dsi_3939

CDS [2r_7979149_7979170_-]; exon [2r_7979149_7979170_-]; intron [2r_7978377_7979148_-]; CDS [2r_7979238_7979466_-]; exon [2r_7979238_7979466_-]; intron [2r_7979171_7979237_-]

##################################################-------------------------------------------------------------------######################---------------------------- GGGCAACCATACGGATTCCAAGAAGACCGGCAATGCAGGCGGCCGCATTGGTAAGTAGTCAGTGTAGAACGGTGATTGCAAAAATAATCAAATATTTGTTTTAAACGATTCTTTCAGCCTGTGGTGTTATTGGCATCAAGTAAATATCCCTTCCTATGTGCCAGCCA ************************************************..(((.((((.((.((((((((((((((......)))))).....)))))))).)))))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	M053 female body	O001 Testis	SRR553488 RT_0-2 hours eggs
.......................................................................................................................TGTGGTGTTATTGGCA................................	16	0	1	1.00	1	0	1	0	0	0
.................CCAAGAAGACCGGCA.......................................................................................................................................	15	0	1	1.00	1	1	0	0	0	0
...CAACCATACGGATTCCAAGAA...............................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0
...............TTCCAAGAAGACCGGCAATGCAGG................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0
............................................................................................TATTTGTTTTAAACGATT.........................................................	18	0	1	1.00	1	0	0	0	1	0
.................................................................................................................TCAGCCTGTGGTGTAGGTGG..................................	20	3	9	0.11	1	0	0	0	0	1
......................................................GAAGTCAGTGTAGAA..................................................................................................	15	1	20	0.05	1	0	1	0	0	0
................TCCAAGAAGATCGGTA.......................................................................................................................................	16	2	20	0.05	1	1	0	0	0	0

