGTGTC---ATAAGAAATAGAAA---TACACAGACTTCCA-----CTCGTCCTC--------------------------C---TACGGAGTGG----GTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................TTAATCACT----------TTGTACATTTGTCTGCA.............................................................................................................................................2614.00400000040000000000
.....................................................................................................................................................................................................................................................TAATCACT----------TTGTACATTTGTCTGCA.............................................................................................................................................2513.00300000021000000000
...............................................................................................C-----------CACA--------------------CAGCGCATCGT---------------CTCTG...................................................................................................................................................................................................................................................................2113.00300300000000000000
..........................................................................................A---AC-----------CACA--------------------CAGCGCATCGT---------------CTCT....................................................................................................................................................................................................................................................................2213.00300200010000000000
.....................................................................................................................................GCGCATCGT---------------CTCTGTACA...............................................................................................................................................................................................................................................................1812.00200200000000000000
..........................................................................................................................................................................................................AA-------AGAGTGTAAT------TTAGCAATTATA......................................................................................................................................................................................2412.00200000000002000000
.......................................................................................TACA---AC-----------CACA--------------------CAGCGCATCGT---------------CTCTG...................................................................................................................................................................................................................................................................2612.00200000020000000000
............................GTACTTCAGT--------TGCGATCTGCGATTCGC......................................................................................................................................................................................................................................................................................................................................................................2712.00200200000000000000
.............................................................................................................CA--------------------CAGCGCATCGT---------------CTCTG...................................................................................................................................................................................................................................................................1812.00210100000000000000
.....................................................................................................................................................................................................................................................................................................................................TC---ATAAGAAATAGAAA---TACACAGACT................................................................2612.00200000011000000000
...................................................................................................................................................................................................................................................TTTAATCACT----------TTGTACATTTGTCTGCA.............................................................................................................................................2712.00200000011000000000
....................................................................................TCCTACA---AC-----------CACA--------------------CAGCGCATCGT---------------CTC.....................................................................................................................................................................................................................................................................2712.00200000001001000000
..................................CAGT--------TGCGATCTGCGATTCGC......................................................................................................................................................................................................................................................................................................................................................................2112.00200200000000000000
.......................................................................................................................................................................................................................................................................................................................................................A---TACACAGACTTCCA-----CTC....................................................1812.00201100000000000000
....................................................................................TCCTACA---AC-----------CACA--------------------CAGCGCATCGT---------------C.......................................................................................................................................................................................................................................................................2512.00200000000000020000
.................................................................................................................................................................................................................................................................................GTCTGCAT---------------GCAACTGTT---TCCT.............................................................................................................2112.00200200000000000000
...GTATTCCGT-----------ACTGCGTACTT...................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
..........................................................................................................................................................................................................................................................................TACATTTGTCTGCAT---------------GCAACTGT.....................................................................................................................2311.00100000000000010000
....................................................................................................................................................................................................................................................................................TGCAT---------------GCAACTGTT---TCCTGCATC........................................................................................................2311.00100000000000001000
....................................................................................................................................................................................................................................................TTAATCACT----------TTGTACATTTGTCTG...............................................................................................................................................2411.00100100000000000000
..............................................................................................AC-----------CACA--------------------CAGCGCATCGT---------------CTCTGT..................................................................................................................................................................................................................................................................2311.00101000000000000000
.........................................................................................................................................................................................................TAA-------AGAGTGTAAT------TTAGCAATTATA......................................................................................................................................................................................2511.00100000000001000000
..............................................................................................................A--------------------CAGCGCATCGT---------------CTCTGT..................................................................................................................................................................................................................................................................1811.00101000000000000000
.................................................................................................................................................................................................................................................ATTTTAATCACT----------TTGTACATTTGTCTGCA.............................................................................................................................................2911.00100010000000000000
...............................................................................................................................................................................................CTATGTTTCTTAA-------AGAGTGTA..........................................................................................................................................................................................................2111.00100000010000000000
............................................................................................................................................................................................................................................................................CATTTGTCTGCAT---------------GCAACTGTT---TCCTGC...........................................................................................................2811.00100000001000000000
..........................................................................................A---AC-----------CACA--------------------CAGCGCATCGT---------------CTC.....................................................................................................................................................................................................................................................................2111.00101000000000000000
..................................................................................T-TCCTACA---AC-----------CACA--------------------CAGCGCATCGT---------------C.......................................................................................................................................................................................................................................................................2611.00100000000000010000
.....ATTCCGT-----------ACTGCGTACTTCAGT--------.......................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
..........................................................................................A---AC-----------CACA--------------------CAGCGCATCGT---------------CTCTGTACA...............................................................................................................................................................................................................................................................2711.00100000010000000000
........................................................................................................................................................................................................................................................TCACT----------TTGTACATTTGTCTGCA.............................................................................................................................................2211.00100000001000000000
