ID:

dsi_3964

Coordinate:

3l:16137910-16138059 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCAGCAGGCGGAGCCAGGAAAAGTCGGAGGAAAACTTTTCGTCCTGTAAGGTATGTATGCGAAATTGCAGGAAATAAATTCTGATTTGCTCTCCTTTTAATAAAACCAAGACATTAAGTAGCCGACCGGTGGGCCGGCGGTGCCTTTTGTGATTCAGTTCATTCATAAGTCGTCTGCCACTCTAAGCGCTTAATTATTTAATTATGTTGAACGTCACACATACGGTAATGTTCCATAGCAAAGAGATGGG ************************************************........(((((....(((((......))))).))))).......................(((((((.((.....((((.((.(((((.....(((((((..........)))))))))))).))))))....)))))))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	M025 embryo	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	O001 Testis
............................................................................................................................................................................................................TGTTGGACGTCACACATACGTG........................	22	3	1	2.00	2	2	0	0	0	0	0
.................GAAAAGTCGGAGGAAAACTT.....................................................................................................................................................................................................................	20	0	1	1.00	1	0	1	0	0	0	0
.............................................................................ATTCTGATTTGTTCTCCTA..........................................................................................................................................................	19	2	3	0.33	1	0	0	1	0	0	0
........................................................................................................................GCCGACCGGGGACCCGGCG...............................................................................................................	19	3	11	0.18	2	0	0	0	2	0	0
....................................................................................TCTGCTCTTCTTTTAATAAA..................................................................................................................................................	20	2	7	0.14	1	0	0	0	0	1	0
.......................................................................................................................AGCCGACCGCTTGGCCG..................................................................................................................	17	2	15	0.07	1	0	0	0	0	1	0
.........................................................................................................................................................................TCGTTTCCTACTCTAAGCG..............................................................	19	3	16	0.06	1	0	0	0	1	0	0
.........................GGAGGATAAATTTTTGTCC..............................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1

Anti-sense strand reads

AGTCGTCCGCCTCGGTCCTTTTCAGCCTCCTTTTGAAAAGCAGGACATTCCATACATACGCTTTAACGTCCTTTATTTAAGACTAAACGAGAGGAAAATTATTTTGGTTCTGTAATTCATCGGCTGGCCACCCGGCCGCCACGGAAAACACTAAGTCAAGTAAGTATTCAGCAGACGGTGAGATTCGCGAATTAATAAATTAATACAACTTGCAGTGTGTATGCCATTACAAGGTATCGTTTCTCTACCC ************************************************........(((((....(((((......))))).))))).......................(((((((.((.....((((.((.(((((.....(((((((..........)))))))))))).))))))....)))))))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	O002 Head	M023 head	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries
..............................................................................................................................GCCACCCGGCCGCCACGG..........................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0
...........................................................................................AGGAAAATTATTTTGGTT.............................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0
.............................CTTTTGATAAGGAGGACA...........................................................................................................................................................................................................	18	2	3	0.33	1	0	0	1	0	0	0	0	0
......................................................................................ACGAGAGGACAAGTATTT..................................................................................................................................................	18	2	6	0.17	1	0	0	0	1	0	0	0	0
..................................................................................................................ATCCATCGTCTGGCCAC.......................................................................................................................	17	2	9	0.11	1	0	0	0	0	1	0	0	0
..........................................................................................CAGGAAAACTAATTTGGTTC............................................................................................................................................	20	3	14	0.07	1	0	0	0	0	0	1	0	0
..................................................................................................TTATTTTGGTTCTCTA........................................................................................................................................	16	1	16	0.06	1	0	0	0	0	0	0	1	0
.......................AGACTCCTTTTGAAA....................................................................................................................................................................................................................	15	1	20	0.05	1	0	0	0	0	1	0	0	0
...............................................................................................................................................................................CGGTGAGATTCGCAAT...........................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	1

Generated: 04/24/2015 at 02:26 AM