dsi_3866

five_prime_UTR [x_7353365_7353533_-]; exon [x_7353365_7353533_-]; five_prime_UTR [x_7353078_7353267_-]; exon [x_7352834_7353267_-]; intron [x_7353268_7353364_-]

##################################################-------------------------------------------------------------------------------------------------################################################## TATCAACACAGCTATCACGACGCTGGGGAGAAATCACTCGTTTTTATTACGTAATGCGGCAAAATATCAACCCATAACATAACAATCCCCACATCAATTTGTGTAAATCATATGTAAATCTCGCCATCTCCTGTGCTTGTCTTGCAGACCTATGGGCAGTGGGATTGTGGTTCAATTGGCTCGAAAGTACGGCGCAG ************************************************....((((((((..............(((((........((((......)))).......)))))......(((........))).)))))..))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	M053 female body	SRR902009 testis	M024 male body	SRR902008 ovaries	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo	M023 head	SRR618934 dsim w501 ovaries
................................................................................................................................................................GGGATTGTAGTTCAAT.....................	16	1	3	6.33	19	7	8	1	0	0	0	0	3	0	0	0
................................................................................................................................................................GGGATTGTAGTTCAATCGG..................	19	2	1	6.00	6	4	1	1	0	0	0	0	0	0	0	0
................................................................................................................................................................GGGATTGTAGTTCAATTGG..................	19	1	1	3.00	3	2	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................GGGATTGTAGTTCAATTGGTC................	21	3	2	2.50	5	2	3	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TGGTTCAATTGGCTCGAAAGTACGG.....	25	0	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................TGGGCAGTGGGATTGTGGTTCAAT.....................	24	0	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0
..............................................TTACGTAATGCGGCAAAATAT..................................................................................................................................	21	0	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0
...CAACGCAGCTATCACGACGCT.............................................................................................................................................................................	21	1	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.....................................................................................................TGTAAATCATATGTAAATCTCGCCA.......................................................................	25	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................GGGATTGTAGCTCAATTGG..................	19	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................TGGGCAGTGGGATTGTGGTTCAATT....................	25	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............TATCACGACGCTGGGGAG.......................................................................................................................................................................	18	0	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................GGTTCAATTGGCTCGAAAGTACGGCGCA.	28	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................TTGTGGTTCAATTGGCTCGAAAGTAC.......	26	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0
.................................................................................................................................................AAACCTATGGGCAGTGGGA.................................	19	1	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................ATTGTGGTTCAATTGGCTC...............	19	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................GGGATTGTAGTTCAATTGGT.................	20	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TGGTTCAATTGGCTCGAAAGTACG......	24	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................TTGCAGACCTATGGGCAGTGG...................................	21	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................GGGATTGTAGTTCAATTG...................	18	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................CAGACCTATGGGCAGTGGGAT................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ACCTATGGGCAGTGGGATTGTGGTT.........................	25	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................GGCAGTGGGATTGTGGT..........................	17	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................TTGGCAGTGGGATTGTGGTTCAATTGGC.................	28	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............TATCACGACGCTGGGGAGAA.....................................................................................................................................................................	20	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................ATTGGCTCGAAAGTACGGCGC..	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................TTGGCTCGAAAGTACGGCGCA.	21	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................TGTGGTTCAATTGGCTCGAAAGTACGG.....	27	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................TGGGATTGTGGTTCAATTGGCTCGAAAG..........	28	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................GGGACTGTAGTTCAATTGG..................	19	2	2	1.00	2	1	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................ACCTATGGGCAGTGGGATTGTG............................	22	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0
...................................................................................................................................TGTGCTTGTCTTGCAGACCTATGGGCAG......................................	28	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................TGTGCTTGTCTTGCAGACCTATGGGC........................................	26	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1
................................................................................................................................................................GGGATTGTAGTTCAA......................	15	1	10	0.90	9	5	4	0	0	0	0	0	0	0	0	0
................................................................................................................................................................GGGACTGTAGTTCAATTGGTT................	21	3	4	0.50	2	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................GTAAATCTCGTCATCACC..................................................................	18	2	6	0.17	1	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................ATGGGCAGTGGGATTTCGGC..........................	20	3	14	0.07	1	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................GGGACCGTAGTTCAATTG...................	18	3	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0

