ID:

dsi_3985

 Coordinate:

3l:5495906-5496055 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.9

Flybase annnotation

Antisense to three_prime_UTR [3l_5496017_5496488_-]; Antisense to exon [3l_5496017_5498477_-]; three_prime_UTR [3l_5495856_5496317_+]; exon [3l_5494820_5496317_+]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
TAGACCCATCTTGCTAGCTTGGTTTTTTTAATTATAGAGTTTTTTTTTAGGTAATTATTCTTAATTGTAAACCATGAGGATCCTAATCCCTACACATAGATTTACTTCGTAAATATTTGGTTTATAAAATATTTTTAATTGACCATTTGTAAACAAGTTGCATTTATTCATAGAAGTTCGTTTAGGTTTCTATGTCATTTATACAAGGCCCTTCTGGGCCCACGTTTATTGATTTCTAAAAGAAAATAAA
*********************************************************************************************************************************.(((((((..(((.....(((((.....))))).....))))))))))............************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 M053
female body
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
........................................................................................................................................................................CATAGAAGTTCGTTTAGGTTT............................................................. 21 0 1 25.00 25 24 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ATTTATACAAGGCCCTTCTGG................................. 21 0 1 7.00 7 2 5 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TCATAGAAGTTCGTTTAGGTT.............................................................. 21 0 1 7.00 7 7 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CGTTTATTGATTTCTAAAAGA....... 21 0 1 4.00 4 1 3 0 0 0 0 0 0 0 0
.................................................................................................................................................................ATTTATTCATAGAAGTTCGTT.................................................................... 21 0 1 4.00 4 0 0 2 0 2 0 0 0 0 0
...................................................................................................................................................................................................................TTCTGGGCCCACGTTTATTGA.................. 21 0 1 4.00 4 1 0 0 3 0 0 0 0 0 0
...................................................................................................................................................................TTATTCATAGAAGGTCGTTTT.................................................................. 21 2 1 3.00 3 0 3 0 0 0 0 0 0 0 0
..................................................................................................................................................................TTTATTCATAGAAGTTCGTTT................................................................... 21 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0
......................................................................................................................................................................TTCATAGAAGTTCGTTTAGGTTT............................................................. 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TTTCTATGTCATTTATACAAGGC......................................... 23 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0
..........................................................................................................................................................................................TTTCTATGTCATTTATACAAGG.......................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TATTCATAGAAGTTCGTTTAGG................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TTTATTCATAGAAGTTCGTTTAGGTT.............................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TAGGTTTCTATGTCATTTATA............................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TCATAGAAGTTCGTTTAG................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TTTATTGATTTCTAAAAGAA...... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TCATAGAAGTTCGTTTAGGTTT............................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATAGAAGTTCGTTTAGGTTTC............................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................TATTTTTAATTGACCATTTGT.................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................TTAATTGACCATTTGTAAACAAGT............................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................CATTTATTCATAGAAGTTCGT..................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................TGCATTTATTCATAGAAGTTCGTTT................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................GTTCGTTTAGGTTTCTATG........................................................ 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................CCACGTTTATTGATTTCTAAA.......... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TTATACAAGGCCCTTCTGG................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................TTCATAGAAGTTCGTTTAGAT............................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................TCATATAAGTTCGTTTAGGTTT............................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TTATTGATTTCTAAAAGAAAA.... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................AAGTTCGTTTAGGTTTCTATG........................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................TATTTTTAATTGACCATTTGTAAACAAGT............................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TTGTAAACAAGTTGCATTTATTCATA.............................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................TTATTCATAGAAGTTCGTTTAGGTTTCT........................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CAAGTTGCATTTGTTCATAG............................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................TTCATAGAAGTTCGTTTAGGTT.............................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................AAGTTGCATTTATTCATAGAA........................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATAGAAGTTCGTTTAGGTTTCT........................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................TCTATGTCATTTATACAAGGC......................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................TCCCTACACATAGATTTACTTCGTA........................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................TTAATTGACCATTTGTAAACA............................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................TATTGATTTCTAAAAGAAAAT... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TTGATTTCTAAAAGAAAAT... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................TATTCATAGAAGGTCGTTT................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CCACGTTTATTGATTTCTA............ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................TTGACCATTTGTAAACAAGTTGCA........................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................ATTGACCATTTGTAAACAAGT............................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........TGCTAGCTTGCTTTTTTTTACT......................................................................................................................................................................................................................... 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CAAGTTGCATTTTTTCA................................................................................ 17 1 5 0.20 1 0 0 0 0 0 0 0 0 0 1
...........................................TCTTTAGTTAGTTATTCTTAATT........................................................................................................................................................................................ 23 3 8 0.13 1 0 0 0 0 0 1 0 0 0 0
.........................................................................................................TTCGTAAATATTAGG.................................................................................................................................. 15 1 16 0.06 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

-----------------------------------------------------------------------------------------------------------------------------------------------------------------#########################################################################################
ATCTGGGTAGAACGATCGAACCAAAAAAATTAATATCTCAAAAAAAAATCCATTAATAAGAATTAACATTTGGTACTCCTAGGATTAGGGATGTGTATCTAAATGAAGCATTTATAAACCAAATATTTTATAAAAATTAACTGGTAAACATTTGTTCAACGTAAATAAGTATCTTCAAGCAAATCCAAAGATACAGTAAATATGTTCCGGGAAGACCCGGGTGCAAATAACTAAAGATTTTCTTTTATTT
*************************************************************.(((((((..(((.....(((((.....))))).....))))))))))............********************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 M053
female body
 GSM343915
embryo
 M023
head
 M024
male body		 SRR553488
RT_0-2 hours eggs
