ID:

dsi_3946

 Coordinate:

2r:4516727-4516876 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.7 -8.4 -8.4 -8.1

Flybase annnotation

CDS [2r_4516571_4516741_+]; three_prime_UTR [2r_4516742_4517108_+]; exon [2r_4516571_4517108_+]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
TCGATGAGTTCTGCTCTGTGGTCGGCAACACGGACATTCACAAGAAGATGGTAGTCGATGTCTAAAATAGGTTTAACGCAGATCCTTTTCTACGCGATGTTATTTATTTATTTTATACACGTCGGCATCCTTCGATTGTCACTATCACCACTATTCATATGGTTATTATTTTTGATCGGCGATTCTCTATAGTTAAATATTGTTAAAGAGCCATTGGCCAGCCAGTTCAGTCAGTCAGTCAGTCAGCCAG
********************************************************************************************************.((............(((((.............((((........(((((....))))).........)))))))))..........))********************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M053
female body
 SRR902008
ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 GSM343915
embryo
.........................................................................................................................................................................TTTTGATCGGCGATTCTCTATAGT......................................................... 24 0 1 9.00 9 0 0 4 4 0 0 0 0 1 0 0 0 0
.......GTTCTGCTCTGTGGTCGGC................................................................................................................................................................................................................................ 19 0 1 5.00 5 0 5 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TTTTTGATCGGCGATTCTCTATAGT......................................................... 25 0 1 4.00 4 0 0 1 2 0 0 0 0 0 1 0 0 0
..........................AACACGGACATTCACAAGAAGATGGT...................................................................................................................................................................................................... 26 0 1 3.00 3 0 0 0 3 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................ATTTTTGATCGGCGATTCTCT.............................................................. 21 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TATTTATTTTATACACGTCGGCATCCT....................................................................................................................... 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TTTTGATCGGCGATTCTCTATAGTT........................................................ 25 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ATACACGTCGGCATCCTTCGAT.................................................................................................................. 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TTATACACGTCGGCATCCTTCG.................................................................................................................... 22 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................TTATTATTTTTGATCGGCGATTC................................................................. 23 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0
.................................................................................................................TATACACGTCGGCATCCTTCGATT................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ATATTGCTAAACAACCATTGGC................................ 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1
....................................TTCACAAGAAGATGGTAGTCGATG.............................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............TCTGTGGTCGGCAACACGGA........................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................TGGCCAGCCAGTTCAGTCAGTCAGTCAGTC...... 30 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................TTTATTTATTTTATACACGTCGGCATC......................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................TATTTATTTATTTTATACACGTCGGCA........................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......................CGGCAACACGGACATTCACAAGAAGA.......................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................ACGTCGGAATACTTCGATT................................................................................................................. 19 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................TCTGGTTACTATTTTTTATCGGC...................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TTATTTTATACACGTCGGCATC......................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................ATTTTATACACGTCGGCATCC........................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTTGATCGGCGATTCTCTATAGTTAAA..................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................TTTTATACACGTCGGCATCCT....................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................TTCACAAGAAGATGGTAGTCGATGTCT........................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................TGTGGTCGGCAACACGGACA...................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......GTTCTGCTCTGTGGTCGG................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................CGATGTCTAAAATAGGTTTAACGCA.......................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................TATTTTATACACGTCGGCATCCTT...................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................GGTTATTATTTTTGATCGGCGATTCTCC.............................................................. 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ATACACGTCGGCATCCTTC..................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TTATTTTTGATCGGCGATTCTCTATAGT......................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TTTATACACGTCGGCATCCTTCGAT.................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CATCCTTCGATTGTCACTAT......................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................CTAAAATAGGTTTAACGCAGATCCT.................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TATTTATTTTATACACGTCGGCATCC........................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................TTTGATCGGCGATTCTCTATAGT......................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......AGTTCTGCTCTGTGGTCGGCAAC............................................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................ACGCGATGTTATTTCT............................................................................................................................................... 16 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................TTGTTAAAGAGCCATTGGCCAGCCAG......................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................TATTTTATACACGTCGGCATCC........................................................................................................................ 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTTGATCGGCGATTCTCTATAGTTAAATA................................................... 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................GATCCTTTTCTACGCGATGT...................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................TTTGATCGGCGATTCTCTATAGTTAAAT.................................................... 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................ATTTTATACACGTCGGCATC......................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TTTATTTATTTTATACACGTCGGCA........................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................ATTTTTGATCGGCGATTCTCTATAGT......................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................GTTTTATACACGTCGGCATCC........................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TTGATCGGCGATTCTCTATAGTTAAA..................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................ATTTTATACACGTCGGCATCCTT...................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TATTTTATACACGTCGGCATC......................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................GATCGGCGATTCTCTATAGTTAAAT.................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................TTTTGATCGGCGATTCTCTATAG.......................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................ATTTACTACACGTCGGCCTC......................................................................................................................... 20 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
........TTCTGCTCTGTGGTCGGCAACACGGAC....................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................ACACGTCGGCATCCTTCGATTGTCGCT........................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GTTAAAGAGCCATTGGCC............................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TTCTACGCGATGTTATTTATTTATT.......................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................TTCTCTATAGTTAAATATTGTTAAAGA......................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TTATTATTTTTGATCGGCGATTCT................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................TTATTTATTTATTTTTCACACGTCG.............................................................................................................................. 25 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..GATGAGTTCTGCTCTGTGGTCGGC................................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......GTTCTGCTCTGTGGTCGGCAACACGGAC....................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................AAGGTGGTAGTCGAT............................................................................................................................................................................................... 15 1 3 0.67 2 0 0 0 0 0 0 0 0 0 0 2 0 0
.................................................................AATAGGTTTAACGCAAA........................................................................................................................................................................ 17 1 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................ATGGTAGTCGAAGTC............................................................................................................................................................................................ 15 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................AGCCCATGGCCAGCCAGTT....................... 19 2 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0
....CGGGATCTGCTCTGTGGTCG.................................................................................................................................................................................................................................. 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................TGTTAGAGAGCCTTTGG................................. 17 2 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................TCAGTCAGTCAGTCAGTCAGC... 21 0 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0 0 0
TCGATGAGTTCTGCGCC......................................................................................................................................................................................................................................... 17 2 15 0.07 1 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................TGCTAGTCGGAGTCTAAAA....................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................AAGGGGGTAGTCGATG.............................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................GTAGTGGATGTCTTAA........................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................AGTCAGTCAGTCAGC... 15 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TTTGGATGTTATTTTTGATC......................................................................... 20 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

AGCTACTCAAGACGAGACACCAGCCGTTGTGCCTGTAAGTGTTCTTCTACCATCAGCTACAGATTTTATCCAAATTGCGTCTAGGAAAAGATGCGCTACAATAAATAAATAAAATATGTGCAGCCGTAGGAAGCTAACAGTGATAGTGGTGATAAGTATACCAATAATAAAAACTAGCCGCTAAGAGATATCAATTTATAACAATTTCTCGGTAACCGGTCGGTCAAGTCAGTCAGTCAGTCAGTCGGTC
*********************************************************.((............(((((.............((((........(((((....))))).........)))))))))..........))******************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
..............................................................................................................................................................................TAGCCGCTAAGAGATATCAATT...................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0
...................................................................................................................................................................ATAATAAAAACTAGCCGCTAA.................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0
..CTACTCAAGACGAGACACCAGCCG................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 1 0 0 0
..................................GTAAGTGTTCTTCTACCATCA................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................CCAAAGTGCGTCTACGAGAAG................................................................................................................................................................ 21 3 3 0.33 1 1 0 0 0 0 0 0
...........ACGAGATACCAGCAGTT.............................................................................................................................................................................................................................. 17 2 11 0.27 3 0 0 0 0 3 0 0
...........ACGAGATACCAGCAGTTCT............................................................................................................................................................................................................................ 19 3 9 0.22 2 0 1 0 0 1 0 0
....................CAGCCGTCATGCCTGTAA.................................................................................................................................................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................TCTAGGTAACCTGTCGGTC......................... 19 2 5 0.20 1 0 0 0 0 0 1 0
.........AGACTAGACTCCAGCC................................................................................................................................................................................................................................. 16 2 20 0.15 3 0 0 0 0 3 0 0
........................CGTCGTGCCTCAAAGTGTTC.............................................................................................................................................................................................................. 20 3 10 0.10 1 1 0 0 0 0 0 0
......................................GTGTTCTTCTTGGATCAGCT................................................................................................................................................................................................ 20 3 12 0.08 1 0 0 0 0 1 0 0