ATAGTTGTGTCGATAGTGCTGCGACCCCTCTTTAGTGAGCAAAAATAATGCATTACGCCGTTTTATAGTTGGGTATTGTATTGTTAGGGGTGTAGTTAAACACATTTAGTATACATTTAGAGCGGTAGAGGACACGAACAGAACGTCTGGATACCCGTCACCCTAACACCAAGTTAACCGAGCTTTCATGCCGCGTC ************************************************....((((((((..............(((((........((((......)))).......)))))......(((........))).)))))..))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR902009 testis	M053 female body	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
.....................................................................................AGGGGTGTAGTTAAACACATT...........................................................................................	21	0	1	1.00	1	1	0	0	0	0	0
.......................ACCCGTCTTTAGTGTGCA............................................................................................................................................................	18	2	2	0.50	1	0	1	0	0	0	0
....................GCGACCCGTCTTTAGTG................................................................................................................................................................	17	1	6	0.33	2	0	2	0	0	0	0
................................................................................TTGTTAGCGGTGTAGTTAC..................................................................................................	19	2	6	0.17	1	0	0	0	1	0	0
...........................................................................TTGTATTGGTAGAGTTGTAGT.....................................................................................................	21	3	6	0.17	1	0	0	1	0	0	0
....................GCGACCCGTCTTTAG..................................................................................................................................................................	15	1	19	0.11	2	0	2	0	0	0	0
.....................................................................................AGGAGTGTAGTTAAA.................................................................................................	15	1	10	0.10	1	0	0	0	0	1	0
..................TTGCGCCCCCTCTTTACTG................................................................................................................................................................	19	3	15	0.07	1	0	0	0	0	0	1
.........................................................................................................TTAGTATACATCTTGAG...........................................................................	17	2	20	0.05	1	0	0	1	0	0	0