.............................................................................................................................................................................TTCAAGCAAATCCAAAGATAC........................................................ 21 0 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GGGAAGACCCGGGTGCAAATA..................... 21 0 1 5.00 5 2 2 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TCAAGCAAATCCAAAGATACA....................................................... 21 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GGGAAGACCCGGGTGCAAA....................... 19 0 1 5.00 5 2 1 2 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GGGTGCAAATAACTAAAGATT........... 21 0 1 4.00 4 2 1 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................AAGCAAATCCAAAGATACAGT..................................................... 21 0 1 4.00 4 1 1 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................GTGCAAATAACTAAAGATTTT......... 21 0 1 4.00 4 3 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................ATAAGTATCTTCAAGCAAATC................................................................. 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGTGCAAATAACTAAAGATTT.......... 21 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GTAAATATGTTCCGGGAAGAC.................................. 21 0 1 3.00 3 0 0 2 1 0 0 0 0 0 0 0
...............................................................................................................................................................CGTAAATAAGTATCTTCAAGC...................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AGAAGATACAGTAAATATGTTCCGGGA...................................... 27 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AATAACTAAAGATTTTCT....... 18 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
...................................................................ATTTGGTACACCTAGGATTAG.................................................................................................................................................................. 21 1 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
....................................................................................................................................................................................................TAAATATGTTCCGGGAAGACC................................. 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCCGGGAAGACCCGGGTGCAA........................ 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGGGTGCAAATAACTAAAGAT............ 21 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CGGGAAGACCCGGGTGCAAA....................... 20 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
....................................................................................................................................AAAATTAACTGGTAAACATTT................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...........................................................................CTCCTAGGATTAGGGATGTGTAT........................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................TCCAAAGATACAGTAAAT................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GACCCGGGTGCAAATAACTAA................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................AGTAAATATGTTCCGGGAAGAC.................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................AAAATAAGTATCTTCCAGCAAA................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AAATTAACTGGTAAACATTT................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................AAAATCCAAAGATACAGTA.................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CAAATCCAAAGATACAGTAAA.................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GGAAGACCCGGGTGCAAAT...................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TCTTCAAGCAAATCCAAAGATACAGT..................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GGGAAGACCCGGGTTCAAA....................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................ACAGTAAATATGTTC........................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AGACCCGGGTGCAAATAACTA................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................GGTACTCCTAGGATTAGGGAT.............................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................GGGAAGACCCGGGTGCAAAT...................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GTAAATATGTTCCGGGAAGA................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAGATACAGTAAATATGTTCCGGGA...................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AAATTAACTGGTAAACATTTG................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................ATATGTTCCGGGAAGA................................... 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................AATCCAAAGATACAGTAAATA................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................AAAATCCAAAGATACAGTAAAT................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AAGACCCGGGTGCAAATAACT.................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................ATGTGTATCTAAATGAAGCATT.......................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TACAGTAAATATGTTCCGGGA...................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................ATTTGGTACTCCTAGGATTAG.................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................AAAAATTAACTGGTAAACATT.................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AGACCCGGGTGCAAATAACT.................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AGTAAATATGTTCCGGGAAGA................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TCAAGCAAATCCAAAGATACAGTAAAT................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................AGGGATGTGTATCTAAATGAA............................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................AAAACTGGTAAACATTTGTTCAA........................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TCTTCGAGCAAATCCAAAGGT.......................................................... 21 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................GGTGCAAATAACTAAAGATTTT......... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................AAAAAACTGGTAAACATTTGTT.............................................................................................. 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CCGGGAAGACCCGGGTGCAAA....................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AAATTAACTGGTAAACATTTGT............................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CAAGCAAATCCAAAGATACAGT..................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GAAGACCCGGGTGCAAATAAC................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......TAGAACTAGCGAACCAAAA................................................................................................................................................................................................................................ 19 2 6 0.83 5 0 0 0 0 0 3 0 0 1 1 0
.......TAGAACGCTAGAACCAAA................................................................................................................................................................................................................................. 18 2 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................AAGGCAAATCCAAAGATAC........................................................ 19 2 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0
..CTGGGTTGAGCGTTCGAA...................................................................................................................................................................................................................................... 18 3 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0
.................................................................................GGATTGGGGATGTGT.......................................................................................................................................................... 15 1 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................AAAATTAACTGGTAAT...................................................................................................... 16 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................AAAATGTTCCGGGAAGCTC................................. 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:5495856-5496105 + dsi_3985 T--AGACCCATCT--TGCTAGCTTGGTTTT---------------TTTAA-TTAT------AGAGTTT---TT-TTTTAGGTAATTATTCTT------AATTGTAAACCAT---------------GAG-----GA-TCCT-AATCCC------------TACACATAGATTTACTTCGTAAATATTT----------------------------GG--TTTATAAAAT----------ATT-TTTAATTGACCAT-------TTGTAAACAAGTTGCATTTATTCAT-AGAAG-TTCGTTTAGG----------------TTTCTATGTCAT----TTATACAAGGCCCTTCTGGG-CC-----------C---ACGTTTA-TTGATTTCTAAAAGAAAATAAA-----------
droSec2 scaffold_2:5519397-5519646 + T--AGACCCATCT--TGCTAGCTTGGTTTT---------------TTTAA-TTAT------AGAGTTT---TT-TTTTAGGTAATTATTATT------AATTGTAAACCAT---------------GAG-----GA-TCCT-AATCCC------------TACACATTGATTTACTTCGTAAATATTT----------------------------GG--TTTATAAAAT----------ATT-TTTAATTGACCAT-------TTGTAAACAAGTTGCATTTATTCAT-AGAAG-TTCGTTTAGG----------------TTTCTATGTCAT----TTATACAAGGCCCATCTGGG-CC-----------C---ACGTTTA-TTGATTTCTAAAAGAAAATAAA-----------
dm3 chr3L:5583017-5583278 + T--AGATCCATCT--TGCTAGCTTGATTTC---------------TTTAA-TTAT------AGT---G---TT-CTTTAGATAATTATTCTT------AATTTTAAA-TAT---------------GAG-----GA-TCCTCAATGCC------------TACAC--AGATTTATTTCGTAAATATTT----------------------------TG--TTTATAAAAT----------ATT-TTTAATTGACCAT-------TTGTAAACAAGTTGCATTTATTCAT-AGAAGGTCGTTTTCGATTTATTCAGCTTTAGGTTTCTATGTCAT----TTATATAAGGCCCATCTGGG-CC-----------C---ACATTTA-TTGATTTCTAAAAGAAAATAAA-----------
