ID:

dsi_3988

 Coordinate:

2r:13532242-13532507 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.6 -22.1 -22.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GTTCTCCAAAGATAAAATACCGTCAAGTATTATTCAACGGCAATCGTCGCGTGCGTTTTAACCAAATATACATCAAATCGAAAATTACCTGGAAAAACGGTCGAGAAAAGTGAATTTTAGTTTTTGGAAAAGAAGAAATTCCAAAAGCAAGCAGCAGTTTTAAAAAGTAAATATGACTTGTTATTTGAAACATTTTCTTGGCGGAGAACACTATATAACTATATTGGTTTCGGCAGTTATTTTTATATTTCTTAGAGGGCGCAAAATAACACTTTATGCATTCGTTTTTACAAGAAATTTGTAAACCCTGTAGAAATAAAACCCTTTTATTTAAAAAAAATATAATTGTGCAAACAGCATAAGTGT
***************************************************************************************************((((((((((..........((((((((((.........))))))))))........((((((((((((.......))))....)))))))).))))))))))..****************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M025
embryo
 M053
female body
 M024
male body		 O001
Testis
 M023
head
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
.....................................................................................................................TAGTTTTTGGAATAAGAGAAATT.................................................................................................................................................................................................................................. 23 3 1 4.00 4 4 0 0 0 0 0 0 0 0 0
............................ATTATTCAACGGCAATCGTCGCGT.......................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................TTCAACGGCAATCGTCGCGTGC........................................................................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....TCCAAAGATAAAATACCG........................................................................................................................................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...CTCCAAAGATAAAATACC......................................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...................................AACGGCAATCGTCGCGTGCGT...................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................AAGAAATTTCTAAACCCT......................................................... 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................GCAAGCAGCAGTTTTAAAAAAGATA................................................................................................................................................................................................... 25 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................TATTCAACGGCAATCGTCGCGTGCGT...................................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GAAACATTTTCTTGGCGG.................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................GTCGAGAAAAGTGAATTTTAGTTTTT................................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................TAGTTTTTGGAAAAGAAGAAATTCCAAAA............................................................................................................................................................................................................................ 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................CAACGGCAATCGTCGCGTGCGT...................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................CAACGGCAATCGTCGCGTGC........................................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................AAGTAGATTGGTTTCGACAGT................................................................................................................................. 21 3 5 0.40 2 0 0 0 0 0 2 0 0 0 0
..........................................................................................GGAAAGACGGTCGAG..................................................................................................................................................................................................................................................................... 15 1 5 0.20 1 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................................................................................................TCTAACTCTTTTATTTAAAAAAA........................... 23 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0
....................................................................................................TTGAGAAAAGTGAATT.......................................................................................................................................................................................................................................................... 16 1 13 0.08 1 0 0 0 0 0 0 0 0 0 1
.....CAAAAGATAAAATACCGGTA..................................................................................................................................................................................................................................................................................................................................................... 20 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................GTACATCTGACTTGTTA....................................................................................................................................................................................... 17 2 16 0.06 1 0 0 0 0 0 0 0 1 0 0
...................................................TCCGTTTTAACCAAA............................................................................................................................................................................................................................................................................................................ 15 1 19 0.05 1 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................................................................TTTTAGAGGGAGCAAAA.................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

CAAGAGGTTTCTATTTTATGGCAGTTCATAATAAGTTGCCGTTAGCAGCGCACGCAAAATTGGTTTATATGTAGTTTAGCTTTTAATGGACCTTTTTGCCAGCTCTTTTCACTTAAAATCAAAAACCTTTTCTTCTTTAAGGTTTTCGTTCGTCGTCAAAATTTTTCATTTATACTGAACAATAAACTTTGTAAAAGAACCGCCTCTTGTGATATATTGATATAACCAAAGCCGTCAATAAAAATATAAAGAATCTCCCGCGTTTTATTGTGAAATACGTAAGCAAAAATGTTCTTTAAACATTTGGGACATCTTTATTTTGGGAAAATAAATTTTTTTTATATTAACACGTTTGTCGTATTCACA
******************************************************************************************************************************************************************((((((((((..........((((((((((.........))))))))))........((((((((((((.......))))....)))))))).))))))))))..*************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
..........................................TAGCAGCGCAGGCAA..................................................................................................................................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................................................................................................................GGAAAATAGATTTTTT............................ 16 1 7 0.14 1 0 0 1 0 0 0 0