..................................................................................................................................................................................................................................................TTTTAATCACT----------TTGTACATTTGTCTGCA.............................................................................................................................................2811.00100000010000000000
........................................................................................................................................................................TAC----------------CTAGCTATGTTTCTTAA-------AGAGTGT...........................................................................................................................................................................................................2711.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................AA---TACACAGACTTCCA-----CTCGTCCTC--------------------------....................2511.00100000000000010000
.......................................................................................................................................................................................................................................................ATCACT----------TTGTACATTTGTCTGCAT---------------GCA..........................................................................................................................2711.00100000010000000000
.....................................................................................................................................................................................................................AGTGTAAT------TTAGCAAT..........................................................................................................................................................................................1611.00100000000001000000
......................................................................................................................................................................................................TCTTAA-------AGAGTGTAAT------TTAGCAATT.........................................................................................................................................................................................2511.00100000001000000000
...................................................TCTGCGATTCGCGACAACGTT.............................................................................................................................................................................................................................................................................................................................................................2111.00100000001000000000
................................................................................................................................................................................................................................................................................TGTCTGCAT---------------GCAACTGT.....................................................................................................................1711.00100000000001000000
............................................................................................................................................................................................TAGCTATGTTTCTTAA-------AGAGTGTAAT------T.................................................................................................................................................................................................2711.00100000000100000000
................................................................................................................................................................................................................................................................................................................T---TCCTGCATCAA-AAGTGTC---ATAAGAT....................................................................................2611.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................TAAGAAATAGAAA---TACACAGACTT...............................................................2411.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................ACAGACTTCCA-----CTCGTCCT...............................................1911.00100100000000000000
.................................................................................................................................................................................................................................................................................GTCTGCAT---------------GCAACTGTT---TCCTGC...........................................................................................................2311.00100010000000000000
............................GTACTTCAGT--------TGCGATCTGC.............................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
........................................................................................ACA---AC-----------CACA--------------------CAGCGCATCGT---------------C.......................................................................................................................................................................................................................................................................2111.00100000010000000000
...........................................................................................................................................................................................................................................................CT----------TTGTACATTTGTCT................................................................................................................................................1611.00100000001000000000
...................................................................................................................................................................................................................................................................................................................................TGTC---ATAAGAAATAGAAA---TACACAGA..................................................................2611.00100000000100000000
..........................GCGTACTTCAGT--------TGCGATCTGCGA...........................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
.................................................................................TT-TCCTACA---AC-----------CACA--------------------CAGCGCATC.........................................................................................................................................................................................................................................................................................2411.00100000010000000000
........................................................................................................................................................................................................................................................................TGTACATTTGTCTGCAT---------------GCAACTGT.....................................................................................................................2511.00100000000001000000
............................................................................................................................................................................................TAGCTATGTTTCTTAA-------AGAGT.............................................................................................................................................................................................................2111.00100000000000001000
...........................................................................................................................................................................................................................................................................................................................................................TACACAGACTTCCA-----CTCGTCCTC--------------------------C---................2411.00100000000000010000
.......................................................................................TACA---AC-----------CACA--------------------CAGCGCATCGT---------------CTCTGTA.................................................................................................................................................................................................................................................................2811.00100000010000000000
.....................................................................................CCTACA---AC-----------CACA--------------------CAGCGCATCGT---------------CTC.....................................................................................................................................................................................................................................................................2611.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................TGTC---ATAAGAAATAGAAA---TACACAGAC.................................................................2711.00100000000000001000
...........................................................................................................................................................................................................................................................................................................................................TAAGAAATAGAAA---TACACAGA..................................................................2111.00100000010000000000
...........T-----------ACTGCGTACTTCAGT--------TGCGA..................................................................................................................................................................................................................................................................................................................................................................................2111.00100000001000000000
................................................................................................................................................................................................................................................................................TGTCTGCAT---------------GCAACTGTT---TCCTGC...........................................................................................................2411.00100010000000000000
...............................................................GACAACGTTCGTATTCGA....................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
.............................................................................................................................................................................................................................................................................ATTTGTCTGCAT---------------GCAACTGT.....................................................................................................................2011.00100100000000000000
..............................................................................................................................................................................................................................................................................TTTGTCTGCAT---------------GCAACTGTT---TCCTGC...........................................................................................................2611.00100000000001000000
....................................................CTGCGATTCGCGACAACGTTCG...........................................................................................................................................................................................................................................................................................................................................................2211.00100000010000000000
.................................................................................TT-TCCTACA---AC-----------CACA--------------------CAGCGCATCGT---------------C.......................................................................................................................................................................................................................................................................2711.00100000001000000000
..................................................................................................................................................................................................................................................TTTTAATCACT----------TTGTACATTTGTCTGC..............................................................................................................................................2711.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................AGAAA---TACACAGACTTCCA-----CTCGTCC................................................2611.00100010000000000000
...............................................................................................................................................................................................................................................................................................................TT---TCCTGCATCAA-AAGTGTC---ATAAGA.....................................................................................2611.00100000001000000000