droEre2 scaffold_4784:8269700-8269960 + T--AGATCCGTATTTTGCTAGTTTGATTTTT--------------TTTA-ATAAT------AGT--GTTTTTT-TTTTAGGTAATTATCTTT------AATTATAAA-CAA---------------GTG-----CA-TCCTTTATACC------------TACATTTAGATTAATTTTCTAAATATTT----------------------------TG--TTT-------------------T-TTTAATTGACCAT-------TTGTAAACAAGTTGCATTTATTCAT-AGAGG-TCGATTTAGGTTTATTCAGCTTTAAGTTTCTATGTCAT----TTATAAATGATCCAACTCGGAC------------C---ACGTTTA-TTGATTTCTAAAAGAAAATAAA-----------
droYak3 3L:6147899-6148149 + T--AGATCCGTATATTGCTAGTTTGATTTT--------------------------------------------TTTTAGATAATTATCTTT------AATTAAGAA-CAT---------------AAG-----GA-TCCTGTATCCG------------TACATTAAGATTTATTGCGTAAATATTT----------------------------TG--TTTTTAAAAT----------ATTTTTTAATTGACCAT-------TTGTAAACAAGTTGCATTTATTCAT-AGAGG-TCGTTTTAGGTTTATTCAGCTTTAAGTTTCTATGTCAT----TTATAACTTGTCCAACTTGGAC------------C---ACGTTTA-TTGATTTCTAAAAGAAAATAAA-----------
droEug1 scf7180000409466:3348320-3348581 + T--AGATCCATCTTTGCATAGTTTGATTCT---------------T-TAGCCAAT------AGA---T---TT-GTTTAGATAATTCTCTTA------AGTCATAAA-CAC---------------GGA-----AA-CCCTGTACCCT------------TACTTTAAGTTTTACTTCTTAAAAGGCT----------------------------TG--CTTTTAA-AT-----------TT-TTTAATTGACCAT------TTTGTAAACAAATTGCATTTATTGAT-AGAAG-TCTTTTTAGGTTTACTGAGCTCTAAGTT--TATGTCAT----TTATACACGGTTCGACTTTGGT------------C---AAGATCA-TTGATTTCTGAAAGAAAATAAA-----------
droBia1 scf7180000302193:3076312-3076568 + T--AGACCCATCTCTTGATAGTTCGATTAT---------------T-TAGCCAAT------AGT--TT---TT-CTTTAGGTAATTCGCTTC----------ATAAC-CAT---------------GAA-----TA-TCCT-------T-----------TACGTTAATACTTACCTTTAAAAAGTTT----------------------------CG--TTTTTATAAT----------TTTGTTTTATTGACCAT------TTTGTAAACAAGATGCATTTATTGGT-AGAAG-TCGTTTTAGGTTAACTCAGCTCTAAGTTTGTATGTCAT----CTATATATGGTTTGACTTTGAC------------C---AAATTCA-TTGATTTCTACAAGAAAATAA------------
droTak1 scf7180000415868:262174-262440 + T--AGATCCATCGCTCGTTAGTTTGATTCT---------------T-TAGCCAAT------AGC--TT---TT-CTTTAGAAAATTCTCTTT------AATTATACA-CAT---------------GAA-----AA-TCCTTTATCCTT-----------TACGATAAGATTTACTTTTCAAATATTT----------------------------TT--TTTATA--AT----T-----ATTTTTTATTTGACCAT------TTTGTAAACAAGTTGCATTTATCGAT-AGAAG-TCGTTTTAGGTTTATTCAGCTCTAAGTTTGTATGTCAT----TTATATATGGTTCGACTTTGAC------------C---AAGTTCA-TTGATTTCTATAAGAAAATAA------------
droEle1 scf7180000491268:1063405-1063669 + T--CGACCAATATCCTGATAGTTTGATTAT---------------T-TAGCCAAT------AGT-------TT-CTTTAGATAATTTTCTCT------AAAACT--A-CAT---------------GCA-----AAGTCCGTTATCCTT-----------TACTTTAAGATTTACTTTTTAAAAGTTT----------------------------TG--TTT-TAAAAT----------TTT-TTTATTTGACCAT------TTTGTAAACAAATCGCATTTATTGAT-AAAAG-TCTTGCTAGGTTTATTGAGCTCTAAGTTTGTATGTCAT----TTATATATGGTTCCACTTTGACC-----------C---AAGTTCA-TTGATTTCTACAAGAAAATAAA-----------
droRho1 scf7180000779528:190729-190995 + T--CCATCCTTCTCCTAATAGTTTCATTCT---------------T-TAGCTAAT------AGT-------TT-ATTTAGATAATTTTCTTT------AATTGC--A-CAT---------------GGA-----AA-TCTTTTATCCTT-----------TACTTTAAGATTTACTTTTTAAAAGTTT----------------------------TGTTTTTTTTAAAT----------TTT-TTTAATTGACCAT------TTTGTAAACAAATCGCATTTATTGAT-AAAAG-TCTTGTTAGGTTTATTGAGCTCTAAGTTTGTATGTCAT----TTATATATGGTTCCACTTTGACC-----------C---AAGTCCA-TTGATTTCTACAAGAAAATAAA-----------
droFic1 scf7180000453841:146640-146916 - CGCAGATCCGTCTCCTCTTAGTTTGATTTA---------------T-TAGCCAAT------AGT---C---TT-TTTTAGATAATTCTCTTT------AATTATAAA-CAATCCACATGTTTACATGAA-----AC-TCCTCTAAAAT------------TAAGCTCAAGTTTACTTTTTAAA-GTTT----------------------------TG--TTTTTA--AT----------TTT-TTATTTTGACCA-----------TAAGCAAAACGCATTTATCGATTAAAAG-TCTTGTTAGGTTTATTCAGCTATAAGTTTGTATGTCAC----TAATATATAATTCGACTTGGACT-----------C---AAGTCCA-ATGATTTCTATAAGAAAATAAA-----------
droKik1 scf7180000302266:251835-252052 + A--AGTCCCATTTT-------------------------------T-TAGCCAAT------AAA---T---TT-GTTTAA-TAGATAATTTTAATTTTAAC--------ACTCCAATTGATCCTTTGA-------------------ATTATTTCCAAGT----------------------------------------------------------------TAAATT-AGTT-TCC-----ATTTTCTGACAAT------TTTGTGAACAAATCGCATTTACAGAT-AGAAA-TCGTTTTAGGTTTTATACGCTCTATATATTTTTAA-AC----ATAATTATGGTTCGACT-----------------------------TTGATTTCTGCAAGAAAATAAA-----------
droAna3 scaffold_13337:12966912-12967161 - A--A--TCCAACT-----TAGATCGTTCTA-----------TTATA-----TTGTAGTTTTAGT--TTTCCTC-CTTTAGAAAATTCTTTTA------ACTTATAAG-CAT---------------ATTTTTTTGA-TACT----------------------GCTCGTTTATACCTT--------------------------------------TA--TTTAT------AGTT-TGGATTT-TTCATTTGACCAT------TTTGTGAAGAAATCGCATTTATTGAT-AGAAG-TCT--TTAGTTTAATTAAGGTCTAAAT-TGTAAGTC--------ATGCATGGTTCGACTTGGACC-----------T---CAGTCCA-TTGATTTCTACAAGAAAATAA------------
droBip1 scf7180000396589:1065140-1065387 + C--A--TCCGAT-----ATAGATCGTTTTA-----------TT--A-TA--GGAT------AGT--TTTCCACCTTTTAGAAAATTCTTTTA------GGACATAAG-CGT---------------A-------AT-TTTTTTATACT---------------GCTCGGTTTTTCCTT--------------------------------------TA--TTTAT------ATTTCTCGATTT-TTCATTTGACCAT-----TTTTGTGAACAAATCGCATTTATTGAT-ACAAG-TCT--TTAGTTTAGTTAAGGTCTAAAT-TGTAAGTC-------CATGCATGGTTCGACTTGGACC-----------T---TAGTCCA-TTGATTTCTACAAGAAAATAA------------
dp5 XR_group6:8055922-8056216 - C--AGAGCCATCCC---CCAGCCCGATCCTCGATCTTCATTTC--A-TAGAAAAT------AA-----------TTTTAGATAATTCTATC----TTTAAT--------ACAAAAACCACCCCCT---------------------CTTTATCTGTAAGC--------CATAAACCTCCTAAAGGTTTTCTCTATTTTTTTCCCCATTTTCAAAATTG--TTTT-AAAACT--------TTTT-TTTTACGGACTTA-----TCATGTGAACAAAACGCATTTATATAT-AAGAT-TTTTAACATATTT----------------CTTAGTGACTAAGATAGGCACGATCCGACACTAAAC---------ATTTATTTGTCCC-ATGATTTCTAAAAGAAAACACA-----------
droPer2 scaffold_27:400903-401196 + C--AGAGCCATCCC--G-CAGCCCGATCCTCGATCTTCATTTC--A-TAGAAAAT------AA-----------CTTTAGATAATTCTATC----TTTAAT--------ACAAAAACCACCCCCT---------------------CTTTATCTGTAAGC---------CCAAACCTCCTAAAGGTTTTCTCTATTTTTTTCCCCATTTTCAAAATTG--TTTT-AAAACT--------TTTT-TTTTACGGACTTA-----TCATGTGAACAAAACGCATTTATATAT-AAGAT-TTTTAACATATTT----------------CTTAGTGACTAAGATAGGCACGATCCGACACTGAAC---------ATTTATTTGTCCC-ATGATTTCTAAAAGAAAACACA-----------
droWil2 scf2_1100000004511:3750354-3750375 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TTGATTTCTATAAGAAAATAA------------
droVir3 scaffold_13049:11521809-11521846 + ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCA-TTGATTTCTACAAGAAAATAAAAACAAATCAAC
droMoj3 scaffold_6680:9302851-9302878 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCATCTGATTTCTACAAGAAAATAAA-----------
droGri2 scaffold_15110:7834210-7834341 - T--TTTTATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTTACCATTTGTATTTTGTAAAGAAAGCGCATTTATTGTT-AGACA-TATTTTT------------------------TATAGCTATAGTTTTGCAT--------TGTGAACCAATTTAACATT---TAGTCTA-TTGATTTCTACAAGAAAATAAAAC---------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
T--AGACCCATCT--TGCTAGCTTGGTTTT---------------TTTAA-TTAT------AGAGTTT---TT-TTTTAGGTAATTATTCTT------AATTGTAAACCAT---------------GAG-----GA-TCCT-AATCCC------------TACACATAGATTTACTTCGTAAATATTT----------------------------GG--TTTATAAAAT----------ATT-TTTAATTGACCAT-------TTGTAAACAAGTTGCATTTATTCAT-AGAAG-TTCGTTTAGG----------------TTTCTATGTCAT----TTATACAAGGCCCTTCTGGG-CC-----------C---ACGTTTA-TTGATTTCTAAAAGAAAATAAA-----------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................CAT-AGAAG-TTCGTTTAGG----------------TTT............................................................................................21125.0025000000124000000000
............................................................................................................................................................................................................................................................................................................................................AT----TTATACAAGGCCCTTCTGG............................................................2117.00700000052000000000
.............................................................................................................................................................................................................................................................................................TCAT-AGAAG-TTCGTTTAGG----------------TT.............................................................................................2117.00700000007000000000
.........................................................................................................................................................................................................................................................................................................................................................................................CGTTTA-TTGATTTCTAAAAGA..................2114.00400000031000000000
.......................................................................................................................................................................................................................................................................................ATTTATTCAT-AGAAG-TTCGTT...................................................................................................................2114.00400000000002020000
...............................................................................................................................................................................................................................................................................................................................................................TTCTGGG-CC-----------C---ACGTTTA-TTGA.............................2114.00400300001000000000