Species	Coordinate	ID	Alignment
droSim2	x:7353218-7353414 -	dsi_3866	TATCAACA------CAGCTAT---CACGACGC----------TGG----GGAGAAATCACTCGTTTTTATTACGTAAT-----GCGGCAAAA--------TATCA--------A-CCCATAACATAACAA-----------------TCCC---------------------CACATC--AA--TTTGTGT------AAAT-CATATGTAAATCTCGCCATCT-CCTG-TGCTTGT-------CTTGCAGACC-TATGGGCAGTGGG------ATTGTGGTTCAATTGGCTCGAAAGTACGGCGCAG
dm3	chrX:7787474-7787669 -		TATCAACA------CAGTTAT---CACGACGC----------T-G----GGAGAAATCACTCGTTTTTATTACGTAAT-----GCGGCAAAA--------TGTCA--------A-CCCATAACATAACAA-----------------TCCC---------------------CACATC--AA--TTTGTGT------AAAT-CATATGTAAATCTCGCCATCT-CCTG-TGCTTGT-------CTTGCAGACC-TATGGGCAGTGGG------ATTGTGGTTCAATTGGCTCGAAAGTACGGCGCAG
droEre2	scaffold_4690:16701138-16701331 -		TATCAACA------GAATTAA---CACGCCAC----------TGG----GGAGAGATCACTCGTTTTTATTACGTAAT-----CCGGCAAAA--------T------------A-CTCATAACATAACAAA----------------TCCC---------------------CACATC--AA--TTTGTGT------AAAT-CATATGTAAATCTCGCCATCT-CGTG-TGCTTGT-------CTTGCAGACC-TATGGGCAGTGGG------ATTGTGGTTCAATTGGCTCGAAAGTACGGCGCAG
droYak3	X:13523662-13523857 +		TTTCAACA------GAATTAA---CACGCCGC----------TGG----GGAGAGATCACTCGTTTTTATTACGTAAT-----CCGGCAAAA--------T------------A-CCCATAACATAACAAA----------------TCCC---------------------CACATC--AA--TTTGTGTGT----AAAT-CATATGTAAATCTAGCCATCT-CGTG-TGCTTGT-------CTTGCAGACC-TATGGGCAGTGGG------ATTGTGGTTCAATTGGCACGAAAGTACGGCGCAG
droEug1	scf7180000409830:40095-40288 -		AACTAATA------GAAATAA---CTCGTCGC----------TTG----GGAGATATCAGTCATTTTCATTACGTAAT-----CCGGCAAAA--------G-TCT--------CCTCCATAACATAACAAA----------------TCGC------------------ACACACATCAC-A--TTTGTGTCTCATA-AATCC--------------GCATCT-CGTG-TGCTTGT-------CTTGCAGACC-TATGGGCAGTGGG------ATTTTGGTGCAATTGGCTCGAAAGTACGGCGCAG
droBia1	scf7180000301774:29646-29841 +		AACGCACT------GATCCAA---CACGCCGC----------TTG----GGAGTTATCAGTCATTTTCATTACGTAAT-----CCGGCAAAA-G------TC--T--------C-ACCATAACATAGTAGA----------------ACCCCAGCG----------------CACATTACCA--TCTGTGTCTCACA-AATCC--------------CCATCT-CGTG-TGCTTGT-------CTTGCAGACC-TATGGGCAGTGGG------ATTGTGGTGCAATTGGCTCGAAAGTACGGCGCAG
droTak1	scf7180000415262:100963-101133 -		AACCGACT------AAATAAA---CACGTCGC----------TCG----GGAGATTTCAGTCATTTTCATTACGTAAC---------------------------------------------ATAACAAA----------------ACCCCATTT----------------AACATTAC-A--T-TCAGTCTCATA-AATC---------------CCATCT-CGTG-TGCTTGT-------CTTGCAGACC-CATGGGCAGTGGG------ATTGTGGTGCAATTGGCTCGAAAGTACGGCGCAG
droEle1	scf7180000491044:665542-665729 +		AACCAGCC------AACTTAA---CACGCCAC----------TGG----GGAGATATCAGTCATTTTCATTACGTAAT-----CCGGCAAAA--------TCTCACACAATTTA-CCCA-----------A----------------TAAC----------------------ATAACAC-A--TTTGTGTCTCATA-AATCCAT--------------ATATCCGTG-TGCTTGT-------CTTGCAGACC-TATGGGCAGTGGG------ATTGTGGTGCAATTGGCTCGAAAGTACGGCGCAG
droRho1	scf7180000779479:31419-31602 +		AAGCAACC------AAATTAA---CACACCGC----------TTG----GGAAATATCAGTCATTTTCATTACGTAAT-----TCGACAAA---------TCTAACACAATTTA-CCCAGAACATAACA--------------------------------------------------C-A--TTTGTGTCTCATA-AATCCAT--------------ATAT-CGTG-TGCTTGT--------TTGCAGACC-TATGGGCAGTGGG------ATTGTGGTGCAATTGGCTCGAAAGTACGGCGCAG
droFic1	scf7180000454045:1252897-1253088 -		TTTAAATT-------AATCAA---CGAACCGC----------CTG----GGAGATATCACTCATTTTCATTACGTAAT-----CCGGCAAAA-GT-----TGTGT--------C-CCCATAACATAACAAA----------------TCCC----------------------ATAACAC-A--TTTGTGTCTAACA-AAAA---------------CCATCT-CGTGCTGTTTGT-------CTTGCAGAACTTATGGGCAGTGGG------ATTGTGGTGCAATTGGCTCGAAAGTACGGCGCAG
droKik1	scf7180000302344:655508-655574 -		C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG-TGTTTGT-------GTTGCAGACC-TATGGGCAGTGGG------ATTGTGGTGCAATTGGCTCGAAAGTACGGCGCAG
droAna3	scaffold_13117:1559363-1559539 +		CACCATTA------CCATCATCAGACACCCGC-----------------------ATCAAGCATTTTCATTACGTAACTGCATGCTGCATA----------------------------GA-------ATATCCCACTTGCCGTTTAAACC---------------------CACATC--GA--T-TGTGT------TGT---------------------------TCTGTTTCTGTAATCCATTCCAGACC-TATGGGCAGTAGC------ATTGTGGTGCAATTGGCTCGAAAGTACGGCGCAG
droBip1	scf7180000396425:557276-557457 -		G-CAGACACCATTAACTTCACCAGACACCCGC-----------------------ATCAAGCATTTTCATTACGTAACTGCATGCAGCATAG--------A---------------------------ATCTCCCACTTGCCGTCTATACC---------------------CACATC--GA--T-TGTGT------TGT---------------------------TCTGTTTCTGTTATCCATTCCAGACC-TATGGGCAGTAGC------ATTGTGGTGCAATTGGCTCGAAAGTACGGCGCAG
dp5	XL_group1e:12298465-12298656 +		TGCCAACA------CCG--------CACTCCCATCTAACAAATGAAAAAGAGTCTGCCTGTCATTTCCATTACGTAAT-----CCAA----ACATCAGTG--------------CT----------------------------------CCACCACACTCTGACTTCCCTACGCACCAT-ATCCTCATGTCTCATA----------------------------TTG-TGTTTGT-------TTTACAGACT-TATGGGCAGTAGT------GTTGTCTCGCAATTGGCTCGAAAGTACGCTGCAG
droPer2	scaffold_14:1308791-1308982 -		TGCCAACA------CCG--------CACTCCCATCTAACAAATGAAAAAGTGTCTGCCTGTCATTTCCATTACGTAAT-----CCAA----ACATCAGTG--------------CT----------------------------------CCACCACGCTCTGACTTCCCTACGTACCAT-ATCCTCATGTCTCATA----------------------------TTG-TGTTTGT-------TTTACAGACT-TATGGGCAGTAGT------GTTGTCTCGCAATTGGCTCGAAAGTACGCTGCAG
droWil2	scf2_1100000004909:9680419-9680483 +		T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACAGACCTTATGGGCAGTGGCAGCAATATTGTCACCCAATTGGCAAGAAAGTACGGTGCAG
droVir3	scaffold_12928:3320640-3320692 +		-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATACA-TATGGGCAGTAGC------GTCATCTTACAGCTGGCGCGAAAGTACGGTGCAG
droMoj3	scaffold_6308:3231110-3231162 +		-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATACA-TATGGGCAGTAGC------ATCATCTCGCATCTGGCGCGAAAGTACGGTGCAG
droGri2	scaffold_14853:119748-119794 -		--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGGGCAGTAGC------ATAATAACGCAGTTGGCGCGAAAGTACGGTGCAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TATCAACA------CAGCTAT---CACGACGC----------TGG----GGAGAAATCACTCGTTTTTATTACGTAAT-----GCGGCAAAA--------TATCA--------A-CCCATAACATAACAA-----------------TCCC---------------------CACATC--AA--TTTGTGT------AAAT-CATATGTAAATCTCGCCATCT-CCTG-TGCTTGT-------CTTGCAGACC-TATGGGCAGTGGG------ATTGTGGTTCAATTGGCTCGAAAGTACGGCGCAG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................................................................................................................................................................................................................................................TGGTTCAATTGGCTCGAAAGTACGG.....	25	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................TGGGCAGTGGG------ATTGTGGTTCAAT.....................	24	1	2.00	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
.....................................................................TTACGTAAT-----GCGGCAAAA--------TAT............................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
............................................................................................................................................................................................TGT------AAAT-CATATGTAAATCTCGCCA.......................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................TGGGCAGTGGG------ATTGTGGTTCAATT....................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................TAT---CACGACGC----------TGG----GGAG..............................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................GGTTCAATTGGCTCGAAAGTACGGCGCA.	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................TTGTGGTTCAATTGGCTCGAAAGTAC.......	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................ATTGTGGTTCAATTGGCTC...............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................TGGTTCAATTGGCTCGAAAGTACG......	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TTGCAGACC-TATGGGCAGTGG.........................................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................CAGACC-TATGGGCAGTGGG------AT................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................ACC-TATGGGCAGTGGG------ATTGTGGTT.........................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................GGCAGTGGG------ATTGTGGT..........................	17	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................TAT---CACGACGC----------TGG----GGAGAA............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................ATTGGCTCGAAAGTACGGCGC..	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................TTGGCTCGAAAGTACGGCGCA.	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................TGTGGTTCAATTGGCTCGAAAGTACGG.....	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................TGGG------ATTGTGGTTCAATTGGCTCGAAAG..........	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................ACC-TATGGGCAGTGGG------ATTGTG............................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................TG-TGCTTGT-------CTTGCAGACC-TATGGGCAG............................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................TG-TGCTTGT-------CTTGCAGACC-TATGGGC..............................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

