ID:

dsi_393

 Coordinate:

3r:4659398-4659547 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3r_4659177_4659397_+]; CDS [3r_4659177_4659397_+]; intron [3r_4659398_4659764_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGGCAACCGCAGCAGGTCCTAAACACCGGCAACATTCAGCAGGAGCGCGCGTAAGTGCCCGTCTATCTTATCACTGCCACTGGCAATCATTATCCATCAATGGAGCTTTGGGGTATATGAGTTAAAATGTCATAAATAAATCATAAAAGTGAAGGGAGGTAATTGTTGTACCTCAAACCTAAGGCTTGAATTAGTAAAGAAGTCTATAAATTAGGCATAGTGACATTTTCATACAGGCAATGTGATGTGA
**************************************************(((((...........)))))...((((...)))).......((((....))))((((((((...(((((.........)))))......((((....))))...((((((.......))))))...))))))))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 O001
Testis
 O002
Head
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
...........................................................................................................................................................................................GAATTAGTAAAGAAGTCT............................................. 18 0 1 1.00 1 0 0 1 0 0 0 0
..................CTAAACACCGGCAACATT...................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................TGAGTTAAAGCGTCAAAAATA................................................................................................................ 21 3 6 0.67 4 0 0 0 0 4 0 0
...............................................................................................................................................TGAAAGTGAACGGAGGTA......................................................................................... 18 2 4 0.50 2 2 0 0 0 0 0 0
.................................................................................................................................................AAAGTGAACGGAGGTA......................................................................................... 16 1 4 0.50 2 2 0 0 0 0 0 0
..................................................................................................................................................AAGTGAACGGAGGTA......................................................................................... 15 1 5 0.40 2 2 0 0 0 0 0 0
......................................GAAGTAGCGCGCGTGAGTGC................................................................................................................................................................................................ 20 3 3 0.33 1 0 0 0 1 0 0 0
....................................................................................................................ATGAGTTAAAAAGTCA...................................................................................................................... 16 1 4 0.25 1 0 0 0 1 0 0 0
..............................................................................................................................................ATAAAAGTGAACGGAGGTG......................................................................................... 19 2 4 0.25 1 0 0 0 0 0 1 0
.................................................................................................................................................AAAGTGAACGGAGGT.......................................................................................... 15 1 14 0.21 3 3 0 0 0 0 0 0
............................................................................................................................................TAATGAAAGTGAACGGAGGTA......................................................................................... 21 3 5 0.20 1 1 0 0 0 0 0 0
......................................................................................................................GAGTTAAAGCGTCAAAAATA................................................................................................................ 20 3 20 0.15 3 0 0 0 0 3 0 0
..................................................................................................................................................................................TTAAGGCTTGAATTAG........................................................ 16 1 8 0.13 1 0 0 0 0 0 0 1
...............................................................................................................................................TAAAAGTTAAGGGCGGTA......................................................................................... 18 2 8 0.13 1 0 0 0 1 0 0 0
...............................................................................................................................................TGAAAGTGAACGGAGGTAG........................................................................................ 19 3 17 0.12 2 1 0 0 0 0 1 0
............................................................................................................................................TAATGAAAGTGAACGGAGGT.......................................................................................... 20 3 11 0.09 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................ACAGGCAAGGTGTTGTG. 17 2 13 0.08 1 0 0 0 1 0 0 0
..............................................................................................................................................ATGAAAGTGAACGGAGGTGA........................................................................................ 20 3 15 0.07 1 1 0 0 0 0 0 0
.GATAACCGCAGCAGGTC........................................................................................................................................................................................................................................ 17 2 16 0.06 1 0 0 0 1 0 0 0
.....................................................................................................................TGAGTTAAAATGGCA...................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

CCCGTTGGCGTCGTCCAGGATTTGTGGCCGTTGTAAGTCGTCCTCGCGCGCATTCACGGGCAGATAGAATAGTGACGGTGACCGTTAGTAATAGGTAGTTACCTCGAAACCCCATATACTCAATTTTACAGTATTTATTTAGTATTTTCACTTCCCTCCATTAACAACATGGAGTTTGGATTCCGAACTTAATCATTTCTTCAGATATTTAATCCGTATCACTGTAAAAGTATGTCCGTTACACTACACT
**************************************************(((((...........)))))...((((...)))).......((((....))))((((((((...(((((.........)))))......((((....))))...((((((.......))))))...))))))))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR618934
dsim w501 ovaries
.....TGGCGTCGTCCAGGATTTGTG................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............CAGAAATTGTGGCCGTTG......................................................................................................................................................................................................................... 18 2 7 0.43 3 0 2 0 1 0 0 0 0 0
...................................................................................................................................................................................................................ATCGGCAACACTGTAAAAGTAT................. 22 3 3 0.33 1 0 0 1 0 0 0 0 0 0
..........................GCCATTGTAAGTAGTCATC............................................................................................................................................................................................................. 19 3 13 0.23 3 0 2 0 0 0 0 0 1 0
...................................................................................................................ATACGCAATTTTACAG....................................................................................................................... 16 1 9 0.22 2 0 0 0 0 1 0 1 0 0
................................................................................TCCGTTAGTAATAGG........................................................................................................................................................... 15 1 8 0.13 1 0 0 0 0 0 1 0 0 0
...............CAGGATCTGTGGTGGTTGTA....................................................................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................TTAGTATGTTCACTT................................................................................................. 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0
.....................................................................TAGTGACGGTGACGG...................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1

Generated: 04/24/2015 at 10:21 AM