........................................................................................................................................................................................................................................................................................TTTATTCAT-AGAAG-TTCGTTT..................................................................................................................2112.00200000010010000000
............................................................................................................................................................................................................................................................................................TTCAT-AGAAG-TTCGTTTAGG----------------TTT............................................................................................2312.00200000002000000000
..................................................................................................................................................................................................................................................................................................................................TTTCTATGTCAT----TTATACAAGGC....................................................................2312.00200200000000000000
..................................................................................................................................................................................................................................................................................................................................TTTCTATGTCAT----TTATACAAGG.....................................................................2212.00200000002000000000
..........................................................................................................................................................................................................................................................................................TATTCAT-AGAAG-TTCGTTTAGG----------------...............................................................................................2211.00100000001000000000
........................................................................................................................................................................................................................................................................................TTTATTCAT-AGAAG-TTCGTTTAGG----------------TT.............................................................................................2611.00100000001000000000
..............................................................................................................................................................................................................................................................................................................TAGG----------------TTTCTATGTCAT----TTATA..........................................................................2111.00100000010000000000
.............................................................................................................................................................................................................................................................................................TCAT-AGAAG-TTCGTTTAG................................................................................................................1811.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TTTA-TTGATTTCTAAAAGAA.................2011.00100000001000000000
.............................................................................................................................................................................................................................................................................................TCAT-AGAAG-TTCGTTTAGG----------------TTT............................................................................................2211.00100000001000000000
...............................................................................................................................................................................................................................................................................................AT-AGAAG-TTCGTTTAGG----------------TTTC...........................................................................................2111.00100000000000100000
.....................................................................................................................................................................................................................................T----------ATT-TTTAATTGACCAT-------TTGT.....................................................................................................................................................2111.00100000000001000000
.....................................................................................................................................................................................................................................................TTAATTGACCAT-------TTGTAAACAAGT.............................................................................................................................................2411.00100000000001000000
......................................................................................................................................................................................................................................................................................CATTTATTCAT-AGAAG-TTCGT....................................................................................................................2111.00100000000000010000
....................................................................................................................................................................................................................................................................................TGCATTTATTCAT-AGAAG-TTCGTTT..................................................................................................................2511.00100000000010000000
......................................................................................................................................................................................................................................................................................................G-TTCGTTTAGG----------------TTTCTATG.......................................................................................1911.00110000000000000000
........................................................................................................................................................................................................................................................................................................................................................................C-----------C---ACGTTTA-TTGATTTCTAAA.....................2111.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................TTATACAAGGCCCTTCTGG............................................................1911.00100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................TTA-TTGATTTCTAAAAGAAAA...............2111.00100000001000000000
....................................................................................................................................................................................................................................................................................................AAG-TTCGTTTAGG----------------TTTCTATG.......................................................................................2111.00100000000001000000
.....................................................................................................................................................................................................................................T----------ATT-TTTAATTGACCAT-------TTGTAAACAAGT.............................................................................................................................................2911.00100000001000000000
........................................................................................................................................................................................................................................................................TTGTAAACAAGTTGCATTTATTCAT-A..............................................................................................................................2611.00100000000000010000
.........................................................................................................................................................................................................................................................................................TTATTCAT-AGAAG-TTCGTTTAGG----------------TTTCT..........................................................................................2811.00100000001000000000