CCCGTTGGTATGCCTAAGGTTCTTCTGGCCGTTACGTCCGCCGGCGTAACCATTCATCAGTCACATCTTGCCACTAACGTTTTTATTAGTTTATAAACAAAATTTGCTAAGAAAGTCGGACACCACAATAACCGTAGTTCATTTATAGGGAAGGATACACGGTCGGT ************************************************..(((.((((.((.((((((((((((((......)))))).....)))))))).)))))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	GSM343915 embryo	SRR618934 dsim w501 ovaries	M023 head	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs
..TGTTGGTATACCTAAGGTTCGT...............................................................................................................................................	22	3	3	3.00	9	9	0	0	0	0	0	0
..AGTTGGTATACCTAAGGTTCTT...............................................................................................................................................	22	2	1	2.00	2	2	0	0	0	0	0	0
....TGGGTATACCTAAGGTTCTT...............................................................................................................................................	20	2	1	1.00	1	0	1	0	0	0	0	0
....TTGGTATACCTAAGGTTCGT...............................................................................................................................................	20	2	3	0.67	2	2	0	0	0	0	0	0
.......................TCTTGCCGGTACGTCCGC..............................................................................................................................	18	2	3	0.67	2	0	0	2	0	0	0	0
...GTTGGTATACCTAAGGTTCGT...............................................................................................................................................	21	2	2	0.50	1	1	0	0	0	0	0	0
....TTGGTATACATAAGGTTCTT...............................................................................................................................................	20	2	2	0.50	1	1	0	0	0	0	0	0
....TTGGTATACCTCAGGTTCTT...............................................................................................................................................	20	2	2	0.50	1	1	0	0	0	0	0	0
....TTGGTATGCATAAGGTTCGT...............................................................................................................................................	20	2	3	0.33	1	1	0	0	0	0	0	0
.....TGGTATGCATCAGGTTCTT...............................................................................................................................................	19	2	3	0.33	1	0	0	1	0	0	0	0
...GTTGGTATACATAAGGTTCT................................................................................................................................................	20	2	3	0.33	1	0	0	0	1	0	0	0
..AGGTGGTATACCTAAGGTTCTT...............................................................................................................................................	22	3	3	0.33	1	1	0	0	0	0	0	0
.................................................................................................................................................TAGGGAAGGATACACTT.....	17	2	8	0.13	1	0	0	0	0	0	1	0
....TTGGTATACCTCAGGTCCTT...............................................................................................................................................	20	3	8	0.13	1	1	0	0	0	0	0	0
..................................................................................................AAAAATTGCTCAGAAAG....................................................	17	2	20	0.10	2	0	0	0	0	2	0	0
............................................................................................ATAAAAAAAATTTGCTAA.........................................................	18	1	10	0.10	1	0	0	0	0	1	0	0
....TTGTTATACCTCAGGTTCTT...............................................................................................................................................	20	3	11	0.09	1	1	0	0	0	0	0	0
.................................ACGTCCGCCGGCCGAAC.....................................................................................................................	17	2	19	0.05	1	0	0	0	0	0	0	1
......................TTCTTGCCGTTACGT..................................................................................................................................	15	1	20	0.05	1	0	0	0	0	0	0	1
....TTGTTATACCTAAGGTTCGT...............................................................................................................................................	20	3	20	0.05	1	1	0	0	0	0	0	0
....TTGTTATACCTACGGTTCTT...............................................................................................................................................	20	3	20	0.05	1	0	1	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2r:7979121-7979287 -	dsi_3939	GGGCAACCATACGGATTCCAAGAAGACCGGCAATGCAGGCGGCCGCATTGGTAAGTAG----------------------------TCAGTGTAGAACG-----G-----------T---G-----A----------------TTGCAAAAAT---------A-----AT----------------CA----AAT----ATTTGTTTTA---AACGATTCTTTCAGCCTGTGGTGTTATTGGCATCAAGTAAATATCCCTTCCT-ATG-T---GCCAGCC----A--
droSec2	scaffold_1:4825822-4825990 -		GGGCAACCATACGGATTCCAAGAAGACCGGCAATGCAGGCGGCCGCATTGGTAAGTAG----------------------------TCAGTGTAGAACG-----G-----------T---G-----A----------------TTGCAAAAAT---------T-----AA--------------TATA----AAT----ATTTGTTTTA---AACCTTTCTTTCAGCCTGTGGTGTTATTGGCGTCAAGTAAATATCCCTTCCT-ATG-T---GTCAGCC----A--
dm3	chr2R:7269050-7269217 -		GGGCAACCACACGGATTCCAAGAAGACCGGCAATGCAGGCGGCCGCATTGGTAAGTAG----------------------------TCAGTGTAAAATA-----A----------------TAA------------------A-------ATA-ATAATAATA----------------------ATA-------AAATATTTGTTTTA---A-ACCTTCTTTCAGCCTGTGGTGTTATTGGCATCAAGTAAATATCCCTTCCA-ACG-T---GTCAGCC----A--
droEre2	scaffold_4845:18525487-18525664 +		GGGCAATCACACGGACTCCAAGAAGACCGGCAATGCTGGCGGCCGCATTGGTAAGTAG----------------------------TCTGGCCCAAACA-----GTACCAATGAA-T---G-----A----------------TCGCAAATAT---------A-----AT--------------GATG-------TTG-ATTTGTTTTG---A-ACTTTCTTTCAGCCTGCGGTGTTATTGGCATCAAGTAAATATCCCTTCCA-ATG-T---GTCAGCC----C--
droYak3	2R:9690869-9691047 +		GGGCAACCATACGGACTCCAAGAAGACTGGCAATGCAGGCGGCCGCATTGGTAAGTAG----------------------------TCTGGGTAAAACA-----TTATCAATAAA-T---G-----A----------------TCCCAAAAAT---------A-----AT--------------GATA-------CAT-ATATATTTTT---TAATTTTCTTGCAGCCTGCGGTGTGATTGGCATCAAGTAAATATCCCTTCCA-ACG-T---GTCAGCC----A--
droEug1	scf7180000409462:1237648-1237807 +		GGGCAACCACACGGATTCCAAGAAGACTGGCAATGCAGGCGGTCGCATTGGTAAGTTA----------------------------TTAAAT-----------------------------------------------------------TA-ATATACATAATTATAG-TTAAA-----------A---TAAT--------GTTT-----TTCCTATCTTACAGCCTGCGGTGTTATTGGCATCAAGTAAATATCCCATCCA-ACC-C---GACAGCC----A--