......................................................................................................................................................................ATAAAAACTAGCAGCCA................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................................AGTCAGTCAGTCGGT. 15 0 20 0.05 1 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:4516677-4516926 + dsi_3946 TCGATGAGTTCTGCTCTGTGGTCGGCAACACGGACATTCACAAGAAGATGGTAGTCGATGTCTAAA-ATAGGTTT--A----------ACGC--AG-----ATCC---TT-TTCTACGCGATGTTATTTATTTATTTTATACA--CG--TCG-GCATCCTTCGA----TTGTCAC---TATCACC--ACTATTCATATG-----GTTATTA--TTTTT--------------GATCGGCGATTCTCTATAGTTA-AATATTGTTAAA-GAGCCA-TTGGCCAGCCAGTTCAGTC---AGTCAGTCAGTC--------AGCCAG
droSec2 scaffold_1:1331735-1331984 + TCGATGAGTTCTGCTCTGTGGTCGGCAACACGGACATTCACAAGAAGATGGTAGTCGATGTCTAAA-ATAGGTTT--A----------ACGC--AG-----ATTC---TT-TTCTACGCGATGTTATTTATTTATTTTATACA--CG--TCG-GCATCCTTCGA----TTGTCAC---TATTACC--ACTATTCATATG-----GTTATTA--TTTTT--------------TATCGGCTATTCTCTATAGTTA-AATATTGTTAAA-GAGCCT-TTGGCGAGCCAGTTCAGTC---AGTCAGTCAGTC--------AGCCAG
dm3 chr2R:3675202-3675458 + TCGATGAGTTCTGCTCTGTGGTCGGCAACACGGACATTCACAAGAAGATGGTAGTCGATGTCTAAA-ATAGGTTT--A----------ACGC--AG-----ATCC---TT-TTCTACGCGATGTTATTTATTTATTTTATACA--CG--TCG-GCATCCTTCGA----TTGTCAC---TATCACC--ACTATTCATATG-----GTTATTA--TTTTT--------------GATCGGCGATTCTCTATAGTTA-AATATTGTTATG--AGCCT-TTGGCGAGCCAGTTCAGTT---AGTCAGTCAGTCAGTCAGCCAGCCAG
droEre2 scaffold_4929:18932216-18932455 - TCGATGAGTTCTGCTCTGTGGTCGGCAACACGGACATTCACAAGAAGATGGTAGTCGATGTCTAAA-ATAGGTTT--A----------ACGC--AG-----ATCC---TT-TTCTACGCGATGTTATTTATTTATTTTATACA--CG--TCG-GCATCCTTCGA----TTGTCAC---TATCACC--ACTATTCATATG-----GTTATTA--TTTTT--------------GATCGGCGATTCTCT--AGTTA-AATATTGTTATG--AGCCT-TTGGCGAGCCAGTTCAGTC---AGTCAGTCAGT---------------
droYak3 2L:16348115-16348340 + TCGATGAGTTCTGTTCTGTGGTCGGCAATACGGACATTCACAAGAAGATGGTAGTCGATGTCTAAA-ATAGGTTT--A----------ACGC--AG-----ATCCC--CTTTTCTACGCGATGTTATTTATTTATTTTATACA--CG--TCG-GCATCCTTCGA----TTGTCAA---TATCACC--ACTATTTATATG-----GTTATTA--TTTTT--------------GATCGGCAATTCGCT--AGTTA-AATATTGTTATA--AGCCT-TTGGCGCGCCAGTT----------------------------------
droEug1 scf7180000409672:5702783-5703029 + TTGATGAGTTCTGCTCGGTGGTCGGCAACACGGACATTCACAAGAAGATGGTCGTCGACGTTTAAA-ATAGGTTT--A----------CCGC--AG-----ATCC---TTTTTATACGCGATTTTATTTATTC-TTTTGTATATGCG--TCG-GCATCCTTTGA----TTGTCAC---CAACACCACACTATTATTATG-----GTTATTA--TTTTT--------------GATCAGCGATTCTCT--AGTTG-AATATTGTTATA--AGCCG-TTAGCAAGCCAGTTCAGTC---AGTCAGTCA------------GTAAG
droBia1 scf7180000301506:637818-638054 - TCGATGAGTTCTGCTCCGTGGTCGGCAACACGGACATACACAAGAAGATGGTTGTCGATGTCTAAA-ATAGGTTT--A----------CCGCACAG-----ATCC---TTTTTATACGCGATTTTATTTATTC-TTTTGTACATGCA--TCG-GCATCCTTCGA----TTGTCAC---CATCACC--ACTATGATTATG-----GTTATTA--TTTTT--------------GATCAGCGATTCTCT--AGTTG-AATATTGTTATA--AGGCG-TTAGCGAGCCAGTTCAG-------------------------AGTCAG
droTak1 scf7180000415870:166635-166864 - TCGATGAGTTCTGCTCGGTGGTCGGCAACACGGACATTCACAAGAAGATGGTTGTCGACGTCTAAA-ATAGGTTT--A----------CCGC--AG-----GTCC---TTTTTATACGCGATTTTATTTATTC-TTTTGTACATGCG--TCG-GCATCCTTCGA----TTGTCAC---CATCACC--ACTATTATTATG-----GTTATTA--TTTTT--------------GATCAGCGATTCTCT--AGTTG-AATATTGTTATA--AGCCG-TTAGCAAGCCAGTTCAGT------------------------------
droEle1 scf7180000491347:577015-577262 + TCGATGAGTTCTGCTCGGTGGTCGGCAACACTGACATCCACAAGAAAATGGTTGTCGACGTTTAAA-ATAGGTTT--A-----------CGC--AG-----ATCC---TTCTTATACGCGATTTTATTTATTC-TTTTGTACATGCG--TCG-GCATCCTTTGA----TTGTCAT---TATCGCC--ACAATTATTATG-----GTTATTA--CTTTT--------------GATCGGCGATTCTTT--AGTTG-AATATTGTTACA--AGCCG-TTAGCAAGCCAGTTCAGTC---AGTCAGTCAGTC--------AGTCAG
droRho1 scf7180000780226:112079-112307 + TCGACGAGTTTTGCTCAGTGGTCGGCAATACGGACATTCACAAGAAGATGGTTGTCGACGTCTAAA-ATAGGTTT--A----------CCGA--AG-----ATCC---TTCTTATTCGCGATTTTATTTATTC-TTTTGTACATGCG--TCG-GCATCCTTTGA----TTGTCAC---TATCAAC--ACTATTATTATG-----GTTATTA--TTTTT---------------ATCAGCGACTCTTT--AGTTG-AATATTGTTATA--AGCCG-TTAGCAAGCCAGTTCAGT------------------------------
droFic1 scf7180000453215:532485-532714 - TCGATGAGTTCTGCTCAGTGGTCGGCAACACGGACATTCACAAGAAGATGGTTGTCGATGTCTAAA-ATAGGTTT--A----------CCAC--AA-----ATCC---ATTTTATACGCGATTTTATTTATTC-TTTTGTACATGCG--TCG-GCATCCTTGGA----TTGTCAC---TATCACA--ACTATTATTATG-----GTTATTC--TTTTT--------------GATCAGCGATTCTCT--AGTTG-AATATTGTTATA--AGCCG-TTAGCAAGCCAGTTCAGT------------------------------
droKik1 scf7180000302471:606968-607207 - TCGATGAGTTCTGCTCGGTGGTCGGCAACACGGACATACACAAGAAGATGGTTGTCGACGTCTAAA-ATAGGTTA--A----------CCGC--AG-----ATCC---TTTTTATACGCGATTTTATTTATTC-TTTTGTACATGCG--TCT-GCATCCTTCGA----TTATCAC---T--------ACTATTATTATG-----ATTACTATTTTTTT--------------GATCAGCGATTCTCT--AGTTG-AATATTGTTATAAGAGCCG-TTAGCGAGCCAGTTC-GTC---AGTCAGTCAGTC--------------
droAna3 scaffold_13266:10180513-10180785 + TCGATGAGTTCTGCTCGGTGGTCGGCAACACGGACATACACAAGAAGATGGTTGTTGACGTCTAAAAATAGGTTTTAAAAACAGAAAGCAGC--AG-----ATCC---TTTTTATACGCAAT-TTATTTATTC-TTTTGTACATGCG--TCGAGCATCCCTCGT----TTATCACAACAATCACA--ACTATTATTATG-----ATTATTA--ATTAT---ATTTTTTATTCGATCAGCGATTCTCT--AGTTG-AATATTGTTATA--AGCCGTTTAGCGAGCCAGTTCAGA-GTCA----G--AGTC--------AGTCAG
droBip1 scf7180000396428:599944-600189 + TCGACGAGTTCTGCTCGGTGGTCGGCAACACGGACATACACAAGAAGATGGTTGTTGACGTCTAAA-ATAGGTTT--A----------CAGC-CGA-----ATCC---TTTTTATACGCAAT-TTATTTATTC-TTTTGTACATGCG--CCA-GCATCCTTCGT----TTATTAC---TATCACT--ACGATTATTATG-----ATTATTA--TTTTT-------------CGATCAGCGATTCTCT--AGTTG-AATATTGTTATA--AGCCG-TTAGCGAGCCAGTTCAGTC---AG--AGTCAG----------AGTCAG
dp5 3:2573465-2573718 - TCGACGAATTCTGTTCGGTGGTTGGAAACACGGACATACACAAGAAGATGGTTGTTGACGTTTAA---TAGGCTT--A----------CTGA--GA-----ATCATTATTTTTATATGCAGTTTTATTTATTC-TTTTGTACATGCATATAT-GCATTCTTCTTTTTTTTGTCAC---GATT--------AATCTCATGATAATGTCACTT--TTGTT--------------GATCAGCGATCAGGG--AATCG---CATTGTTATG-AAGCTG-CTAACGAGCCATTTCAGTC---AGCCAGTCAGTC--------AGTAAA
droPer2 scaffold_2:2764269-2764522 - TCGACGAATTCTGTTCGGTGGTTGGAAACACGGACATACACAAGAAGATGGTTGTTGACGTTTAA---TAGGCTT--A----------CTGA--GA-----ATCATTATTTTTATATGCAGTTTTATTTATTC-TTTTGTACATGCATATAT-GCATTCTTCTTTTTTTTGTCAC---GATT--------AATCTCATGATAATGTCACTT--TTGTT--------------GATCAGCGATCAGGG--AATCG---CATTGTTATG-AAGCTG-CTAACGAGCCATTTCAGTC---AGCCAGTCAGTC--------AGTAAA
droWil2 scf2_1100000004513:1119086-1119313 + TCGATGAGTTCTGTTCGGTTGTGGGCAATACGGATATACACAAGAAGATGGTTGTTGATGTTTAAG-GGATTTTC--A----------ATTT--AATCGAGTCTC---TCCGTTTTCTAGTTACTATTTATTTCTTTCAAT--------CTT-TCATTATTATTTTTTTTATTAC---AAAT--------ATTATTAT------------A--CTATTGGT-----------TATTGATTGTTTTTGTTAACAAAAATACCTTAATG--AAT-------------------ATC---AACTTTTCTGAA--------AGAAAA
droVir3 scaffold_12875:926802-926868 + TCGACGAGTTCTGTTCGGTGGTCGGCAACACGGATATACACAAGAAGATGGTTGTCGATGTCTAAA-A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6308:199628-199698 + TCGATGAGTTCTGCTCTGTGGTGGGCAATACGGATATACATAAGAAAATGGTTGTTGATGTTTAAG-CTAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14853:2429805-2429873 + TCGATGAGTTCTGCTCTGTGGTCGGCAATACGGATATTCATAAGAAAATGGTTGTTGATGTTTAAA-TTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCGATGAGTTCTGCTCTGTGGTCGGCAACACGGACATTCACAAGAAGATGGTAGTCGATGTCTAAA-ATAGGTTT--A----------ACGC--AG-----ATCC---TT-TTCTACGCGATGTTATTTATTTATTTTATACA--CG--TCG-GCATCCTTCGA----TTGTCAC---TATCACC--ACTATTCATATG-----GTTATTA--TTTTT--------------GATCGGCGATTCTCTATAGTTA-AATATTGTTAAA-GAGCCA-TTGGCCAGCCAGTTCAGTC---AGTCAGTCAGTC--------AGCCAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................TTTT--------------GATCGGCGATTCTCTATAGT.......................................................................2419.00900000044100000000
.......GTTCTGCTCTGTGGTCGGC.........................................................................................................................................................................................................................................................................................................1915.00500500000000000000
.....................................................................................................................................................................................................................TTTTT--------------GATCGGCGATTCTCTATAGT.......................................................................2514.00400000012001000000
..........................AACACGGACATTCACAAGAAGATGGT...............................................................................................................................................................................................................................................................................2613.00300000003000000000
..................................................................................................................................................................................................................A--TTTTT--------------GATCGGCGATTCTCT............................................................................2113.00300300000000000000
................................................................................................................................TATTTATTTTATACA--CG--TCG-GCATCCT...................................................................................................................................................................2712.00200200000000000000
......................................................................................................................................................................................................................TTTT--------------GATCGGCGATTCTCTATAGTT......................................................................2512.00200000020000000000
..........................................................................................................................................ATACA--CG--TCG-GCATCCTTCGA----T..........................................................................................................................................................2212.00200200000000000000
........................................................................................................................................TTATACA--CG--TCG-GCATCCTTCG................................................................................................................................................................2212.00220000000000000000
.............................................................................................................................................................................................................TTATTA--TTTTT--------------GATCGGCGATTC...............................................................................2312.00200000000000020000
.........................................................................................................................................TATACA--CG--TCG-GCATCCTTCGA----TT.........................................................................................................................................................2411.00101000000000000000
....................................TTCACAAGAAGATGGTAGTCGATG.......................................................................................................................................................................................................................................................................2411.00110000000000000000
..............TCTGTGGTCGGCAACACGGA.................................................................................................................................................................................................................................................................................................2011.00100000000000001000
....................................................................................................................................................................................................................................................................................TGGCCAGCCAGTTCAGTC---AGTCAGTCAGTC--------......3011.00100000001000000000
..............................................................................................................................TTTATTTATTTTATACA--CG--TCG-GCATC.....................................................................................................................................................................2711.00110000000000000000
............................................................................................................................TATTTATTTATTTTATACA--CG--TCG-GCA.......................................................................................................................................................................2711.00100000000000010000
......................CGGCAACACGGACATTCACAAGAAGA...................................................................................................................................................................................................................................................................................2611.00100000010000000000
...................................................................................................................................TTATTTTATACA--CG--TCG-GCATC.....................................................................................................................................................................2211.00110000000000000000
.....................................................................................................................................ATTTTATACA--CG--TCG-GCATCC....................................................................................................................................................................2111.00110000000000000000
.......................................................................................................................................................................................................................TTT--------------GATCGGCGATTCTCTATAGTTA-AA..................................................................2711.00100000000100000000
......................................................................................................................................TTTTATACA--CG--TCG-GCATCCT...................................................................................................................................................................2111.00101000000000000000
....................................TTCACAAGAAGATGGTAGTCGATGTCT....................................................................................................................................................................................................................................................................2711.00100000010000000000
................TGTGGTCGGCAACACGGACA...............................................................................................................................................................................................................................................................................................2011.00101000000000000000
.......GTTCTGCTCTGTGGTCGG..........................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.......................................................CGATGTCTAAA-ATAGGTTT--A----------ACGC--A....................................................................................................................................................................................................................................2511.00100010000000000000