............................................................................................................................................................................................................................................................................................TTCAT-AGAAG-TTCGTTTAGG----------------TT.............................................................................................2211.00100000001000000000
................................................................................................................................................................................................................................................................................AAGTTGCATTTATTCAT-AGAA...........................................................................................................................2111.00100000001000000000
...............................................................................................................................................................................................................................................................................................AT-AGAAG-TTCGTTTAGG----------------TTTCT..........................................................................................2211.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................TCTATGTCAT----TTATACAAGGC....................................................................2111.00100000001000000000
................................................................................................................................................TCCC------------TACACATAGATTTACTTCGTA............................................................................................................................................................................................................................................2511.00100000000010000000
.....................................................................................................................................................................................................................................................TTAATTGACCAT-------TTGTAAACA................................................................................................................................................2111.00100010000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TA-TTGATTTCTAAAAGAAAAT..............2111.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................TTGATTTCTAAAAGAAAAT..............1911.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................C-----------C---ACGTTTA-TTGATTTCTA.......................1911.00100000000001000000
.........................................................................................................................................................................................................................................................TTGACCAT-------TTGTAAACAAGTTGCA.........................................................................................................................................2411.00100000010000000000
........................................................................................................................................................................................................................................................ATTGACCAT-------TTGTAAACAAGT.............................................................................................................................................2111.00100000000001000000
droSec2
T--AGACCCATCT--TGCTAGCTTGGTTTT---------------TTTAA-TTAT------AGAGTTT---TT-TTTTAGGTAATTATTATT------AATTGTAAACCAT---------------GAG-----GA-TCCT-AATCCC------------TACACATTGATTTACTTCGTAAATATTT----------------------------GG--TTTATAAAAT----------ATT-TTTAATTGACCAT-------TTGTAAACAAGTTGCATTTATTCAT-AGAAG-TTCGTTTAGG----------------TTTCTATGTCAT----TTATACAAGGCCCATCTGGG-CC-----------C---ACGTTTA-TTGATTTCTAAAAGAAAATAAA-----------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................TGACCAT-------TTGTAAACAAGTTG...........................................................................................................................................2111.0011000
...................................................................................................................................................C------------TACACATTGATTTACTTCGTAA...........................................................................................................................................................................................................................................2311.0010010
............................................................................................................................................................................................................................................................................................TTCAT-AGAAG-TTCGTTTAGG----------------T..............................................................................................2111.0010010
........................................................................................................................................................................................................................................................................................TTTATTCAT-AGAAG-TTCGTTT..................................................................................................................2111.0011000
..........................................................................................................................................................................................................................................................................................................................................TCAT----TTATACAAGGCCCATCT..............................................................2111.0011000
.............................................................................................................................................................................................................................................................................................TCAT-AGAAG-TTCGTTTAGG----------------TTTC...........................................................................................2311.0010100
.....................................................AT------AGAGTTT---TT-TTTTAGGTAATT...........................................................................................................................................................................................................................................................................................................................................2311.0010100
dm3
T--AGATCCATCT--TGCTAGCTTGATTTC---------------TTTAA-TTAT------AGT---G---TT-CTTTAGATAATTATTCTT------AATTTTAAA-TAT---------------GAG-----GA-TCCTCAATGCC------------TACAC--AGATTTATTTCGTAAATATTT----------------------------TG--TTTATAAAAT----------ATT-TTTAATTGACCAT-------TTGTAAACAAGTTGCATTTATTCAT-AGAAGGTCGTTTTCGATTTATTCAGCTTTAGGTTTCTATGTCAT----TTATATAAGGCCCATCTGGG-CC-----------C---ACATTTA-TTGATTTCTAAAAGAAAATAAA-----------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................TCAT-AGAAGGTCGTTTTCGAT..............................................................................................................21154.005400000000000000000000000000000000000000000000000000000000000000000000000000000100200000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000400000000000000000000000000000001010000000000000000000000000000000000000000000038007100000000001000006510000000000000000000000001000100000
.............................................................................................................................................................................................................................................................................................TCAT-AGAAGGTCGTTTTCGATTTATT.........................................................................................................26147.004700000000000000000000000000000000000000000000000102000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000400000100000000000000001203101000
..............................................................................................................................................................................................................................................................................................CAT-AGAAGGTCGTTTTCGATT.............................................................................................................21135.00350000000000000000000000000000000000000000002000100010000000000000000000000000000010000000000000000000000000000000000000000000000000000000000200000031000000000000000000000000000000000000000000030000004100000000000000000000015003000000000000000000000000000000000000000000010000000000000000000000000010000000000000000000000211100000