droBia1	scf7180000301754:1020350-1020519 +		GGGCAACCACACGGACTCCAAGAAGACCGGCAACGCAGGTGGCCGCATTGGTAAGAAA----------------------------TCGGAATT-----A-ACAT-----------TAAT-CAA------------------A-------TTC-ATAAAAGTA----------------------ATA-------AAC--TCTTTTCTT---TACTTCTCACACAGCCTGCGGTGTTATTGGCATCAAGTAAATATCCCTTCCA-ACG-C---AAAAGCA----A--
droTak1	scf7180000414560:288221-288392 +		GGGCAACCATACGGATTCCAAGAAGACCGGCAATGCAGGTGGCCGCATTGGTAAGTAA----------------------------TCTGATTTAACCA-----T-----------TAAT-CAA------------------A-------AACAATAAAAAT----------------------AATA-------TAC-ATTTTTTCTA---TACTTTCTAAACAGCCTGCGGTGTTATTGGCATCAAGTAAATATCCCTTCCA-ACG-C---AAAAGCC-------
droEle1	scf7180000491214:2716160-2716322 -		GGGCAATCACACGGATTCCAAGAAGACTGGCAATGCAGGTGGCCGCATTGGTAAGATA----------------------------TCGGTGTT-----GTCAAT-----------TTAG-CAA------------------A-------ATC-ATATACATA----------------------ATA-------AAA-ATT------------TATTTTTTACAGCCTGCGGTGTCATTGGTATCAAGTAAATATCCCTTCCA-CTG-C---GACAGCC----A--
droRho1	scf7180000779263:291654-291814 +		CGGAAACCACACGGACTCCAAGAAGACTGGAAACGCAGGTGGCCGTATTGGTAAGCAT----------------------------TCGGAATT-----G-CAAA-----------TAAA-CAA------------------A-------ATC-ATATAATTA----------------------ATA-------CAA--------------ATTTATTTTTACAGCCTGCGGTGTTATTGGCATCAAGTAAATATCCCTTCCA-ACG-C---GACAGCC----A--
droFic1	scf7180000453773:203192-203359 -		GGGCAACCACACGGATTCCAAGAAGACCGGCAATGCAGGTGGCCGCATTGGTAAGAAT----------------------------TCAAATA--ATTC---------------------------AT--------------------------------CTCTTAAAAG-CTCAA--AGAAGTAATG----AAT--------ATTCTC----TTCTTTCTTGCAGCCTGCGGAGTTATTGGTATCAAGTAAATATCCCTTCCA-AGG-C---GACAGCC----A--
droKik1	scf7180000302476:101734-101909 -		GGGTAACCACACGGATTCCAAGAAGACTGGCAACGCTGGCGGCCGCATTGGTGGGTTTTTAATTGGAAA-----------------TCTTTT--GGGTTT---------------------------------------------TCCTTAAT---------T-----AT----------------TA----ATT----AATTCTTTTTAATTTATATCCTTACAGCCTGCGGTGTTATTGGTGTCAAGTAAATATCGCTTCCA-CCG-A---GACAGAC----AAA
droAna3	scaffold_13266:971566-971731 -	dan_1705	GGGCAACCATACGGATTCCAAGAAGACTGGCAACGCAGGCGGACGAATTGGTAAGGAT----------------------------GTGGACT--AATAA------TGC------T--------TC--------------------A---------------------AC-GG----AAAATAA----CATTAAT----------CTTA---TTATTTCGTTTCAGCCTGCGGGGTTATTGGTATCAAGTAAATATCGCTTCCT-CCA-CAACAACAGAC----A--
droBip1	scf7180000396730:1976528-1976690 -		GGGTAACCACACGGACTCTAAGAAGACTGGCAACGCAGGTGGACGTATTGGTAAGGAC----------------------------ATGGAA-----TAG-TAAT-------------------TT--------------------A---------------------AC-AG----AAATTCT----TATTAAT----------CTTG---TTATTTCCTTTCAGCCTGCGGTGTTATTGGTATCAAGTAAATATCGCTTCCT-CCA-CAACAAACGCC----A--
dp5	3:13507459-13507627 +		GGGAGATCACGTCGACTCCAAGAAGACGGGCAATGCAGGAGGCCGTATCGGTGAGGAG----------------------------TCTCCA--GAATGT------CTC------T--------TT--------------------A---------------------ATTGG----TTAATTC----TATAAAT--------A--CT----TTTTTCCCTTGCAGGCTGCGGTGTGATTGGTGTCAAGTAAATATCTCTCTCTTCCATCAAAGAAAGACA---A--
droPer2	scaffold_2:8112632-8112800 -		GGGAGATCACGTGGACTCCAAGAAGACGGGCAATGCAGGAGGCCGTATCGGTGAGGAG----------------------------TCTCCA--GAATGT------CTC------T--------TT--------------------A---------------------ATTGG----TTAATTC----TATAAAT--------A--CT----TTATTCCCTTGCAGGCTGCGGTGTGATTGGTGTCAAGTAAATATCTCTCTCTTCCATCAAAGAAAGACA---A--
droWil2	scf2_1100000004513:4668090-4668254 +		TGGTAATCATACAGATTCCAAAAAGACTGGCAATGCAGGCGGAAGAGTTGGTATGTAG----------------------------CCTCAAACAAATG---------------------------ATTT-------------TCGA---AAT-A-------------AATTG----TTAA---TATATATATAT--------ATTTTT----CTGTTCATTTCAGCCTGCGGAGTTATTGGTGTCAAGTAAATATCA----------------AAAGCCAAGCA--
droVir3	scaffold_12875:13235674-13235819 +	dvi_6629	GGGCAACCACACGGACTCCAAAAAGACGGGCAATGCGGGCGGCCGTATTGGTGCGTAC----------------------------TTGAATAT-----A-CTTC-----------TCGT-CCG------------------A-------ATC-GA----------------------AATACTTATA----AAT--------A--CC----CTTTCTCTTTGCAGCCTGCGGTGTTATTGGCATTAAGTAAATATCC-----------------------------
droMoj3	scaffold_6496:20523691-20523842 +		GGGCAATCACACCGACTCAAAGAAGACGGGCAATGCTGGCGGCCGCATCGGTGCGTAT---------------------------------AACAAAAG---------------------------CTTTGCAACTAGTCCCA-------------------T-----AT----------------TA----AAT----ATCCTTTTCTGA-TTTTCTCTTTACAGCCTGCGGTGTTATTGGCATTAAGTAAATATCTGTT--------------------------
droGri2	scaffold_8526:1312-1477 +		GGGCAATCACACGGACTCCAAGAAGACCGGCAATGCTGGCGGCCGCATCGGTAAGCCTCACACAAAACAACTTTATTTAAACCCATTT----------------------------------------------------------AAATAAT---------A-----AT--CACACA------AATG-------TTT-CTTCTTCTTT---TATTTTTCTTTCAGGTTGCGGTGTTATTGGCATTAAGTAAATATC------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GGGCAACCATACGGATTCCAAGAAGACCGGCAATGCAGGCGGCCGCATTGGTAAGTAG----------------------------TCAGTGTAGAACG-----G-----------T---G-----A----------------TTGCAAAAAT---------A-----AT----------------CA----AAT----ATTTGTTTTA---AACGATTCTTTCAGCCTGTGGTGTTATTGGCATCAAGTAAATATCCCTTCCT-ATG-T---GCCAGCC----A--	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....................................................................................................................................................................................................................................TGTGGTGTTATTGGCA...........................................	16	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................CCAAGAAGACCGGCA...............................................................................................................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...CAACCATACGGATTCCAAGAA.......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TTCCAAGAAGACCGGCAATGCAGG........................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................T----ATTTGTTTTA---AACGATT....................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GGGCAACCATACGGATTCCAAGAAGACCGGCAATGCAGGCGGCCGCATTGGTAAGTAG----------------------------TCAGTGTAGAACG-----G-----------T---G-----A----------------TTGCAAAAAT---------T-----AA--------------TATA----AAT----ATTTGTTTTA---AACCTTTCTTTCAGCCTGTGGTGTTATTGGCGTCAAGTAAATATCCCTTCCT-ATG-T---GTCAGCC----A--	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....AACCATACGGATTCCAAGAAGACCGGC................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0
................................ATGCAGGCGGCCGCATTG.............................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1
...............TTCCAAGAAGACCGGCAATGC...........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0