......................................................................................................................................................................................................................................................AATCACT----------TTGTACATTTGTCTGCA.............................................................................................................................................2411.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................TAGAAA---TACACAGAC.................................................................1520.50100000000001000000
........................................................................................................................................................................................................................................................................TGTACATTTGTCTGCAT---------------G............................................................................................................................1820.50101000000000000000
droSec2
AGTGTATACCGT-----------ACTGCGTACTTCAGT--------TGCGATCTGCGATTCGCGACAACGTTCGTATTCGATT-TCCTACA---AC-----------CACA--------------------CAGCGCATCGT---------------CTCTGTACATATAT----------------CTAGCTATGTTTCTTAA-------AGAGTGTAAT------TTAGCAATTATATAATTTTAATCACT----------TTGTACATTTGTCTGCAT---------------GCAACTGTT---TCCTGCATCGA-AAGTGTC---ATAAGAAATAGAAA---TATACAGACTTCCA-----CTCCTCCTC--------------------------C---TACGGAATGG----GTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................GTT---TCCTGCATCGA-AAGTGTC---ATAAGA.....................................................................................2713.0030120
........................................................................................ACA---AC-----------CACA--------------------CAGCGCATCGT---------------CTCTGT..................................................................................................................................................................................................................................................................2612.0022000
...............................CTTCAGT--------TGCGATCTGCGATTCGC......................................................................................................................................................................................................................................................................................................................................................................2412.0020110
.........................TGCGTACTTCAGT--------TGCGATCTGC.............................................................................................................................................................................................................................................................................................................................................................................2311.0010100
......................................................................................................................................................................................................................................................................................................................CTGCATCGA-AAGTGTC---ATA........................................................................................1911.0010010
................................................................................................................................................................................................................................................................................................................T---TCCTGCATCGA-AAGTGTC---ATAAGA.....................................................................................2511.0011000
..........................................................................................................................................................................................................................................................................................................AACTGTT---TCCTGCATCGA-A....................................................................................................1911.0010010
...........................................................................................................................................................................................CTAGCTATGTTTCTTAA-------AGAGT.............................................................................................................................................................................................................2211.0010010
...............................................................................................................................................................................................................................................................................................................................................................................TCCTCCTC--------------------------C---TACGGAATGG----GT2111.0010010
...........................................................................................................CACA--------------------CAGCGCATCGT---------------CTCTG...................................................................................................................................................................................................................................................................2011.0010010
....................................GT--------TGCGATCTGCGATTCGC......................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.................................................................................TT-TCCTACA---AC-----------CACA--------------------CAGCGC............................................................................................................................................................................................................................................................................................2111.0010010
....................................................................................................................................................................................................................................................................................................................TCCTGCATCGA-AAGTGTC---ATAAGA.....................................................................................2411.0010100
................................................................................................................................................................................................................................................................................................................................................................................CCTCCTC--------------------------C---TACGGAATGG----GT2011.0010010
...............................................................................GATT-TCCTACA---AC-----------CACA--------------------CAGCGC............................................................................................................................................................................................................................................................................................2311.0010010
......................................................................................CTACA---AC-----------CACA--------------------CAGCGCATCG........................................................................................................................................................................................................................................................................................2111.0010001
.........................................................................................CA---AC-----------CACA--------------------CAGCGCATCGT---------------CT......................................................................................................................................................................................................................................................................2111.0011000
....................................GT--------TGCGATCTGCGATTCGCGA....................................................................................................................................................................................................................................................................................................................................................................2111.0010010
...................................AGT--------TGCGATCTGCGATTCGC......................................................................................................................................................................................................................................................................................................................................................................2011.0010010
...................................................................................................................................................................................................................AGAGTGTAAT------TTAGCAATT.........................................................................................................................................................................................1911.0010010
............................................................................................................ACA--------------------CAGCGCATCGT---------------CTCT....................................................................................................................................................................................................................................................................1811.0010010
........................................................................................................................................................................................................TTAA-------AGAGTGTAAT------TTAGCA............................................................................................................................................................................................2011.0010001
......................................................................................CTACA---AC-----------CACA--------------------CAGCGCATCGT---------------CTCT....................................................................................................................................................................................................................................................................2611.0010010
.................................TCAGT--------TGCGATCTGCGATTCGCGAC...................................................................................................................................................................................................................................................................................................................................................................2511.0010010
......................................................GCGATTCGCGACAACGTTCG...........................................................................................................................................................................................................................................................................................................................................................2011.0011000
..........................................................................................................................................................................................................................................................................................................................ATCGA-AAGTGTC---ATAAGAAATAGAA..............................................................................2511.0010010
................................TTCAGT--------TGCGATCTGCGATTCGC......................................................................................................................................................................................................................................................................................................................................................................2311.0010100
..............................ACTTCAGT--------TGCGATCTGCGATTCGC......................................................................................................................................................................................................................................................................................................................................................................2511.0010100