..............................................................................................................................................................................................................................................................................................................TCGATTTATTCAGCTTTAGGT..............................................................................................21128.00280000000000000000000001000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000001000000000000010020000000000000000000000000000000000000000000000000502180000000000000002201000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................TTCAT-AGAAGGTCGTTTTCGA...............................................................................................................21126.00260000000000000000000000000000000000000000101000000100000000000000000000000000000100000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000030000000000000000000000000100000000000000000000000000000000000000000000000000000400110000000000000001210000000010000000000000000211100000
.......................................................................................................................................................................................................................................................................................ATTTATTCAT-AGAAGGTCGTT....................................................................................................................21124.00240000000000000000000000000000000000001000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000020100000000000000000000000000000000000000000210000000000000000000000000000100001000000000000000000000000000000000000000000000300070000000000000000201000000000000000000000000100000000
............................................................................................................................................................................................................................................................................................TTCAT-AGAAGGTCGTTTTCGAT..............................................................................................................22121.00210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002200140000000000100001502000000001000000000000001100000000
............................................................................................................................................................................................................................................................................................................TTTCGATTTATTCAGCTTTAG................................................................................................21119.00190000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000500090000000000000001200000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................AT-AGAAGGTCGTTTTCGATTT............................................................................................................21117.00170000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000010002000000000000000000100010000000000000000000000000000000000000000000000000000100330000000000000000200000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TTTATTCAT-AGAAGGTCGTTT...................................................................................................................21117.00170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001600130000000000000001020010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................TTATTCAT-AGAAGGTCGTTTTCGATT.............................................................................................................26116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400002020100000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000500000
............................................................................................................................................................................................................................................................................................TTCAT-AGAAGGTCGTTTTCGATTTATT.........................................................................................................27115.001500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000020000000000000001000000
.............................................................................................................................................................................................................................................................................................................TTCGATTTATTCAGCTTTAGG...............................................................................................21114.00140000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000010000000000000000000000000010101010000000000000000000000000000000000000000000000000010000000000000001400000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TTCAGCTTTAGGTTTCTATGT......................................................................................21112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000280000000000000001001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................TGCATTTATTCAT-AGAAGGTC.......................................................................................................................21112.00120000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000030000000000000001310000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TATTCAT-AGAAGGTCGTTTTCGATT.............................................................................................................25110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001100000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000100300000
.............................................................................................................................................................................................................................................................................................TCAT-AGAAGGTCGTTTTCGATT.............................................................................................................22110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003500100000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................TTTATTCAGCTTTAGGTTTCT..........................................................................................21110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000100140000000000000000101000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................CGATTTATTCAGCTTTAGGTT.............................................................................................2119.0090000000000000000000000000000000000000000101000000000000000000000000000000000010020000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TTCGATTTATTCAGCTTTAG................................................................................................2019.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000120000000000000000401000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................AT----TTATATAAGGCCCATCTGG............................................................2118.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010000000000000000300000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................TTGCATTTATTCAT-AGAAGGT........................................................................................................................2118.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000140000000000000000200000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TTTATTCAT-AGAAGGTCGTTTTCGATT.............................................................................................................2718.0080000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000020000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
........................................................................................................................................................................................................................................................................................TTTATTCAT-AGAAGGTCGTTTTCGAT..............................................................................................................2618.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000400000
......................................................................................................................................................................................................................................................................................................................................TATGTCAT----TTATATAAGGCCC..................................................................2118.0080000000000000000000000000000000000000000000100000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002000000000000000000000000000000000000000000000000020000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................CTATGTCAT----TTATATAAGGCC...................................................................2118.0080000000000000000000000000000000000000000000000000000000001000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100012000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TCAGCTTTAGGTTTCTATGTC.....................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000001100110000000000000000200000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TTTATTCAT-AGAAGGTCGTTTTCGA...............................................................................................................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000010500000