dm3

TATCAACA------CAGTTAT---CACGACGC----------T-G----GGAGAAATCACTCGTTTTTATTACGTAAT-----GCGGCAAAA--------TGTCA--------A-CCCATAACATAACAA-----------------TCCC---------------------CACATC--AA--TTTGTGT------AAAT-CATATGTAAATCTCGCCATCT-CCTG-TGCTTGT-------CTTGCAGACC-TATGGGCAGTGGG------ATTGTGGTTCAATTGGCTCGAAAGTACGGCGCAG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................................................................................................................AATTGGCTCGAAAGTACGGCGC..	22	1	46.00	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	24	8	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................ATGGGCAGTGGG------ATTGTGGTTC........................	22	1	21.00	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	5	8	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................CC-TATGGGCAGTGGG------ATTGTGGT..........................	23	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12
............................................................................................................................................................................................................................................................................................ATTGGCTCGAAAGTACGGCGC..	21	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................ACC-TATGGGCAGTGGG------ATTGTGGTTC........................	26	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................TGGG------ATTGTGGTTCAATTGG..................	20	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................C-TATGGGCAGTGGG------ATTGTGGTTC........................	24	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................ATGGGCAGTGGG------ATTGTGGTT.........................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................TGGG------ATTGTGGTTCAATTGGCT................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................ACC-TATGGGCAGTGGG------ATTG..............................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................TTGGCTCGAAAGTACGGCGCA.	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GGCTCGAAAGTACGGCGCA.	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................T-------CTTGCAGACC-TATGGGCAGT...........................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................TGT-------CTTGCAGACC-TATGGGCAGTGGG------..................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................C-TATGGGCAGTGGG------ATTGTGGT..........................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................................................................................................................CATCT-CCTG-TGCTTGT-------CTTGCAGACC-.....................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................ATGGGCAGTGGG------ATTGTGGTTCAAT.....................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................ACC-TATGGGCAGTGGG------AT................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TATCAACA------GAATTAA---CACGCCAC----------TGG----GGAGAGATCACTCGTTTTTATTACGTAAT-----CCGGCAAAA--------T------------A-CTCATAACATAACAAA----------------TCCC---------------------CACATC--AA--TTTGTGT------AAAT-CATATGTAAATCTCGCCATCT-CGTG-TGCTTGT-------CTTGCAGACC-TATGGGCAGTGGG------ATTGTGGTTCAATTGGCTCGAAAGTACGGCGCAG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
............................................................................................................................................................................................................................................................................................ATTGGCTCGAAAGTACGGCGC..	21	1	10.00	10	3	0	0	0	7	0	0
.............................................................................................................................................................................................................................................................................................TTGGCTCGAAAGTACGGCGC..	20	1	6.00	6	2	1	0	0	3	0	0
............................................................................................................................................................................................................................................................................................ATTGGCTCGAAAGTACGGCGCA.	22	1	3.00	3	1	0	0	0	2	0	0
.........................................................................................................................................................................................................................................................................................TCAATTGGCTCGAAAGTACGGCGCAG	26	1	2.00	2	0	0	0	0	0	2	0
................................................................................................................................................................................................................................................................TGGGCAGTGGG------ATTGTGGTT.........................	20	1	2.00	2	1	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................ATTGTGGTTCAATTGGCTCG..............	20	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................ACC-TATGGGCAGTGGG------ATTGTGG...........................	23	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................CAATTGGCTCGAAAGTACGGCGC..	23	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................GGGCAGTGGG------ATTGTGGT..........................	18	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................C-TATGGGCAGTGGG------ATTGTGGTTCA.......................	25	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................ATGGGCAGTGGG------ATTGTGGTTC........................	22	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................ATTGGCTCGAAAGTACGG.....	18	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................ACC-TATGGGCAGTGGG------ATTGTG............................	22	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................GTTCAATTGGCTCGAAAGTACGGC....	24	1	1.00	1	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................GTGGTTCAATTGGCTCGAAAGT.........	22	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................ACC-TATGGGCAGTGGG------ATTGTGGTT.........................	25	1	1.00	1	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................AATTGGCTCGAAAGTACGGC....	20	1	1.00	1	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GGCTCGAAAGTACGGCGCA.	19	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................C-TATGGGCAGTGGG------ATTGTGG...........................	21	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................TATGGGCAGTGGG------ATTGTGGTTC........................	23	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................TCT-CGTG-TGCTTGT-------CTTGCAG.........................................................	21	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................CAATTGGCTCGAAAGTACGG.....	20	1	1.00	1	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................ACC-TATGGGCAGTGGG------ATTGTGGT..........................	24	1	1.00	1	0	0	0	1	0	0	0