....................................................................................................................................................................................................................................................................................................................................GTC---ATAAGAAATAGAAA---T.........................................................................1811.0010010
dm3
AGTGTATTCCGT-----------ACTGTGTACTTCAAT--------TGCGATCTGCGATTCGCGACAACGTTCGTATTTGATTTTCCTACA---AC-----------CACA--------------------CAGCGCATCGT---------------CTCTGTACATATAT----------------CTAGCTATATTTCTATA-------AAAATGTAAT------TTAGCAATTATGTAATTTTAATCACT----------TTGTACATTTGTCTGCAT---------------GCAACTGTT---TCCTGCATCGA-AAGTGTC---ATAAGAAATAGAAA---TACACAGACTTCCA-----CTCCTCCGC--------------------------C---TACGGAATGG----GTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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............................................................................TTTGATTTTCCTACA---AC-----------CACA--------------------CAGCGCA...........................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................ACTGTT---TCCTGCATCGA-AAGTGTC---...........................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................TGCGATCTGCGATTCGCGACAACGTTC............................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................CAACTGTT---TCCTGCATCGA-AAGTGTC---...........................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................TACACAGACTTCCA-----CTCCTCC................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TTTGTCTGCAT---------------GCAACTGTT---TCCTG............................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................AACTGTT---TCCTGCATCGA-AAGTGTC---...........................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................AACGTTCGTATTTGATTTTCCT.............................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................ACA--------------------CAGCGCATCGT---------------CTCTGT..................................................................................................................................................................................................................................................................2011.0010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TTTGTCTGCAT---------------GCAACTGTT---TCCT.............................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................TTCGCGACAACGTTCGTATTTGA....................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TTGTCTGCAT---------------GCAACTGTT---TCCTGC...........................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................T---TCCTGCATCGA-AAGTGTC---ATAAGAAA...................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................AC-----------CACA--------------------CAGCGCATCGT---------------CTCT....................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........................................................................................................CACA--------------------CAGCGCATCGT---------------CTC.....................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................AACTGTT---TCCTGCATCGA-AAGTG................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................CACT----------TTGTACATTTGTCTGCAT---------------GCAAC........................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CTTCAAT--------TGCGATCTGCGATT.........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................CCTGCATCGA-AAGTGTC---ATAAGAAAT..................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................CAGCGCATCGT---------------CTCTGTACATATA...........................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................ATCGA-AAGTGTC---ATAAGAAATAGAAA---T.........................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................ACACAGACTTCCA-----CTCCTCC................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................TTCGCGACAACGTTCGTATTTG.....................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TCCTCCGC--------------------------C---TACGGAATGG----GT2111.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................GAAATAGAAA---TACACAGACTTCCA-----CTCC...................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................CTACA---AC-----------CACA--------------------CAGCGCATCG........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
......................................................................................................................................................................................................................................................................................................................................C---ATAAGAAATAGAAA---TACACAGACTTCCA-----C......................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................CT----------TTGTACATTTGTCTGCAT---------------GCAAC........................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TCGA-AAGTGTC---ATAAGAAATAGAAA---T.........................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................................................................................................................................................................................................................................................................................................................................ATAAGAAATAGAAA---TACACAGACT................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................TCGCGACAACGTTCGTATTTGATTTT................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................TACACAGACTTCCA-----CTCCTCCGC--------------------------C---TACGG...........2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................AAT--------TGCGATCTGCGATTCGC......................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TGTCTGCAT---------------GCAACTGTT---TCCTGCATC........................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TGTGTACTTCAAT--------TGCGATCT...............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................TACACAGACTTCCA-----CTCCTCCGC--------------------------C---T...............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................CTACA---AC-----------CACA--------------------CAGCGCATCGT---------------C.......................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................TACACAGACTTCCA-----CTCCTCCGC--------------------------C---TACG............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................CCTACA---AC-----------CACA--------------------CAGCGCATC.........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................GACTTCCA-----CTCCTCCGC--------------------------C---TACGGAATG.......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................ATCTGCGATTCGCGACAACGT..............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TTTCCTACA---AC-----------CACA--------------------CAGCGC............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................ACT----------TTGTACATTTGTCTGCAT---------------.............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................AACTGTT---TCCTGCATCGA-AAGTGTC---A..........................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................ATCACT----------TTGTACATTTGTCTGCAT---------------G............................................................................................................................2511.0010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................CTCCGC--------------------------C---TACGGAATGG----GT1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TCGA-AAGTGTC---ATAAGAAATAGAAA---..........................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................CTCCTCCGC--------------------------C---TACGGAATGG----G.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................GTCTGCAT---------------GCAACTGTT---TCCTGCATC........................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................TCTGCGATTCGCGACAACGTTCGTATTT......................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................AATAGAAA---TACACAGACTTCCA-----CTCC...................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................TACATTTGTCTGCAT---------------GCAACTGT.....................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................TACATTTGTCTGCAT---------------GCAACTGTT---TCC..............................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGTTTATTCCGT-----------ACTACGTACTTCA-T--------TGCGATCTGCGATTTGCGAC----TTCGTATTCGATTTTCCTACA---AC-----------CACA--------------------CAGCGCATCGT---------------GTCTGTACATATAT----------------CTAGCAATGTTTCTAAA-------AGAGTGTAAT------TTAGCAATTATGTAATTTTAATCACT---------TTTGTACATTTGTCTGCAT---------------GCAACTGTT---TCCTGCATCGA-AAGTGTT---ATAAGAAATAGAAA---TACACAGACATCC--G---TTCCTCCTC--------------------------CGA------CATGG----GTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................GTT---TCCTGCATCGA-AAGTGTT---ATAAGA.....................................................................................2713.0030000210
................................................................................................................................................................................................................................................................................................................T---TCCTGCATCGA-AAGTGTT---ATAAGA.....................................................................................2512.0020000110
.................................................................................................................................................................................................................................................................................................................................................ATAGAAA---TACACAGACATCC--...........................................................2012.0020100010
................................................................................................................................................................................................................................................................................................................................................AATAGAAA---TACACAGACATCC--...........................................................2112.0020000020
..............................................................................................AC-----------CACA--------------------CAGCGCATCGT---------------GTCTGTACA...............................................................................................................................................................................................................................................................2611.0010000100
.....................................................................................................................................................................................................................................................................................................................CCTGCATCGA-AAGTGTT---ATAAGA.....................................................................................2311.0010100000
........................................................................................ACA---AC-----------CACA--------------------CAGCGCATCGT---------------G.......................................................................................................................................................................................................................................................................2111.0010000100
..............................................................................................................................................................................................................................................................................................................GTT---TCCTGCATCGA-AAGT.................................................................................................1811.0010000010
.............................................................................................................................................................................................AGCAATGTTTCTAAA-------AGAGTGTAAT------..................................................................................................................................................................................................2511.0010000010
...............................................................................................................................................................................................................................................................................TTGTCTGCAT---------------GCAACTGTT---TCC..............................................................................................................2211.0011000000