.............................................................................................TTTTGCCTGCTATTGTCACTTAAA......................................................................................................................................................................................................................................................... 24 3 8 0.13 1 0 1 0 0 0 0 0
.AAGAGGTTTCTATTTTATAT......................................................................................................................................................................................................................................................................................................................................................... 20 2 10 0.10 1 1 0 0 0 0 0 0
............................GTATAAGTTGCCATTAGCA............................................................................................................................................................................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 0 2 0
...............................................................................................................................TATTCTTCTTTAGGTTTTTCGT......................................................................................................................................................................................................................... 22 3 12 0.08 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................CCGCGTGTTATTGTG.............................................................................................. 15 1 12 0.08 1 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................................................CCGGGTGTTATTGTGAAA........................................................................................... 18 2 13 0.08 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................TTATTTTGGGACAAGGAATT................................ 20 3 17 0.06 1 0 0 0 0 0 0 1
......................................CCATTAGCAGCGCAAG........................................................................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 1 0 0 0 0 0 0
................................................CGCACGCGAGATTGGT.............................................................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................CCGGGTTTTATTGTG.............................................................................................. 15 1 20 0.05 1 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:13532192-13532557 + dsi_3988 GTTCTCCAAA--------------------GAT-AAAATACCGTCAAGTAT-TATTCA----------------ACG--GCAATCGTCGCGTGCGTTTTAACCAA----------ATAT--ACA--------------------------------TCAAATCGA------AAATTACCTGGA-AAAACGGTC----GAGAAAAGTGAATTTTAG---TTTTTGGAAAAGAAGAAATTCCAAAAGCAAGCAGCAG----------TTTT-----------------A-AAAAG---TAAATATGACT---TG-TTATTT-----------------------------------------------------------------------------------------GAA-ACATTTTCTTGGCGGAG-AACACTATATAACTATATTGGT---------------------------TTCGGCAGTTATT-----------------------------------------------TTTATATTTCTTAGA-------------------------------GGGCGCAAAATAACACTTTAT----------------------------------------------------------------------------------------------------GCATTCGTTTTTACAA---------------------------------------GAAATT-----------------TGTAAACCCTGTAGAAATAAAACCCTTTTATTTAAAAAAAATATAATTG------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------G----CAAACAGCATAA----GTGT-
droSec2 scaffold_1:10370084-10370423 + GTTCTCCAAA--------------------GAT-AAAATACCGTCAAGTAG-TATTCA----------------ACG--GCAATCGTCGCGTGCGTTTTAACCAA----------ATAT--ACT--------------------------------TCAAATCGA------ACATTACCTGGA-AAAACGGTC----GAGAAAAGTGAATTTTAG---TTTTTGGAAAAGAAGAAATTCCAAAAGCAAGCAGCAG----------TTTT-----------------A-AAAAG---TAAATATGACC---TG-TTATTT-----------------------------------------------------------------------------------------GAA-ACATTTTCTTGGCGGAG-AACACTATATAACTATATTGGT---------------------------TTCGGCAGTTATT-----------------------------------------------TTTATATTTCTTAGA-------------------------------GGGC-------------TTAT----------------------------------------------------------------------------------------------------GCATTCGTTTTTAGAA---------------------------------------GAAATT-----------------TTCAAA-------------AAACCCTTTTATTTAAAATAAATATAAATG------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------G----CAAACAGCATAA----GTGT-
dm3 chr2R:12861464-12861815 + GTTCTCCAAA--------------------GAT-AAAATACCGTCAAGTAT-TAGGCA----------------ACG--GCAATCGTCGCGTGCGTTTTAACCAA----------ATAT--ACT--------------------------------TAAAATCGA------AAATTACCTGGA-AAAACGGTC----GAGAAAAGTGAATTTTAG---TTTTTGGAAAAGAAGAAATTCCAAAAGCAAGCAGCAG----------TTTT-----------------A-AAAAG---TAAATATGATT---TG-TTATTT-----------------------------------------------------------------------------------------GAA-ACATTTTCTTGGCGAAG-AACACTAAACAACTATATTGGT---------------------------TTCGGCAGTTATA-----------------------------------------------TTTATATTTTTTAAA-------------------------------GGGCGCAAAATAACACTTTAT----------------------------------------------------------------------------------------------------GCATTTGTTTTTACAA---------------------------------------GAAATG-----------------CTCGAA---------------AACATTTTATTTAAAATAGA--------T----------------------------------------------------------------------------------------------------------------------------------------------------------------GTATTCTCCG----CAAGCAGAATAA----GTGA-
droEre2 scaffold_4845:12981964-12982423 - GTTCTCCAAA--------------------GAT-AACATACCGTCA-GTAT-TAGGCA----------------ACG--GCAATCGTCGCGTGCGTTTTAACCAA----------ATAA--------------------------------------AAAATCGA------AAATTACCTG-A-AAAACGGTT----GAAAAAAGTGAATTTTAA---GTTTTGGAAAAGAAGAAATTCCAAAGGCGAGGAGCAG----------TTAT-----------------A-AAAAG---TAAATATGACT---AG-TTATTT-----------------------------------------------------------------------------------------GAA-ACATTTTCTTGGCGGAG-AACAAAATATAACTAT---------GAA---------------------------ACTTCTAAAATTTCTTGA------------------------ATTTATATTTTATTTATATTTGTTTAA-------------------------------GCCCGCAAAATATCTATTTATACAAAGCAATGGATTTTATTTAAGTCTTCATTATTGCTGTAAGGACACAATTTGTATTTATTTAAAAATGAATTTAGGTTTTTCAAGCTTAAACCAGATTTT--------------------------------------------------------------AACCCTACGTAATGGTTGAA---------------AACCTTTTATTAAAAATATT--------T----------------------------------------------------------------------------------------------------------------------------------------------------------------GCATTTTATACA---AAACAGAATAAGCTAGTAGT