droYak3

TTTCAACA------GAATTAA---CACGCCGC----------TGG----GGAGAGATCACTCGTTTTTATTACGTAAT-----CCGGCAAAA--------T------------A-CCCATAACATAACAAA----------------TCCC---------------------CACATC--AA--TTTGTGTGT----AAAT-CATATGTAAATCTAGCCATCT-CGTG-TGCTTGT-------CTTGCAGACC-TATGGGCAGTGGG------ATTGTGGTTCAATTGGCACGAAAGTACGGCGCAG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................................................................................................................................................................................................................................................................................TTGGCACGAAAGTACGGCGC..	20	1	3.00	3	0	0	2	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................ATTGGCACGAAAGTACGGCGC..	21	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................C-TATGGGCAGTGGG------ATTGTGGT..........................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................CC-TATGGGCAGTGGG------ATTGTG............................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................GGTTCAATTGGCACGAAA...........	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................CC-TATGGGCAGTGGG------ATTGTGGTTC........................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TTCAATTGGCACGAAAGTACGGCGCAG	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TTCAATTGGCACGAAAGTACGGCGCA.	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................ATTGGCACGAAAGTACGGC....	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AATTGGCACGAAAGTACGGC....	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TCAATTGGCACGAAAGTACGGCGC..	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................ATTGGCACGAAAGTACGGCGCC.	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CTAGCCATCT-CGTG-TGCTTGT-------CTTGC...........................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................GGG------ATTGTGGTTCAATTG...................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................ATTGTGGTTCAATTGGCAC...............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................TTGTGGTTCAATTGGCACGAAA...........	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................GCCGC----------TGG----GGAGAGATCACTCGTT..................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................ACC-TATGGGCAGTGGG------ATTGTGGTTC........................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................ATGGGCAGTGGG------ATTGTGGT..........................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................CC-TATGGGCAGTGGG------ATTGTGGTT.........................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................TATGGGCAGTGGG------ATTGTGGTTCA.......................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................GGG------ATTGTGGTTCAATTGGCACGAAA...........	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................CTTGT-------CTTGCAGACC-TATGGGCAGT...........................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................TTCAATTGGCACGAAAGTACGGCGC..	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................CAATTGGCACGAAAGTACGG.....	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................ATTGGCACGAAAGTACGGCGCA.	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