..........................................................................................A---AC-----------CACA--------------------CAGCGCATCGT---------------GTCT....................................................................................................................................................................................................................................................................2211.0010000100
.................................................GATCTGCGATTTGCGAC----TT.............................................................................................................................................................................................................................................................................................................................................................1911.0011000000
................................................CGATCTGCGATTTGCGAC----TT.............................................................................................................................................................................................................................................................................................................................................................2011.0011000000
...........................................................................................................................................CGT---------------GTCTGTACATATAT----------------CTAGCAATGT................................................................................................................................................................................................................................2711.0010001000
...................................................................................................................................................................................................GTTTCTAAA-------AGAGTGTAAT------TTAGCA............................................................................................................................................................................................2511.0010000100
...................................................................................TTCCTACA---AC-----------CACA--------------------CAGCGCATCGT---------------........................................................................................................................................................................................................................................................................2511.0011000000
......................................................................................CTACA---AC-----------CACA--------------------CAGCGCATCGT---------------GT......................................................................................................................................................................................................................................................................2411.0010000100
.....................................................................................................................................................................................................TTCTAAA-------AGAGTGTAAT------TTAGC.............................................................................................................................................................................................2211.0010000100
...............................................................................................................................................................................................................................................TAATTTTAATCACT---------TTTGTACATTTGTC.................................................................................................................................................2811.0011000000
...............................................................................................................................................................CTGTACATATAT----------------CTAGCA....................................................................................................................................................................................................................................1811.0010000010
.......................................................................................................................................................................................................................................................................TTGTACATTTGTCTGCAT---------------GCAACTGT.....................................................................................................................2611.0011000000
...........................................................................................................................................................................................................................................................................ACATTTGTCTGCAT---------------GCAACTGTT---.................................................................................................................2311.0011000000
.................................................................................................................................................................GTACATATAT----------------CTAGCAATGTTT..............................................................................................................................................................................................................................2211.0010010000
...............................................................................................................................................................CTGTACATATAT----------------CTAGCAATGTTT..............................................................................................................................................................................................................................2411.0011000000
......................................................................................................................................................................................................................................................................TTTGTACATTTGTCTGCAT---------------GCAAC........................................................................................................................2411.0011000000
.......................................................................................................................................................................................................................................................................................................................................................A---TACACAGACATCC--G---TTCCTCCTC--------------------------CGA------CA.........2911.0011000000
......................................................................................CTACA---AC-----------CACA--------------------CAGCGCATCGT---------------........................................................................................................................................................................................................................................................................2211.0011000000
...................................................................................................................................................................................................................................................................................................................................................................CATCC--G---TTCCTCCTC--------------------------CGA------CATGG----GT2511.0010001000
................................................................................................................................................................................................................................................................................................................................................AATAGAAA---TACACAGACATCC--G---TTCCTC.................................................2811.0011000000
........................................................................................................................................................................................................................................................................................T---------------GCAACTGTT---TCCTGCATCGA-AAGTG................................................................................................2611.0011000000
..........................................................................................A---AC-----------CACA--------------------CAGCGCATCGT---------------GTCTGTAC................................................................................................................................................................................................................................................................2611.0011000000
........................CTACGTACTTCA-T--------TGCGATCTGC.............................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
..............................................................................................................................................................................................................................................................................................................................................................ACAGACATCC--G---TTCCTCCTC--------------------------C...................2111.0011000000
......................................................................................CTACA---AC-----------CACA--------------------CAGCGCAT..........................................................................................................................................................................................................................................................................................1911.0011000000
..................................................................................................................................................................................................................................................................................................................................................TAGAAA---TACACAGACATCC--G---TTCCTCC................................................2711.0011000000
..............................................................................................................................................................................................................................................................................TTTGTCTGCAT---------------GCAACTGTT---TCCT.............................................................................................................2411.0011000000
......................................................................................................................................................................................................................................................................................................................................................AA---TACACAGACATCC--G---TTCCTCCTG--------------------------....................2511.0010100000
.....................................................................................CCTACA---AC-----------CACA--------------------CAGCGCATCGT---------------GTCT....................................................................................................................................................................................................................................................................2711.0010100000
.....................................................................................................................................................................................................TTCTAAA-------AGAGTGTAAT------TTAGCAAT..........................................................................................................................................................................................2511.0010000100
..........................................................................................................................................................................................................................................................................................................AACTGTT---TCCTGCATCGA-AAGTGT...............................................................................................2411.0010000100
droYak3
AGTGTATTCCGT-----------ACTACGTACTCCA-T--------TGCGATCTGCGATTTGCGAC----TTCGTATTCGATTTTCCTACA---AC-----------CACA--------------------CAGCGCATCGT---------------CTCTGTACATATATAT--------------CTAGCAATGTTTCTAAA-------AGAGTGTAAT------TTAGCAATTATGTAATTTTAATCACT----------TTGTACATTTGTCTGCAT---------------GCAACTGTT---TCCTGCATCGA-AAGTGTC---ATAAGAAATAGAAA---TACACCGACTACC--G---CTCCTCCTT--------------------------CGA------CATGG----GTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................TGTT---TCCTGCATCGA-AAGTGTC---...........................................................................................2212.00200100010000