droYak3 2R:18605924-18606356 - GTTCTCCAAA--------------------GAT-AACATACCGTCAAGTAT-TAGGCA----------------ACG--GCAATCGTCGCGTGCGTTTTAACCAA----------ATAT--------------------------------------TAAATCGA------AAATCACCTGGA-AAAACGGTT----GAGAAAAGTGAATTTTAA---GTTTTGGAAAAGAAGAAATTCCAAAAGCAAGCAGCAG----------TTAT-----------------T-AAAAG---TAAATATGACA---AG-TTATTT-----------------------------------------------------------------------------------------GAA-ACATTTTATAGGCGGAG-AACACTATATAAGTACATTGGT---------------------------TTCGACAGTTATA-----------------------------------------------CTTTAATATCATAAAAAAACTACCTCTTATACATGTTTATTTTTAAACGCCCAAAATGTTTATTTATACAAAGCAAAGGATTTCATTTAAGTGT-------------------------TGCATTTATTGAAATTTTAATTTAGGTTCTTCAATATGAAAAAAGTGTTT-------------------------------------------------------------------------------------------------AACCTTTTATTTAAAATATT--------A----------------------------------------------------------------------------------------------------------------------------------------------------------------GCATTCTCTACA---AAACAAAATACATTAGTGG-
droEug1 scf7180000409672:2259457-2259644 - GTTCTCTAAG--------------A--A--AATAAATATCCCGTCAAGTAT-CTACCA----------------ACG--GCAATCGTCGCGTGCGTTTTCAAAAA----------ATAA--AA--------------G-----------CAAATTTTTAAATTGA------AAATCACCTGGA-AAAACGATT----AAGCAAAGTGAATTTTAA---TTTGTGAAAAATCACAAATTACAAAAGCAAGCCGCAG----------TTAT-----------------AGAAAAG---TAAATATGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301506:2302799-2302982 + GTTCTCCAGA--------------------GA--AACATCCCGTCAAGTAT-CTACCA----------------ACA--GCAATCGTCGCGTGCGTTCTAAAGA-----------GTTT--GAT---------------------------------CCAATCGA------AAATCACCCGAAAAAAGCGGTC----AAGCGGAGTGAATT--------------------AGTAGTTCAGAAAGCGAGAAGCAT----------TCGA-----------------AAAACAG---TAAATATTACAAACTATTTATTA-----------------------------------------------------------------------------------------AAA-ATACTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415346:362915-363125 - GTTCTCCAGA--------------------GA--AATATCCCGTCAAGTAT-CTACCA----------------ACG--GCAATCGTCGCGTGCGTTTAAAA-AA----------ATAT--ATT--------------------------------TCAAGTCGA------AAATCACCTGGA-AAAACGGTC----GAGCAAAGTGAAATTTAA---TTTTTGGAAAATCACAACTTCCAAAAACAAGAAGCAG----------TTAT-----------------A-AAAAG---TAAATATTACAAACCGTTTATTT-----------------------------------------------------------------------------------------AAA-ACATTTCTTATAAGGAG-AAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491214:1481952-1482175 - GTTCTCCAAA--------------------GA--AATCTAACGAA----AT-CTGCCA----------------ACG--GCAATCGTCGCGTGCGTTTTTAA-------------ATAT--TTT--------------------------------TCAAATCGA------AAATCCCCTTAA-AAAACGGTC----GAGCTAAGTGACTTTTAA---TTTTTGGAATATCACAAATTCCAAAAGCAAGCAGCAG----------CT-A-----------------A-AAAAG---TAAATATGACAAACTT-ATATTG-----------------------------------------------------------------------------------------AAAAACATTTTA-ATGCAATA-AACACGTTCGGAATATATTGGT---------------------------TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000780084:464553-465019 - GTTCTCCAAA--------------------GA--AATCTCCCGGAAAGTAT-TTACCA----------------ACG--GCCATCGTCGCGTGCGTTTTCAA-------------ATAT--TTT--------------------------------CCAAATCGC------AAATCACCTTTT-AAAACGGTC----TAGCAAAGTGAATTTTAA---TTTTTGGAATTTCACAAATTCCAAAAGCAAGCAGCAG----------TA-A-----------------A-AAATG---TAAATATGCCGAATTT-ATATTA-----------------------------------------------------------------------------------------GAT-ACATTTTTAAGGGGATA-AACACACTCGAATTG---------AAAACCAGAGTTCAGTTGCATGCGATTCGT-----------------------------------------------------------------------------------------TATTCTTTTTAAAGGACCATAATCT----------AAACCAAAGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------AATAATATAA---------------ACTCTTCGATTTAAAAAAGA--------TGTTGTTTCCAACAACAAGATTAATTACGATCACCAAAAAAAATGTTTTAGTAAGAAATATTTATTTAAAATTCATTGAAACTATAAAAAATTTAATAAAATTTTTAATATGTGAAAAT------TCAAGGGCCTGCATTATTTTAGGCTCAAAAGTA--------------------------------------
droFic1 scf7180000453948:2566320-2566758 - GTTCTCCAAA--------------------GA--AATCTCCCGTCAAGAGTTTTACCA----------------ACG--GCCAACGTCGCGTGCGTTTGAAACAA----------GTTT-------------------------------------ATATATCGA------AATTGAC----A-AAAGCGGTT----AAGCAAAGTGTATT-----------------AACACAAATTCCAACAGCCAGCAGCAG----------TT-------------------A-AAAAG---TAAATATCTTAAACCACAAAATTACTGCATTTTAACACACTACAAATTAAAGAAACAATAACTTTAAGTCTTTCCTTATTTTCAAAAATTTGATTTACAAGACAAA------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGTTTTTTAACATCTTTGAATTTT--------------------------------------------------------------------------------------------------------------------------------AACTTGTTTAAGTTACATAAATGGTGTGTGTGCTTCATATTTAAATTGTGAATTTTGTAACCCTACTC------------------------------------A------------------------------------------------------AAAAATGTT--------------------------------------------------------TTTATCAAGCGAAAATTTTAAATTAAGGACCTTTATTGATATAGTCCCGGAAATATTCGT-------ACAGTCAAACAGAATAATTTGGTCG-
droKik1 scf7180000302470:1292987-1293191 + GTTCTCCAAA-----------------AAAGA--AATCTTCCGTGTATTAT-CCTCCA---G------------TCG--AAAATCGTCGCGTGCGTTCTCAGAAA----------GTTT----T------------TG------------------AAAATTCGAGAAAAAAAACCACCTTGACAAAACGGTC----CACCAAAGTGAATATTAGGGTTTTTTGGAAAATCACAAATTCCAAAATCCAGCCA-------------TT-G-----------------A-AAATG---TAAATATGCGATAGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTATTTAAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13266:13735342-13735663 - GTTCTTCAAA--------------------CA--ACACT--------------CGCAA----------------ATC--GTAATCGTCGCGTGCGTTCAAAG-----TTTTTGGAAAGT--TTT--------------------------------TGAAATCGA------AAAACGCTATTA-AAAA------------CAAAGTGAATAAACA---CTTTTGGAGAAAAACAAAATCCAAAAGTCATCTAAAT----------TT-G-----------------A-AAAAG---TAAATATATATAACAA-GTATTT-----------------------------------------------------------------------------------------TAA-ACATTTTTGATTACACAAAAGAC--T---------TTAGTTTACAA---------------------------ACTCAA-----------------------------------------------------ATTTATAAAA-------------------------------ACTTGTGAAAAAACTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTAAAAA-----------TTATTTTTCAGGCAAAAAAATTTGTTCTTA------------------------TAAATTTTTATTCAGAATTTA-----------------------------------------------------------------AATTTCCGTT-------------------------------TAAAAT----TTCT-
droBip1 scf7180000396759:2402357-2402676 + GTTCTTCAAA--------------------TA--AAAGT--------------CGAAA----------------ATC--GCAATCGTCGCGTGCGTTCAGAG----GTTTTTGGAAAGT--TTT--------------------------------TGAAATCGA-------------------AAAACGGTATTAAAAACAAAGTGAATAAACA---CTTTTGGAGAATCACAAAATCCAAAAGTCATCTAAAT----------TT-G-----------------A-AAAAG---TAAATATATAAAACAA-GTATTT-----------------------------------------------------------------------------------------TAA-ATATTTTTGATTCAACAAAAGAC--T---------TTAGTTAAGAA---------------------------ACTTAAAAAATATAA--AAACAGAAAGTGCTAGCAAAAGTAG------------TTTATATTTTTCATA-------------------------------ATGT------------------------------------------------------------------------------------------------------------ATATCCTGTGTAGCTATTTCTATCT---------------------------------------AAAATT-----------------TAT--------------------------ATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------AAT---------------------------------TCTAAA----CTCT-
