ID:

dsi_3977

Coordinate:

3l:8239542-8239799 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-11.9	-11.5	-11.5

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

GTGCCGCAAAAAAAAGTGTGAATAAAAAATATATACTAAAAAAAATAACGGTAACAATAAAGAAAACATTTAAAACCAAAAATCTACAAGAATTCTATAAATTTTAAGTCACGTTTTACACAGACCTACAACAACAACACCAGCAATTGAACTTAGCCAATAAATTTAATTAAAACAATAAATTAGTGAAAATAAAAATAAACGGATTAAGCAAATATATATAGCGAACTCATAACAAATTCAAAACTGCGGCCTTGTGCCAAAAAAACAGTTTTTATTTTTTCCAATAAAGCATTGTTTTTTACTAGTTTTCAATTCAGATTTTTTTATAAGTGTACCTAGTGAGAAATGTTAAAAG **********************************************************************************************************************************************************************************************............((....((...........))....))...................(((.....))).(((((((((((((((((......))))))).))))))))))...**************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	M023 head	M024 male body	M053 female body	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries
................................................................................................................................................................................................TAAAAATAAACGGATTAAGCAAATATAA..........................................................................................................................................	28	1	1	1.00	1	0	0	0	0	0	0	1	0	0
................................................................................................................................................................................................TAAAAATAAACGGATTAAGCAAATA.............................................................................................................................................	25	0	1	1.00	1	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................AGCATTGTTTTTTACT....................................................	16	0	1	1.00	1	1	0	0	0	0	0	0	0	0
...................................................................................................................TTACACAGACCTACAACAACAACACC.........................................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TTTTATTTTTTCCAATAAAGCATTGTTT..........................................................	28	0	1	1.00	1	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................AACGGATTAAGCAAATATATATAGC.....................................................................................................................................	25	0	1	1.00	1	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................AGATAGCGAACTCGTAAC..........................................................................................................................	18	2	1	1.00	1	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................TAAACGGATTAAGCAAATATATATAGC.....................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0	0	0	0	0
...................................................................................................................TTACACAGACCTACAACAACAACACCAGCA.....................................................................................................................................................................................................................	30	0	1	1.00	1	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TTATAAGTGTACCTAGTGAGAAATGT......	26	0	1	1.00	1	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................AGCGGATTCAGCATATATAT..........................................................................................................................................	20	3	20	0.40	8	0	0	0	0	0	0	0	8	0
.......................................................................................................................................AACACCAGCGATTGAA...............................................................................................................................................................................................................	16	1	7	0.14	1	0	0	0	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................AGTATTCAATTCAGA.....................................	15	1	20	0.10	2	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TAGTGAAAATAAAAAAA..............................................................................................................................................................	17	1	20	0.05	1	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................TTCCGATTTTTTTATA...........................	16	1	20	0.05	1	1	0	0	0	0	0	0	0	0

Anti-sense strand reads

CACGGCGTTTTTTTTCACACTTATTTTTTATATATGATTTTTTTTATTGCCATTGTTATTTCTTTTGTAAATTTTGGTTTTTAGATGTTCTTAAGATATTTAAAATTCAGTGCAAAATGTGTCTGGATGTTGTTGTTGTGGTCGTTAACTTGAATCGGTTATTTAAATTAATTTTGTTATTTAATCACTTTTATTTTTATTTGCCTAATTCGTTTATATATATCGCTTGAGTATTGTTTAAGTTTTGACGCCGGAACACGGTTTTTTTGTCAAAAATAAAAAAGGTTATTTCGTAACAAAAAATGATCAAAAGTTAAGTCTAAAAAAATATTCACATGGATCACTCTTTACAATTTTC **************************************************............((....((...........))....))...................(((.....))).(((((((((((((((((......))))))).))))))))))...**********************************************************************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR902008 ovaries	GSM343915 embryo	SRR902009 testis	M024 male body	SRR553488 RT_0-2 hours eggs
...........................................................................................................................................................................................................................ATATCGCTTCAGTATTGTTT.......................................................................................................................	20	1	1	1.00	1	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................GGTGATTTCGTAAAAAAAAAT......................................................	21	2	2	0.50	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................ACAAGTGAACAAAAGTTAAGTCT.....................................	23	3	4	0.25	1	0	1	0	0	0	0	0	0
......................................................................................................................................................................................AATCACTTTTATCTTTATTT............................................................................................................................................................	20	1	5	0.20	1	0	0	0	1	0	0	0	0
....................TTATTTTTTATATAGGCTTGTTTT..........................................................................................................................................................................................................................................................................................................................	24	3	5	0.20	1	0	0	1	0	0	0	0	0
................................................................................................................................................................................................TTTTCTATTTGCATAATTCGT.................................................................................................................................................	21	3	8	0.13	1	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................TCGCCTAAGTCGTATATATA..........................................................................................................................................	20	3	20	0.10	2	0	1	0	0	0	0	0	1
....................................................................................................................ATTTGTCTGGATTTTGATGTT.............................................................................................................................................................................................................................	21	3	11	0.09	1	0	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................GGTTATTTCGTCAGAAAAGA.......................................................	20	3	18	0.06	1	0	0	0	0	0	0	1	0
..............................................................................................................................ATGTTGTTGTTGTAGTCGAT....................................................................................................................................................................................................................	20	2	20	0.05	1	0	1	0	0	0	0	0	0

Generated: 04/24/2015 at 10:46 AM