dm3

GGGCAACCACACGGATTCCAAGAAGACCGGCAATGCAGGCGGCCGCATTGGTAAGTAG----------------------------TCAGTGTAAAATA-----A----------------TAA------------------A-------ATA-ATAATAATA----------------------ATA-------AAATATTTGTTTTA---A-ACCTTCTTTCAGCCTGTGGTGTTATTGGCATCAAGTAAATATCCCTTCCA-ACG-T---GTCAGCC----A--	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........ACGGATTCCAAGAAGACCGGC................................................................................................................................................................................................................................................................	21	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........ACACGGATTCCAAGAAGACCGGC................................................................................................................................................................................................................................................................	23	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	4	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GACCGGCAATGCAGGCGGCCGCAT...............................................................................................................................................................................................................................................	24	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7
..................................................GTAAGTAG----------------------------TCAGTGTAAAATA-----.......................................................................................................................................................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....ACCACACGGATTCCAAGAAGACCGGC................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTAAGTAG----------------------------TCAGTGTAAAAA.............................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................................................................................................ATCCCTTCCA-ACG-T---GTCAGC........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TGCAGGCGGCCGCATTGCCT..........................................................................................................................................................................................................................................	20	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................ATA-----A----------------TAA------------------A-------ATA-ATAATAATA----------------------A.....................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TA-----A----------------TAA------------------A-------ATA-ATAATAATA----------------------......................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TA-----A----------------TAA------------------A-------ATA-ATAATAATA----------------------ATA-------............................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GCAGGCGGCCGCATTGCCT..........................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GGGCAATCACACGGACTCCAAGAAGACCGGCAATGCTGGCGGCCGCATTGGTAAGTAG----------------------------TCTGGCCCAAACA-----GTACCAATGAA-T---G-----A----------------TCGCAAATAT---------A-----AT--------------GATG-------TTG-ATTTGTTTTG---A-ACTTTCTTTCAGCCTGCGGTGTTATTGGCATCAAGTAAATATCCCTTCCA-ATG-T---GTCAGCC----C--	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
GGGCAATCACACGGACTCC............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0
....AATCACACGGACTCCAAGA........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0

droYak3

GGGCAACCATACGGACTCCAAGAAGACTGGCAATGCAGGCGGCCGCATTGGTAAGTAG----------------------------TCTGGGTAAAACA-----TTATCAATAAA-T---G-----A----------------TCCCAAAAAT---------A-----AT--------------GATA-------CAT-ATATATTTTT---TAATTTTCTTGCAGCCTGCGGTGTGATTGGCATCAAGTAAATATCCCTTCCA-ACG-T---GTCAGCC----A--	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................AAGACTGGCAATGCAGGCGGCCGCATT..............................................................................................................................................................................................................................................	27	1	8.00	8	0	0	0	0	0	0	0	0	0	0	8
......................AAGACTGGCAATGCAGGCGGCCGCATTGCC...........................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1
...................................................................................................................................................................................................................................CTGCGGTGTGATTGGCATC.........................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

