ID:dsi_3865 |
Coordinate:3r:10661192-10661341 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -20.6 | -20.6 | -20.5 |
 |
 |
 |
CDS [3r_10660926_10661191_+]; exon [3r_10660236_10661191_+]; intron [3r_10661192_10681329_+]
No Repeatable elements found
| ##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TACATAGATCATATCAACAAGAAGACCACCTGGCTGGATCCCAGAGATTGGTAAGTGTTCTGAAAGGGTCAATTAAAGAAATGGAATCTGAAATATAGTTATAAGATAGTTACATTTGGAAAGTTAGTTTAAACTACTAAAACAGTTATCAGAAATATGAGCCATACATAACGACTCTTTCAGTGATCAAACCAACATATTGTGTTTTTTAATAAGTTATAGATGCTTTGAAACCTTAAATAACATAATA **************************************************.........(((((((((((..........((((..((((((((...(((...((.(((((....((((....))))....)))))))..))).))).)))))........)))).......))))))))))).................************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553486 Makindu_3 day-old ovaries |
SRR553488 RT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|
| ..........................................................................................................TAGTTACATTTGGAAAGTTAGTTTAAAA.................................................................................................................... | 28 | 1 | 1 | 2.00 | 2 | 1 | 1 | 0 |
| .................................................................................................................................................................................TTCCAGTGATCAAACCAACATATTGTGT............................................. | 28 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .................................................................................TGGAATCTGAAATATAGTTATAAGAT............................................................................................................................................... | 26 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...............................................TTGGTAAGTGTTCTGAAAAGGTTTA.................................................................................................................................................................................. | 25 | 3 | 1 | 1.00 | 1 | 0 | 1 | 0 |
| .......................................................................................................AGATAGTTACATTTGGAAAGTTAGTT......................................................................................................................... | 26 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 |
| ..............................................................................................................TACATTTGGAAAGTTAGTTTAAAAT................................................................................................................... | 25 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 |
| ..................................................................................................TTATAAGATAGTTACATTTGGAAAGT.............................................................................................................................. | 26 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .....................................ATCCCAGAGATTGGTAAGTGTTCTGAA.......................................................................................................................................................................................... | 27 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 |
| ..............................................................................................................TACATTTGGAAAGTTAGTTTAAAA.................................................................................................................... | 24 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 |
| ............................................................TGAAAAGGTTTATTAAAGAAATGGAA.................................................................................................................................................................... | 26 | 3 | 1 | 1.00 | 1 | 0 | 1 | 0 |
| ........................................................................................TGAAATATAGTTATAAGATAGTTACA........................................................................................................................................ | 26 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .......................................CCCAGAGATTGGTAAGTGTTCTGAAAA........................................................................................................................................................................................ | 27 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 |
| ...............................................................................................TAGTTATAAGATAGTTACATTTGGAAAGT.............................................................................................................................. | 29 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..............................TGGCTGGATCCCAGAGATTGGTAAGTA................................................................................................................................................................................................. | 27 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .........................................................................TAAAGAAATGGAATCTGAAATATAGT....................................................................................................................................................... | 26 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...............................................................................................................................TTTAAAATACTAGAACAGTTATCAGA................................................................................................. | 26 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .............................................................................................TATAGTTATAAGATAGTTACATTTGGAA................................................................................................................................. | 28 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...................................................................................................TATAAGATAGTTACATTTGGAAAGTT............................................................................................................................. | 26 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 |
| ...................................................................................................TATAAGATAGTTACATTTGGAAAGTA............................................................................................................................. | 26 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ................................................................................................................................................................................................CAACATATTGTGTTTTT......................................... | 17 | 0 | 2 | 0.50 | 1 | 0 | 0 | 1 |
| .................................................GGTTAGTGTTCTGATA......................................................................................................................................................................................... | 16 | 2 | 20 | 0.05 | 1 | 0 | 1 | 0 |
|
ATGTATCTAGTATAGTTGTTCTTCTGGTGGACCGACCTAGGGTCTCTAACCATTCACAAGACTTTCCCAGTTAATTTCTTTACCTTAGACTTTATATCAATATTCTATCAATGTAAACCTTTCAATCAAATTTGATGATTTTGTCAATAGTCTTTATACTCGGTATGTATTGCTGAGAAAGTCACTAGTTTGGTTGTATAACACAAAAAATTATTCAATATCTACGAAACTTTGGAATTTATTGTATTAT
**************************************************.........(((((((((((..........((((..((((((((...(((...((.(((((....((((....))))....)))))))..))).))).)))))........)))).......))))))))))).................************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M023 head |
SRR553488 RT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
SRR553486 Makindu_3 day-old ovaries |
SRR553487 NRT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................................................ATGTTGTCAATATTCTTTAT............................................................................................. | 20 | 2 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 |
| ...TATCTAGCATTGTTGTTC..................................................................................................................................................................................................................................... | 18 | 2 | 5 | 0.20 | 1 | 0 | 1 | 0 | 0 | 0 |
| .................................GAACTAGGGTCTCTA.......................................................................................................................................................................................................... | 15 | 1 | 6 | 0.17 | 1 | 0 | 0 | 1 | 0 | 0 |
| ..............................................................................................................................AAAATTTGATGATGTTGT.......................................................................................................... | 18 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 |
| .................................................................................................................................................................................................................................GAAACCTTGGAATTTGT........ | 17 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 |
Generated: 04/24/2015 at 10:46 AM