dp5 3:6826886-6827032 + GTTCTCCAAA--------------------AG----TCCCCCGTGAAC----TATCCA----------------AAG--GAAATCGTCGCGTGCGTTCCATC----AGTAGTTGA---TTT--T------------CAAAGATTTAAGGCCGATAA----------------------------------GTG----CACAAAAGTGAATA---------------------------CAAAAAACAGGAA----ATCGAAGCAGCTTC-----------------AAAAAAG---TAAATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_2:7034204-7034350 + GTTCTCCAAA--------------------AG----TCCCCCGTGAAC----TATCCA----------------AAG--GAAATCGTCGCGTGCGTTCCATC----AGTAGTTGA---TTT--T------------CAAAGATTTAAGTCCGATAA----------------------------------GTG----CACAAAAGTGAATA---------------------------CAAAAAACAGGAA----ATCGAAGCAGCTTC-----------------AAAAAAG---TAAATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004512:7031-7219 + GTTCTCCTAACTGAAAACAGAGCGAAAACAAA--AATTTTACAAAAAAAAA-CCA-------------------TCAAAACTTGCGTTACGTGCGTTTTAAATAAAAGTCGTGGA---GTA-AT-TA------------------------------------------------------A----------A----AATAAAAGTG-------------------------------TTAAAAAAACACAGCAACTTGAAGCAGAAATAAGCTTAAACAACACAAAAAAAAG---TAAATATATATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAAA----ATTT-
droVir3 scaffold_12875:6160371-6160630 + GTTCTTCTAA--------------------AT--AACCA-------------------AAACCCGATAATACCATCAACAAATTCGTTGCGTGCGTTTGAAC----AGTTTTGAAACTG--TG---------------------------CTAAAA----------------------------------GTG----TA----------------------------------AAAAACTAAAAGCAAACAAAAA----------TAAT-----------------A-AAAACAGTTGAATTAAATT---TG---------------------------------------------------------------------------------CGAGAAAAAAATTCTTGG-AAATT--TTTGCCGAAG-CTCTTTAAGTAAATATACAAAT---------------------------TTTA-------------------------------------------------------------------------------------------------------------TGATATCAAACTGT----------------------------------------------------------------------------------------------------ACATTTATTTTGTTTG-----------------------------------------------------------GTTCGT------------------------------TAAAAAAGTATATTTG------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------G----ATA----TTTTC----ATGT-
droMoj3 scaffold_6496:23876420-23876600 - GTTCTTCTCT--------------------CAA-AAC-------------------CAAAAGCC----------TCGACAAATTCGTCTCGTGCGTTCGAAC----AG--------TTT--AAA--------------------------------TCGTATCAA------AGTCTTTTTGAA-ACAGTGCT--------AAAAGTGC--------------------AAAACAAACTCAAAAAATAAGAAAAAC----------T-AT-----------------A-AAAACATTTGAATATAAAC---TGTTTGGAA----------------------------------------------------------------------------------AAATTCTGGG-AAATTTTTTCGGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15112:1053963-1054118 + GTTCTTCTTG--------------------AAT-ACC---CA----------------AAACCCGATA------ATA--AATTGCGTATCGTGCGTTCCAAC----AGTTTCTGA---TTG--TTTAAATCGAACACAAAAAGTCTTCTTCAATTC----------------------------------GTG----CTAAAAAGTGAT----------------------AGACAAACCAAAATCAACCCA------TAAACAATTTT-----------------TAAAAAT---TAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GTTCTCCAAA--------------------GAT-AAAATACCGTCAAGTAT-TATTCA----------------ACG--GCAATCGTCGCGTGCGTTTTAACCAA----------ATAT--ACA--------------------------------TCAAATCGA------AAATTACCTGGA-AAAACGGTC----GAGAAAAGTGAATTTTAG---TTTTTGGAAAAGAAGAAATTCCAAAAGCAAGCAGCAG----------TTTT-----------------A-AAAAG---TAAATATGACT---TG-TTATTT-----------------------------------------------------------------------------------------GAA-ACATTTTCTTGGCGGAG-AACACTATATAACTATATTGGT---------------------------TTCGGCAGTTATT-----------------------------------------------TTTATATTTCTTAGA-------------------------------GGGCGCAAAATAACACTTTAT----------------------------------------------------------------------------------------------------GCATTCGTTTTTACAA---------------------------------------GAAATT-----------------TGTAAACCCTGTAGAAATAAAACCCTTTTATTTAAAAAAAATATAATTG------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------G----CAAACAGCATAA----GTGT-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................AT-TATTCA----------------ACG--GCAATCGTCGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
......................................................TTCA----------------ACG--GCAATCGTCGCGTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
....TCCAAA--------------------GAT-AAAATACCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
...CTCCAAA--------------------GAT-AAAATACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
.........................................................A----------------ACG--GCAATCGTCGCGTGCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
....................................................TATTCA----------------ACG--GCAATCGTCGCGTGCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................GAA-ACATTTTCTTGGCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
..............................................................................................................................................................................................GTC----GAGAAAAGTGAATTTTAG---TTTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
....................................................................................................................................................................................................................TAG---TTTTTGGAAAAGAAGAAATTCCAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100010000000000000
........................................................CA----------------ACG--GCAATCGTCGCGTGCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
........................................................CA----------------ACG--GCAATCGTCGCGTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000100000
droSec2
GTTCTCCAAA--------------------GAT-AAAATACCGTCAAGTAG-TATTCA----------------ACG--GCAATCGTCGCGTGCGTTTTAACCAA----------ATAT--ACT--------------------------------TCAAATCGA------ACATTACCTGGA-AAAACGGTC----GAGAAAAGTGAATTTTAG---TTTTTGGAAAAGAAGAAATTCCAAAAGCAAGCAGCAG----------TTTT-----------------A-AAAAG---TAAATATGACC---TG-TTATTT-----------------------------------------------------------------------------------------GAA-ACATTTTCTTGGCGGAG-AACACTATATAACTATATTGGT---------------------------TTCGGCAGTTATT-----------------------------------------------TTTATATTTCTTAGA-------------------------------GGGC-------------TTAT----------------------------------------------------------------------------------------------------GCATTCGTTTTTAGAA---------------------------------------GAAATT-----------------TTCAAA-------------AAACCCTTTTATTTAAAATAAATATAAATG------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------G----CAAACAGCATAA----GTGT-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................GTGCGTTTTAACCAA----------ATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020002