GGGCAACCACACGGATTCCAAGAAGACTGGCAATGCAGGCGGTCGCATTGGTAAGTTA----------------------------TTAAAT-----------------------------------------------------------TA-ATATACATAATTATAG-TTAAA-----------A---TAAT--------GTTT-----TTCCTATCTTACAGCCTGCGGTGTTATTGGCATCAAGTAAATATCCCATCCA-ACC-C---GACAGCC----A--	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GGGCAACCACACGGACTCCAAGAAGACCGGCAACGCAGGTGGCCGCATTGGTAAGAAA----------------------------TCGGAATT-----A-ACAT-----------TAAT-CAA------------------A-------TTC-ATAAAAGTA----------------------ATA-------AAC--TCTTTTCTT---TACTTCTCACACAGCCTGCGGTGTTATTGGCATCAAGTAAATATCCCTTCCA-ACG-C---AAAAGCA----A--	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GGGCAACCATACGGATTCCAAGAAGACCGGCAATGCAGGTGGCCGCATTGGTAAGTAA----------------------------TCTGATTTAACCA-----T-----------TAAT-CAA------------------A-------AACAATAAAAAT----------------------AATA-------TAC-ATTTTTTCTA---TACTTTCTAAACAGCCTGCGGTGTTATTGGCATCAAGTAAATATCCCTTCCA-ACG-C---AAAAGCC-------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GGGCAATCACACGGATTCCAAGAAGACTGGCAATGCAGGTGGCCGCATTGGTAAGATA----------------------------TCGGTGTT-----GTCAAT-----------TTAG-CAA------------------A-------ATC-ATATACATA----------------------ATA-------AAA-ATT------------TATTTTTTACAGCCTGCGGTGTCATTGGTATCAAGTAAATATCCCTTCCA-CTG-C---GACAGCC----A--	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CGGAAACCACACGGACTCCAAGAAGACTGGAAACGCAGGTGGCCGTATTGGTAAGCAT----------------------------TCGGAATT-----G-CAAA-----------TAAA-CAA------------------A-------ATC-ATATAATTA----------------------ATA-------CAA--------------ATTTATTTTTACAGCCTGCGGTGTTATTGGCATCAAGTAAATATCCCTTCCA-ACG-C---GACAGCC----A--	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGGCAACCACACGGATTCCAAGAAGACCGGCAATGCAGGTGGCCGCATTGGTAAGAAT----------------------------TCAAATA--ATTC---------------------------AT--------------------------------CTCTTAAAAG-CTCAA--AGAAGTAATG----AAT--------ATTCTC----TTCTTTCTTGCAGCCTGCGGAGTTATTGGTATCAAGTAAATATCCCTTCCA-AGG-C---GACAGCC----A--	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGGTAACCACACGGATTCCAAGAAGACTGGCAACGCTGGCGGCCGCATTGGTGGGTTTTTAATTGGAAA-----------------TCTTTT--GGGTTT---------------------------------------------TCCTTAAT---------T-----AT----------------TA----ATT----AATTCTTTTTAATTTATATCCTTACAGCCTGCGGTGTTATTGGTGTCAAGTAAATATCGCTTCCA-CCG-A---GACAGAC----AAA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GGGCAACCATACGGATTCCAAGAAGACTGGCAACGCAGGCGGACGAATTGGTAAGGAT----------------------------GTGGACT--AATAA------TGC------T--------TC--------------------A---------------------AC-GG----AAAATAA----CATTAAT----------CTTA---TTATTTCGTTTCAGCCTGCGGGGTTATTGGTATCAAGTAAATATCGCTTCCT-CCA-CAACAACAGAC----A--	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........TACGGATTCCAAGAAGACTGGCAAC.............................................................................................................................................................................................................................................................	25	1	37.00	37	4	33	0	0	0	0
...............TTCCAAGAAGACTGGCAACGCAGGCG......................................................................................................................................................................................................................................................	26	1	20.00	20	16	4	0	0	0	0
...............TTCCAAGAAGACTGGCAACGCAGGC.......................................................................................................................................................................................................................................................	25	1	19.00	19	3	14	1	1	0	0
................TCCAAGAAGACTGGCAACGCAGGCGG.....................................................................................................................................................................................................................................................	26	1	13.00	13	8	5	0	0	0	0
.....ACCATACGGATTCCAAGAAGACTGGC................................................................................................................................................................................................................................................................	26	1	12.00	12	5	7	0	0	0	0
............................................................................................................................................................................................................................................TATTGGTATCAAGTAAATATCGCT...........................	24	1	12.00	12	1	11	0	0	0	0
....................................................................................................................................................................................................................................................TCAAGTAAATATCGCTTCCT-CCA-CAAC..............	27	1	12.00	12	6	5	1	0	0	0
................TCCAAGAAGACTGGCAACGCAGGC.......................................................................................................................................................................................................................................................	24	1	11.00	11	6	5	0	0	0	0
................TCCAAGAAGACTGGCAACGCAGGCGGAC...................................................................................................................................................................................................................................................	28	1	10.00	10	6	4	0	0	0	0
............................................................................................T--AATAA------TGC------T--------TC--------------------A---------------------AC-GG----AAAATAA----CAT................................................................................................	27	1	10.00	10	4	6	0	0	0	0
............................................................................................T--AATAA------TGC------T--------TC--------------------A---------------------AC-GG----AAAATAA----CATT...............................................................................................	28	1	10.00	10	4	4	2	0	0	0
................TCCAAGAAGACTGGCAACGCAGGCG......................................................................................................................................................................................................................................................	25	1	10.00	10	8	1	1	0	0	0
.....................GAAGACTGGCAACGCAGGCGGACGA.................................................................................................................................................................................................................................................	25	1	10.00	10	5	5	0	0	0	0
.........TACGGATTCCAAGAAGACTGGCAACG............................................................................................................................................................................................................................................................	26	1	8.00	8	6	2	0	0	0	0
.............GATTCCAAGAAGACTGGCAACGCAGG........................................................................................................................................................................................................................................................	26	1	8.00	8	5	3	0	0	0	0
...............................................................................................................................................................................................................TA---TTATTTCGTTTCAGCCTGCGGGGT...................................................	26	1	8.00	8	7	1	0	0	0	0
.....ACCATACGGATTCCAAGAAGACTGG.................................................................................................................................................................................................................................................................	25	1	8.00	8	7	1	0	0	0	0
..................................................................................................................................................................................................T----------CTTA---TTATTTCGTTTCAGCCTGCGGGGT...................................................	29	1	8.00	8	6	2	0	0	0	0
.......CATACGGATTCCAAGAAGACTGGCAAC.............................................................................................................................................................................................................................................................	27	1	7.00	7	2	5	0	0	0	0
...........CGGATTCCAAGAAGACTGGCAACGC...........................................................................................................................................................................................................................................................	25	1	7.00	7	5	2	0	0	0	0
................TCCAAGAAGACTGGCAACGCAGG........................................................................................................................................................................................................................................................	23	1	7.00	7	4	3	0	0	0	0
.........................................................................................................................................................................................................................................................TAAATATCGCTTCCT-CCA-CAACAACAGA........	28	1	7.00	7	6	1	0	0	0	0
...............TTCCAAGAAGACTGGCAACGCAGG........................................................................................................................................................................................................................................................	24	1	6.00	6	5	1	0	0	0	0
..................................................................................................................................................................................................T----------CTTA---TTATTTCGTTTCAGCCTGCGGG.....................................................	27	1	6.00	6	4	2	0	0	0	0
............................................................................................................................................................................................................................................TATTGGTATCAAGTAAATATCGCTTCC........................	27	1	5.00	5	0	5	0	0	0	0
...............................................................................................................................................................................................TAAT----------CTTA---TTATTTCGTTTCAGCC...........................................................	24	1	5.00	5	1	4	0	0	0	0
...............................................................................................................................................................................................................TA---TTATTTCGTTTCAGCCTGCGGG.....................................................	24	1	5.00	5	2	3	0	0	0	0
.....................GAAGACTGGCAACGCAGGCGGACG..................................................................................................................................................................................................................................................	24	1	4.00	4	3	1	0	0	0	0
...............TTCCAAGAAGACTGGCAACGCAGGCGG.....................................................................................................................................................................................................................................................	27	1	4.00	4	4	0	0	0	0	0
...............................................................................................................................................................................................TAAT----------CTTA---TTATTTCGTTTCAGCCTGC........................................................	27	1	4.00	4	1	3	0	0	0	0
..........ACGGATTCCAAGAAGACTGGCAACG............................................................................................................................................................................................................................................................	25	1	4.00	4	4	0	0	0	0	0
....AACCATACGGATTCCAAGAAGACTGGC................................................................................................................................................................................................................................................................	27	1	4.00	4	2	2	0	0	0	0