..................................CA-T--------TGCGATCTGCGATTTGCGAC----T..............................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
............................................................................................................................................................................................................................................................................................................CTGTT---TCCTGCATCGA-AAGTGTC---...........................................................................................2311.00100100000000
...................................................................................................................................................................................................GTTTCTAAA-------AGAGTGTAAT------TTAGC.............................................................................................................................................................................................2411.00100000010000
.....................................................................................CCTACA---AC-----------CACA--------------------CAGCGCATCGT---------------........................................................................................................................................................................................................................................................................2311.00100000010000
..............................ACTCCA-T--------TGCGATCTGCGATTTGCGAC----...............................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
...........................................................................................................................................................................................................A-------AGAGTGTAAT------TTAGCAATTATGT.....................................................................................................................................................................................2411.00100000010000
....................................................................................................................................................................................................................................................................................................................................................GAAA---TACACCGACTACC--G---CTCCTCC................................................2511.00100100000000
..............................................................................................................................................................................................................................................................................................................GTT---TCCTGCATCGA-AAGTGT...............................................................................................2011.00100000010000
..................................................................................TTTCCTACA---AC-----------CACA--------------------CAGCGCATCGT---------------CTC.....................................................................................................................................................................................................................................................................2911.00101000000000
................................................................................................................................................................................................................................................................................TGTCTGCAT---------------GCAACTGTT---TCCTGCA..........................................................................................................2511.00101000000000
.........................................................................................................................................................................ATAT--------------CTAGCAATGTTTCTAAA-------AGAGTG............................................................................................................................................................................................................2711.00100000010000
................................................CGATCTGCGATTTGCGAC----TT.............................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
............................................................................................................................................................................................................................................................................CATTTGTCTGCAT---------------GCAACT.......................................................................................................................1911.00100100000000
.........................................................................................................................................................................................................................................................................GTACATTTGTCTGCAT---------------GCA..........................................................................................................................1911.00101000000000
................................................................................................................................................................................................AATGTTTCTAAA-------AGAGTGTAAT------TTAGCA............................................................................................................................................................................................2811.00100000010000
........................................................................................ACA---AC-----------CACA--------------------CAGCGCATCGT---------------CTCT....................................................................................................................................................................................................................................................................2411.00100100000000
......TTCCGT-----------ACTACGTACTCCA-T--------TGC....................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
...........................................................................................................CACA--------------------CAGCGCATCGT---------------CTCT....................................................................................................................................................................................................................................................................1911.00100000100000
.........................................................................................................................................................................................................................................................................GTACATTTGTCTGCAT---------------GCAACTGT.....................................................................................................................2411.00100000100000
...........................................................................................................CACA--------------------CAGCGCATCGT---------------CTCTGTACAT..............................................................................................................................................................................................................................................................2511.00101000000000
..........................................................................................A---AC-----------CACA--------------------CAGCGCATCGT---------------CTCTGTAC................................................................................................................................................................................................................................................................2611.00101000000000
...............................................................................................................................................................................................................................................................................................................TT---TCCTGCATCGA-AAGTGTC---...........................................................................................2011.00100000010000
...GTATTCCGT-----------ACTACGTACTCCA-T--------TGC....................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
........................................................................................................................................................................................................................................................................................................GCAACTGTT---TCCTGCATCGA-AAGT.................................................................................................2411.00100000010000
...........................................................................................................................................................................................CTAGCAATGTTTCTAAA-------AGAGTGTA..........................................................................................................................................................................................................2511.00100000010000
..........................................................................................................................................................................................................................................................................................................AACTGTT---TCCTGCATCGA-AAGTG................................................................................................2311.00100000010000
........................................................................................................................................................................................................................................................................TGTACATTTGTCTGCAT---------------GC...........................................................................................................................1911.00101000000000
.........................................................................................................................................................................................................................................................CACT----------TTGTACATTTGTCTGCAT---------------GC...........................................................................................................................2411.00100000010000
................................................................................................................................................................................................................................................................................................................T---TCCTGCATCGA-AAGTGTC---ATAAGA.....................................................................................2511.00100000010000
..................................................................................................................................................................................................................................................................................................................................................TAGAAA---TACACCGACTACC--G---CTCCTCC................................................2711.00101000000000
..........................................................................................A---AC-----------CACA--------------------CAGCGCATCGT---------------CT......................................................................................................................................................................................................................................................................2011.00100000010000
.........................................................................GTATTCGATTTTCCTACA---AC-----------CACA--------------------CA................................................................................................................................................................................................................................................................................................2611.00101000000000
.....ATTCCGT-----------ACTACGTACTCCA-T--------TGCGATCT...............................................................................................................................................................................................................................................................................................................................................................................2911.00110000000000
