ID:

dsi_3811

 Coordinate:

x:8996802-8996951 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.8 -16.5 -16.5

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
SAR_DMSatelliteSatellite+
mature
  1. dsi_3811  x:8996820-8996846 -
  2. x:9062947-9062973 +
  3. x:9715369-9715395 +
  4. node_45114:205-231 +
star

Sense Strand Reads

ACATGGTGGCGCAGAAGGCCTTCAGGGGGCAACGCATGACGCTCGACAAGGTATAACATTCCAAATTCAGGCTTTTATTTTTATAGTTAAGGCAAAAAAACTGATTACTTTATGACCGAAATTCGGAAAATCGTCTTTTGCCAAAAATTTGATATTTACAATCGGAATTTTCATCATAACTTCGCTAAAAATAGTCATATAGATGTAAGAATAACTGTTTTGAGCAGCTAATTACCAATGCTAACGATCC
**************************************************................((((..((((..(((((....)))))..))))..)))).....((((((..(((((((.((((((.(((...............)))))))....)).)))))))..))))))....((((....)))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 O002
Head
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTGA........................... 24 0 2 84.50 169 98 47 13 7 2 2 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTGAGA......................... 26 1 2 39.50 79 37 19 10 9 4 0 0
.........................................................................................................................................................................................TAAAAATGGTCATATAGATGTAAGAA....................................... 26 1 3 35.33 106 55 26 2 15 8 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTGAGC......................... 26 0 2 18.00 36 20 11 1 2 2 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTGAGAAAC...................... 29 2 2 17.00 34 29 1 0 3 1 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTGAG.......................... 25 0 2 16.50 33 23 8 0 1 1 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTT.............................. 21 0 2 14.50 29 13 12 1 1 0 2 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTGAGAA........................ 27 1 2 12.50 25 14 6 1 2 2 0 0
......................................................................................................................................................................................................ATAGATGTAAGAATAACTGTTTTGA........................... 25 0 2 11.50 23 12 11 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTGAGCA........................ 27 0 2 10.00 20 16 2 1 0 1 0 0
.........................................................................................................................................................................................TAAAAATGGTCACATAGATGTAAGAA....................................... 26 2 3 6.67 20 15 0 0 2 3 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTT............................... 20 0 2 5.00 10 3 1 2 0 0 4 0
........................................................................................................................................................................................................AGATGTAAGAATAACTGTTTTGAGA......................... 25 1 2 5.00 10 6 4 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTG............................ 23 0 2 4.50 9 7 0 2 0 0 0 0
.........................................................................................................................................................................................TAAAAATGGTCACATAGATGTACGAA....................................... 26 3 3 4.00 12 8 4 0 0 0 0 0
......................................................................................................................................................................................................ATAGATGTAAGAATAACTGTTTTGAG.......................... 26 0 2 4.00 8 3 5 0 0 0 0 0
.........................................................................................................................................................................................TAAAAATGGTCATATAGATGTAAGA........................................ 25 1 3 3.33 10 3 4 0 2 1 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTG................................. 18 0 2 3.00 6 2 0 0 0 0 4 0
.....................................................................................................................................................................................................TATAGATGTAAGAATAACTGTTTTGA........................... 26 0 2 3.00 6 4 2 0 0 0 0 0
.......................................................................................................................................................................................GCTAAAAATGGTCATATAGATGTAAGAA....................................... 28 1 3 2.67 8 5 2 0 1 0 0 0
.........................................................................................................................................................................................TAAAAATGGTCACATAGATGTAAGA........................................ 25 2 3 2.67 8 4 3 0 0 1 0 0
.........................................................................................................................................................................................TAAAAATGGTCACATAGATGTAAGAATA..................................... 28 2 2 2.50 5 2 2 0 1 0 0 0
...........................................................................................................................................................................................................TGTAAGAATAACTGTTTTGAGAA........................ 23 1 2 2.50 5 1 2 0 2 0 0 0
......................................................................................................................................................................................................ATAGATGTAAGAATAACTGTTT.............................. 22 0 2 2.50 5 2 2 1 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTT............................. 22 0 2 2.50 5 2 0 1 2 0 0 0
.........................................................................................................................................................................................TAAAAATGGTCATATAGATGTAAGAATA..................................... 28 1 2 2.50 5 2 2 0 0 1 0 0
..............................................................................................................................................................................................................AAGAATAACTGTTTTGAGCA........................ 20 0 20 2.15 43 0 0 0 0 0 0 43
..............................................................................................................................................................................................................AAGAATAACTGTTTTGAG.......................... 18 0 20 2.15 43 0 0 0 0 0 43 0
.............................................................................................................................................................................................................TAAGAATAACTGTTTTGAGCA........................ 21 0 2 2.00 4 0 0 0 0 0 0 4
........................................................................................................................................................................................................AGATGTAAGAATAACTGTTTTGAGCA........................ 26 0 2 2.00 4 2 2 0 0 0 0 0
...............................................................................................................................................................................................TAATCATATAGATGTAAGAATAACTGTT............................... 28 1 1 2.00 2 2 0 0 0 0 0 0
......................................................................................................................................................................................................ATAGATGTAAGAATAACTGTTTTGAGC......................... 27 0 2 2.00 4 1 3 0 0 0 0 0
.......................................................................................................................................................................................................TAGAAGTAAGAATAACTGTTTTGAGC......................... 26 1 3 1.67 5 2 2 0 0 1 0 0
..........................................................................................................................................................................................TAAAATGGTCATATAGATGTAAGAA....................................... 25 2 7 1.57 11 4 3 1 1 2 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACT.................................. 17 0 2 1.50 3 0 1 2 0 0 0 0
.........................................................................................................................................................................................................GATGTAAGAATAACTGTTTTGAGA......................... 24 1 2 1.50 3 1 0 1 0 1 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACGGTTTTGA........................... 24 1 2 1.50 3 1 0 1 1 0 0 0
.....................................................................................................................................................................................................TATAGATGTAAGAATAACTGTTTTGAGA......................... 28 1 2 1.50 3 2 0 0 1 0 0 0
..................................................................................................................................................................................................TCACATAGATGTAAGAATAACTGT................................ 24 1 2 1.50 3 0 3 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTACGAATAACTGTTTTGA........................... 24 1 2 1.50 3 1 1 0 1 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTGAT.......................... 25 1 2 1.50 3 2 1 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTGAGCAG....................... 28 0 2 1.50 3 0 2 1 0 0 0 0