.........................................................................................................................................................................................................................................................TAAATATCGCTTCCT-CCA-CAACAACAGAC----...	29	1	4.00	4	3	1	0	0	0	0
....AACCATACGGATTCCAAGAAGACTGG.................................................................................................................................................................................................................................................................	26	1	4.00	4	4	0	0	0	0	0
...........CGGATTCCAAGAAGACTGGCAAC.............................................................................................................................................................................................................................................................	23	1	4.00	4	0	4	0	0	0	0
................TCCAAGAAGACTGGCAACGCAGGCGGA....................................................................................................................................................................................................................................................	27	1	3.00	3	3	0	0	0	0	0
.........................................................................................................................................................................................................................TCGTTTCAGCCTGCGGGGTTATTGG.............................................	25	1	3.00	3	2	1	0	0	0	0
...........CGGATTCCAAGAAGACTGGCAACGCA..........................................................................................................................................................................................................................................................	26	1	3.00	3	3	0	0	0	0	0
..............................................................................................................................................................................................TTAAT----------CTTA---TTATTTCGTTTCAGCC...........................................................	25	1	3.00	3	0	3	0	0	0	0
................................................................................................................................................................................................AAT----------CTTA---TTATTTCGTTTCAGCCTGC........................................................	26	1	3.00	3	1	1	1	0	0	0
...............................................................................................................................................................................................................TA---TTATTTCGTTTCAGCCTGCGGGG....................................................	25	1	3.00	3	3	0	0	0	0	0
.......CATACGGATTCCAAGAAGACTGGCAACG............................................................................................................................................................................................................................................................	28	1	3.00	3	0	3	0	0	0	0
.....ACCATACGGATTCCAAGAAGACTGGCA...............................................................................................................................................................................................................................................................	27	1	3.00	3	3	0	0	0	0	0
...............TTCCAAGAAGACTGGCAACGCAGGCGGA....................................................................................................................................................................................................................................................	28	1	3.00	3	3	0	0	0	0	0
...............................................................................................................................................................................................TAAT----------CTTA---TTATTTCGTTTCAGCCT..........................................................	25	1	3.00	3	0	3	0	0	0	0
............................................................................................................................................................................................................................................TATTGGTATCAAGTAAATATCGCC...........................	24	1	3.00	3	0	3	0	0	0	0
.....ACCATACGGATTCCAAGAAGACTGGCAA..............................................................................................................................................................................................................................................................	28	1	3.00	3	2	1	0	0	0	0
.............................................................................................................................................................................................................................................ATTGGTATCAAGTAAATATCGCT...........................	23	1	3.00	3	0	3	0	0	0	0
.....................GAAGACTGGCAACGCAGGCGGAC...................................................................................................................................................................................................................................................	23	1	3.00	3	2	1	0	0	0	0
...........................TGGCAACGCAGGCGGACGAATTG.............................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................................TAAT----------CTTA---TTATTTCGTTTCAGCCTG.........................................................	26	1	2.00	2	2	0	0	0	0	0
...........................TGGCAACGCAGGCGGACGAATTGGTA..........................................................................................................................................................................................................................................	26	1	2.00	2	1	1	0	0	0	0
...................AAGAAGACTGGCAACGCAGGC.......................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0
............................................................................................T--AATAA------TGC------T--------TC--------------------A---------------------AC-GG----AAAATAA----C..................................................................................................	25	1	2.00	2	0	1	0	0	1	0
.......CATACGGATTCCAAGAAGACTGGCAA..............................................................................................................................................................................................................................................................	26	1	2.00	2	1	1	0	0	0	0
.................CCAAGAAGACTGGCAACGCAGGCGG.....................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
.........................................................................................................................................................................................................................................................TAAATATCGCTTCCT-CCA-CAACAACAG.........	27	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................................................................................................CTTA---TTATTTCGTTTCAGCCTGCGGG.....................................................	26	1	2.00	2	2	0	0	0	0	0
........ATACGGATTCCAAGAAGACTGGC................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	2	0
..................................................................................................................................................................................................................................................TATCAAGTAAATATCGCTTCCT-CCA-C.................	26	1	2.00	2	1	1	0	0	0	0
................TCCAAGAAGACTGGCAACGC...........................................................................................................................................................................................................................................................	20	1	2.00	2	1	1	0	0	0	0
..................................................................................................................................................................................................T----------CTTA---TTATTTCGTTTCAGCCTGCGGGG....................................................	28	1	2.00	2	1	1	0	0	0	0
....................................................................................................................................................................................................................................................TCAAGTAAATATCGCTTCCT-CCA-CA................	25	1	2.00	2	1	0	1	0	0	0
....................................................................................................................................................................................................................................................TCAAGTAAATATCGCTTCCT-CCA-C.................	24	1	2.00	2	1	1	0	0	0	0
...........................................................................................................................................................................................................................................TTATTGGTATCAAGTAAATATCGCT...........................	25	1	2.00	2	0	2	0	0	0	0
..........................................................................................................................................................................................................................CGTTTCAGCCTGCGGGGC...................................................	18	1	2.00	2	0	2	0	0	0	0
.........TACGGATTCCAAGAAGACTGGCAACGCA..........................................................................................................................................................................................................................................................	28	1	2.00	2	1	1	0	0	0	0
............................................................................................T--AATAA------TGC------T--------TC--------------------A---------------------AC-GG----AAAATAA----CA.................................................................................................	26	1	2.00	2	1	1	0	0	0	0
.....ACCATACGGATTCCAAGAAGACTG..................................................................................................................................................................................................................................................................	24	1	2.00	2	1	1	0	0	0	0
.................CCAAGAAGACTGGCAACGCAGGC.......................................................................................................................................................................................................................................................	23	1	2.00	2	1	1	0	0	0	0
.....................GAAGACTGGCAACGCAGGCGGACGAA................................................................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................................................................................TATCAAGTAAATATCGCTTCCT-CCA-CA................	27	1	2.00	2	1	1	0	0	0	0
...........CGGATTCCAAGAAGACTGGCAACG............................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
............................................................................................T--AATAA------TGC------T--------TC--------------------A---------------------AC-GG----AAAATA........................................................................................................	23	1	2.00	2	1	0	0	0	1	0
.............GATTCCAAGAAGACTGGCAACGCAGGC.......................................................................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0
......................................................................................................................................................................................................................................................AAGTAAATATCGCTTCCT-CCA-CAACAACA..........	29	1	1.00	1	1	0	0	0	0	0
................TCCAAGAAGACTGGCAACG............................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................TTCGTTTCAGCCTGCGGGGTTATTGG.............................................	26	1	1.00	1	0	0	1	0	0	0
...........................................................................................................................................................................................................................GTTTCAGCCTGCGGGGTTATTGG.............................................	23	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................TAAT----------CTTA---TTATTTCGTTTCAGCCTGCG.......................................................	28	1	1.00	1	1	0	0	0	0	0
........ATACGGATTCCAAGAAGACTGG.................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.....................GAAGACTGGCAACGCAGGCGGACGAAA...............................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