..........................................................................................................................................................................................................................................................................................................................ATCGA-AAGTGTC---ATAAGAAATAGA...............................................................................2411.00100100000000
............................................................................................................................................................................................................................................................T----------TTGTACATTTGTCTGCAT---------------GC...........................................................................................................................2111.00100100000000
......................................................................................................................................................................................................................................................AATCACT----------TTGTACATTTGTCTGC..............................................................................................................................................2311.00100100000000
...................................................................................................................................................................................................GTTTCTAAA-------AGAGTGTAAT------TTAGCA............................................................................................................................................................................................2511.00100000010000
.....................................................................................................................................GCGCATCGT---------------CTCTGTACATAT............................................................................................................................................................................................................................................................2111.00100100000000
droEug1
AGCGTATTCCGA-----------ACTACGTACTTCGTT--------------CTGCGATCTTCGAT----TTCGTATTCGATTTTCCTATA---GG-----------CACA--------------------CAGCGCATCGT---------------ATCTGTACATATAT----------------CTAGCCAAGTATCTAAA-------AATGTGTAAA-----ATGTGCAATTATGTAATTTTAATCACT----------TTGTACATTTGTCCGCAT---------------GCAACTGTT---TCCTGCATCGA-AAGTGTC---ATAAGTAATAGAAA---TACACAGACATCCA-G---CTCCCTTTC--------------------------CGC------AATGG----GTSizeHit CountTotal NormTotal
No Reads
droBia1
AGCGTATTCCGT-----------ACTTCGT-------T--------------CTGCGATCTGCGAC----TTCGTATTCAATTTTCCTATAGCAGC-----------CACA--------------------CAGCGCATCGT---------------CTCTGTACATATATAT--------------CGAGCTCTGTATCT-AA-------GGAGTGCAAT------TTAGCAATTATGTAATTTTAATCACT----------TTGTACATTTGTCCGCAT---------------GCAACTGTT---TCCTGCATCGA-TAGTGTCATCATAAGTTATAGAAA---TACACCGACATCCA-G---CTCCTCCGC--------------------------CGC------ATTGG----GTSizeHit CountTotal NormTotal
No Reads
droTak1
AT---------------------------------GTT--------------CTGCATTCTACGAC----TTCGTATTCGATTTTCCTATA---GC-----------CACA--------------------CAGCGCATCGT---------------CTCTGTACATATTA----------------ATAGCTATGTATCTTAAAACAAAACGAGTGTAAT----ATTTAGCAATTATGTAATTTTAATCACT----------TTGTACATTTGTCCG------------------------------------ATCGA-AAGTGTC---ATAAGTAACAGAAA---TATAAT-------A-G---CTCCTCCTT--------------------------CGC------ATTGG----GTSizeHit CountTotal NormTotal
No Reads
droEle1
AGCGTATTCCGT-----------TCTACGTACTTCGTTCTGCAATATGCGATCTGCGATCTGCGAC----TTTGTATTCGATT-TCCTATA---GC-----------CACA--------------------CAGCGCAACGT---------------CTCTGTACATATATAT--------------CTAGCGATCTATCT-AA-------TGAGTGTAAT------TTAGCAATTATGTAATTTTAATAACT----------TTGTACATTTGTCCGCAT---------------GCAACTGTT---TCCCGCATCGA-AAGTGTC---ATAAGTAATATAAA---TACACAGACATCCA-G---CTCCTCCTC--------------------------GGC------AATGG----GTSizeHit CountTotal NormTotal
No Reads
droRho1
AGCGTATTCTGT-----------ACTACGTACTTCGTT--------------CTGCGATCTGCGAC----TTCGTATTCGATT-TCCTATA---GC-----------AACA--------------------CAGCGCATCGT---------------CTCTGTACATAAAT----------------CTAGCTATGTATCT-AA-------TGAGTGTAAT------TTAGCAATTATGTAATTTTAATCACT----------TTGTACATTTGTCCGCAT---------------GCAACTGTT---TCCCGCATCGA-AAGTGTC---ATAAGTAATATAAA---TACACAGACATCCA-G---CTCCTCCTC--------------------------CGC------AATGG----GTSizeHit CountTotal NormTotal
No Reads
droFic1
AGCGTATTCCGT-----------ACTACGTACTTCGTT--------------CTGCGTTCTGCGAC----TTCGTATTCGATTTTCCTATA---GC-----------CACA--------------------CAGCGCATCGT---------------CTCTGTACATATAT----------------CTAGCTATGTATCTCAA-------TAAGTGCAAT------TTAGCAATTTTGTAATTTTAATCACT----------TTGTACATTTGTCCGCAT---------------GCAACTGTT---TCCTGCATCGA-AAGTGTC---ATAAGTAATAGAAA---TACACAGACATCAA-A---CTCCTCCTC--------------------------TGC------AATGG----GTSizeHit CountTotal NormTotal
No Reads
droKik1
AGAGTATTCCGT-----------ACACCGTATTCCG----------------------------------TGCGTATTCGATT-TCCTATA---GGCACACAGGCACC-CA--------------------CAGCGCGTCGT---------------CTCTGTACATAA--------------------------GTATCTATA-------AGTGTGCAAT------TTAGCAAATATGTAATTTTAATCGCT----------TTGTATAT-TGTCCGCAT---------------GCAACTGTT---TCCTGCATCGA-AAGTGTC---ATAAGTAATAGAAA---TACACAGACATCCA-G---CTCCTCCTT--------------------------GGG------ACGAA----ATSizeHit CountTotal NormTotal
No Reads
droAna3
AATGTATTCTAA-----------AGTTCGTAC--------------------------------------------TTCGATTGTCCTATA---GC-----------CTCACCCCAACACAGTTGCCGTGGCAGCGCACCGT---------------ATCTGTACATATTT----------------CTAGCTATGTATTT-AA-------CGAGTATAAT------TTAGCAATTATCTAATTTTAATCACT----------TTGTACATTTGTCTGCAT---------------GCAACTGTT---TCCTGCATTGAAAAGTGTC---ATAAGTAACAGAAA---TATACAGACATT--------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................GTACATATTT----------------CTAGCTATGT................................................................................................................................................................................................................................2011.001100000
.............................................................................TCGATTGTCCTATA---GC-----------CTCA......................................................................................................................................................................................................................................................................................................................2011.001100000
.....ATTCTAA-----------AGTTCGTAC--------------------------------------------TTCGATT..................................................................................................................................................................................................................................................................................................................................................2311.001010000
...........................................................................................................................................................................................................................................................CT----------TTGTACATTTGTCTGCAT---------------GCAAC........................................................................................................................2511.001010000
.......................................................................................................................................................................................................................................................ATCACT----------TTGTACATTTGTC.................................................................................................................................................1911.001010000
.............................................................................TCGATTGTCCTATA---GC-----------CTCACCCC..................................................................................................................................................................................................................................................................................................................2411.001100000
........................................................................................................................................................................................................................................................TCACT----------TTGTACATTTGTCTGCAT---------------GCAACT.......................................................................................................................2911.001010000
........................................................................................ATA---GC-----------CTCACCCCAACACAGT..........................................................................................................................................................................................................................................................................................................2111.001001000
...................................................................................................................AACACAGTTGCCGTGGCAGCGCACCGC---------------........................................................................................................................................................................................................................................................................2711.001010000
......................................................................................................................................................................................................................................................AATCACT----------TTGTACATTTGTCTGC..............................................................................................................................................2311.001010000
.................................................................................................................................................................................................................................................ATTTTAATCACT----------TTGTACA.......................................................................................................................................................1911.001010000
..................................................................................................................................................................................................................................................................................................................................GTGTC---ATAAGTAACAGAAA---..........................................................................1911.001000001
........................................................................................................................................................................................................................................................................................................GCAACTGTT---TCCTGCATTGAAAAGT.................................................................................................2511.001100000
...............................................................................................................CCCCAACACAGTTGCCGTGGCAGCGCAC..........................................................................................................................................................................................................................................................................................2811.001010000
......................................................................................................................................................................................................................................................AATCACT----------TTGTACATTTGTCTGCAT---------------.............................................................................................................................2511.001010000
..............................................................................................................................................................................................................................................................................................................GTT---TCCTGCATTGAAAAGT.................................................................................................1911.001000001
.............................................................................................................................................................................................................................................................................ATTTGTCTGCAT---------------GCAACTGTT---TCCT.............................................................................................................2511.001010000
......................................................................................CTATA---GC-----------CTCACCCCAACACA............................................................................................................................................................................................................................................................................................................2111.001010000
