ID:

dsi_3899

 Coordinate:

3l:8237358-8237504 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

five_prime_UTR [3l_8237542_8237989_-]; CDS [3l_8237505_8237541_-]; exon [3l_8236795_8237357_-]; CDS [3l_8236795_8237357_-]; exon [3l_8237505_8237989_-]; intron [3l_8237358_8237504_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAATCAATCAAACATGAATACCCAATCGAAGGTGTACCGTATCGGCGAAGGTAAGTCCGAAATTGGGTCTCTTATTAATCTAGTTTATATATATAAGTCCTTGCCTTGCTTAAAACATTTAAAGGGGTTAAACTATTTGGCACGTTGTTATTTCAGTCCTTATAATGTTTGATTTTATTTCCCCTGCAATGCTGCAGAAATCTATGACAACTTGCCATGCGATAGTTATTTCAACATGAATGCCGTT
**************************************************.(((((........(((.((..(((...............)))..)).)))......)))))...((((...((((((((((((((..((.((............))))..)))..))))))........)))))..))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 GSM343915
embryo
 M023
head
 O001
Testis
 SRR553488
RT_0-2 hours eggs
....................CCCAATCGAAGGTGTACCGTATCGGCGA....................................................................................................................................................................................................... 28 0 1 3.00 3 1 0 2 0 0 0 0 0
.............................AGGTGTACCGTATCGGCGAAGAAA.................................................................................................................................................................................................. 24 2 1 2.00 2 0 0 0 2 0 0 0 0
.......TCAAACATGAATACCCAATCGAAGG....................................................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0
.....................CCAATCGAAGGTGTACCGTATCGGCGA....................................................................................................................................................................................................... 27 0 1 2.00 2 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................TGTATGACAACTTGCCATGCGATAGT..................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0
.........................TCGAAGGTGTACCGTATCGGCGAAGAA................................................................................................................................................................................................... 27 2 1 1.00 1 0 0 0 1 0 0 0 0
......ATCAAACATGAATACCCAATCGAAGG....................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1
..............................GGTGTACCGTATCGGCGA....................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................TCGAAGGTGTACCGTATC............................................................................................................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0
...................ACCCAATCGAAGGTGTACCGTATCGGCGA....................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................AATCGAAGGTGTACCGTATCCGC......................................................................................................................................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0
........................ATCGAAGGTGTACCGTATCGGC......................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0
...........................GAAGGTGTACCGTATCGGCGAAGAA................................................................................................................................................................................................... 25 2 1 1.00 1 0 1 0 0 0 0 0 0
............................AAGGTGTACCGTATCGG.......................................................................................................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0
...............GAATACCCAATCGAAGGT...................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0
.......TCAAACATGAATACCCAATCGAAG........................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0
....................CCCAATCGAAGGTGTACC................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0
.........AAACATGAATACCCAATCGAAGGT...................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................ATCTATGACAACTTGCCATGCGATAGT..................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................GGTAGGTATTGCAACATGAA....... 20 3 5 0.20 1 0 0 1 0 0 0 0 0
........................................................................................................................AAAGCGGTTAAACTATA.............................................................................................................. 17 2 20 0.05 1 0 1 0 0 0 0 0 0
.................................GTAACGTATCGGCGAT...................................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0
..................................TCCCGTACCGGCGAAG..................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0

Anti-sense strand reads

GTTAGTTAGTTTGTACTTATGGGTTAGCTTCCACATGGCATAGCCGCTTCCATTCAGGCTTTAACCCAGAGAATAATTAGATCAAATATATATATTCAGGAACGGAACGAATTTTGTAAATTTCCCCAATTTGATAAACCGTGCAACAATAAAGTCAGGAATATTACAAACTAAAATAAAGGGGACGTTACGACGTCTTTAGATACTGTTGAACGGTACGCTATCAATAAAGTTGTACTTACGGCAA
**************************************************.(((((........(((.((..(((...............)))..)).)))......)))))...((((...((((((((((((((..((.((............))))..)))..))))))........)))))..))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
............................................................................................................................................................................AAAATAAAGGGGCCGTTA......................................................... 18 1 2 0.50 1 1

Generated: 04/24/2015 at 10:46 AM