...............TTCCAAGAAGACTGGCAACGC...........................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................T----------CTTA---TTATTTCGTTTCAGCCTGCGG......................................................	26	1	1.00	1	1	0	0	0	0	0
GGGCAACCATACGGATTCCAAGAAGAC....................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..........ACGGATTCCAAGAAGACTGGCAACGCA..........................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.....................GAAGACTGGCAACGCAGGCGG.....................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..................................GCAGGCGGACGAATTGGTAAGGAT----------------------------.........................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................TTATTGGTATCAAGTAAATATCGCTT..........................	26	1	1.00	1	1	0	0	0	0	0
.........TACGGATTCCAAGAAGACTGGCAACGCAA.........................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................AAATATCGCTTCCT-CCA-CAACAACAG.........	26	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................AT----------CTTA---TTATTTCGTTTCAGCCTGCGGG.....................................................	28	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................TATTGGTATCAAGTAAATATCGCTTCCT-C.....................	29	1	1.00	1	1	0	0	0	0	0
....AACCATACGGATTCCAAGAAGACTG..................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..................CAAGAAGACTGGCAACGCAGG........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.........TACGGATTCCAAGAAGACTGGCAACGC...........................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................ATCAAGTAAATATCGCTTCCT-CCA-C.................	25	1	1.00	1	1	0	0	0	0	0
...............TTCCAAGAAGACTGGCAACGCAG.........................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...................................................TAAGGAT----------------------------GTGGACT--AATAA------TGC------T--------TC--------------------.............................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
...............................................TTGGTAAGGAT----------------------------GTGGACT--................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
....AACCATACGGATTCCAAGAAGACT...................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.........TACGGATTCCAAGAAGACTGGCAA..............................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
................TCCAAGAAGACTGGCAACGCAG.........................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................TCAGCCTGCGGGGTTATTGGTATC.........................................	24	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................AAATATCGCTTCCT-CCA-CAACAAC...........	24	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................GTATCAAGTAAATATCGCT...........................	19	1	1.00	1	0	1	0	0	0	0
...................................CAGGCGGACGAATTGGTAAGGAT----------------------------GT.......................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................TCAAGTAAATATCGCTTCCT-CCA-CAAA..............	27	1	1.00	1	1	0	0	0	0	0
.......CATACGGATTCCAAGAAGACTGGC................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................................................................TTCGTTTCAGCCTGCGGGGTTATT...............................................	24	1	1.00	1	1	0	0	0	0	0
............GGATTCCAAGAAGACTGGCA...............................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.........................................GACGAATTGGTAAGGAT----------------------------GTGGAC...................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...............TTCCAAGAAGACTGGCAACGCAGGCGGAC...................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................TATTTCGTTTCAGCCTGCGGGG....................................................	22	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................TGGTATCAAGTAAATATCGCTTCCT-CC....................	27	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................TTA---TTATTTCGTTTCAGCCTGCGGGGT...................................................	27	1	1.00	1	0	1	0	0	0	0
.................................................................................................TAA------TGC------T--------TC--------------------A---------------------AC-GG----AAAATAA----CATT...............................................................................................	25	1	1.00	1	0	0	0	0	0	1
..................................GCAGGCGGACGAATTGGTAAGGAT----------------------------G........................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...CAACCATACGGATTCCAAGAAGACTGG.................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................TTTCGTTTCAGCCTGCGGGGTTATTGGC............................................	28	1	1.00	1	1	0	0	0	0	0
..........ACGGATTCCAAGAAGACTGGCAAC.............................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................TGGTATCAAGTAAATATCGCTTCCT-......................	25	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................AATATCGCTTCCT-CCA-CAACAACAGAC----A--	28	1	1.00	1	1	0	0	0	0	0
......CCATACGGATTCCAAGAAGACTGG.................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
............................................................................................T--AATAA------TGC------T--------TC--------------------A---------------------AC-GG----AAAA..........................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...........................TGGCAACGCAGGCGGACGAATTGG............................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................TATCGCTTCCT-CCA-CAACAACAGA........	24	1	1.00	1	1	0	0	0	0	0
................TCCAAGAAGACTGGCAACGCAGGG.......................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
......................AAGACTGGCAACGCAGGCGGAC...................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
...............TTCCAAGAAGACTGGCAACGCAGGCGT.....................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................T----------CTTA---TTATTTCGTTTCAGCCTGCG.......................................................	25	1	1.00	1	0	1	0	0	0	0
.....................GAAGACTGGCAACGCAGGCGGACT..................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...................AAGAAGACTGGCAACGCAGGCGGA....................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
................TCCAAGAAGACTGGCAACGCAGGCGT.....................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...................................CAGGCGGACGAATTGGTAAGGAT----------------------------.........................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
........................GACTGGCAACGCAGGCGGACGAAT...............................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
....AACCATACGGATTCCAAGAAGA.....................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..................CAAGAAGACTGGCAACGCAGGCGGAC...................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.........TACGGATTCCAAGAAGACT...................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
............GGATTCCAAGAAGACTGGCAACGCAG.........................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................TTAAT----------CTTA---TTATTTCGTTTCAGCCC..........................................................	26	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................TATCAAGTAAATATCGCTTCCT-CCA-CAAC..............	29	1	1.00	1	0	1	0	0	0	0
..................................GCAGGCGGACGAATTGGTAAGGA......................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.....ACCATACGGATTCCAAGAAGACTGGCAAC.............................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
...........................TGGCAACGCAGGCGGACGAATTGGTAA.........................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..................CAAGAAGACTGGCAACGCAGGCGG.....................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.................CCAAGAAGACTGGCAACGCAGG........................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................TAAATATCGCTTCCT-CCA-CAACAAC...........	25	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................TTAAT----------CTTA---TTATTTCGTTTCAGCCTGC........................................................	28	1	1.00	1	1	0	0	0	0	0
...........CGGATTCCAAGAAGACTGG.................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................TTTCGTTTCAGCCTGCGGGGTTATTG..............................................	26	1	1.00	1	1	0	0	0	0	0
.......................................................................................TGGACT--AATAA------TGC------T--------TC--------------------A---------------------AC-GG----AAAA..........................................................................................................	26	1	1.00	1	1	0	0	0	0	0
......................................................................................GTGGACT--AATAA------TGC------T--------TC--------------------A---------------------AC-GG----AAAAT.........................................................................................................	28	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................TATTGGTATCAAGTAAATATCGCTT..........................	25	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................T----------CTTA---TTATTTCGTTTCAGCCTGCGGGA....................................................	28	1	1.00	1	1	0	0	0	0	0
...................................................TAAGGAT----------------------------GTGGACT--AATAA------TGC------T--------TC--------------------A---------------------.......................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.....ACCATACGGATTCCAAGAAGAC....................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.....................................GGCGGACGAATTGGTAAGGAT----------------------------GTGGAC...................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................TAAATATCGCTTCCT-CCA-CAACAACA..........	26	1	1.00	1	1	0	0	0	0	0
.................................CGCAGGCGGACGAATTGGTAAGG.......................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
............GGATTCCAAGAAGACTGGCAACGC...........................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................TCAGCCTGCGGGGTTATTGGTATCAAG......................................	27	1	1.00	1	0	1	0	0	0	0
..........................................ACGAATTGGTAAGGAT----------------------------GTGGACT--................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................TATCGCTTCCT-CCA-CAACAACAGAC----A--	26	1	1.00	1	1	0	0	0	0	0
.......................................................................................TGGACT--AATAA------TGC------T--------TC--------------------A---------------------AC-GG----AAAAT.........................................................................................................	27	1	1.00	1	1	0	0	0	0	0
......CCATACGGATTCCAAGAAGACTGGCAA..............................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
...CAACCATACGGATTCCAAGAAGACTG..................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................AATATCGCTTCCT-CCA-CAACAACA..........	24	1	1.00	1	1	0	0	0	0	0
..............ATTCCAAGAAGACTGGCAACGCAGGC.......................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
...................................................TAAGGAT----------------------------GTGGACT--AATAA------TGC------T--------TC--------------------A---------------------AC-....................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................TCAAGTAAATATCGCTTCCT-CCA-CAA...............	26	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................TTA---TTATTTCGTTTCAGCCTGCG.......................................................	23	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................CTTA---TTATTTCGTTTCAGCCTGCGG......................................................	25	1	1.00	1	1	0	0	0	0	0
............GGATTCCAAGAAGACTGGCAACGCA..........................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
....AACCATACGGATTCCAAGAAGACTGGCA...............................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................TTTCAGCCTGCGGGGTTATTGG.............................................	22	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................TATCGCTTCCT-CCA-CAACAACAGAC----...	25	1	1.00	1	0	1	0	0	0	0
............................GGCAACGCAGGCGGACGAATTGGTAA.........................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................T----------CTTA---TTATTTCGTTTCAGCC...........................................................	21	1	1.00	1	0	1	0	0	0	0