......................................................................................................................................................................................................ATAGATGTAAGAATAACTGTTTTG............................ 24 0 2 1.50 3 1 1 1 0 0 0 0
........................................................................................................................................................................................................AGATGTAAGAATAACTGTTT.............................. 20 0 2 1.50 3 1 1 1 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGT................................ 19 0 2 1.50 3 0 1 2 0 0 0 0
........................................................................................................................................................................................................AGATGTAAGAATAACTGTTTTGAG.......................... 24 0 2 1.50 3 1 0 0 0 0 2 0
............................................................................................................TTTATGACAGAAATTCGGAAAATTA..................................................................................................................... 25 3 3 1.33 4 1 0 0 3 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACGGTTTTGAACAGC...................... 29 2 4 1.25 5 3 1 0 1 0 0 0
.........................................................................................................................................................................................TAAAAATGGCCATATAGATGTAAGAA....................................... 26 2 4 1.25 5 1 2 0 0 2 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTGAA.......................... 25 1 4 1.25 5 3 2 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACGGTTTTGAA.......................... 25 2 4 1.25 5 4 1 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGCAAGAATAACTGTTTTGAGA......................... 26 2 8 1.13 9 8 1 0 0 0 0 0
............................................................................................................................................................................................................................TGAGCAGCTAATTACCAATGC......... 21 0 14 1.07 15 0 0 0 0 0 0 15
......................................................................................................................................................................................................ATAGATGTAAGAATAACTGTTTTGAGA......................... 27 1 2 1.00 2 0 1 0 1 0 0 0
..........................................................................................................................................................................................AAAAATGGTCATATAGATGTAAGAATA..................................... 27 1 2 1.00 2 2 0 0 0 0 0 0
..................................................................................................................................................................................................TCATATAGATGTAAGAATAACTGT................................ 24 0 2 1.00 2 2 0 0 0 0 0 0
...............................................................................................................................................................................................TAATCATATAGATGTAAGAATAACTGT................................ 27 1 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTGAGCAAC...................... 29 1 2 1.00 2 2 0 0 0 0 0 0
..........................................................................................................................................................................................................ATGTAAGAATAACTGTTTTGAGAA........................ 24 1 2 1.00 2 1 0 0 0 1 0 0
............................................................................................................................................................................................................GTAAGAATAACTGTTTTGAGAAA....................... 23 2 2 1.00 2 2 0 0 0 0 0 0
..........................................................................................................................................................................................................ATGTAAGAATAACTGTTTTGAGC......................... 23 0 2 1.00 2 2 0 0 0 0 0 0
.........................................................................................................................................................................................TAAAAATGGTCATATAGATGTAAGAATAACTG................................. 32 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTGAG........................... 24 3 2 1.00 2 2 0 0 0 0 0 0
..................................................................................................................................................................................................TCATATAGATGTAAGAATAACTGTT............................... 25 0 2 1.00 2 2 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTACGAATATCTGTTTTGA........................... 24 2 2 1.00 2 2 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTGAGATC....................... 28 3 2 1.00 2 2 0 0 0 0 0 0
...........................................................................................................................................................................................................TGTAAGAATAACTGTTTTGAGAAA....................... 24 2 2 1.00 2 1 1 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAGGAATAACTGT................................ 19 1 2 1.00 2 0 0 2 0 0 0 0
.......................................................................................................................................................................................................TAGATGTACGAATAACTGTTTTGAGC......................... 26 1 2 1.00 2 0 2 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTACGAATATCTGTTTTGAGCAG....................... 28 2 2 1.00 2 0 2 0 0 0 0 0
...................................................................................................................................................................................................CATATAGATGTAAGAATAACTG................................. 22 0 2 1.00 2 0 0 0 0 0 2 0
.........................................................................................................................................................................................TAAAAATGGTCATATAGATATAAGAA....................................... 26 2 4 1.00 4 2 1 0 1 0 0 0
..................................................................................................................................................................................................TCATATAGATGTAAGAATAACTGTTT.............................. 26 0 2 1.00 2 1 1 0 0 0 0 0
............................................................................................................................................................................................................GTAAGAATAACTGTTTTGAGC......................... 21 0 2 1.00 2 0 0 1 1 0 0 0
......................................................................................................................................................................................................ATAGATGTAAGAATAACTGTTTTGAGCA........................ 28 0 2 1.00 2 1 1 0 0 0 0 0
...........................................................................................................................................................................................................TGTAAGAATAACTGTTTTGAGCAGC...................... 25 0 2 1.00 2 1 0 1 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTCCAGCA........................ 27 2 2 1.00 2 2 0 0 0 0 0 0
......................................................................................................................................................................................................ATAGATGTAAGAATAACTGTT............................... 21 0 2 1.00 2 2 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACGGTTTTGAACAG....................... 28 2 4 1.00 4 2 2 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACGGTTTTAAT.......................... 25 3 2 1.00 2 2 0 0 0 0 0 0
...........................................................................................................................................................................................................TGTAAGAATAACTGTTTTGAGAAACT..................... 26 2 2 1.00 2 2 0 0 0 0 0 0
......................................................................................................................................................................................................ATAGATGTACGAATAACTGTTTTGA........................... 25 1 2 1.00 2 2 0 0 0 0 0 0
.........................................................................................................................................................................................TAAAAATGGTCACATAGATGTACGAATA..................................... 28 3 2 1.00 2 2 0 0 0 0 0 0
........................................................................................................................................................................................................AGATGTAAGAATAACTGTTTTGAGAAACT..................... 29 2 2 1.00 2 1 1 0 0 0 0 0