....................................................................................................................................TATTTTATACA--CG--TCG-GCATCCTT..................................................................................................................................................................2411.00100000000000001000
......................................................................................................................................................................................................G-----GTTATTA--TTTTT--------------GATCGGCGATTCTCC............................................................................2811.00101000000000000000
..........................................................................................................................................ATACA--CG--TCG-GCATCCTTC.................................................................................................................................................................1911.00101000000000000000
................................................................................................................................................................................................................TTA--TTTTT--------------GATCGGCGATTCTCTATAGT.......................................................................2811.00100000010000000000
.......................................................................................................................................TTTATACA--CG--TCG-GCATCCTTCGA----T..........................................................................................................................................................2511.00101000000000000000
..........................................................................................................................................................CATCCTTCGA----TTGTCAC---TAT..............................................................................................................................................2011.00101000000000000000
.............................................................CTAAA-ATAGGTTT--A----------ACGC--AG-----ATCC---T......................................................................................................................................................................................................................2511.00101000000000000000
................................................................................................................................TATTTATTTTATACA--CG--TCG-GCATCC....................................................................................................................................................................2611.00100000000000010000
.......................................................................................................................................................................................................................TTT--------------GATCGGCGATTCTCTATAGT.......................................................................2311.00101000000000000000
......AGTTCTGCTCTGTGGTCGGCAAC......................................................................................................................................................................................................................................................................................................2311.00100010000000000000
...................................................................................................................................................................................................................................................................TTGTTAAA-GAGCCA-TTGGCCAGCCAG....................................2611.00100001000000000000
....................................................................................................................................TATTTTATACA--CG--TCG-GCATCC....................................................................................................................................................................2211.00110000000000000000
.......................................................................................................................................................................................................................TTT--------------GATCGGCGATTCTCTATAGTTA-AATA................................................................2911.00100000001000000000
...............................................................................................G-----ATCC---TT-TTCTACGCGATGT.......................................................................................................................................................................................................2011.00100010000000000000
.......................................................................................................................................................................................................................TTT--------------GATCGGCGATTCTCTATAGTTA-AAT.................................................................2811.00100010000000000000
.....................................................................................................................................ATTTTATACA--CG--TCG-GCATC.....................................................................................................................................................................2011.00100100000000000000
..............................................................................................................................TTTATTTATTTTATACA--CG--TCG-GCA.......................................................................................................................................................................2511.00100000000000010000
..................................................................................................................................................................................................................A--TTTTT--------------GATCGGCGATTCTCTATAGT.......................................................................2611.00100000000001000000
........................................................................................................................................................................................................................TT--------------GATCGGCGATTCTCTATAGTTA-AA..................................................................2611.00100000010000000000
.....................................................................................................................................ATTTTATACA--CG--TCG-GCATCCTT..................................................................................................................................................................2311.00101000000000000000
....................................................................................................................................TATTTTATACA--CG--TCG-GCATC.....................................................................................................................................................................2111.00110000000000000000
........................................................................................................................................................................................................................................GATCGGCGATTCTCTATAGTTA-AAT.................................................................2511.00100010000000000000
......................................................................................................................................................................................................................TTTT--------------GATCGGCGATTCTCTATAG........................................................................2311.00100000010000000000
........TTCTGCTCTGTGGTCGGCAACACGGAC................................................................................................................................................................................................................................................................................................2711.00101000000000000000
.....................................................................................................................................................................................................................................................................GTTAAA-GAGCCA-TTGGCC..........................................1811.00101000000000000000
...............................................................................................................TTCTACGCGATGTTATTTATTTATT...........................................................................................................................................................................................2511.00100000000001000000
.................................................................................................................................................................................................................................................TTCTCTATAGTTA-AATATTGTTAAA-GA.....................................................2711.00100000010000000000
.............................................................................................................................................................................................................TTATTA--TTTTT--------------GATCGGCGATTCT..............................................................................2411.00100000000000001000
..GATGAGTTCTGCTCTGTGGTCGGC.........................................................................................................................................................................................................................................................................................................2411.00101000000000000000
.......GTTCTGCTCTGTGGTCGGCAACACGGAC................................................................................................................................................................................................................................................................................................2811.00101000000000000000
................................................................................................................................................................................................................................................................................................TCAGTC---AGTCAGTCAGTC--------AGC...21110.09110000000000000000
.........................................................................................................................................................................................................................................................................................................AGTCAGTCAGTC--------AGC...15200.05100000001000000000
droSec2
TCGATGAGTTCTGCTCTGTGGTCGGCAACACGGACATTCACAAGAAGATGGTAGTCGATGTCTAAA-ATAGGTTT--A----------ACGC--AG-----ATTC---TT-TTCTACGCGATGTTATTTATTTATTTTATACA--CG--TCG-GCATCCTTCGA----TTGTCAC---TATTACC--ACTATTCATATG-----GTTATTA--TTTTT--------------TATCGGCTATTCTCTATAGTTA-AATATTGTTAAA-GAGCCT-TTGGCGAGCCAGTTCAGTC---AGTCAGTCAGTC--------AGCCAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................GATGTCTAAA-ATAGGTTT--A----------ACGC--A....................................................................................................................................................................................................................................2412.0020110
..........................................................TGTCTAAA-ATAGGTTT--A----------ACGC--.....................................................................................................................................................................................................................................2111.0010010
......................................CACAAGAAGATGGTAGTC...........................................................................................................................................................................................................................................................................1811.0010010
............................................................................................................................................................................................................................................................................................CAGTTCAGTC---AGTCAGTCAGT...............2111.0010010
.....................................TCACAAGAAGATGGTAGTCGATGTCTAAA-................................................................................................................................................................................................................................................................2911.0010100
........................................................................................................................................................................................................................................................................AAA-GAGCCT-TTGGCGAGCCAGTT..................................2311.0010010
...................................ATTCACAAGAAGATGGTAGTC...........................................................................................................................................................................................................................................................................2111.0010010
..........................................................................................................................................ATACA--CG--TCG-GCATCCTTCGA----TTGTCA.....................................................................................................................................................2711.0010100
...............................................................................................................................................................................................................................................................AATATTGTTAAA-GAGCCT-TTGG............................................2211.0010100
................................................................AA-ATAGGTTT--A----------ACGC--AG-----A.............................................................................................................................................................................................................................1811.0010010
.......................................ACAAGAAGATGGTAGTCGAT........................................................................................................................................................................................................................................................................2011.0010010