................................................................................................................................................................................................................................................................................................T-AGAAGGTCGTTTTCGATT.............................................................................................................1917.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................AGAAGGTCGTTTTCGATTTAT..........................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000200000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................TTCAT-AGAAGGTCGTTTTCGATTTAT..........................................................................................................2617.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000200000
........................................................................................................................................................................................................................................................................................................................CAGCTTTAGGTTTCTATGTCA....................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000100010000000000000002200000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TTTATTCAT-AGAAGGTCGTTTT..................................................................................................................2217.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000200120000000000000000000000000000000000000000000010000000
.................................................................................................................................................................................................................................................................................................................ATTTATTCAGCTTTAGGTTTC...........................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000200100000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................TCTGGG-CC-----------C---ACATTTA-TTGAT............................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000011000000100000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TTCGATTTATTCAGCTTTAGGT..............................................................................................2216.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002010000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................AT-AGAAGGTCGTTTTCGATTTATTC........................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002102000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................CATCTGGG-CC-----------C---ACATTTA-TTG..............................2115.0050000000000000000000000000000000000000000000000000100000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TGTAAACAAGTTGCATTTATT...................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000002001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................TTCTATGTCAT----TTATATAAGG.....................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................ATTCAT-AGAAGGTCGTTTTCG................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000020000000000000000000010000000000000000000000000100000
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..............................................................................................................................................................................................................................................................................................................................................................CATCTGGG-CC-----------C---ACATTTA-TTGATTTCTAAA.....................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................AT-AGAAGGTCGTTTTCGATTTAT..........................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................CTATGTCAT----TTATATAAGGCCCA.................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TTAGGTTTCTATGTCAT----TTAT...........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TCTATGTCAT----TTATATAAGGCCCATCTG.............................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................TATTCAGCTTTAGGTTTCTATGTCAT----T..............................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................AAACAAGTTGCATTTATTCT.................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CTTGATTTC---------------TTTAA-TTAT------AGT---G---T.........................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
droEre2
T--AGATCCGTATTTTGCTAGTTTGATTTTT--------------TTTA-ATAAT------AGT--GTTTTTT-TTTTAGGTAATTATCTTT------AATTATAAA-CAA---------------GTG-----CA-TCCTTTATACC------------TACATTTAGATTAATTTTCTAAATATTT----------------------------TG--TTT-------------------T-TTTAATTGACCAT-------TTGTAAACAAGTTGCATTTATTCAT-AGAGG-TCGATTTAGGTTTATTCAGCTTTAAGTTTCTATGTCAT----TTATAAATGATCCAACTCGGAC------------C---ACGTTTA-TTGATTTCTAAAAGAAAATAAA-----------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................TTTATTCAT-AGAGG-TCGATTT..................................................................................................................2111.0011000000
..............................................................................................................................................................................................................................T-------------------T-TTTAATTGACCAT-------TTGTA....................................................................................................................................................2011.0011000000
............................................................................................................................................................................................................................................................................................................................................AT----TTATAAATGATCCAACTCG............................................................2111.0011000000
droYak3
T--AGATCCGTATATTGCTAGTTTGATTTT--------------------------------------------TTTTAGATAATTATCTTT------AATTAAGAA-CAT---------------AAG-----GA-TCCTGTATCCG------------TACATTAAGATTTATTGCGTAAATATTT----------------------------TG--TTTTTAAAAT----------ATTTTTTAATTGACCAT-------TTGTAAACAAGTTGCATTTATTCAT-AGAGG-TCGTTTTAGGTTTATTCAGCTTTAAGTTTCTATGTCAT----TTATAACTTGTCCAACTTGGAC------------C---ACGTTTA-TTGATTTCTAAAAGAAAATAAA-----------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................TCAT----TTATAACTTGTCCAACT..............................................................2111.00101000000000
..........................................................................................................................................................................................................................................................................................................................................TCAT----TTATAACTTGTCCAACTT.............................................................2211.00101000000000
.....................................................................................................................................................................................................................................T----------ATTTTTTAATTGACCAT-------TTG......................................................................................................................................................2111.00101000000000
......................................................................................ATCTTT------AATTAAGAA-CAT---------------AAG-----GA-........................................................................................................................................................................................................................................................................................2311.00100100000000
droEug1
T--AGATCCATCTTTGCATAGTTTGATTCT---------------T-TAGCCAAT------AGA---T---TT-GTTTAGATAATTCTCTTA------AGTCATAAA-CAC---------------GGA-----AA-CCCTGTACCCT------------TACTTTAAGTTTTACTTCTTAAAAGGCT----------------------------TG--CTTTTAA-AT-----------TT-TTTAATTGACCAT------TTTGTAAACAAATTGCATTTATTGAT-AGAAG-TCTTTTTAGGTTTACTGAGCTCTAAGTT--TATGTCAT----TTATACACGGTTCGACTTTGGT------------C---AAGATCA-TTGATTTCTGAAAGAAAATAAA-----------SizeHit CountTotal NormTotal
No Reads
droBia1
T--AGACCCATCTCTTGATAGTTCGATTAT---------------T-TAGCCAAT------AGT--TT---TT-CTTTAGGTAATTCGCTTC----------ATAAC-CAT---------------GAA-----TA-TCCT-------T-----------TACGTTAATACTTACCTTTAAAAAGTTT----------------------------CG--TTTTTATAAT----------TTTGTTTTATTGACCAT------TTTGTAAACAAGATGCATTTATTGGT-AGAAG-TCGTTTTAGGTTAACTCAGCTCTAAGTTTGTATGTCAT----CTATATATGGTTTGACTTTGAC------------C---AAATTCA-TTGATTTCTACAAGAAAATAA------------SizeHit CountTotal NormTotal
No Reads
droTak1
T--AGATCCATCGCTCGTTAGTTTGATTCT---------------T-TAGCCAAT------AGC--TT---TT-CTTTAGAAAATTCTCTTT------AATTATACA-CAT---------------GAA-----AA-TCCTTTATCCTT-----------TACGATAAGATTTACTTTTCAAATATTT----------------------------TT--TTTATA--AT----T-----ATTTTTTATTTGACCAT------TTTGTAAACAAGTTGCATTTATCGAT-AGAAG-TCGTTTTAGGTTTATTCAGCTCTAAGTTTGTATGTCAT----TTATATATGGTTCGACTTTGAC------------C---AAGTTCA-TTGATTTCTATAAGAAAATAA------------SizeHit CountTotal NormTotal