.........................................................................................................................................................................................................GATGTAAGAATAACTGTTTTGAGCAGC...................... 27 0 2 1.00 2 2 0 0 0 0 0 0
.....................................................................................................................................................................................TCGCTAAAAATAGTCTTATAGA............................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................................................................................................................GTAAGAATAACTGTTTTGAGAAAC...................... 24 2 2 1.00 2 0 0 0 2 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTAAGC......................... 26 1 2 1.00 2 1 1 0 0 0 0 0
......................................................................................................................................................................................................ATAGATGTAAGAATAACTGT................................ 20 0 2 1.00 2 0 0 0 0 0 2 0
..........................................................................................................................................................................................................ATGTAAGAATAACTGTTTT............................. 19 0 2 1.00 2 0 0 0 0 0 0 2
.......................................................................................................................................................................................................TAGATGTACGAATATCTGTTTTGAGC......................... 26 2 2 1.00 2 0 1 0 1 0 0 0
...................................................................................................................................................................................................CACATAGATGTAAGAATAACTGTT............................... 24 1 2 1.00 2 1 0 0 1 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTA............................. 22 1 2 1.00 2 1 1 0 0 0 0 0
........................................................................................................................................................................................TAAAAAATTGTCATATAGATGTAAGAA....................................... 27 3 9 0.89 8 4 4 0 0 0 0 0
.............................................................................................................TTATGACAGAAATTCGGAAAATTA..................................................................................................................... 24 3 4 0.75 3 1 0 0 2 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACGGTTTTTAA.......................... 25 3 4 0.75 3 0 1 2 0 0 0 0
.........................................................................................................................................................................................TAAAGATGGTCATATAGATGTAAGAA....................................... 26 2 3 0.67 2 1 1 0 0 0 0 0
........................................................................................................................................................................................TAAAAAATTGTCATATAGATGTAAGA........................................ 26 3 9 0.67 6 4 1 0 0 1 0 0
.........................................................................................................................................................................................TAAAAATGGTCACATAGATGTACGA........................................ 25 3 3 0.67 2 0 1 0 0 1 0 0
.........................................................................................................................................................................................TAAAAATGGTCACATAGATGTAAGAAA...................................... 27 3 3 0.67 2 1 0 0 0 1 0 0
...........................................................................................................................................................................................................TGTAAGAATAACTGTTTTGAGAAAC...................... 25 2 2 0.50 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................TGTAAGAATAACGGTTTTGAGCA........................ 23 1 2 0.50 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................................TTGATGTACGAATATCTGTTTTGA........................... 24 3 2 0.50 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................TATAGATGTAAGAATAACTGTTTTGAGAAT....................... 30 2 2 0.50 1 0 1 0 0 0 0 0
......................................................................................................................................................................................................ATAGATGTAAGAATAACT.................................. 18 0 2 0.50 1 0 0 1 0 0 0 0
.........................................................................................................................................................................................................GATGTAAGAATAACTGTTTTGAG.......................... 23 0 2 0.50 1 0 0 0 1 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTGAGTAG....................... 28 1 2 0.50 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................TAAGAATAACTGTTTTGAGAAACT..................... 24 2 2 0.50 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTGAGATA....................... 28 3 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTGCG.......................... 25 1 2 0.50 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................GATGTAAGAATAACTGTTTTGAGC......................... 24 0 2 0.50 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................ATATAGATGTAAGAATAACTGTT............................... 23 0 2 0.50 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................TAAGAATAACTGTTTTGAGCAACTAA................... 26 1 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTGAGAAA....................... 28 2 2 0.50 1 0 1 0 0 0 0 0
..................................................................................................................................................................................................TCACATAGATGTAAGAATAACT.................................. 22 1 2 0.50 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................TATAGATGTAAGAATAACTGTTT.............................. 23 0 2 0.50 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................GTAAGAATAACTGTTTTGAGAA........................ 22 1 2 0.50 1 0 1 0 0 0 0 0
.............................................................................................................................................................................................................TAAGAATAACTGTTTTGAGAAACTAAT.................. 27 2 2 0.50 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................TAAGAATAACTGTTTTGAGAAA....................... 22 2 2 0.50 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGAT............................... 20 1 2 0.50 1 1 0 0 0 0 0 0
......................................................................................................................................................................................TGCTAAAAATGGTCACATAGATGTAAGA........................................ 28 3 4 0.50 2 2 0 0 0 0 0 0
.........................................................................................................................................................................................TAAAAATGGTCATATAGATGTAAGAATAAA................................... 30 2 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................GGATGTAAGAATAACTGTTTTGAGAAACT..................... 29 3 2 0.50 1 0 0 0 1 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTGATT......................... 26 2 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................AGATGTAAGAATAACTGTTCTGAGCAG....................... 27 1 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTGAGCAA....................... 28 1 2 0.50 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................TATAGATGTAAGAATAACTGTTTTGAG.......................... 27 0 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAGGAATAACTGTTTTGAGC......................... 26 1 2 0.50 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................ATAGATGTAAGAATAACTGTTAAT............................ 24 3 2 0.50 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................ATAGATGTAAGAATAACTTTTTTGA........................... 25 1 2 0.50 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................AGATGTAAGAATAACTGTTTTGAGCAG....................... 27 0 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................AGATGTAAGAATAACTGTTTTGAGAAAC...................... 28 2 2 0.50 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................GCACATAGATGTAAGAATAACT.................................. 22 2 2 0.50 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTGATAT........................ 27 3 2 0.50 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................TGTAAGAATAACTGTTTTGAGCA........................ 23 0 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTAAG.......................... 25 1 2 0.50 1 0 1 0 0 0 0 0
...................................................................................................................................................................................................CATATAGATGTAAGAATAACTGTT............................... 24 0 2 0.50 1 0 1 0 0 0 0 0
