ID:

dsi_3958

 Coordinate:

2r:5866778-5866933 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-9.5 -9.4 -9.2

Flybase annnotation

exon [2r_5866576_5866777_-]; CDS [2r_5866576_5866777_-]; CDS [2r_5866934_5867078_-]; exon [2r_5866934_5867078_-]; intron [2r_5866778_5866933_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAACGACGTGCTGGCCAGCTATATGTACAAGGATATCGAGGGAATAATAGGTAGCTATGCACATTCGACTCGCTTGCATCAATTAATGTGTCTTGTTTTGTCCTCATGTGCCTCAATTACAATTCAATACGATCGCTCCGTGTTTTGTTCTTTCTTTTATTTTTGGTTACTTTCCGCACTCATCTTTCTTCCGCACACGTTTTAAGCAGGCATCTCGGACTATGAGGGAGGAATCGTGATGGCCTACGGCGGATTC
*********************************************************.((((((..(((..((..((((........))))...))...)))...))))))..........................*********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 O002
Head
 SRR553487
NRT_0-2 hours eggs
..............................................................................................................................................................................................................CAGGCATCTCGGACTATGAGGGA........................... 23 0 1 2.00 2 0 2 0 0 0 0
..........................................................................................................................................................................................................ATAGCAGGCATCTCGGACTA.................................. 20 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................TAATAGGCATCTCGGACTATGAGGG............................ 25 3 1 1.00 1 0 0 1 0 0 0
.........................................................TGCACATTCGACTCGCTTGC................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0
...........................................................................................................................................................................................................TAGCAGGCATCTCGGACTATGAGGGA........................... 26 1 1 1.00 1 0 0 0 1 0 0
..........................................................................................................................................................................................................ATAGCAGGCATCTCGGACTAT................................. 21 2 1 1.00 1 1 0 0 0 0 0
......................................................................................................................ACAATTCAATACGATCGCT....................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................ATCTGTCCTGTTTTGCCCTCA...................................................................................................................................................... 21 3 4 0.50 2 0 0 2 0 0 0
..............................................................................................................................................................................................................................TGAGGGACGAGTCGTGA................. 17 2 9 0.11 1 0 0 1 0 0 0
.........................ACCAAGGATATCGAGAGAAT................................................................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 1
........................................................................................TGCCTTGATTTGTCGTCATG.................................................................................................................................................... 20 3 11 0.09 1 1 0 0 0 0 0
.............................AGGATAGCGAGGGAA.................................................................................................................................................................................................................... 15 1 13 0.08 1 0 0 0 1 0 0

Anti-sense strand reads

GTTGCTGCACGACCGGTCGATATACATGTTCCTATAGCTCCCTTATTATCCATCGATACGTGTAAGCTGAGCGAACGTAGTTAATTACACAGAACAAAACAGGAGTACACGGAGTTAATGTTAAGTTATGCTAGCGAGGCACAAAACAAGAAAGAAAATAAAAACCAATGAAAGGCGTGAGTAGAAAGAAGGCGTGTGCAAAATTCGTCCGTAGAGCCTGATACTCCCTCCTTAGCACTACCGGATGCCGCCTAAG
***********************************************************************************************************************.((((((..(((..((..((((........))))...))...)))...))))))..........................********************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
........................................................................................AGAGAACAAAACAGGAGTA..................................................................................................................................................... 19 1 1 3.00 3 3 0 0 0 0 0
..........................................................................................AGAACAAAACAGGAGTAA.................................................................................................................................................... 18 1 3 1.67 5 5 0 0 0 0 0
.......................................................................................AAGAGAACAAAACAGGAGTA..................................................................................................................................................... 20 2 2 1.50 3 3 0 0 0 0 0
........................................................................................AGAGAACAAAACAGGAGTAA.................................................................................................................................................... 20 2 3 1.33 4 4 0 0 0 0 0
..........................................................................................AGAACAAAACAGGAGTA..................................................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................GAACAAAACAGGAGTAA.................................................................................................................................................... 17 1 3 0.33 1 1 0 0 0 0 0
.......................................................................................AAGAGAACAAAACAGGAGTAA.................................................................................................................................................... 21 3 11 0.27 3 3 0 0 0 0 0
..................................................................................................................................................................AACCAAAGAAAGGCGGGAGTC......................................................................... 21 3 5 0.20 1 0 0 1 0 0 0
.........................................................................................................................................GGCACAACACAAGAAAGGCAA.................................................................................................. 21 3 6 0.17 1 0 0 0 0 1 0
........................................................................................AGAGAACAAAACAGG......................................................................................................................................................... 15 1 20 0.15 3 3 0 0 0 0 0
..........................................................................................AGAACAAAACAGGAGTAAC................................................................................................................................................... 19 2 7 0.14 1 1 0 0 0 0 0
GGTGCTGCACGACCG................................................................................................................................................................................................................................................. 15 1 8 0.13 1 0 1 0 0 0 0
......................................................................................GAAGAGAACAAAACAGGAGTA..................................................................................................................................................... 21 3 9 0.11 1 0 1 0 0 0 0
........................................................................................AGAGAACAAAACAGGAGTAAC................................................................................................................................................... 21 3 9 0.11 1 0 1 0 0 0 0
.....................................................................AGAGAACGTAGTTGATTA......................................................................................................................................................................... 18 2 11 0.09 1 0 0 0 1 0 0
....................................................................................................................................................................CCAAAGATAGGCGTGAG........................................................................... 17 2 13 0.08 1 0 1 0 0 0 0
.............................................................................................................................................................................................ATGCGTGTGCCAAATT................................................... 16 2 20 0.05 1 0 0 0 0 0 1
......................................................................TCGAACGTAGTTGATTA......................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0
..................................................................................................................TTAGTGTTAAGTTATG.............................................................................................................................. 16 1 20 0.05 1 0 0 0 1 0 0

Generated: 04/24/2015 at 01:32 AM