.........................................................................................................................................................GCATCCTTCGA----TTGTCAC---TAT..............................................................................................................................................2111.0011000
..GATGAGTTCTGCTCTGTGGTC............................................................................................................................................................................................................................................................................................................2111.0010100
..........................................AGAAGATGGTAGTCGATGTCTAAA-ATA.............................................................................................................................................................................................................................................................2711.0010100
dm3
TCGATGAGTTCTGCTCTGTGGTCGGCAACACGGACATTCACAAGAAGATGGTAGTCGATGTCTAAA-ATAGGTTT--A----------ACGC--AG-----ATCC---TT-TTCTACGCGATGTTATTTATTTATTTTATACA--CG--TCG-GCATCCTTCGA----TTGTCAC---TATCACC--ACTATTCATATG-----GTTATTA--TTTTT--------------GATCGGCGATTCTCTATAGTTA-AATATTGTTATG--AGCCT-TTGGCGAGCCAGTTCAGTT---AGTCAGTCAGTCAGTCAGCCAGCCAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................TTTTATACA--CG--TCG-GCATCCTTCGA----T..........................................................................................................................................................26137.00370000000000000000000000100000000000001000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000300000000000000000000000000000000020000000000000001002000000000040004290000000000000000000000000000000000000000000000000000000000000000000000000000111000000000000000000000000
......................................................................................................................................................................................................................TTTT--------------GATCGGCGATTCTCTATAGT.......................................................................24132.00320000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000100000000000000000000000000000000000000100001000000000000000000210202030010000000000000000000000000000000000000000000000000000000001000000001000000100000000010000000101800000
........................................................................................................................................................................................................................................................................ATG--AGCCT-TTGGCGAGCCAGTTC.................................23130.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000191604000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................A--TTTTT--------------GATCGGCGATTCTCTAT..........................................................................23127.002700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015803000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.....................................................................................................................................................................................................................TTTTT--------------GATCGGCGATTCTCTATAGT.......................................................................25120.00200000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000000000000000000100000000000000000000000000130101000010000000000000000000000000000000001000000000000000000000000000000000000000100000010000000000110400000
..................................................................................................................................................................................................................A--TTTTT--------------GATCGGCGATTCTCTATAGTT......................................................................27119.001900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011200001100100000000000000001000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TGTTATG--AGCCT-TTGGCGAGCCAGT...................................25117.00170000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000030000200010001120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
.....................................................................................................................................................................................................................TTTTT--------------GATCGGCGATTCTCTATAGTT......................................................................26115.00150000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003310200000000000000110100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................TA--TTTTT--------------GATCGGCGATTCTCTATAGT.......................................................................27112.00120000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000002010000000000000000000000000000000000000000000000000000000100000100000000000000010000000000010000000000000000000000000000000000000000000000000000000000000000101000000000000000000100000
.................................................................................................................................................................................................................................................................TATTGTTATG--AGCCT-TTGGCGAGCCAGT...................................28111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000300000000000000000000000000000000000000000020000000200000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000
...................................................................................................................................................................................................................................................................TTGTTATG--AGCCT-TTGGCGAGCCAGT...................................26111.00110000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000030000000000000201000000000000000000000000000000000000000000000000000000000000000000001000000000100000000000000000000100000
......................................................................................................................................TTTTATACA--CG--TCG-GCATCCTTCGA----...........................................................................................................................................................25111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000000000000000000001000000000000000001150000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................TTTT--------------GATCGGCGATTCTCTATAGTT......................................................................25111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000002200000000100000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
..................................................................................................................................................................................................................A--TTTTT--------------GATCGGCGATTCTCTATAGT.......................................................................2619.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000400000001000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................ACAAGAAGATGGTAGTCGATGTCT....................................................................................................................................................................................................................................................................2419.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................TTCAGTT---AGTCAGTCAGTCAGTCAGC.......2618.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000400000
.........................................AAGAAGATGGTAGTCGATGTCTAAA-A...............................................................................................................................................................................................................................................................2618.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.............................ACGGACATTCACAAGAAGATGGT...............................................................................................................................................................................................................................................................................2318.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................AAGAAGATGGTAGTCGATGTCT....................................................................................................................................................................................................................................................................2217.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003301000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................GAGCCAGTTCAGTT---AGTCAGTCAGTC..............2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................TATTA--TTTTT--------------GATCGGCGATTCTCTA...........................................................................2616.0060000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................ATG--AGCCT-TTGGCGAGCCAGTTCAGTC---..........................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................ATTCACAAGAAGATGGTAGTC...........................................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002020010000000
.................................................................................................................................................................................................................................................................TATTGTTATG--AGCCT-TTGGCGAGCCAG....................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................ATACA--CG--TCG-GCATCCTTCGA----TTGT.......................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................ATTGTTATG--AGCCT-TTGGCGAGCCAGT...................................2715.0050000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................TTT--------------GATCGGCGATTCTCTATAGTT......................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..............................................................................................................................................................................................................TATTA--TTTTT--------------GATCGGCGATTCTCT............................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................ATTTATTTTATACA--CG--TCG-GC........................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCTGCTCTGTGGTCGGCAACACGA..................................................................................................................................................................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................A--TTTTT--------------GATCGGCGATTCTCTATAG........................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000200000000
............................................................................................................................................................................................................................................................TA-AATATTGTTATG--AGCCT-TTGGCGAGC.......................................2815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000001030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................TTATTA--TTTTT--------------GATCGGCGA..................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................ATTA--TTTTT--------------GATCGGCGATTCTCTAT..........................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................A--TTTTT--------------GATCGGCGATTCTCT............................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000010000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................TTT--------------GATCGGCGATTCTCTATAGTTA-AA..................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000010001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................ATTTTATACA--CG--TCG-GCA.......................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................A----------ACGC--AG-----ATCC---TT-TTCTACGCGAT.........................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TTA--TTTTT--------------GATCGGCGATTCTCTATAGT.......................................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000
..........................AACACGGACATTCACAAGAAGATGGTA..............................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TGAGTTCTGCTCTGTGGTCGGC.........................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................CATCCTTCGA----TTGTCAC---TATC.............................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................ATGGTAGTCGATGTCTAAA-AT..............................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................TTTTATACA--CG--TCG-GCATCCTTCG................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TGCTCTGTGGTCGGCAACACGGACA...............................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TTA--TTTTT--------------GATCGGCGATTCTCTAT..........................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................TTCAGTT---AGTCAGTCAGTCAGTCAGCC......2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.............................................................................................................................................................................................................TTATTA--TTTTT--------------GATCGGCGATTCTCTA...........................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................ATG--AGCCT-TTGGCGAGCCAGT...................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...............................................................................................................................................................................................................................................................................CCT-TTGGCGAGCCAGTTCAGTT---AGTCAGT...................2913.0030000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................CGC--AG-----ATCC---TT-TTCTACGCGAT.........................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003
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............GCTCTGTGGTCGGCAACACGG..................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..............................CGGACATTCACAAGAAGATGGTAGT............................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..............................................................................................................................................................................................ATTCATATG-----GTTATTA--TTTTT--------------G..........................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................ATTTTATACA--CG--TCG-GCATCCTTT.................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................A--TTTTT--------------GATCGGCGATTCTCTA...........................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TCGATGAGTTCTGCTCTGTGGTCGGCAACACGGACATTCACAAGAAGATGGTAGTCGATGTCTAAA-ATAGGTTT--A----------ACGC--AG-----ATCC---TT-TTCTACGCGATGTTATTTATTTATTTTATACA--CG--TCG-GCATCCTTCGA----TTGTCAC---TATCACC--ACTATTCATATG-----GTTATTA--TTTTT--------------GATCGGCGATTCTCT--AGTTA-AATATTGTTATG--AGCCT-TTGGCGAGCCAGTTCAGTC---AGTCAGTCAGT---------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................TATTA--TTTTT--------------GATCGGCGATTCTCT--..........................................................................2519.0090000009