......................................................................................................................................................................................................ATAGATGTAAGAATAACTGTTTTCT........................... 25 2 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTAA........................... 24 1 2 0.50 1 0 1 0 0 0 0 0
......................................................................................................................................................................................................ATAGATGTAAGAATAACTGTTTTGATA......................... 27 2 2 0.50 1 0 0 1 0 0 0 0
........................................................................................................................................................................................................AGATGTAAGAATAACTGTTTTGAGC......................... 25 0 2 0.50 1 0 0 0 0 1 0 0
.....................................................................................................................................................................................................CATAGATGTAAGAACAACTGTTTTGAGC......................... 28 2 2 0.50 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................GATGTACGAATATCTGTTTTGATCAGC...................... 27 3 2 0.50 1 0 1 0 0 0 0 0
..................................................................................................................................................................................................TCATATAGATGTAAGAATAACGGTT............................... 25 1 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGATTTGAGAAAC...................... 29 3 2 0.50 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................ATGTAAGAATAACTGTTTTGAGCA........................ 24 0 2 0.50 1 0 0 1 0 0 0 0
...........................................................................................................................................................................................................TGTAAGAATAACTGTTTTGAGC......................... 22 0 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACGGT................................ 19 1 2 0.50 1 0 0 1 0 0 0 0
.........................................................................................................................................................................................TAAAAATGGTCACATAGACGTAAGAA....................................... 26 3 4 0.50 2 1 1 0 0 0 0 0
...........................................................................................................................................................................................................TGTAAGAATAACTGTTTTGAGA......................... 22 1 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAACAATAACTG................................. 18 1 2 0.50 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAACAACTGTTTTGAGA......................... 26 2 2 0.50 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTCA........................... 24 1 2 0.50 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................................GATGTAAGAATAACTGTTTTGAGAAACT..................... 28 2 2 0.50 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................CATAGATGTACGAATATCTGTTTTGA........................... 26 3 2 0.50 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................TGGATGTAAGAATAACTGTTTTGAGCAA....................... 28 2 2 0.50 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................TATAGATGTAAGAATAACTGTTTTGAGAA........................ 29 1 2 0.50 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................TCGCTAAAAATTGTCTTATAGAAGT............................................ 25 3 4 0.50 2 1 1 0 0 0 0 0
....................................................................................................................................................................................................ACATAGATGTAAGAATAACTGTTT.............................. 24 1 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGATTTGAGCA........................ 27 1 2 0.50 1 0 1 0 0 0 0 0
.............................................................................................................................................................................................................TAAGAATAAATGTTTTGAGC......................... 20 1 2 0.50 1 0 0 1 0 0 0 0
......................................................................................................................................................................................................ATAGATGTAAGAATAACTGATTTGAGC......................... 27 1 2 0.50 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................ACATAGATGTAAGAATAACTGTTTTGA........................... 27 1 2 0.50 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................GTAAGAATAACTGCTTTGAGCAACTAAT.................. 28 2 2 0.50 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................TAAAATGGTCATATAGATGTAAGAATA..................................... 27 2 4 0.50 2 1 0 0 0 1 0 0
.........................................................................................................................................................................................TAACAATGGTCATATAGATGTAAGGATA..................................... 28 3 2 0.50 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................GATGTAAGAATAACTGTTTTGAGAA........................ 25 1 2 0.50 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................TCATATAGATGTAAGAATAACAGGTT.............................. 26 2 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTGAGCAGC...................... 29 0 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTGATA......................... 26 2 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................TGATGTAAGAATAACTGTTTTGA........................... 23 1 2 0.50 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................TAAAAATGGTCACAGAGATGTAAGAATAA.................................... 29 3 2 0.50 1 0 0 0 1 0 0 0
.............................................................................................................................................................................................................TAAGAATAACTGTTTTGAGAAACTAA................... 26 2 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTTTTTTGAG.......................... 25 1 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAACAATAACTGTTTTGAGCA........................ 27 1 2 0.50 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTA............................ 23 1 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACGGTTTTGAGG......................... 26 2 2 0.50 1 0 1 0 0 0 0 0
............................................................................................................................................................................................................GTAAGAATAACTGTTTTGAG.......................... 20 0 2 0.50 1 0 0 1 0 0 0 0
.....................................................................................................................................................................................................CATAGATGTAAGAATAACTGTTTTGA........................... 26 1 2 0.50 1 0 1 0 0 0 0 0
............................................................................................................................................................................................AAATCGTCACATAGATGTAAGAATAACT.................................. 28 2 2 0.50 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTGAGCAAT...................... 29 2 2 0.50 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................TCATATAGATGTAAGAATAACGGTTT.............................. 26 1 2 0.50 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTTAGAATAACTGTTTTGAGC......................... 26 1 2 0.50 1 0 0 1 0 0 0 0
.........................................................................................................................................................................................................GATGTAGGAATAACTGTTTTGAGCAGC...................... 27 1 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGATTTTA........................... 24 2 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTCTGAGCAG....................... 28 1 2 0.50 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTGAGAAACT..................... 30 2 2 0.50 1 0 0 0 1 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACGGTTTTGAG.......................... 25 1 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTGAGCTT....................... 28 2 2 0.50 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................GTAAGAATAACTGTTTTGAGAAT....................... 23 2 2 0.50 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................CATAGATGTAAGAATAACTGT................................ 21 1 2 0.50 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................GTCATATATATGTAAGAATAACGGTT............................... 26 2 6 0.50 3 3 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACGGGTTTGAAC......................... 26 3 4 0.50 2 1 0 0 0 1 0 0