........CTAA-----------AGTTCGTAC--------------------------------------------TTCGATTGTCC..............................................................................................................................................................................................................................................................................................................................................2411.001100000
...................................................................................................................AACACAGTTGCCGTGGCAGCGCACCGT---------------........................................................................................................................................................................................................................................................................2711.001000010
........................GTTCGTAC--------------------------------------------TTCGATTGTCC..............................................................................................................................................................................................................................................................................................................................................1911.001010000
...................................................................................GTCCTATA---GC-----------CTCACCCCAACAC.............................................................................................................................................................................................................................................................................................................2311.001100000
droBip1
TCGAACTTTCGT-----------AC---------------------------------------------------TTCGATTTTCCTTTAGACTC-----------CTCCACCCAACACAGCTGCCCCAGCAGCCCATCGT---------------ATCTGTATATATTT----------------CTAGCTATGTATTA-AA-------CGAGTATATT------TTAGCAAATTTTTAATTTTAATCACT----------TTGTACATTTGTCTGCAA---------------TATAC------------------------GA---ATAAGTAATAGAAA---TATACAGACATT--------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
ACCATATATCGT-----------ATT--------------------------------------------TTCGTAT-----CTTCC-------CC-----------CACA---------------------AGCGCATCGT---------------ATCTGTACATATATAAATATATATATATACATAGTTATGTATCT-AA-------CGAGTGTAATTACTAATTAGCAATTATGTAATTTTAATCACT----------TTGTACATTTTTC--CAT---------------GCAACTGTT---TTCTGCATCAA-GAGTGTC---ATAAGTAATAGAAAATATACACAGACATCCGAGATACTCCTGCTTGGTCTCGTTATCGTCCCGTACCGTCTCAC------AGTGGAAATGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................TTTC--CAT---------------GCAACTGTT---TTCTG............................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................AACTGTT---TTCTGCATCAA-GAGT.................................................................................................2211.0010100000000
.........................................................................................................................................ATCGT---------------ATCTGTACATATATAAAT......................................................................................................................................................................................................................................................2311.0010100000000
....................................................................................TCC-------CC-----------CACA---------------------AGCGCATCGT---------------ATCTGTACA...............................................................................................................................................................................................................................................................2811.0010100000000
...........................................................................................................................................................................................................................................................................................................ACTGTT---TTCTGCATCAA-GAGT.................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................AACTGTT---TTCTGCATCAA-G....................................................................................................1911.0010100000000
.............................................................................................................CA---------------------AGCGCATCGT---------------ATCTGTACATAT............................................................................................................................................................................................................................................................2411.0010100000000
droPer2
T-CGTATT--------------------------------------------------------------TTCGTAT-----CTTCC-------CC-----------CACA---------------------AGCGCATCGT---------------ATCTGTACATATATAAATATAT--ATATACATAGTTATGTATCT-AA-------CGAGTGTAATTACTAATTAGCAATTATGTAATTTTAATCACT----------TTGTACATTTTTC--CAT---------------GCAACTGTT---TTCTGCATCAA-GAGTGTC---ATAAGTAATAGAAAATATACACAGACATCCAAGATACTCCTGCTTCGTCTCGTTATCGTCCCGTTCCGTCTCGC------AGTGGAAATGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................................................................................................................................CAACTGTT---TTCTGCATCAA-GAGT.................................................................................................2313.003300000
................................................................................................................................................................................................TATGTATCT-AA-------CGAGTGTAATTACTAAT.................................................................................................................................................................................................2812.002200000
.......................................................................................................................................................................................................................................................................................................................................................AATATACACAGACATCCAAG..........................................................2011.001010000
.................................................................................................................................................................................................................................................................................................................................................ATAGAAAATATACACAGACATCCAAG..........................................................2611.001001000
.........................................................................................................................................................................................................................................................................................................CAACTGTT---TTCTGCATCAA-GAGC.................................................................................................2311.001100000
...........................................................................AT-----CTTCC-------CC-----------CACA---------------------AGCGCATCGT---------------........................................................................................................................................................................................................................................................................2311.001010000
..................................................................................CTTCC-------CC-----------CACA---------------------AGCGCATCGT---------------........................................................................................................................................................................................................................................................................2111.001001000
.....ATT--------------------------------------------------------------TTCGTAT-----CTTCC-------CC-----------CACA---------------------AGC..............................................................................................................................................................................................................................................................................................2411.001001000
..........................................................................................................................................................................................................................................................................................................AACTGTT---TTCTGCATCAA-G....................................................................................................1911.001001000
droWil2
A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TATGTACCCA-TAGAGAAAGAGTATCGCGAATTCGACT--------TGAGAC--------------------------------------C---AACACAAA------ATG--------------------AAGCACATTGTTAACTGTCAACTCTGAACTGTACATA--T----------------GTAGTTATGTATTT-AAA------AAGAAATACTTATATTTAAGCACTTATGTAATTTAAATGTCT----------TTGTAAATTTATAT--AC---------------GCAATTGCT--------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................ACT--------TGAGAC--------------------------------------C---AACACAAA------ATG--------------------A.................................................................................................................................................................................................................................................................................................2212.002000000000000000000000000000000000002000000000000000000000000000
..............................................................................................................................................TAACTGTCAACTCTGAACT....................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.....................GTATCGCGAATTCGACT--------TGA....................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................CTCTGAACTGTACATA--T----------------GT........................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
...................GAGTATCGCGAATTCGACT--------TGAGAC--------------------------------------C---.......................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................AACACAAA------ATG--------------------AAGCACATTGTTAACT..................................................................................................................................................................................................................................................................................2711.001000000000000001000000000000000000000000000000000000000000000000
...........................................................................................................................................TGTTAACTGTCAACTCTGAACTGTA.................................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
................................................AGAC--------------------------------------C---AACACAAA------ATG--------------------AAGCAC............................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................AACACAAA------ATG--------------------AAGCACATT.........................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................GTAATTTAAATGTCT----------TTGTAAAT......................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
............................GAATTCGACT--------TGAGAC--------------------------------------C---AACAC..................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
droGri2
TATGTATCTA-T-----------A---------TCAAT--------AGAGAATCG-GATCATCGAT------------------------A---AC-----------GAAA----------------------GCG-AGCGTGTATTGTAAACTGTAAACTGTACATA--T----------------GTAGTTATGTATTTTAT---------------------------CATAATTCTAATTATTATTATCATAAATGCACTTGTATA----------ATTTATTCATAATTATGATAATGTGTGTGTTCGCATCAA-CTGTGTC---ATAAGTTAATGAAC---ATGAATAACATCCGTA---GACCTCCTC--------------------------CACAT----ACATA----GTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................................................................................................................................................................................................................................................................................................................................................TAACATCCGTA---GACCTCCTC--------------------------CACA................2411.00110
......................................................................................................................................................................................................................................................................................................ATGATAATGTGTGTGTTCG............................................................................................................1911.00110

Generated: 05/18/2015 at 10:05 AM