droBip1

GGGTAACCACACGGACTCTAAGAAGACTGGCAACGCAGGTGGACGTATTGGTAAGGAC----------------------------ATGGAA-----TAG-TAAT-------------------TT--------------------A---------------------AC-AG----AAATTCT----TATTAAT----------CTTG---TTATTTCCTTTCAGCCTGCGGTGTTATTGGTATCAAGTAAATATCGCTTCCT-CCA-CAACAAACGCC----A--	Size	Hit Count	Total Norm	Total
No Reads

dp5

GGGAGATCACGTCGACTCCAAGAAGACGGGCAATGCAGGAGGCCGTATCGGTGAGGAG----------------------------TCTCCA--GAATGT------CTC------T--------TT--------------------A---------------------ATTGG----TTAATTC----TATAAAT--------A--CT----TTTTTCCCTTGCAGGCTGCGGTGTGATTGGTGTCAAGTAAATATCTCTCTCTTCCATCAAAGAAAGACA---A--	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...AGATCACGTCGACTCCAAGAAGACGGGCA...............................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.......CACGTCGACTCCAAGAAGACGGGCA...............................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................GACGGGCAATGCAGGAGGCCGTA................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
......................AAGACGGGCAATGCAGGA.......................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................CGGGCAATGCAGGAGGCCGTATCG.............................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................GAAGACGGGCAATGCAGGAGGC....................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........GTCGACTCCAAGAAGACGGGCAATG............................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................AATATCTCTCTCTTCCATCAAAGAA...........	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................GCTGCGGTGTGATTGGTGT..........................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................AGACGGGCAATGCAGGAGGC....................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................CCAAGAAGACGGGCAATGCAGGA.......................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0

droPer2

GGGAGATCACGTGGACTCCAAGAAGACGGGCAATGCAGGAGGCCGTATCGGTGAGGAG----------------------------TCTCCA--GAATGT------CTC------T--------TT--------------------A---------------------ATTGG----TTAATTC----TATAAAT--------A--CT----TTATTCCCTTGCAGGCTGCGGTGTGATTGGTGTCAAGTAAATATCTCTCTCTTCCATCAAAGAAAGACA---A--	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................................................................................................................................................................................................................................................GTCAAGTAAATATCTCTCT.........................	19	1	4.00	4	4	0	0	0	0	0
......TCACGTGGACTCCAAGAAGAC....................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
........ACGTGGACTCCAAGAAGACGGG.................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
......TCACGTGGACTCCAAGAAGACG...................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
....GATCACGTGGACTCCAAGAAGACGGGC................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.....ATCACGTGGACTCCAAGAAGACGGGC................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0

droWil2

TGGTAATCATACAGATTCCAAAAAGACTGGCAATGCAGGCGGAAGAGTTGGTATGTAG----------------------------CCTCAAACAAATG---------------------------ATTT-------------TCGA---AAT-A-------------AATTG----TTAA---TATATATATAT--------ATTTTT----CTGTTCATTTCAGCCTGCGGAGTTATTGGTGTCAAGTAAATATCA----------------AAAGCCAAGCA--	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....................AAAGACTGGCAATGCAGGC.......................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
................TCCAAAAAGACTGGCAATGCA..........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.......CATACAGATTCCAAAAAGA.....................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................CTGCGGAGTTATTGGTGT..........................................	18	1	1.00	1	0	0	0	1	0
.......CATACAGATTCCAAAAAGACTGGC................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
.....................AAAGACTGGCAATGCAGG........................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................GGTGTCAAGTAAATATCA----------------AAAGCCAA.....	26	1	1.00	1	0	0	0	1	0
..........................CTGGCAATGCAGGCGGAAGAGTTGCCT..........................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
................................ATGCAGGCGGAAGAGTTGCCT..........................................................................................................................................................................................................................................	21	2	0.50	1	0	0	1	0	0

droVir3

GGGCAACCACACGGACTCCAAAAAGACGGGCAATGCGGGCGGCCGTATTGGTGCGTAC----------------------------TTGAATAT-----A-CTTC-----------TCGT-CCG------------------A-------ATC-GA----------------------AATACTTATA----AAT--------A--CC----CTTTCTCTTTGCAGCCTGCGGTGTTATTGGCATTAAGTAAATATCC-----------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...CAACCACACGGACTCCAAAAAGACGGG.................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................GCCTGCGGTGTTATTGGCATTAA.......................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......CCACACGGACTCCAAAAAGACGGGCA...............................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CACACGGACTCCAAAAAGAC....................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GGCAACCACACGGACTCCAA..........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CACGGACTCCAAAAAGACGGGC................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GGGCAATCACACCGACTCAAAGAAGACGGGCAATGCTGGCGGCCGCATCGGTGCGTAT---------------------------------AACAAAAG---------------------------CTTTGCAACTAGTCCCA-------------------T-----AT----------------TA----AAT----ATCCTTTTCTGA-TTTTCTCTTTACAGCCTGCGGTGTTATTGGCATTAAGTAAATATCTGTT--------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................................................................................................................................................................................................TTCTGA-TTTTCTCTTTACAG.............................................................	20	1	1.00	1	0	1	0	0	0	0
......................AAGACGGGCAATGCTGGCGGCCGC.................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.................CAAAGAAGACGGGCAATGCTGGCGGC....................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0

droGri2

GGGCAATCACACGGACTCCAAGAAGACCGGCAATGCTGGCGGCCGCATCGGTAAGCCTCACACAAAACAACTTTATTTAAACCCATTT----------------------------------------------------------AAATAAT---------A-----AT--CACACA------AATG-------TTT-CTTCTTCTTT---TATTTTTCTTTCAGGTTGCGGTGTTATTGGCATTAAGTAAATATC------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...................AAGAAGACCGGCAATGCTGGCGGCC...................................................................................................................................................................................................................................................	25	2	0.50	1	1	0

dsi_3939

2r:7979171-7979237 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-11.5	-10.8	-10.6