.......................................................................................................................................................................................................TAGATGTACGAATATCTGTTTTGAGCA........................ 27 2 2 0.50 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................GTCACATAGATGTAAGAATAACTGTT............................... 26 1 2 0.50 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTACGAATATCTGTTTTGAGCAGC...................... 29 2 2 0.50 1 0 0 0 0 1 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTGAGGAAC...................... 29 2 2 0.50 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................GTAAGAATAACTGTTTTGAGAAACT..................... 25 2 2 0.50 1 0 1 0 0 0 0 0
.............................................................................................................................................................................................................TAAGAATAACTGTTTTGAGAA........................ 21 1 2 0.50 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................CTAGATGTAAGAATAACTGTTT.............................. 22 1 2 0.50 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACGGTTTTGAGGAG....................... 28 2 2 0.50 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................ATAGATGTAAGAATAACTGTTTTGAGAAAC...................... 30 2 2 0.50 1 0 0 0 1 0 0 0
............................................................................................................................................................................................................GTAAGAATAACTGTTT.............................. 16 0 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTTTTTTGAGCA........................ 27 1 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................AGATGTCAGAATAACTGTTTTGAGCAG....................... 27 1 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAAAATAACTGTTTTGA........................... 24 1 2 0.50 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................TGTAAGAATAACTGTTTTGAG.......................... 21 0 2 0.50 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................TATAGATGTAAGAATAACGGTTTT............................. 24 1 2 0.50 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................TATAGATGTAAATATAACTGTTTTGA........................... 26 2 2 0.50 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTGTTGAGC......................... 26 1 2 0.50 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................TAGGAATAACTGTTTTGAGCAGCGAAT.................. 27 2 2 0.50 1 0 0 1 0 0 0 0
..................................................................................................................................................................................................TCATATAGATGTAAGAATAACGGT................................ 24 1 2 0.50 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGTATAACTGTTTTGCGCA........................ 27 2 2 0.50 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................TCACATAGATGTAGGAATAACTGTTT.............................. 26 2 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGCAAGAATAACTGTTTTGA........................... 24 1 9 0.44 4 2 2 0 0 0 0 0
........................................................................................................................................................................................CTAAAAATGGTCACATAGATGTAAGAA....................................... 27 2 3 0.33 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................TGGTCATATAGATGTAAGAATAACTGT................................ 27 1 3 0.33 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................................TCGATGTAAGAATAACTGTTTTGAGAA........................ 27 2 3 0.33 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................TAAAAATGGTCATATAGATGTAAGAAT...................................... 27 1 3 0.33 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTTTTTTGAGAA........................ 27 2 3 0.33 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTAAT............................ 23 3 3 0.33 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................AGATGTAAGAATAACTGTTTTGGGA......................... 25 2 3 0.33 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGAAGTAAGAATAACTGT................................ 19 1 3 0.33 1 0 0 1 0 0 0 0
.........................................................................................................................................................................................CAAAAATGGTCACATAGATGTAAGAA....................................... 26 3 3 0.33 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................TACGAATATCTGTTTTGAGCAGCT..................... 24 2 3 0.33 1 0 0 0 1 0 0 0
.............................................................................................................................................................................................................TAAGAATAACTGTTTTGAGAAC....................... 22 2 3 0.33 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................GCTAAAAATGGTCATATAGATGTAAGA........................................ 27 1 3 0.33 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................AAAAATGGTCATATAGATGTAAGA........................................ 24 1 3 0.33 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................TAAAAACGGTCATATAGATGTAAGAA....................................... 26 2 3 0.33 1 0 0 1 0 0 0 0
...................................................................................................................................................................................................CATATAGATGTAAGAA....................................... 16 0 3 0.33 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................................TAGAAGTAAGAATAACTGTTT.............................. 21 1 3 0.33 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTGAGAATAACTGTTTTGA........................... 24 1 3 0.33 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................TTATAGAAGTAAGAATAACTG................................. 21 2 3 0.33 1 0 0 1 0 0 0 0
............................................................................................................................................................................................................GTACGAATATCTGTTTTGAGCAG....................... 23 2 3 0.33 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................TAAAAATGGTCATATAGATGTAAGAAA...................................... 27 2 3 0.33 1 0 0 0 1 0 0 0
.............................................................................................................................................................................................AATGGTCACATAGATGTAAGAATAACT.................................. 27 2 3 0.33 1 0 0 0 1 0 0 0
.......................................................................................................................................................................................GCTAAAAATGGTCACATAGATGTAAGA........................................ 27 2 3 0.33 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGAAGTAAGAATAACT.................................. 17 1 3 0.33 1 0 0 0 1 0 0 0
........................................................................................................................................................................................CTAAAAATGGTCATATAGATGTAAGAA....................................... 27 1 3 0.33 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................TAAAAATGGTCATATAGATGTAAG......................................... 24 1 3 0.33 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................AAAAATGGTCATATAGATGTAAGAA....................................... 25 1 3 0.33 1 0 0 0 0 1 0 0
.........................................................................................................................................................................................................GATGTAAGAATAACTGTTTTGAGCATA...................... 27 2 3 0.33 1 0 0 1 0 0 0 0
..........................................................................................................................................TGGCAAAACTTTGATATTTACAATT....................................................................................... 25 3 3 0.33 1 0 0 0 1 0 0 0
.............................................................................................................................................................................................AATGGTCATATAGATGTAAGAATAACTG................................. 28 1 3 0.33 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................GCTAAAAATGGTCACATAGATGTAAGAA....................................... 28 2 3 0.33 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTATGTATAACTGTTTTGCGC......................... 26 3 3 0.33 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................TAGAAGTAAGAATAACTGCTTTGAGC......................... 26 2 3 0.33 1 0 0 1 0 0 0 0
...............................................................................................................................................................................................TGGTCACATAGATGTAAGAATAACTG................................. 26 2 3 0.33 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................TGGTCACATAGATGTAAGAATAACT.................................. 25 2 3 0.33 1 0 1 0 0 0 0 0