.............................................AGATGGTAGTCGATGTCTAA..................................................................................................................................................................................................................................................................2011.0010000100
...................................................................................................................................................................................................................................................................................TTGGCGAGCCAGTTCAGTC---AGT.......................2211.0011000000
.........................................................................................................................................TATACA--CG--TCG-GCATCCTTCGA----...........................................................................................................................................................2211.0010000010
......AGTTCTGCTCTGTGGTCGG..........................................................................................................................................................................................................................................................................................................1911.0010000100
............................................................................................................................................................................................................................................................................................CAGTTCAGTC---AGTCAGTCA.................1911.0010000100
...........................................................................................................................................TACA--CG--TCG-GCATCCTTCGA----T..........................................................................................................................................................2111.0010000100
.............................................................................A----------ACGC--AG-----ATCC---TT-TTCTACGC............................................................................................................................................................................................................2111.0011000000
..............................................................................................................................................................................................................TATTA--TTTTT--------------GATCGGCGATTCTCT--AGT.......................................................................2811.0010000001
....................................................................................................................................................................................................................................................................................TGGCGAGCCAGTTCAGTC---AGTCA.....................2311.0011000000
....................GTCGGCAACACGGACATTCACAAG.......................................................................................................................................................................................................................................................................................2411.0011000000
............................................AAGATGGTAGTCGATGTCTAAA-ATA.............................................................................................................................................................................................................................................................2511.0010000100
......................................CACAAGAAGATGGTAGTC...........................................................................................................................................................................................................................................................................1811.0010000100
...........................ACACGGACATTCACAAGAAGATG.................................................................................................................................................................................................................................................................................2311.0010000100
..GATGAGTTCTGCTCTGTGGTCGGC.........................................................................................................................................................................................................................................................................................................2411.0010000010
..........................................................................................................................................................................................................................................................GTTA-AATATTGTTATG--AGCCT-TTGGC...........................................2611.0010000010
....................................TTCACAAGAAGATGGTAGTC...........................................................................................................................................................................................................................................................................2011.0010000100
............GCTCTGTGGTCGGCAACACGG..................................................................................................................................................................................................................................................................................................2111.0011000000
................................................................................................................................................................................................................................................................ATATTGTTATG--AGCCT-TTGGCGAGC.......................................2511.0010100000
...............................................ATGGTAGTCGATGTCTAAA-ATA.............................................................................................................................................................................................................................................................2211.0010000100
......AGTTCTGCTCTGTGGTCGGCAAC......................................................................................................................................................................................................................................................................................................2311.0010001000
...............................................................................................G-----ATCC---TT-TTCTACGCGATGTT......................................................................................................................................................................................................2111.0010010000
.............................................................................................................................ATTTATTTATTTTATACA--CG--TC............................................................................................................................................................................2211.0010000100
...........................................................................................................................................TACA--CG--TCG-GCATCCTTCGA----TTGTCAC---.................................................................................................................................................2711.0011000000
.......................................................................................................................................TTTATACA--CG--TCG-GCATCCTTCGA----TT.........................................................................................................................................................2611.0010000100
...................................................................................................................................................................A----TTGTCAC---TATCACC--ACTATTC.................................................................................................................................2211.0011000000
.....................................................................................................................................................................................................................................................CT--AGTTA-AATATTGTTATG--AGCCT-................................................2411.0010000010
................................GACATTCACAAGAAGATGGTAGTC...........................................................................................................................................................................................................................................................................2411.0010000010
...............................................................................................................................................................................................................ATTA--TTTTT--------------GATCGGCGATT................................................................................2011.0010000010
...................................ATTCACAAGAAGATGGTAGTCG..........................................................................................................................................................................................................................................................................2211.0010000010
droYak3
TCGATGAGTTCTGTTCTGTGGTCGGCAATACGGACATTCACAAGAAGATGGTAGTCGATGTCTAAA-ATAGGTTT--A----------ACGC--AG-----ATCCC--CTTTTCTACGCGATGTTATTTATTTATTTTATACA--CG--TCG-GCATCCTTCGA----TTGTCAA---TATCACC--ACTATTTATATG-----GTTATTA--TTTTT--------------GATCGGCAATTCGCT--AGTTA-AATATTGTTATA--AGCCT-TTGGCGCGCCAGTT----------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................ATGGTAGTCGATGTCTAAA-ATAGGTTT--......................................................................................................................................................................................................................................................27112.0012000000000012
...................................ATTCACAAGAAGATGGTAGTC...........................................................................................................................................................................................................................................................................2115.00500000050000
.......GTTCTGTTCTGTGGTCGGCA........................................................................................................................................................................................................................................................................................................2012.00201100000000
...................................ATTCACAAGAAGATGGTAGT............................................................................................................................................................................................................................................................................2011.00100000010000
.....................................TCACAAGAAGATGGTAGTCGA.........................................................................................................................................................................................................................................................................2111.00100000010000
........................................................GATGTCTAAA-ATAGGTTT--A----------AC.........................................................................................................................................................................................................................................2111.00100100000000
..GATGAGTTCTGTTCTGTGGTC............................................................................................................................................................................................................................................................................................................2111.00100001000000
............................................................TCTAAA-ATAGGTTT--A----------ACGC--AG-----AT............................................................................................................................................................................................................................2311.00101000000000
...................................................................................................................................................................................ATCACC--ACTATTTATATG-----GTT....................................................................................................................2111.00101000000000
........................................................................................................................................TTATACA--CG--TCG-GCATCCT...................................................................................................................................................................1911.00110000000000
..........................................................................................................................................ATACA--CG--TCG-GCATCCTTCGA----TT.........................................................................................................................................................2311.00100000010000
.......................................ACAAGAAGATGGTAGTCGATGT......................................................................................................................................................................................................................................................................2211.00100000010000
......................................................................................................................................................................................................................................................................TTATA--AGCCT-TTGGCGCGCCA.....................................2111.00101000000000
............................................................................................................................................ACA--CG--TCG-GCATCCTTCGA----TTGT.......................................................................................................................................................2311.00101000000000