No Reads
droEle1
T--CGACCAATATCCTGATAGTTTGATTAT---------------T-TAGCCAAT------AGT-------TT-CTTTAGATAATTTTCTCT------AAAACT--A-CAT---------------GCA-----AAGTCCGTTATCCTT-----------TACTTTAAGATTTACTTTTTAAAAGTTT----------------------------TG--TTT-TAAAAT----------TTT-TTTATTTGACCAT------TTTGTAAACAAATCGCATTTATTGAT-AAAAG-TCTTGCTAGGTTTATTGAGCTCTAAGTTTGTATGTCAT----TTATATATGGTTCCACTTTGACC-----------C---AAGTTCA-TTGATTTCTACAAGAAAATAAA-----------SizeHit CountTotal NormTotal
No Reads
droRho1
T--CCATCCTTCTCCTAATAGTTTCATTCT---------------T-TAGCTAAT------AGT-------TT-ATTTAGATAATTTTCTTT------AATTGC--A-CAT---------------GGA-----AA-TCTTTTATCCTT-----------TACTTTAAGATTTACTTTTTAAAAGTTT----------------------------TGTTTTTTTTAAAT----------TTT-TTTAATTGACCAT------TTTGTAAACAAATCGCATTTATTGAT-AAAAG-TCTTGTTAGGTTTATTGAGCTCTAAGTTTGTATGTCAT----TTATATATGGTTCCACTTTGACC-----------C---AAGTCCA-TTGATTTCTACAAGAAAATAAA-----------SizeHit CountTotal NormTotal
No Reads
droFic1
CGCAGATCCGTCTCCTCTTAGTTTGATTTA---------------T-TAGCCAAT------AGT---C---TT-TTTTAGATAATTCTCTTT------AATTATAAA-CAATCCACATGTTTACATGAA-----AC-TCCTCTAAAAT------------TAAGCTCAAGTTTACTTTTTAAA-GTTT----------------------------TG--TTTTTA--AT----------TTT-TTATTTTGACCA-----------TAAGCAAAACGCATTTATCGATTAAAAG-TCTTGTTAGGTTTATTCAGCTATAAGTTTGTATGTCAC----TAATATATAATTCGACTTGGACT-----------C---AAGTCCA-ATGATTTCTATAAGAAAATAAA-----------SizeHit CountTotal NormTotal
No Reads
droKik1
A--AGTCCCATTTT-------------------------------T-TAGCCAAT------AAA---T---TT-GTTTAA-TAGATAATTTTAATTTTAAC--------ACTCCAATTGATCCTTTGA-------------------ATTATTTCCAAGT----------------------------------------------------------------TAAATT-AGTT-TCC-----ATTTTCTGACAAT------TTTGTGAACAAATCGCATTTACAGAT-AGAAA-TCGTTTTAGGTTTTATACGCTCTATATATTTTTAA-AC----ATAATTATGGTTCGACT-----------------------------TTGATTTCTGCAAGAAAATAAA-----------SizeHit CountTotal NormTotal
No Reads
droAna3
A--A--TCCAACT-----TAGATCGTTCTA-----------TTATA-----TTGTAGTTTTAGT--TTTCCTC-CTTTAGAAAATTCTTTTA------ACTTATAAG-CAT---------------ATTTTTTTGA-TACT----------------------GCTCGTTTATACCTT--------------------------------------TA--TTTAT------AGTT-TGGATTT-TTCATTTGACCAT------TTTGTGAAGAAATCGCATTTATTGAT-AGAAG-TCT--TTAGTTTAATTAAGGTCTAAAT-TGTAAGTC--------ATGCATGGTTCGACTTGGACC-----------T---CAGTCCA-TTGATTTCTACAAGAAAATAA------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................TGTAAGTC--------ATGCATGGTTCGA................................................................2111.001100000
.......................CGTTCTA-----------TTATA-----TTGTAGTC......................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..........................................................................................................................................ACT----------------------GCTCGTTTATACCTT--------------------------------------TA--TC...................................................................................................................................................................................................2211.001010000
.........................................................................................................................................................................................................................................................................................................................................GTC--------ATGCATGGTTCGACTT.............................................................1911.001010000
..........................................................................................................................................................................................................................................................................GTGAAGAAATCGCATTTATTGAT-AGAA...........................................................................................................................2711.001000010
droBip1
C--A--TCCGAT-----ATAGATCGTTTTA-----------TT--A-TA--GGAT------AGT--TTTCCACCTTTTAGAAAATTCTTTTA------GGACATAAG-CGT---------------A-------AT-TTTTTTATACT---------------GCTCGGTTTTTCCTT--------------------------------------TA--TTTAT------ATTTCTCGATTT-TTCATTTGACCAT-----TTTTGTGAACAAATCGCATTTATTGAT-ACAAG-TCT--TTAGTTTAGTTAAGGTCTAAAT-TGTAAGTC-------CATGCATGGTTCGACTTGGACC-----------T---TAGTCCA-TTGATTTCTACAAGAAAATAA------------SizeHit CountTotal NormTotal
No Reads
dp5
C--AGAGCCATCCC---CCAGCCCGATCCTCGATCTTCATTTC--A-TAGAAAAT------AA-----------TTTTAGATAATTCTATC----TTTAAT--------ACAAAAACCACCCCCT---------------------CTTTATCTGTAAGC--------CATAAACCTCCTAAAGGTTTTCTCTATTTTTTTCCCCATTTTCAAAATTG--TTTT-AAAACT--------TTTT-TTTTACGGACTTA-----TCATGTGAACAAAACGCATTTATATAT-AAGAT-TTTTAACATATTT----------------CTTAGTGACTAAGATAGGCACGATCCGACACTAAAC---------ATTTATTTGTCCC-ATGATTTCTAAAAGAAAACACA-----------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................GACTAAGATAGGCACGATCCGACAC.............................................................2511.0010000100000
...........................................................................................................................CT---------------------CTTTATCTGTAAGC--------CATAAACCTC...............................................................................................................................................................................................................................................2611.0010001000000
.......................................................................................................................................................................................................................................................TACGGACTTA-----TCATGTGAACAAAACGCA.........................................................................................................................................2811.0010100000000
.......................................................................................................................................................................................................................................................TACGGACTTA-----TCATGTGAACAAAACGC..........................................................................................................................................2711.0010000000100
droPer2
C--AGAGCCATCCC--G-CAGCCCGATCCTCGATCTTCATTTC--A-TAGAAAAT------AA-----------CTTTAGATAATTCTATC----TTTAAT--------ACAAAAACCACCCCCT---------------------CTTTATCTGTAAGC---------CCAAACCTCCTAAAGGTTTTCTCTATTTTTTTCCCCATTTTCAAAATTG--TTTT-AAAACT--------TTTT-TTTTACGGACTTA-----TCATGTGAACAAAACGCATTTATATAT-AAGAT-TTTTAACATATTT----------------CTTAGTGACTAAGATAGGCACGATCCGACACTGAAC---------ATTTATTTGTCCC-ATGATTTCTAAAAGAAAACACA-----------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................................................................................................................................................AGATAGGCACGATCCGACACTGAAC---------...............................................2513.003300000
..................................................................................................................................................................................................................................................................................................................................................ATAGGCACGATCCGACACTGAAC---------...............................................2312.002200000
...........................................................................................................................CT---------------------CTTTATCTGTAAGC---------CC......................................................................................................................................................................................................................................................1811.001100000
..........................................................................................................................................................................................................................................................................................................................................TGACTAAGATAGGCACGATCCGAC...............................................................2411.001010000
droWil2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TTGATTTCTATAAGAAAATAA------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCA-TTGATTTCTACAAGAAAATAAAAACAAATCAACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCATCTGATTTCTACAAGAAAATAAA-----------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
T--TTTTATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTTACCATTTGTATTTTGTAAAGAAAGCGCATTTATTGTT-AGACA-TATTTTT------------------------TATAGCTATAGTTTTGCAT--------TGTGAACCAATTTAACATT---TAGTCTA-TTGATTTCTACAAGAAAATAAAAC---------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................................................................................................................................................................................................................................................................................................................................ATAGCTATAGTTTTGCAT--------TGTG...........................................................2211.00110

Generated: 05/19/2015 at 03:02 AM