ID:

dsi_3838

 Coordinate:

2r:5861210-5861264 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [2r_5860687_5861209_-]; CDS [2r_5860687_5861209_-]; CDS [2r_5861265_5862438_-]; exon [2r_5861265_5862438_-]; intron [2r_5861210_5861264_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------##################################################
ATTGCCCAGCTCTCAGAGCTAGTTTCCAGCTTTGAGTTCGATGCACACAAGTAAGTGATCAGAACATAAAAACCGGTTTTATATAACGTTAATTTTATCCTTAAGGGACGAGCTGCAGATCGGCGGTATATTCATACGCATCTACAATGATATGC
**************************************************.((((.(((...(((((((((.....)))))).....)))......)))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M024
male body		 M025
embryo
 M053
female body
 O002
Head
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
.............................................................................................................GAGCTGCAGATCGGCGGTATATTAT..................... 25 2 1 3.00 3 3 0 0 0 0 0 0
........................................................................................................AGGACGAGCTGCAGATCGGCGGTATA......................... 26 1 1 1.00 1 0 0 0 1 0 0 0
...................................GTTCGATGCACACAAGGACG.................................................................................................... 20 2 1 1.00 1 0 0 1 0 0 0 0
...........................AGCTTTGAGTTCGATGCAC............................................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0
..........................................................................................................GACGAGCTGCAGATCGGC............................... 18 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................ACGAGCTGCAGATCGGCGGGT........................... 21 2 2 0.50 1 0 1 0 0 0 0 0
..............AGAGCTAGTTTCAAGCT............................................................................................................................ 17 1 5 0.20 1 0 0 0 0 0 1 0
..........................................................TCAGAACATAAAAACT................................................................................. 16 1 13 0.08 1 0 0 0 0 0 0 1

Anti-sense strand reads

TAACGGGTCGAGAGTCTCGATCAAAGGTCGAAACTCAAGCTACGTGTGTTCATTCACTAGTCTTGTATTTTTGGCCAAAATATATTGCAATTAAAATAGGAATTCCCTGCTCGACGTCTAGCCGCCATATAAGTATGCGTAGATGTTACTATACG
**************************************************.((((.(((...(((((((((.....)))))).....)))......)))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
..ACGGGTCGGGAGTCTC......................................................................................................................................... 16 1 3 6.33 19 0 14 4 0 0 0 1 0 0 0
..ACGGGTCGGGAGTCTCGGTTA.................................................................................................................................... 21 3 3 6.00 18 11 1 1 5 0 0 0 0 0 0
.CACGGGTCGGGAGTCTCGGT...................................................................................................................................... 20 3 11 1.73 19 13 0 0 3 0 0 0 3 0 0
..ACGGGTCGGGAGTCTCGGTT..................................................................................................................................... 20 3 15 1.53 23 18 1 2 1 0 0 1 0 0 0
.................CGATCACAGGGCGAATCTCAA..................................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0
................TCGATCAAAGGTCGAAACTCAAGCTACGT.............................................................................................................. 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.AACGGGTCGGGAGTCTCGGTTA.................................................................................................................................... 22 3 2 1.00 2 2 0 0 0 0 0 0 0 0 0
GCACGGGTCGGGAGTCTCGAT...................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...CGGGTCGGGAGTCTC......................................................................................................................................... 15 1 7 0.86 6 0 5 1 0 0 0 0 0 0 0
GCACGGGTCGGGAGTCTC......................................................................................................................................... 18 3 20 0.85 17 7 4 1 0 2 0 1 0 0 2
...CGGGTCGGGAGTCTCGGT...................................................................................................................................... 18 2 6 0.67 4 1 0 1 1 0 0 0 1 0 0
..ACGGGTCGGGAGTCT.......................................................................................................................................... 15 1 7 0.57 4 0 2 0 0 0 0 0 0 2 0
.CACGGGTCGGGAGTCTCGATTA.................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..ACGGGTCGGGAGTCTCGGT...................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................ACGTATGCGTAGATGATATTAT... 22 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0
..........................................................................................................CTGGTCGATGTCTAGCAGCC............................. 20 3 9 0.44 4 0 0 0 0 4 0 0 0 0 0
.CACGGGTCGGGAGTCTC......................................................................................................................................... 17 2 8 0.38 3 0 2 1 0 0 0 0 0 0 0
..................................TCACGCTAGGTGTGTT......................................................................................................... 16 2 20 0.35 7 0 0 0 0 7 0 0 0 0 0
.CACGGGTCGGGAGTCTCG........................................................................................................................................ 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................TTAAAATAGGAATTC.................................................. 15 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................GCTCGATGTCTAGCAGCC............................. 18 2 6 0.17 1 0 0 0 0 1 0 0 0 0 0
....GGGTCGGGAGTCTCG........................................................................................................................................ 15 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0
GCACGGGTCGGGAGTCTCG........................................................................................................................................ 19 3 20 0.10 2 0 0 0 2 0 0 0 0 0 0
.CACGGGTCGGGAGTCT.......................................................................................................................................... 16 2 20 0.10 2 0 0 0 0 2 0 0 0 0 0
...CGGGTCGTGAGTCTC......................................................................................................................................... 15 1 12 0.08 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................CTTGTCGATGTCTAGCCGCC............................. 20 3 15 0.07 1 0 0 0 0 1 0 0 0 0 0
....GGGTCGGGAGTCTCGGT...................................................................................................................................... 17 2 19 0.05 1 0 1 0 0 0 0 0 0 0 0
............................................................................................AAAAAAGGAACTCCCTGAT............................................ 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0
...........................................................................................................TGTTCGATGTCTAGCAGCC............................. 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0

Generated: 04/24/2015 at 01:30 AM