AACTAATA------GAAATAA---CTCGTCGC----------TTG----GGAGATATCAGTCATTTTCATTACGTAAT-----CCGGCAAAA--------G-TCT--------CCTCCATAACATAACAAA----------------TCGC------------------ACACACATCAC-A--TTTGTGTCTCATA-AATCC--------------GCATCT-CGTG-TGCTTGT-------CTTGCAGACC-TATGGGCAGTGGG------ATTTTGGTGCAATTGGCTCGAAAGTACGGCGCAG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AACGCACT------GATCCAA---CACGCCGC----------TTG----GGAGTTATCAGTCATTTTCATTACGTAAT-----CCGGCAAAA-G------TC--T--------C-ACCATAACATAGTAGA----------------ACCCCAGCG----------------CACATTACCA--TCTGTGTCTCACA-AATCC--------------CCATCT-CGTG-TGCTTGT-------CTTGCAGACC-TATGGGCAGTGGG------ATTGTGGTGCAATTGGCTCGAAAGTACGGCGCAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AACCGACT------AAATAAA---CACGTCGC----------TCG----GGAGATTTCAGTCATTTTCATTACGTAAC---------------------------------------------ATAACAAA----------------ACCCCATTT----------------AACATTAC-A--T-TCAGTCTCATA-AATC---------------CCATCT-CGTG-TGCTTGT-------CTTGCAGACC-CATGGGCAGTGGG------ATTGTGGTGCAATTGGCTCGAAAGTACGGCGCAG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AACCAGCC------AACTTAA---CACGCCAC----------TGG----GGAGATATCAGTCATTTTCATTACGTAAT-----CCGGCAAAA--------TCTCACACAATTTA-CCCA-----------A----------------TAAC----------------------ATAACAC-A--TTTGTGTCTCATA-AATCCAT--------------ATATCCGTG-TGCTTGT-------CTTGCAGACC-TATGGGCAGTGGG------ATTGTGGTGCAATTGGCTCGAAAGTACGGCGCAG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAGCAACC------AAATTAA---CACACCGC----------TTG----GGAAATATCAGTCATTTTCATTACGTAAT-----TCGACAAA---------TCTAACACAATTTA-CCCAGAACATAACA--------------------------------------------------C-A--TTTGTGTCTCATA-AATCCAT--------------ATAT-CGTG-TGCTTGT--------TTGCAGACC-TATGGGCAGTGGG------ATTGTGGTGCAATTGGCTCGAAAGTACGGCGCAG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTTAAATT-------AATCAA---CGAACCGC----------CTG----GGAGATATCACTCATTTTCATTACGTAAT-----CCGGCAAAA-GT-----TGTGT--------C-CCCATAACATAACAAA----------------TCCC----------------------ATAACAC-A--TTTGTGTCTAACA-AAAA---------------CCATCT-CGTGCTGTTTGT-------CTTGCAGAACTTATGGGCAGTGGG------ATTGTGGTGCAATTGGCTCGAAAGTACGGCGCAG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG-TGTTTGT-------GTTGCAGACC-TATGGGCAGTGGG------ATTGTGGTGCAATTGGCTCGAAAGTACGGCGCAG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CACCATTA------CCATCATCAGACACCCGC-----------------------ATCAAGCATTTTCATTACGTAACTGCATGCTGCATA----------------------------GA-------ATATCCCACTTGCCGTTTAAACC---------------------CACATC--GA--T-TGTGT------TGT---------------------------TCTGTTTCTGTAATCCATTCCAGACC-TATGGGCAGTAGC------ATTGTGGTGCAATTGGCTCGAAAGTACGGCGCAG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................................................................................................................................................................ATGGGCAGTAGC------ATTGTGGTGCA.......................	23	1	3.00	3	1	0	0	0	0	2
..............................................................................................................................................................................................................................................................TATGGGCAGTAGC------ATTGTGGTGCA.......................	24	1	2.00	2	0	0	0	0	0	2
........................................................................................................................................................................................................................................................................AGC------ATTGTGGTGCAATTGGCTCGAAA...........	26	1	2.00	2	1	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................AATTGGCTCGAAAGTACGGCGCA.	23	1	2.00	2	1	1	0	0	0	0
........................................................................................................................................................................................................................................................................AGC------ATTGTGGTGCAATTGGCC................	21	1	2.00	2	0	2	0	0	0	0
...............................................................................................................................................................................................................................................................ATGGGCAGTAGC------ATTGTGGT..........................	20	1	2.00	2	0	0	0	0	0	2
.........................................................................................................................................................................................................................................................................................GCAATTGGCTCGAAAGTACGGC....	22	1	2.00	2	0	0	1	0	1	0
......................................................................................................................................................................................................................................................................GTAGC------ATTGTGGTGCAATTGGCT................	23	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................ATTGGCTCGAAAGTACGGCGC..	21	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................ATTGGCTCGAAAGTACGG.....	18	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................AATTGGCTCGAAAGTACGGCGC..	22	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................ATTGGCTCGAAAGTACGGC....	19	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................ACC-TATGGGCAGTAGC------ATTGTGGTGCAA......................	28	1	1.00	1	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................TTGGCTCGAAAGTACGGCGCA.	21	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................TATGGGCAGTAGC------ATTGTGGT..........................	21	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................GGGCAGTAGC------ATTGTGGT..........................	18	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................GTAGC------ATTGTGGTGCAATTGGC.................	22	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................GTGCAATTGGCTCGAAAGTACGGCGC..	26	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................TTGTGGTGCAATTGGCTCG..............	19	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................ATTGGCTCGAAAGTACGGCGCAG	23	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................AGC------ATTGTGGTGCAATTGGCTC...............	22	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................AATTGGCTCGAAAGTACGGC....	20	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................AGC------ATTGTGGTGCAATTGGCTCGAA............	25	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................GCAATTGGCTCGAAAGTACGGCGCA.	25	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................ATGGGCAGTAGC------ATTGTGG...........................	19	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................TATGGGCAGTAGC------ATTGTGGTGCAAT.....................	26	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................GC------ATTGTGGTGCAATTGGCT................	20	1	1.00	1	0	1	0	0	0	0