.........................................AAGAAGATGGTAGTCGATGT......................................................................................................................................................................................................................................................................2011.00100100000000
........................................................................................................................................TTATACA--CG--TCG-GCATCCTTCGA----TT.........................................................................................................................................................2511.00100000010000
.....................................................................................................................................ATTTTATACA--CG--TCG-GCATC.....................................................................................................................................................................2011.00110000000000
......................................................................................................................................................................................................G-----GTTATTA--TTTTT--------------GATCGGC....................................................................................2011.00101000000000
.................................................................................................................................................................................................................................................TTCGCT--AGTTA-AATATTGT............................................................1911.00101000000000
.........................................................................................................................................................................................................................................................AGTTA-AATATTGTTATA--AGCC..................................................2111.00101000000000
..........................AATACGGACATTCACAAGAAGATG.................................................................................................................................................................................................................................................................................2411.00110000000000
.......................GGCAATACGGACATTCACAAGAAGATG.................................................................................................................................................................................................................................................................................2711.00101000000000
...........................................GAAGATGGTAGTCGATGTCTAA..................................................................................................................................................................................................................................................................2211.00100000010000
...........................................GAAGATGGTAGTCGATGTCTAAA-AT..............................................................................................................................................................................................................................................................2511.00100000010000
...................................ATTCACAAGAAGATGGTAGTCGATGT......................................................................................................................................................................................................................................................................2611.00100000010000
..................................................................................................................................................................................................................................................................ATTGTTATA--AGCCT-TTGGCGCGCCA.....................................2511.00101000000000
.............................................................................................................................................................................AA---TATCACC--ACTATTTATATG-----G......................................................................................................................2211.00101000000000
.............................................AGATGGTAGTCGATGTCTAAA-AT..............................................................................................................................................................................................................................................................2311.00100010000000
.........................................AAGAAGATGGTAGTCGATG.......................................................................................................................................................................................................................................................................1911.00101000000000
............GTTCTGTGGTCGGCAATACGGAC................................................................................................................................................................................................................................................................................................2311.00100000100000
droEug1
TTGATGAGTTCTGCTCGGTGGTCGGCAACACGGACATTCACAAGAAGATGGTCGTCGACGTTTAAA-ATAGGTTT--A----------CCGC--AG-----ATCC---TTTTTATACGCGATTTTATTTATTC-TTTTGTATATGCG--TCG-GCATCCTTTGA----TTGTCAC---CAACACCACACTATTATTATG-----GTTATTA--TTTTT--------------GATCAGCGATTCTCT--AGTTG-AATATTGTTATA--AGCCG-TTAGCAAGCCAGTTCAGTC---AGTCAGTCA------------GTAAGSizeHit CountTotal NormTotal
No Reads
droBia1
TCGATGAGTTCTGCTCCGTGGTCGGCAACACGGACATACACAAGAAGATGGTTGTCGATGTCTAAA-ATAGGTTT--A----------CCGCACAG-----ATCC---TTTTTATACGCGATTTTATTTATTC-TTTTGTACATGCA--TCG-GCATCCTTCGA----TTGTCAC---CATCACC--ACTATGATTATG-----GTTATTA--TTTTT--------------GATCAGCGATTCTCT--AGTTG-AATATTGTTATA--AGGCG-TTAGCGAGCCAGTTCAG-------------------------AGTCAGSizeHit CountTotal NormTotal
No Reads
droTak1
TCGATGAGTTCTGCTCGGTGGTCGGCAACACGGACATTCACAAGAAGATGGTTGTCGACGTCTAAA-ATAGGTTT--A----------CCGC--AG-----GTCC---TTTTTATACGCGATTTTATTTATTC-TTTTGTACATGCG--TCG-GCATCCTTCGA----TTGTCAC---CATCACC--ACTATTATTATG-----GTTATTA--TTTTT--------------GATCAGCGATTCTCT--AGTTG-AATATTGTTATA--AGCCG-TTAGCAAGCCAGTTCAGT------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TCGATGAGTTCTGCTCGGTGGTCGGCAACACTGACATCCACAAGAAAATGGTTGTCGACGTTTAAA-ATAGGTTT--A-----------CGC--AG-----ATCC---TTCTTATACGCGATTTTATTTATTC-TTTTGTACATGCG--TCG-GCATCCTTTGA----TTGTCAT---TATCGCC--ACAATTATTATG-----GTTATTA--CTTTT--------------GATCGGCGATTCTTT--AGTTG-AATATTGTTACA--AGCCG-TTAGCAAGCCAGTTCAGTC---AGTCAGTCAGTC--------AGTCAGSizeHit CountTotal NormTotal
No Reads
droRho1
TCGACGAGTTTTGCTCAGTGGTCGGCAATACGGACATTCACAAGAAGATGGTTGTCGACGTCTAAA-ATAGGTTT--A----------CCGA--AG-----ATCC---TTCTTATTCGCGATTTTATTTATTC-TTTTGTACATGCG--TCG-GCATCCTTTGA----TTGTCAC---TATCAAC--ACTATTATTATG-----GTTATTA--TTTTT---------------ATCAGCGACTCTTT--AGTTG-AATATTGTTATA--AGCCG-TTAGCAAGCCAGTTCAGT------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TCGATGAGTTCTGCTCAGTGGTCGGCAACACGGACATTCACAAGAAGATGGTTGTCGATGTCTAAA-ATAGGTTT--A----------CCAC--AA-----ATCC---ATTTTATACGCGATTTTATTTATTC-TTTTGTACATGCG--TCG-GCATCCTTGGA----TTGTCAC---TATCACA--ACTATTATTATG-----GTTATTC--TTTTT--------------GATCAGCGATTCTCT--AGTTG-AATATTGTTATA--AGCCG-TTAGCAAGCCAGTTCAGT------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TCGATGAGTTCTGCTCGGTGGTCGGCAACACGGACATACACAAGAAGATGGTTGTCGACGTCTAAA-ATAGGTTA--A----------CCGC--AG-----ATCC---TTTTTATACGCGATTTTATTTATTC-TTTTGTACATGCG--TCT-GCATCCTTCGA----TTATCAC---T--------ACTATTATTATG-----ATTACTATTTTTTT--------------GATCAGCGATTCTCT--AGTTG-AATATTGTTATAAGAGCCG-TTAGCGAGCCAGTTC-GTC---AGTCAGTCAGTC--------------SizeHit CountTotal NormTotal
No Reads
droAna3
TCGATGAGTTCTGCTCGGTGGTCGGCAACACGGACATACACAAGAAGATGGTTGTTGACGTCTAAAAATAGGTTTTAAAAACAGAAAGCAGC--AG-----ATCC---TTTTTATACGCAAT-TTATTTATTC-TTTTGTACATGCG--TCGAGCATCCCTCGT----TTATCACAACAATCACA--ACTATTATTATG-----ATTATTA--ATTAT---ATTTTTTATTCGATCAGCGATTCTCT--AGTTG-AATATTGTTATA--AGCCGTTTAGCGAGCCAGTTCAGA-GTCA----G--AGTC--------AGTCAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................GTACATGCG--TCGAGCATCCCTCGT----...........................................................................................................................................................2411.001000010
..................................................................AATAGGTTTTAAAAACAGAAAGC..........................................................................................................................................................................................................................................2311.001010000
.............................................AGATGGTTGTTGACGTCTAAA.................................................................................................................................................................................................................................................................2111.001000010
............................................AAGATGGTTGTTGACGTCT....................................................................................................................................................................................................................................................................1911.001000010
......................................CACAAGAAGATGGTTGTTGAC........................................................................................................................................................................................................................................................................2111.001000010
....................................TACACAAGAAGATGGTTGTTG..........................................................................................................................................................................................................................................................................2111.001000001
.........................................AAGAAGATGGTTGTTGACGTCTT...................................................................................................................................................................................................................................................................2311.001000001
.................................................................................................................................................................................................................................................................TATTGTTATA--AGCCGTTTAGC...........................................2111.001000010
..............................................GATGGTTGTTGACGTCTAAAAAT..............................................................................................................................................................................................................................................................2311.001000001
...............CGGTGGTCGGCAACACGGA.................................................................................................................................................................................................................................................................................................1911.001100000
..................................CATACACAAGAAGATGGT...............................................................................................................................................................................................................................................................................1811.001001000
..........................................................................TTAAAAACAGAAAGCAGC--A....................................................................................................................................................................................................................................1911.001010000
.......GTTCTGCTCGGTGGTCGG..........................................................................................................................................................................................................................................................................................................1811.001100000
...................................ATACACAAGAAGATGGTTGTTGA.........................................................................................................................................................................................................................................................................2311.001010000
..................................CATACACAAGAAGATGGTT..............................................................................................................................................................................................................................................................................1911.001000010
.........................................AAGAAGATGGTTGTTGACGT......................................................................................................................................................................................................................................................................2011.001000010
..............................................GATGGTTGTTGACGTCTAAA.................................................................................................................................................................................................................................................................2011.001000010
.......GTTCTGCTCGGTGGTCGGC.........................................................................................................................................................................................................................................................................................................1911.001100000
droBip1
TCGACGAGTTCTGCTCGGTGGTCGGCAACACGGACATACACAAGAAGATGGTTGTTGACGTCTAAA-ATAGGTTT--A----------CAGC-CGA-----ATCC---TTTTTATACGCAAT-TTATTTATTC-TTTTGTACATGCG--CCA-GCATCCTTCGT----TTATTAC---TATCACT--ACGATTATTATG-----ATTATTA--TTTTT-------------CGATCAGCGATTCTCT--AGTTG-AATATTGTTATA--AGCCG-TTAGCGAGCCAGTTCAGTC---AG--AGTCAG----------AGTCAGSizeHit CountTotal NormTotal
No Reads
dp5
TCGACGAATTCTGTTCGGTGGTTGGAAACACGGACATACACAAGAAGATGGTTGTTGACGTTTAA---TAGGCTT--A----------CTGA--GA-----ATCATTATTTTTATATGCAGTTTTATTTATTC-TTTTGTACATGCATATAT-GCATTCTTCTTTTTTTTGTCAC---GATT--------AATCTCATGATAATGTCACTT--TTGTT--------------GATCAGCGATCAGGG--AATCG---CATTGTTATG-AAGCTG-CTAACGAGCCATTTCAGTC---AGCCAGTCAGTC--------AGTAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................CACGGACATACACAAGAAGATGGTTGT............................................................................................................................................................................................................................................................................2713.0030000000030