..................................................................................................................................................................................................................TTTAG---TTTTTGGAAAAGAAGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
.....................................................ATTCA----------------ACG--GCAATCGTCGCGTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
dm3
GTTCTCCAAA--------------------GAT-AAAATACCGTCAAGTAT-TAGGCA----------------ACG--GCAATCGTCGCGTGCGTTTTAACCAA----------ATAT--ACT--------------------------------TAAAATCGA------AAATTACCTGGA-AAAACGGTC----GAGAAAAGTGAATTTTAG---TTTTTGGAAAAGAAGAAATTCCAAAAGCAAGCAGCAG----------TTTT-----------------A-AAAAG---TAAATATGATT---TG-TTATTT-----------------------------------------------------------------------------------------GAA-ACATTTTCTTGGCGAAG-AACACTAAACAACTATATTGGT---------------------------TTCGGCAGTTATA-----------------------------------------------TTTATATTTTTTAAA-------------------------------GGGCGCAAAATAACACTTTAT----------------------------------------------------------------------------------------------------GCATTTGTTTTTACAA---------------------------------------GAAATG-----------------CTCGAA---------------AACATTTTATTTAAAATAGA--------T----------------------------------------------------------------------------------------------------------------------------------------------------------------GTATTCTCCG----CAAGCAGAATAA----GTGA-SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................ATACCGTCAAGTAT-TAGGCA----------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................ATACCGTCAAGTAT-TAGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................ACCGTCAAGTAT-TAGGCA----------------A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................ATACCGTCAAGTAT-TAGGCA----------------AC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................ATACCGTCAAGTAT-TAGGCA----------------ACG--GC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................ATACCGTCAAGTAT-TAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................TTCCAAAAGCAAGCAGCGA----------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1931.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................AAAATACCGTCAAGTAT-TAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................ATACCGTCAAGTAT-TAGGCG----------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................TAACCAA----------ATAT--ACT--------------------------------TAAAATCGA------AAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTAAA-------------------------------GGGCGCAAAATAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.........................................................................................................................................................................................................................................AAATTCCAAAAGCAAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TACCGTCAAGTAT-TAGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TAT-TAGGCA----------------ACG--GCAATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
..............................GAT-AAAATACCGTCAAGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.................................................AT-TAGGCA----------------ACG--GCAATCGTCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..................................................T-TAGGCA----------------ACG--GCAATCGTCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TCCAAA--------------------GAT-AAAATACCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................ATTACCTGGA-AAAACGGTC----................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTTAAAATAGA--------T----------------------------------------------------------------------------------------------------------------------------------------------------------------GAG................................19160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GTTCTCCAAA--------------------GAT-AACATACCGTCA-GTAT-TAGGCA----------------ACG--GCAATCGTCGCGTGCGTTTTAACCAA----------ATAA--------------------------------------AAAATCGA------AAATTACCTG-A-AAAACGGTT----GAAAAAAGTGAATTTTAA---GTTTTGGAAAAGAAGAAATTCCAAAGGCGAGGAGCAG----------TTAT-----------------A-AAAAG---TAAATATGACT---AG-TTATTT-----------------------------------------------------------------------------------------GAA-ACATTTTCTTGGCGGAG-AACAAAATATAACTAT---------GAA---------------------------ACTTCTAAAATTTCTTGA------------------------ATTTATATTTTATTTATATTTGTTTAA-------------------------------GCCCGCAAAATATCTATTTATACAAAGCAATGGATTTTATTTAAGTCTTCATTATTGCTGTAAGGACACAATTTGTATTTATTTAAAAATGAATTTAGGTTTTTCAAGCTTAAACCAGATTTT--------------------------------------------------------------AACCCTACGTAATGGTTGAA---------------AACCTTTTATTAAAAATATT--------T----------------------------------------------------------------------------------------------------------------------------------------------------------------GCATTTTATACA---AAACAGAATAAGCTAGTAGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................AATTCCAAAGGCGAGGAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0021000100
...........................................................................................................................................................................................................................................ATTCCAAAGGCGAGGAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000110
...............................AT-AACATACCGTCA-GTAT-TAGGCA----------------ACG--G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
.................................................AT-TAGGCA----------------ACG--GCAATCGTCGCGTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
...................................................................................................................................................................................................................TTAA---GTTTTGGAAAAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001000
..................................................................................................................................................................................................................................AAAGAAGAAATTCCAAAGGCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
...................................................................................................................................................................................................................................................GGCGAGGAGCAG----------TTAT-----------------A-AAAAG---C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