droBip1

G-CAGACACCATTAACTTCACCAGACACCCGC-----------------------ATCAAGCATTTTCATTACGTAACTGCATGCAGCATAG--------A---------------------------ATCTCCCACTTGCCGTCTATACC---------------------CACATC--GA--T-TGTGT------TGT---------------------------TCTGTTTCTGTTATCCATTCCAGACC-TATGGGCAGTAGC------ATTGTGGTGCAATTGGCTCGAAAGTACGGCGCAG	Size	Hit Count	Total Norm	Total
No Reads

dp5

TGCCAACA------CCG--------CACTCCCATCTAACAAATGAAAAAGAGTCTGCCTGTCATTTCCATTACGTAAT-----CCAA----ACATCAGTG--------------CT----------------------------------CCACCACACTCTGACTTCCCTACGCACCAT-ATCCTCATGTCTCATA----------------------------TTG-TGTTTGT-------TTTACAGACT-TATGGGCAGTAGT------GTTGTCTCGCAATTGGCTCGAAAGTACGCTGCAG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................................................................................................................................................................................................................T------GTTGTCTCGCAATTGGCTCGAAAG..........	25	1	4.00	4	0	3	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................GTAGT------GTTGTCTCGCAATTGGCTC...............	24	1	3.00	3	0	2	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................GTCTCGCAATTGGCTCGAAAGT.........	22	1	3.00	3	0	3	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................AGT------GTTGTCTCGCAATTGGCT................	21	1	2.00	2	0	1	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................ATTGGCTCGAAAGTACGCTGCA.	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................GTAGT------GTTGTCTCGCAATTGGCC................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................TGTCTCGCAATTGGCTCGA.............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................TCTCGCAATTGGCTCGAAAGTACG......	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................TATGGGCAGTAGT------GTTGTCT...........................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................TGTCTCGCAATTGGCTCGAA............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AATTGGCTCGAAAGTACGCTGC..	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................T------GTTGTCTCGCAATTGGCTCGAAA...........	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................TAGT------GTTGTCTCGCAATTGGCTCG..............	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................CAATTGGCTCGAAAGTACGCTGCA.	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AATTGGCTCGAAAGTACGCTG...	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
TGCCAACA------CCG--------CACTCCCATCT...............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................GTTGTCTCGCAATTGGCTCGA.............	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................TAGT------GTTGTCTCGCAATTGGCTCGA.............	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................TGTCTCGCAATTGGCTCGAAAGTACGC.....	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................GTTGTCTCGCAATTGGCTCGAAAG..........	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................TCGCAATTGGCTCGAAAGTACGCTGC..	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................GTTGTCTCGCAATTGGCTCGAA............	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................TCGCAATTGGCTCGAAAGTACGCTGCAG	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................GTAGT------GTTGTCTCGCAATTGGCT................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................GT------GTTGTCTCGCAATTGGCTCGAA............	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................AGTAGT------GTTGTCTCGCAATTGGC.................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................AGT------GTTGTCTCGCAATTGGCTCGAA............	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TGGCTCGAAAGTACGCTGC..	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................GTAGT------GTTGTCTCGCAATTGGCTCG..............	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................ATGGGCAGTAGT------GTTGTCTC..........................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................T-TATGGGCAGTAGT------GTTGTCTC..........................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................TTGTCTCGCAATTGGCTCGAAAGTACGC.....	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................T-TATGGGCAGTAGT------GTTGTCTCG.........................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................TATGGGCAGTAGT------GTTGTCTCGCA.......................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

TGCCAACA------CCG--------CACTCCCATCTAACAAATGAAAAAGTGTCTGCCTGTCATTTCCATTACGTAAT-----CCAA----ACATCAGTG--------------CT----------------------------------CCACCACGCTCTGACTTCCCTACGTACCAT-ATCCTCATGTCTCATA----------------------------TTG-TGTTTGT-------TTTACAGACT-TATGGGCAGTAGT------GTTGTCTCGCAATTGGCTCGAAAGTACGCTGCAG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........................................................................................................................................................................................................................................................................AGT------GTTGTCTCGCAATTGGCTC...............	22	1	4.00	4	4	0	0	0	0	0
...............................................................................................................................................................................................................................................................ATGGGCAGTAGT------GTTGTCTC..........................	20	1	2.00	2	0	2	0	0	0	0
................................................................................................................................................................................................................................................................TGGGCAGTAGT------GTTGTCTC..........................	19	1	2.00	2	0	2	0	0	0	0
......................................................................................................................................................................................................................................................................GTAGT------GTTGTCTCGCAATTGGCTC...............	24	1	2.00	2	1	0	1	0	0	0
..........................................TGAAAAAGTGTCTGCCTGTC.....................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................................................................................................................................................................GTCTCGCAATTGGCTCGAAA...........	20	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................TTGGCTCGAAAGTACGCTGCAG	22	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................CGCAATTGGCTCGAAAGTACG......	21	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................GTAGT------GTTGTCTCGCAATT....................	19	1	1.00	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................GT------GTTGTCTCGCAATTGGCTC...............	21	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................TGTCTCGCAATTGGCTCGAAAGTACGC.....	27	1	1.00	1	0	1	0	0	0	0