........................................................................................................................................................................................TTAAAAATGGTCACATAGATGTAAGAA....................................... 27 3 3 0.33 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................GCTAAAAACGGTCATATAGATGTAA.......................................... 25 2 3 0.33 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................GTCATATAGATGTAAAAAAAA.................................... 21 2 3 0.33 1 0 1 0 0 0 0 0
........................................................................................................................................................................................CTAAAAATGGTCATATAGATGTAAG......................................... 25 1 3 0.33 1 0 0 1 0 0 0 0
........................................................................................................................................................................................TAAAAAATTGTCATATAGATGTAAGAAT...................................... 28 3 9 0.33 3 1 2 0 0 0 0 0
.........................................................................................................................................................................................TAAAAATGGTAATATAGATGTAAGAA....................................... 26 2 3 0.33 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTTTTTTGAACTG....................... 28 3 4 0.25 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATACTTGTTTTGAGC......................... 26 2 4 0.25 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................TAAAAATGTTCATATAGATGTAAGAA....................................... 26 2 4 0.25 1 0 0 0 0 1 0 0
.....................................................................................................................................................................................TCGCTAAAAATTGTCTTATAGAAGTAAGA........................................ 29 3 4 0.25 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................TATAGATGTAAGAAT...................................... 15 0 4 0.25 1 0 0 1 0 0 0 0
.............................................................................................................................................................................................AATGGTCATATAGATGTAAGAATAAA................................... 26 2 4 0.25 1 0 1 0 0 0 0 0
............................................................................................................................................................................................AAATGGTCATATGGATGTAAGAATAAC................................... 27 2 4 0.25 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................GATGTAAGAATAACGGTTTTGAACAGCT..................... 28 2 4 0.25 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACGGGTTTGAACA........................ 27 3 4 0.25 1 1 0 0 0 0 0 0
...........................................................................................................................................................TTACAATCGGAATTTTCATCATAACTT.................................................................... 27 0 4 0.25 1 0 0 0 1 0 0 0
.....................................................................................................................................................................................................TATAGATGTAAGAATAACGGTTTTGAACA........................ 29 2 4 0.25 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATACTTGTTTTGAGCA........................ 27 2 4 0.25 1 1 0 0 0 0 0 0
............................................................................................................................................................................................AAATGGTCATATAGATGTAAGAATAAC................................... 27 1 4 0.25 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................TATAGATGTAAGAATAACTGTTTTGAA.......................... 27 1 4 0.25 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................ATAGATGTAAGAATAACTGTTTTGAAA......................... 27 2 4 0.25 1 1 0 0 0 0 0 0
............................................................................................................................................................................................AAATGGTCATATAGATGTAAGAATA..................................... 25 1 4 0.25 1 0 0 1 0 0 0 0
.........................................................................................................................................................................................TAAAAATGGCCACATAGATGTAAGAA....................................... 26 3 4 0.25 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................TATATGTAAGAATAACGGTTTTGAGG......................... 26 3 4 0.25 1 0 0 0 0 1 0 0
............................................................................................................................................................................................AAATGGTCACATAGATGTACGAATA..................................... 25 3 4 0.25 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................TAAAATGGTCATATAGATGTACGAATA..................................... 27 3 4 0.25 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTGAACA........................ 27 1 4 0.25 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGTATAACTGTTTTGAAC......................... 26 2 4 0.25 1 0 1 0 0 0 0 0
........................................................................................................................................................................................TAAAAAATGGTCATATAGATGTAAGA........................................ 26 3 4 0.25 1 0 0 0 0 1 0 0
........................................................................................................................................................................................TAAAAAATTGTCATATAGATGTAAGAATA..................................... 29 3 8 0.25 2 2 0 0 0 0 0 0
.............................................................................................................................................................................................AATGGTCACATAGATGTACGAATA..................................... 24 3 4 0.25 1 0 1 0 0 0 0 0
.............................................................................................................................................................................................................TAAGAATAACTGTTTTGAGCATT...................... 23 2 4 0.25 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................AAAATGGTCATATAGATGTAAGAATAAGC.................................. 29 3 4 0.25 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGAATAACTGTTTTGAACAAG...................... 29 3 4 0.25 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................TGGTCATATAGATATAAGAATAACGG................................. 26 3 5 0.20 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGATTAACTGTTTTGAACA........................ 27 2 5 0.20 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................TGTAAGAATAACGGTTTTTAACAGCT..................... 26 3 5 0.20 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................TAGATGTAAGATTAACTGTTTTGAAC......................... 26 2 5 0.20 1 1 0 0 0 0 0 0
..............................................................................................................TATGACAGAAATTCGGAAAATTA..................................................................................................................... 23 3 5 0.20 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................TAAAAATGGTCACATAGACGTAAGA........................................ 25 3 5 0.20 1 1 0 0 0 0 0 0
................................................................................................................................................................................................GGTCACATAGATGTAAGA........................................ 18 2 10 0.20 2 0 2 0 0 0 0 0
...................................................TATAACATTCCAAATTCAGCC.................................................................................................................................................................................. 21 1 5 0.20 1 0 0 0 0 1 0 0
........................................................................................................................................................................................CAAAAAATTGTCATATAGATGTAAGA........................................ 26 2 5 0.20 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................AGATGTAAGAATAACTATTTTGAGCA........................ 26 1 5 0.20 1 0 0 1 0 0 0 0
............................................................................................................................................................TACAATCGGAATTTTC.............................................................................. 16 0 5 0.20 1 0 0 0 0 1 0 0
.......................................................................................................................................................................................GCTAAAAATTGTCTTATAGAAGTAAGAA....................................... 28 3 6 0.17 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................TGTAAGAATAACGGGTTTGAACAGC...................... 25 3 6 0.17 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................ATAGATATAAGAATAACGGTTTTGAA.......................... 26 3 6 0.17 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGGTGCAAGAATAACTGTTTGGA........................... 24 3 12 0.17 2 2 0 0 0 0 0 0