..........................................GTCA-GTAT-TAGGCA----------------ACG--GC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000
...........................................................................................................................................................................................................................................ATTCCAAAGGCGAGGAGCAG----------C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
..........................................GTCA-GTAT-TAGGCA----------------ACG--GCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
..........................................................................................................................................................................................................AAGTGAATTTTAA---GTTTTGGAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
.............................................A-GTAT-TAGGCA----------------ACG--GCAATCGTCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
........................................................................................................................................................................................................AAAAGTGAATTTTAA---GTTTTGGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
..................................AACATACCGTCA-GTAT-TAGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
....TCCAAA--------------------GAT-AACATACCGTCA-GTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
..............................................................................................................................................................................................................................TGGAAAAGAAGAAATTCCAAAGGCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010
.................................................AT-TAGGCA----------------ACG--GCAATCGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTTAAAAATGAATTTAGGTTTTT....................................................................................................................................................................................................................................................................................................................................................2711.0010000010
....................................................TAGGCA----------------ACG--GCAATCGTCGCGTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
....................................CATACCGTCA-GTAT-TAGGCA----------------AC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
.....................................................................................................................................................................................................................AA---GTTTTGGAAAAGAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
............................................................................................................................................................................AATTACCTG-A-AAAACGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
...........................................TCA-GTAT-TAGGCA----------------ACG--GC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
...................................................................................................................................................................................................................TTAA---GTTTTGGAAAAGAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
droYak3
GTTCTCCAAA--------------------GAT-AACATACCGTCAAGTAT-TAGGCA----------------ACG--GCAATCGTCGCGTGCGTTTTAACCAA----------ATAT--------------------------------------TAAATCGA------AAATCACCTGGA-AAAACGGTT----GAGAAAAGTGAATTTTAA---GTTTTGGAAAAGAAGAAATTCCAAAAGCAAGCAGCAG----------TTAT-----------------T-AAAAG---TAAATATGACA---AG-TTATTT-----------------------------------------------------------------------------------------GAA-ACATTTTATAGGCGGAG-AACACTATATAAGTACATTGGT---------------------------TTCGACAGTTATA-----------------------------------------------CTTTAATATCATAAAAAAACTACCTCTTATACATGTTTATTTTTAAACGCCCAAAATGTTTATTTATACAAAGCAAAGGATTTCATTTAAGTGT-------------------------TGCATTTATTGAAATTTTAATTTAGGTTCTTCAATATGAAAAAAGTGTTT-------------------------------------------------------------------------------------------------AACCTTTTATTTAAAATATT--------A----------------------------------------------------------------------------------------------------------------------------------------------------------------GCATTCTCTACA---AAACAAAATACATTAGTGG-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................AT-TAGGCA----------------ACG--GCAATCGTCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
................................................................................................................................................................................................................ATTTTAA---GTTTTGGAAAAGAAGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
....................................................TAGGCA----------------ACG--GCAATCGTCGCGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
...................................................................................................................................................................................................................TTAA---GTTTTGGAAAAGAAGAAATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
..................................................................................................................................................................................CTGGA-AAAACGGTT----GAGAAAAGTGAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
.......................................................................................................................................................................................................GAAAAGTGAATTTTAA---GTTTTGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
.....................................................AGGCA----------------ACG--GCAATCGTCGCGTGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100001000000
droEug1