droWil2

T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACAGACCTTATGGGCAGTGGCAGCAATATTGTCACCCAATTGGCAAGAAAGTACGGTGCAG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
............................................................................................................................................................................................................................................................................................ATTGGCAAGAAAGTACGGTGCA.	22	1	8.00	8	0	0	1	7	0
................................................................................................................................................................................................................................................................................................GCAAGAAAGTACGGTGCA.	18	1	5.00	5	0	0	0	5	0
............................................................................................................................................................................................................................................................CTTATGGGCAGTGGCAGCAA...................................	20	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................AGCAATATTGTCACCCAATTGGCA................	24	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................TATGGGCAGTGGCAGCAATATTGTCACC.........................	28	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................AGCAATATTGTCACCCAAT.....................	19	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................TTATGGGCAGTGGCAGCAATATTGTC............................	26	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................GCAGCAATATTGTCACCCAATT....................	22	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................AGCAATATTGTCACCCAATTGGCAAGA.............	27	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................ACCCAATTGGCAAGAAAGTACGGTGCA.	27	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................TTATGGGCAGTGGCAGCAATA.................................	21	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................GCAATATTGTCACCCAATTG...................	20	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................GCAATATTGTCACCCAATTGGCAAGAAA...........	28	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................................CTTATGGGCAGTGGCAGC.....................................	18	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................TATGGGCAGTGGCAGCAATAT................................	21	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................................................CTTATGGGCAGTGGCAGCAATATTGT.............................	26	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................TATGGGCAGTGGCAGCAATATTGT.............................	24	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................AGCAATATTGTCACCCAATTGGCAAGAA............	28	1	1.00	1	0	1	0	0	0

droVir3

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATACA-TATGGGCAGTAGC------GTCATCTTACAGCTGGCGCGAAAGTACGGTGCAG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................................................................................................................................................................................................TACA-TATGGGCAGTAGC------GTCATC............................	23	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AGCTGGCGCGAAAGTACGGTGCAG	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................CATCTTACAGCTGGCGCGAAA...........	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GGCGCGAAAGTACGGTGCA.	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................CTTACAGCTGGCGCGAAAGTACGGTGCA.	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................TCATCTTACAGCTGGCGCGAA............	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................ATACA-TATGGGCAGTAGC------GTCA..............................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TACA-TATGGGCAGTAGC------GTCA..............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................ATACA-TATGGGCAGTAGC------..................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................ATACA-TATGGGCAGTAGC------GTCATC............................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................A-TATGGGCAGTAGC------GTCATC............................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................GTCATCTTACAGCTGGCGCGA.............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................ACA-TATGGGCAGTAGC------GTCATC............................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TACA-TATGGGCAGTAGC------GTCATCTTAC........................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................TATGGGCAGTAGC------GTCATC............................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................TGGGCAGTAGC------GTCATCTTACAGCT....................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATACA-TATGGGCAGTAGC------ATCATCTCGCATCTGGCGCGAAAGTACGGTGCAG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................................................................................................................................................................................CA-TATGGGCAGTAGC------ATCATCTCG.........................	24	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................GTAGC------ATCATCTCGCATCTGGCGC...............	24	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................TACA-TATGGGCAGTAGC------ATCATCT...........................	24	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................ATCATCTCGCATCTGGCGC...............	19	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................ATCATCTCGCATCTGGCGCG..............	20	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................AGTAGC------ATCATCTCGCATCTG...................	21	1	1.00	1	0	0	0	0	0	1

droGri2

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGGGCAGTAGC------ATAATAACGCAGTTGGCGCGAAAGTACGGTGCAG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..................................................................................................................................................................................................................................................................................TAATAACGCAGTTGGCGCGAAAGTAC.......	26	1	1.00	1	0	1
............................................................................................................................................................................................................................................................................................GTTGGCGCGAAAGTACGGTGCA.	22	1	1.00	1	0	1
....................................................................................................................................................................................................................................................................................ATAACGCAGTTGGCGCGAAA...........	20	1	1.00	1	0	1

dsi_3866

x:7353268-7353364 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-9.0	-8.6	-8.5