.......................................................................................................................................................................................GCTAAAAATTGTCTTATAGAAGTA........................................... 24 3 6 0.17 1 0 0 1 0 0 0 0
...........................................................................................................................................................................................AAAATGGTCATATAGATGTAAGAA....................................... 24 1 6 0.17 1 1 0 0 0 0 0 0
............................................................................................................................................................................................AAATGGTCATATAGATGTAAGA........................................ 22 1 6 0.17 1 0 1 0 0 0 0 0

Anti-sense strand reads

TGTACCACCGCGTCTTCCGGAAGTCCCCCGTTGCGTACTGCGAGCTGTTCCATATTGTAAGGTTTAAGTCCGAAAATAAAAATATCAATTCCGTTTTTTTGACTAATGAAATACTGGCTTTAAGCCTTTTAGCAGAAAACGGTTTTTAAACTATAAATGTTAGCCTTAAAAGTAGTATTGAAGCGATTTTTATCAGTATATCTACATTCTTATTGACAAAACTCGTCGATTAATGGTTACGATTGCTAGG
**************************************************................((((..((((..(((((....)))))..))))..)))).....((((((..(((((((.((((((.(((...............)))))))....)).)))))))..))))))....((((....)))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 M023
head
 SRR902008
ovaries
 GSM343915
embryo
........................................CGAGCTGTTCCATATTGTA............................................................................................................................................................................................... 19 0 3 1.33 4 0 4 0 0 0 0 0 0 0 0
..........................................................................................................................................................AAATGTTAGCCTTAAAAGTAGTAT........................................................................ 24 0 4 1.00 4 0 4 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CAGTATATCTACATTCTT....................................... 18 0 3 1.00 3 0 3 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AGAATATCTTCATTCTTATTGACAAAA............................. 27 2 3 1.00 3 3 0 0 0 0 0 0 0 0 0
.......................................................TGTAAGGTTTAAGTCCGAAAATAAAA......................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................TTGTTGACTAATGAAGTACTGGCT................................................................................................................................... 24 2 3 1.00 3 2 0 0 1 0 0 0 0 0 0
...................................................................................ATCAATTCCGTTTTTTTG..................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGACAAAACTCGTCGATTAATGGTT............ 25 0 13 0.85 11 0 0 11 0 0 0 0 0 0 0
.......................................................................................................................................................................................CGATTTTTACCAGTGTATCTACATTC......................................... 26 2 3 0.67 2 1 0 0 0 1 0 0 0 0 0
..............................................................................................TTTGTTGACTAATGAAGTACTGGCT................................................................................................................................... 25 2 3 0.67 2 2 0 0 0 0 0 0 0 0 0
...................................TACTGCGAGCTTGTCCGTA.................................................................................................................................................................................................... 19 3 17 0.59 10 4 0 0 5 1 0 0 0 0 0
...........................................................................................................................................................................................................ACATTCTTATTGACAAAACTCTTTGAT.................... 27 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................GGATTTTCAATTATAAATGTTAGCCT.................................................................................... 26 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................AGTGTATCTACATTCTTATTGACTA............................... 25 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................AGTATATCTACATTCTTAT..................................... 19 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................AGTGTATCTACATTCTTATTGAC................................. 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CGGTTTTTCAACTATAAATGTTAGCCT.................................................................................... 27 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................CGTTTTGTTGACTAATGAAGTACTGGCT................................................................................................................................... 28 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CAGTGTATCTACATTCTTTTTG................................... 22 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACAAAACTCGTCGATTAATGGTT............ 23 0 14 0.43 6 0 0 6 0 0 0 0 0 0 0
..................................................................................................................................................................................................AGTATAGCTACATTCTTATTGCCAAATCT........................... 29 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................AGAATATCTTCATTCTTATTGACAA............................... 25 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0
.....................................CTGCGAGCTGTTCCATATTGTAAGGTTT......................................................................................................................................................................................... 28 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................CGATTTCTACCAGTATATCTACATTC......................................... 26 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................CGATTTTTACCCGTATATCTACATTCT........................................ 27 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................GATTTTTACCAGTGTATCTACATTCT........................................ 26 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................AGCCTTAAAAGTAGTATTGAAGCGA................................................................ 25 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................TTAGCCTTAAAAGTAGTATTGAAG................................................................... 24 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................AGCCTTAAAAGTAGTATTGAAGCGAT............................................................... 26 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................AAATACTGGCTTTAAGCCT........................................................................................................................... 19 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................AAGCGATTTTTAACAGAATATCTTCA............................................ 26 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................AGATTTTTAACAGTGTATCTACATTC......................................... 26 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................AAAACGGTTTTTCAACTATAAATGTT......................................................................................... 26 1 15 0.20 3 1 0 0 2 0 0 0 0 0 0
........................................................................................................................................................................................................................CAAAACTCGTCGATTAATGGTT............ 22 0 16 0.19 3 0 0 3 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TCATTCTTATTGACAAAACTCGTTGAT.................... 27 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GACAAAACTCGTCGATTAATGGTT............ 24 0 14 0.14 2 0 0 0 0 0 0 2 0 0 0
.............................................................................................................................................................GGTTAGCCTTAAAAGTCGT.......................................................................... 19 2 8 0.13 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................AAGCGGGTTTTCAACTATAAATGTT......................................................................................... 25 3 19 0.11 2 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................AACGGTTCTTCAACTATAAAT............................................................................................ 21 2 20 0.10 2 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................................AGGTTAGCCTTAAAAGTCGTT......................................................................... 21 3 10 0.10 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................TGACAAAACTCGTCGATTAATG............... 22 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
..................................TTACTGCGAGCTTTTCCGTA.................................................................................................................................................................................................... 20 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0