............................CACGGACATACACAAGAAGATGGTTG.............................................................................................................................................................................................................................................................................2612.0020000000020
...........................ACACGGACATACACAAGAAGATGGT...............................................................................................................................................................................................................................................................................2512.0020000000020
.........TCTGTTCGGTGGTTGGAAACACGGA.................................................................................................................................................................................................................................................................................................2512.0020000000020
.....................................................................................................................................................................TTTTTGTCAC---GATT--------AATCTCATGA...........................................................................................................................2412.0020000000020
...........................................GAAGATGGTTGTTGACGTTTAA---TAGGC..........................................................................................................................................................................................................................................................2712.0020000000020
.....GAATTCTGTTCGGTGGTT............................................................................................................................................................................................................................................................................................................1811.0010100000000
.....................................................................................................................................................................TTTTTGTCAC---GATT--------AATCTCATGATAA........................................................................................................................2711.0010100000000
.....GAATTCTGTTCGGTGGTTGGAAACACG...................................................................................................................................................................................................................................................................................................2711.0010100000000
.....................TTGGAAACACGGACATACACAAGAAGA...................................................................................................................................................................................................................................................................................2711.0010100000000
.................................................................................................................................................................................................................................................TCAGGG--AATCG---CATTGTTATG-AAGC...................................................2511.0010000000010
.....................................................................................................................................................................................................TGATAATGTCACTT--TTGTT--------------GA.........................................................................................2111.0010100000000
.....................................................................................................................................................................................T--------AATCTCATGATAATGTCACTT--TTGTT--------------...........................................................................................2711.0010010000000
.........TCTGTTCGGTGGTTGGAAACACGGACA...............................................................................................................................................................................................................................................................................................2711.0010100000000
..................................................................................................................................................................................................................T--TTGTT--------------GATCAGCGATCAGGG--AAT.......................................................................2411.0010000010000
..........................................................................................................................................................................................................................................................................................GCCATTTCAGTC---AGCCAGTCAGTC--------AGTA..2811.0010100000000
.............................ACGGACATACACAAGAAGATG.................................................................................................................................................................................................................................................................................2111.0010000000010
..........................................AGAAGATGGTTGTTGACGTTTAA---TAGG...........................................................................................................................................................................................................................................................2711.0010100000000
......................TGGAAACACGGACATACACAAGAAGA...................................................................................................................................................................................................................................................................................2611.0010000000010
........................................CAAGAAGATGGTTGTTGACGT......................................................................................................................................................................................................................................................................2111.0010100000000
............................CACGGACATACACAAGAAGATGGT...............................................................................................................................................................................................................................................................................2411.0010000000010
..........................AACACGGACATACACAAGAAGATGG................................................................................................................................................................................................................................................................................2511.0010000000010
...................................................TTGTTGACGTTTAA---TAGGCTT--A----------C..........................................................................................................................................................................................................................................2311.0010000000010
..............................................GATGGTTGTTGACGTTTAA---TAGG...........................................................................................................................................................................................................................................................2311.0010100000000
..................................................................................................................................................................................................TCATGATAATGTCACTT--TTGTT--------------GATCAG.....................................................................................2811.0010100000000
............................CACGGACATACACAAGAAGATGGTT..............................................................................................................................................................................................................................................................................2511.0010000000010
....................................................................................................................................................................................................................................................GGG--AATCG---CATTGTTATG-AAGCTG-CT..............................................2611.0010100000000
..................................................................................................................................................................................................................................................CAGGG--AATCG---CATTGTTATG-AAGCTG-C...............................................2711.0010100000000
..........CTGTTCGGTGGTTGGAAACACGGA.................................................................................................................................................................................................................................................................................................2411.0010100000000
.........................AAACACGGACATACACAAGAAGATGG................................................................................................................................................................................................................................................................................2611.0010000000010
.....................................................GTTGACGTTTAA---TAGGCTT--A----------C..........................................................................................................................................................................................................................................2111.0010100000000
........................................................................................................................................................................................................................................GATCAGCGATCAGGG--AATCG---CATTGT............................................................2611.0010100000000
...........................................................GTTTAA---TAGGCTT--A----------CTGA--GA-----..............................................................................................................................................................................................................................2011.0010100000000
........TTCTGTTCGGTGGTTGGAAACACG...................................................................................................................................................................................................................................................................................................2411.0010100000000
........................................CAAGAAGATGGTTGTTGACGTTTAA---...............................................................................................................................................................................................................................................................2511.0010000000010
.....................................................................................................................................................................................T--------AATCTCATGATAATGTCA...................................................................................................................1911.0010100000000
..........................................................................................................................................................................................................ATGTCACTT--TTGTT--------------GATCAGCGATC................................................................................2511.0010100000000
.........................................AAGAAGATGGTTGTTGACGTTTAA---...............................................................................................................................................................................................................................................................2411.0010000001000
..........................AACACGGACATACACAAGAAGATGGTT..............................................................................................................................................................................................................................................................................2711.0010000000001
.......................................................................................................................................................................TTTGTCAC---GATT--------AATCTCATGATA.........................................................................................................................2411.0010010000000
............................................................................................................................................................................CAC---GATT--------AATCTCATGATAATGTCACTT--..............................................................................................................2811.0010100000000
................................................TGGTTGTTGACGTTTAA---TAGGCTT--A----------C..........................................................................................................................................................................................................................................2611.0010000000010
...........................................GAAGATGGTTGTTGACGTTTA...................................................................................................................................................................................................................................................................2111.0010000100000
..........................................................................................................................................................................................................................................................ATCG---CATTGTTATG-AAGCTG-CTAAC...........................................2511.0010100000000
..........................................................................................................................................................................................................................................................................G-AAGCTG-CTAACGAGCCATTTC.................................2211.0010001000000
...............................................................AA---TAGGCTT--A----------CTGA--GA-----ATC...........................................................................................................................................................................................................................1911.0010000010000