GTTCTCTAAG--------------A--A--AATAAATATCCCGTCAAGTAT-CTACCA----------------ACG--GCAATCGTCGCGTGCGTTTTCAAAAA----------ATAA--AA--------------G-----------CAAATTTTTAAATTGA------AAATCACCTGGA-AAAACGATT----AAGCAAAGTGAATTTTAA---TTTGTGAAAAATCACAAATTACAAAAGCAAGCCGCAG----------TTAT-----------------AGAAAAG---TAAATATGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GTTCTCCAGA--------------------GA--AACATCCCGTCAAGTAT-CTACCA----------------ACA--GCAATCGTCGCGTGCGTTCTAAAGA-----------GTTT--GAT---------------------------------CCAATCGA------AAATCACCCGAAAAAAGCGGTC----AAGCGGAGTGAATT--------------------AGTAGTTCAGAAAGCGAGAAGCAT----------TCGA-----------------AAAACAG---TAAATATTACAAACTATTTATTA-----------------------------------------------------------------------------------------AAA-ATACTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GTTCTCCAGA--------------------GA--AATATCCCGTCAAGTAT-CTACCA----------------ACG--GCAATCGTCGCGTGCGTTTAAAA-AA----------ATAT--ATT--------------------------------TCAAGTCGA------AAATCACCTGGA-AAAACGGTC----GAGCAAAGTGAAATTTAA---TTTTTGGAAAATCACAACTTCCAAAAACAAGAAGCAG----------TTAT-----------------A-AAAAG---TAAATATTACAAACCGTTTATTT-----------------------------------------------------------------------------------------AAA-ACATTTCTTATAAGGAG-AAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GTTCTCCAAA--------------------GA--AATCTAACGAA----AT-CTGCCA----------------ACG--GCAATCGTCGCGTGCGTTTTTAA-------------ATAT--TTT--------------------------------TCAAATCGA------AAATCCCCTTAA-AAAACGGTC----GAGCTAAGTGACTTTTAA---TTTTTGGAATATCACAAATTCCAAAAGCAAGCAGCAG----------CT-A-----------------A-AAAAG---TAAATATGACAAACTT-ATATTG-----------------------------------------------------------------------------------------AAAAACATTTTA-ATGCAATA-AACACGTTCGGAATATATTGGT---------------------------TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GTTCTCCAAA--------------------GA--AATCTCCCGGAAAGTAT-TTACCA----------------ACG--GCCATCGTCGCGTGCGTTTTCAA-------------ATAT--TTT--------------------------------CCAAATCGC------AAATCACCTTTT-AAAACGGTC----TAGCAAAGTGAATTTTAA---TTTTTGGAATTTCACAAATTCCAAAAGCAAGCAGCAG----------TA-A-----------------A-AAATG---TAAATATGCCGAATTT-ATATTA-----------------------------------------------------------------------------------------GAT-ACATTTTTAAGGGGATA-AACACACTCGAATTG---------AAAACCAGAGTTCAGTTGCATGCGATTCGT-----------------------------------------------------------------------------------------TATTCTTTTTAAAGGACCATAATCT----------AAACCAAAGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------AATAATATAA---------------ACTCTTCGATTTAAAAAAGA--------TGTTGTTTCCAACAACAAGATTAATTACGATCACCAAAAAAAATGTTTTAGTAAGAAATATTTATTTAAAATTCATTGAAACTATAAAAAATTTAATAAAATTTTTAATATGTGAAAAT------TCAAGGGCCTGCATTATTTTAGGCTCAAAAGTA--------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GTTCTCCAAA--------------------GA--AATCTCCCGTCAAGAGTTTTACCA----------------ACG--GCCAACGTCGCGTGCGTTTGAAACAA----------GTTT-------------------------------------ATATATCGA------AATTGAC----A-AAAGCGGTT----AAGCAAAGTGTATT-----------------AACACAAATTCCAACAGCCAGCAGCAG----------TT-------------------A-AAAAG---TAAATATCTTAAACCACAAAATTACTGCATTTTAACACACTACAAATTAAAGAAACAATAACTTTAAGTCTTTCCTTATTTTCAAAAATTTGATTTACAAGACAAA------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGTTTTTTAACATCTTTGAATTTT--------------------------------------------------------------------------------------------------------------------------------AACTTGTTTAAGTTACATAAATGGTGTGTGTGCTTCATATTTAAATTGTGAATTTTGTAACCCTACTC------------------------------------A------------------------------------------------------AAAAATGTT--------------------------------------------------------TTTATCAAGCGAAAATTTTAAATTAAGGACCTTTATTGATATAGTCCCGGAAATATTCGT-------ACAGTCAAACAGAATAATTTGGTCG-SizeHit CountTotal NormTotal
No Reads
droKik1
GTTCTCCAAA-----------------AAAGA--AATCTTCCGTGTATTAT-CCTCCA---G------------TCG--AAAATCGTCGCGTGCGTTCTCAGAAA----------GTTT----T------------TG------------------AAAATTCGAGAAAAAAAACCACCTTGACAAAACGGTC----CACCAAAGTGAATATTAGGGTTTTTTGGAAAATCACAAATTCCAAAATCCAGCCA-------------TT-G-----------------A-AAATG---TAAATATGCGATAGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTATTTAAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
GTTCTTCAAA--------------------CA--ACACT--------------CGCAA----------------ATC--GTAATCGTCGCGTGCGTTCAAAG-----TTTTTGGAAAGT--TTT--------------------------------TGAAATCGA------AAAACGCTATTA-AAAA------------CAAAGTGAATAAACA---CTTTTGGAGAAAAACAAAATCCAAAAGTCATCTAAAT----------TT-G-----------------A-AAAAG---TAAATATATATAACAA-GTATTT-----------------------------------------------------------------------------------------TAA-ACATTTTTGATTACACAAAAGAC--T---------TTAGTTTACAA---------------------------ACTCAA-----------------------------------------------------ATTTATAAAA-------------------------------ACTTGTGAAAAAACTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTAAAAA-----------TTATTTTTCAGGCAAAAAAATTTGTTCTTA------------------------TAAATTTTTATTCAGAATTTA-----------------------------------------------------------------AATTTCCGTT-------------------------------TAAAAT----TTCT-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................CT--------------CGCAA----------------ATC--GTAATCGTCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..............................CA--ACACT--------------CGCAA----------------ATC--GTAATCGTCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
...............................................................................GTAATCGTCGCGTGCGTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
...........................................................................................TGCGTTCAAAG-----TTTTTGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
..............................CA--ACACT--------------CGCAA----------------ATC--GTAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.............................................................................................................TTTGGAAAGT--TTT--------------------------------TGAAATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
........AA--------------------CA--ACACT--------------CGCAA----------------ATC--GTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...............................A--ACACT--------------CGCAA----------------ATC--GTAATCGTCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
................................................................................................................................................................ATCGA------AAAACGCTATTA-AAAA------------CAAAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
...................................................................................................................................................................................................................AACA---CTTTTGGAGAAAAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
droBip1
GTTCTTCAAA--------------------TA--AAAGT--------------CGAAA----------------ATC--GCAATCGTCGCGTGCGTTCAGAG----GTTTTTGGAAAGT--TTT--------------------------------TGAAATCGA-------------------AAAACGGTATTAAAAACAAAGTGAATAAACA---CTTTTGGAGAATCACAAAATCCAAAAGTCATCTAAAT----------TT-G-----------------A-AAAAG---TAAATATATAAAACAA-GTATTT-----------------------------------------------------------------------------------------TAA-ATATTTTTGATTCAACAAAAGAC--T---------TTAGTTAAGAA---------------------------ACTTAAAAAATATAA--AAACAGAAAGTGCTAGCAAAAGTAG------------TTTATATTTTTCATA-------------------------------ATGT------------------------------------------------------------------------------------------------------------ATATCCTGTGTAGCTATTTCTATCT---------------------------------------AAAATT-----------------TAT--------------------------ATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------AAT---------------------------------TCTAAA----CTCT-SizeHit CountTotal NormTotal