...................................ATACACAAGAAGATGGTTGTT...........................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
TCGACGAATTCTGTTCGGTGGTTGGAAACACGGACATACACAAGAAGATGGTTGTTGACGTTTAA---TAGGCTT--A----------CTGA--GA-----ATCATTATTTTTATATGCAGTTTTATTTATTC-TTTTGTACATGCATATAT-GCATTCTTCTTTTTTTTGTCAC---GATT--------AATCTCATGATAATGTCACTT--TTGTT--------------GATCAGCGATCAGGG--AATCG---CATTGTTATG-AAGCTG-CTAACGAGCCATTTCAGTC---AGCCAGTCAGTC--------AGTAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................ACGGACATACACAAGAAGATGGTT..............................................................................................................................................................................................................................................................................2413.003300000
.....GAATTCTGTTCGGTGGTTGGA.........................................................................................................................................................................................................................................................................................................2112.002200000
.........................................................................................................................................................................................................................................................................................AGCCATTTCAGTC---AGCCAGTCAGTC--------A.....2611.001001000
............................................AAGATGGTTGTTGACGTTTAA---TAG............................................................................................................................................................................................................................................................2411.001000001
.........................................AAGAAGATGGTTGTTGACGTTTA...................................................................................................................................................................................................................................................................2311.001000001
............................................AAGATGGTTGTTGACGTTTAA---TAGGCTT--......................................................................................................................................................................................................................................................2811.001000001
............GTTCGGTGGTTGGAAACACGGA.................................................................................................................................................................................................................................................................................................2211.001001000
.........................................................................................................................................................................TGTCAC---GATT--------AATCTCATGATAATG......................................................................................................................2511.001010000
......................................................................................................................................................................................................................................................G--AATCG---CATTGTTATG-AAGCTG-................................................2211.001100000
.....GAATTCTGTTCGGTGGTTGGAAA.......................................................................................................................................................................................................................................................................................................2311.001100000
.................................................................................................................................................................................................................................................TCAGGG--AATCG---CATTGTTATG-AAGC...................................................2511.001010000
..........................................AGAAGATGGTTGTTGACGTTTA...................................................................................................................................................................................................................................................................2211.001000001
....................................................................................................................................................................TTTTTTGTCAC---GATT--------AATCTCAT.............................................................................................................................2311.001001000
droWil2
TCGATGAGTTCTGTTCGGTTGTGGGCAATACGGATATACACAAGAAGATGGTTGTTGATGTTTAAG-GGATTTTC--A----------ATTT--AATCGAGTCTC---TCCGTTTTCTAGTTACTATTTATTTCTTTCAAT--------CTT-TCATTATTATTTTTTTTATTAC---AAAT--------ATTATTAT------------A--CTATTGGT-----------TATTGATTGTTTTTGTTAACAAAAATACCTTAATG--AAT-------------------ATC---AACTTTTCTGAA--------AGAAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................................TAATG--AAT-------------------ATC---AACTTTTCTGAA--------AGAAA.2812.00202000
...................................ATACACAAGAAGATGGTTGTTGAT........................................................................................................................................................................................................................................................................2412.00200110
...................................................................................................................................................................................................TAT------------A--CTATTGGT-----------TATTGATTGTTTTTG............................................................................2711.00100010
..............................................GATGGTTGTTGATGTTTAAG-G...............................................................................................................................................................................................................................................................2111.00100010
.............................................................TTAAG-GGATTTTC--A----------ATTT--AAT..................................................................................................................................................................................................................................2111.00100001
.......GTTCTGTTCGGTTGTGGGCAA.......................................................................................................................................................................................................................................................................................................2111.00100010
...........................................GAAGATGGTTGTTGATGTTTAAG-................................................................................................................................................................................................................................................................2311.00100100
........................................................................................ATTT--AATCGAGTCTC---TCC....................................................................................................................................................................................................................1811.00100010
..GATGAGTTCTGTTCGGTTGT.............................................................................................................................................................................................................................................................................................................2011.00100100
.............................................................................................................................................................................................................................................................AAAATACCTTAATG--AAT-------------------ATC---AACT......................2411.00101000
..........................AATACGGATATACACAAGAAGATG.................................................................................................................................................................................................................................................................................2411.00100100
.................................................................................................................................................................................................ATTAT------------A--CTATTGGT-----------TATTGATTGTT................................................................................2511.00110000
..........................................................................................................................................................................ATTAC---AAAT--------ATTATTAT------------A--C.............................................................................................................1911.00101000
.....................................................................................................................................................................................................T------------A--CTATTGGT-----------TATTGATTGTTTTTGT...........................................................................2611.00101000
..............................................GATGGTTGTTGATGTTTAAG-GGATT...........................................................................................................................................................................................................................................................2511.00100100
...............................................................................................ATCGAGTCTC---TCCGTTTTCTAGT..........................................................................................................................................................................................................2311.00101000
.............................................AGATGGTTGTTGATGTTTAAG-GGATT...........................................................................................................................................................................................................................................................2611.00110000
........................................................GATGTTTAAG-GGATTTTC--A----------ATTT--.....................................................................................................................................................................................................................................2311.00100010
droVir3
TCGACGAGTTCTGTTCGGTGGTCGGCAACACGGATATACACAAGAAGATGGTTGTCGATGTCTAAA-A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....GAGTTCTGTTCGGTGGTCGGCA........................................................................................................................................................................................................................................................................................................2214.004000000000000000000000000000000000000000000000000000000000000004
............GTTCGGTGGTCGGCAACACGG..................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
..GACGAGTTCTGTTCGGTG...............................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000001000000000000000000000000000
.......GTTCTGTTCGGTGGTCGGC.........................................................................................................................................................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
............................CACGGATATACACAAGAAGATGGTTGTC...........................................................................................................................................................................................................................................................................2811.001000000000000100000000000000000000000000000000000000000000000000
..GACGAGTTCTGTTCGGTGGTCGGC.........................................................................................................................................................................................................................................................................................................2411.001100000000000000000000000000000000000000000000000000000000000000
.................................ATATACACAAGAAGATGGTTGTC...........................................................................................................................................................................................................................................................................2311.001000000000001000000000000000000000000000000000000000000000000000
..........................................AGAAGATGGTTGTCGATGTCTAAA-................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000010000000000000000000000000000000
......................................CACAAGAAGATGGTTGTCG..........................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
...............................................ATGGTTGTCGATGTCTAAA-A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2011.001000000001000000000000000000000000000000000000000000000000000000
.........................................AAGAAGATGGTTGTCGATGT......................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..........................AACACGGATATACACAAGAAG....................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
.............................................AGATGGTTGTCGATGTCTAAA-................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
...............CGGTGGTCGGCAACACGGA.................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
..........................AACACGGATATACACAAG.......................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000001000000000000000000000000000000
.CGACGAGTTCTGTTCGGTGGTCGGCAAC......................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
..............TCGGTGGTCGGCAACACGGAT................................................................................................................................................................................................................................................................................................2111.001000000000000100000000000000000000000000000000000000000000000000
droMoj3
TCGATGAGTTCTGCTCTGTGGTGGGCAATACGGATATACATAAGAAAATGGTTGTTGATGTTTAAG-CTAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TCGATGAGTTCTGCTCTGTGGTCGGCAATACGGATATTCATAAGAAAATGGTTGTTGATGTTTAAA-TTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:10 PM