No Reads
dp5
GTTCTCCAAA--------------------AG----TCCCCCGTGAAC----TATCCA----------------AAG--GAAATCGTCGCGTGCGTTCCATC----AGTAGTTGA---TTT--T------------CAAAGATTTAAGGCCGATAA----------------------------------GTG----CACAAAAGTGAATA---------------------------CAAAAAACAGGAA----ATCGAAGCAGCTTC-----------------AAAAAAG---TAAATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................CCA----------------AAG--GAAATCGTCGCGTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
.................................................................................................................................................................................................................................................AAAACAGGAA----ATCGAAGCAGCTTC-----------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
droPer2
GTTCTCCAAA--------------------AG----TCCCCCGTGAAC----TATCCA----------------AAG--GAAATCGTCGCGTGCGTTCCATC----AGTAGTTGA---TTT--T------------CAAAGATTTAAGTCCGATAA----------------------------------GTG----CACAAAAGTGAATA---------------------------CAAAAAACAGGAA----ATCGAAGCAGCTTC-----------------AAAAAAG---TAAATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................ATCCA----------------AAG--GAAATCGTCGCGTGCGTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..............................................................................................................................................................................................................GAATA---------------------------CAAAAAACAGGAA----ATCGAAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
droWil2
GTTCTCCTAACTGAAAACAGAGCGAAAACAAA--AATTTTACAAAAAAAAA-CCA-------------------TCAAAACTTGCGTTACGTGCGTTTTAAATAAAAGTCGTGGA---GTA-AT-TA------------------------------------------------------A----------A----AATAAAAGTG-------------------------------TTAAAAAAACACAGCAACTTGAAGCAGAAATAAGCTTAAACAACACAAAAAAAAG---TAAATATATATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAAA----ATTT-SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........ACTGAAAACAGAGCGAAAACAAA--AAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
...........TGAAAACAGAGCGAAAACAAA--...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
............GAAAACAGAGCGAAAACAAA--AAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
........AACTGAAAACAGAGCGAAAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
...........TGAAAACAGAGCGAAAACAAA--AATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
................................................................................................TTTAAATAAAAGTCGTGGA---...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
........AACTGAAAACAGAGCGAAAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001
....TCCTAACTGAAAACAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...........................................................................CAAAACTTGCGTTACGTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.................................................................................................TTAAATAAAAGTCGTGGA---GT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
droVir3
GTTCTTCTAA--------------------AT--AACCA-------------------AAACCCGATAATACCATCAACAAATTCGTTGCGTGCGTTTGAAC----AGTTTTGAAACTG--TG---------------------------CTAAAA----------------------------------GTG----TA----------------------------------AAAAACTAAAAGCAAACAAAAA----------TAAT-----------------A-AAAACAGTTGAATTAAATT---TG---------------------------------------------------------------------------------CGAGAAAAAAATTCTTGG-AAATT--TTTGCCGAAG-CTCTTTAAGTAAATATACAAAT---------------------------TTTA-------------------------------------------------------------------------------------------------------------TGATATCAAACTGT----------------------------------------------------------------------------------------------------ACATTTATTTTGTTTG-----------------------------------------------------------GTTCGT------------------------------TAAAAAAGTATATTTG------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------G----ATA----TTTTC----ATGT-SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.TTCTTCTAA--------------------AT--AACCA-------------------AAACCCGATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................TTTGAAC----AGTTTTGAAACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000010000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................AAA----------TAAT-----------------A-AAAACAGTTGAATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................AACAGTTGAATTAAATT---TG---------------------------------------------------------------------------------CGAGAAAAAAATTCTTGG-AA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3911.001000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................AAACAAAAA----------TAAT-----------------A-AAAACAGTTGAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................AAAAGCAAACAAAAA----------TAAT-----------------A-AA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
.......TAA--------------------AT--AACCA-------------------AAACCCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................AACAGTTGAATTAAATT---TG---------------------------------------------------------------------------------C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAAATTCTTGG-AAATT--..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
GTTCTTCTCT--------------------CAA-AAC-------------------CAAAAGCC----------TCGACAAATTCGTCTCGTGCGTTCGAAC----AG--------TTT--AAA--------------------------------TCGTATCAA------AGTCTTTTTGAA-ACAGTGCT--------AAAAGTGC--------------------AAAACAAACTCAAAAAATAAGAAAAAC----------T-AT-----------------A-AAAACATTTGAATATAAAC---TGTTTGGAA----------------------------------------------------------------------------------AAATTCTGGG-AAATTTTTTCGGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................GTTTGGAA----------------------------------------------------------------------------------AAATTCTGGG-AAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...................................AC-------------------CAAAAGCC----------TCGACAAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...........................................................................................................G--------TTT--AAA--------------------------------TCGTATCAA------AGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droGri2
GTTCTTCTTG--------------------AAT-ACC---CA----------------AAACCCGATA------ATA--AATTGCGTATCGTGCGTTCCAAC----AGTTTCTGA---TTG--TTTAAATCGAACACAAAAAGTCTTCTTCAATTC----------------------------------GTG----CTAAAAAGTGAT----------------------AGACAAACCAAAATCAACCCA------TAAACAATTTT-----------------TAAAAAT---TAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 01:02 PM