.......................................GCGTGCTGTCCCAAATTGT................................................................................................................................................................................................ 19 3 11 0.09 1 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................TTGAAGCGATTTTTA.......................................................... 15 0 12 0.08 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACAAAACTCGTCGATTAATGGTTACGA........ 27 0 13 0.08 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................CGACGATTAATGGTTACGATTGCT... 24 1 13 0.08 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................ATACTGGCTGTAAGC............................................................................................................................. 15 1 13 0.08 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................TCGTCGACTAATGGTTACGATTGCT... 25 1 14 0.07 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TAACAAAACTCGTCGATTAATGGTT............ 25 1 14 0.07 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACAAAACTCGTCGATTAATGGGT............ 23 1 14 0.07 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................ATTGACAAAACTCTTTGATTAATGGTT............ 27 2 14 0.07 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................AAAACGGTTCTTCAACTATAAATGTT......................................................................................... 26 2 15 0.07 1 0 0 0 1 0 0 0 0 0 0
.............................................................................AAAAATGTCTATTCTGTTTTTT....................................................................................................................................................... 22 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................AAAACGGATTTTCAACTATAAATGTT......................................................................................... 26 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................AAACGGTTTCTCAACTATAAATGTT......................................................................................... 25 2 16 0.06 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AACTCGTCGATTAATGGTT............ 19 0 18 0.06 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACTCGTCGATTAATGGTT............ 18 0 18 0.06 1 0 0 1 0 0 0 0 0 0 0
...................................TACTGCGAGCTTGTCCTTA.................................................................................................................................................................................................... 19 3 18 0.06 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................CTCGTCGATTAATGGTT............ 17 0 18 0.06 1 0 0 1 0 0 0 0 0 0 0
......................................................TTGTAAGGTTCAAGT..................................................................................................................................................................................... 15 1 19 0.05 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CGATTAATGGTTACGAT....... 17 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GACAAAACTCGTCGATTAA................. 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TTATTGACAAAACTCGTCGATTAAT................ 25 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................ACAAAACTCGTCGATTAATGG.............. 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................TTGACAAAACTCGTCGATT................... 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGACAAAACTCGTCGATTA.................. 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TGGCTTTAAGCCTTT......................................................................................................................... 15 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................AAACGGTTCTTCAACTATAA.............................................................................................. 20 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................AAAGTAGTATCGAGGCGTTT.............................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:8996752-8997001 - dsi_3811 ACATGGTGGCGCAGAAGGCCTTCAGGGGGCAACGCATGAC--GCTCGACAAGGTATAACATTCCAAATTCAGGCT-TTTATTT-TTATAGTTAAGGCA-AAAAAACTGAT-TACT--TTAT----------------------------------------------------------------GACCGAAATTCGGAAAATCGT-CTTT-TGC--CAAAAA-TTTGATATTTACAATCGGAATTTTCATCATAACTTCGCTAAAAATAGTCATATAGATGTAAGAATAAC--------------------------TGTTTTGAGCAGCTAATTACCAATGCTAACGATCC
droSec2 scaffold_15:560985-561234 + ACATGGTGGCGCAGAAGGCCATCAGGGTGCAACGCATGAC--GCTCAACAAGGTATAACATTCCAAATTCAGGCT-TTTATTT-TCATAGTTATGGCA-AAAAAACTGAT-TACT--TTAT----------------------------------------------------------------GACCGAAATTCGGAAAATCGT-CTTT-TGC--CAAAAA-TTTGATATTTACAATCAGACTTTTCATCATAACTTCGCTAAAAATAGTCATATATATGTAAGAGTAAC--------------------------TGTTTTGAGCAGCTAATTACCAATGCTAACGATCC
dm3 chrX:9518586-9518795 + GC------------------------------------------TCAACGAGGTATAACATTCCATATTCAGGCT-ATTATTT-TTAAAGTTATGGCC-AAAAAACTGAT-TATT--TGAT----------------------------------------------------------------GACCGAAATTAGGAAAAACGG-ATTT-AGC--CAAAAA-GTTGATATTTACAAACGGAATTTTCGTCATAACTTGGCTAAAAATGCTCATATAGATGTAAGAATAAC--------------------------TGTTTTGAGCAGCTAATTACCAGTGCTAACTATCC
droEre2 scaffold_4690:5928705-5928922 + ATG-----------------------------------ACGAGCGCAACGAGCTATAACATTCCATATTCAGACA-ATTCTTT-TTAAAGTTATCGAA-AAAAAACGGAT-TATT--TTAT----------------------------------------------------------------GACCGAAATTCGAAAAAACGG-ATTT-TGG--CAAAAATATAAATATTTTTAATGGGAATTTTAATCATAACTTGGCCAAAAATGACCACAGAGATGAAAGAATAAC--------------------------TGTTTTGAGCAGCTAATTACCAATGCTAACGATCC
droYak3 X:2863147-2863353 + GC------------------------------------------TCGACGAGGTATGGCATTCCATACTCTGACA-ATTATTT-TTAAAGTTGTGGCA-AAAAAACAGAT-TATT--TTAT----------------------------------------------------------------GCCGGAAATTCAGAAAAACGA-CTTT-TGG--CAAATA-ATCGCTATTTTCTATGGGTATTTTCATCATAACTTCCCTAAAAATGATGCTAAAGATAAAAGAAAAAC--------------------------TTTTTTGAGCAGCTTATTACTTATACTAACCA---
droEug1 scf7180000409209:90098-90308 + GT------------------------------------------TCAACGAGATATTACATTCCATATTCCGACT-ATTTTTG-ACAAAGTTATGGTA-ACAATTCTGAC-ATT---TTTT----------------------------------------------------------------AAGGACAAATCAGGATAACAA-TTTTATGG--CAATATTAACGATATTTTCCCTTGGATTTTAAGCCATAATTTAGCCCAAACAAGACTTAGAGCTAAAAGGAAAAC--------------------------AGTTTTGAGTAGCTAACGACCAATATAAACTACCC
droBia1 scf7180000302075:253818-254038 - GCAA-----------------------------------CGAACTCAACGAGGTAAGACATCCCTCGATCTGACG-ATTAGTT-TATTTTTAGCAGCCGAAAAAATTGAA-TTTTAGATTT----------------------------------------------------------------TTCTGAAAAATACAAGATTAATTTTT-ATG--CAAAAA-TTCGATTTTTATTTCCCGTTTTTCTGTCGTAACTCAGCCAAATAAAGGCCTAAAGATACAAGACCGAC--------------------------TGTTTTGAGCAGCTTGCTTCCATTGCTAACGATTC
droTak1 scf7180000415210:452473-452696 + GGG--------------------------AATTACATAACGAGTTCAACGAGGTATGACATTCCATATTTGGACC-ATTATTT-CCATTATTATGGAC-AAAATACTGAT-ATT---TTAG----------------------------------------------------------------GGTGGAAAATATGGATTCTAA-TTTC-CGA--CGAAAA--TAACCTTTTCTTTGTGGTTTTTCGGTCGTAATTTGGACAAATCAAGGCTCACAGCTAAAAGAATGAC--------------------------TGTTTTGAGCAGCTAACGACCTAAACTAACGATTC
droEle1 scf7180000491011:621719-621933 + ATG-----------------------------------ACGAATTCACCGAGGTATGACATTCCATCTTGTGGCC-ATTACTTCTCAGCGTTTTGATA-TAAAAACTGAA-TTTT----AA---------------------------------------------------------AGTTTTTTTTGGGGTTTCGGAG--------ACT-TGT--CAAAAA-AACAAAAT-CCTAAACAGTCCTTTTGTTGTAACTTGGCCAAAATTAGACGTATAGCCATAAGAGTGAC--------------------------TGTTTTGTAAAGCTGGCGACCTATACTACCCATCC
droRho1 scf7180000779333:545389-545598 - GC------------------------------------------TCAACGAGGTATGACATTCCATTTTTGGACC-ATTATTT-GTAATGTTATGGCC-AAAATACTGATATTTT--TTAT----------------------------------------------------------------GGTGAAAATTCAGAATTTCTT-TTTT-TAATGCAAAAA-CACGTTTTTTT---TAAGTGTTTTGGCTGTAATTTGGCCAAAATAAGTCGCAAAACCAAAAGAGTAAC--------------------------TGTTTTATGCAGCTAATGACCACAGCTAACAATCT
droFic1 scf7180000453927:1348440-1348664 + GGG--------------------------AAACCAAAGT--GGCCCAACTAGCTATGCCACCGA--ATGCA----------------ATTTAATTGTT-ATTTAACTGAT-CCTT--TAGT---------------------------------TAGTTCATAAAAACTGATTTGGGAAAGATCAGTTGACAATTCCG---------------GT--AGAAAA-CACTATATTT-TGAGTGGTTTTTTGGTTGTAATAAGGCCAAAAAGTGACTTACAGCGGAACCAAATAC--------------------------TGTTTTGAGCACCTTATGACCACAGTTAACGAGCC
droKik1 scf7180000302472:3314984-3315170 - TTT------------------------------------------TATAGATACAC-------------------------------------TGGGA-AATAAAATGAA-TAGGAAGTATTACTGAAAGCCAGAAAATTGTAATTTTCCTAAT-------------------------------TT---TTATACCC---------------TT--GCAGGG-T------------ATTATAATTTCAGTCAGAAGTTTGCAA------------CGCAGTGAAG--GAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCA--T-----CAACAGGGGAATC
droAna3 scaffold_13266:11255894-11255991 - CAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-AATCATATTTCCAAGCCTTCTCATCATCATATCTCAGCTAATAGAAGTCGGATGCAGAAATG--GCAT--------------------------AGCTTTCCGGATTCAGCATGC-------AGAGTAC
droBip1 scf7180000396733:214771-214793 + TCATGGATGTGATGAACATCTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XL_group1e:1471628-1471658 - ACATGGTGGCCCTGAACAGCTTGAGGAAGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_18:311804-311834 - ACATGGTGGCCTTGAACAGCTTGAGGAAGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000006624:767-967 - TC--------------------------------------------CGCGAGGTATAAAATTCTATATTCCGAATTATTATT---------TTTGGCG-AAAAAACTGAT-AATT--TGAT----------------------------------------------------------------GACCGACATTTTGAAAAACGG-ATTT-TGC--CAAAAA-GTTGATATTTACAAACGGAACTTTCGTCATAACTTCGCTAAAAATTGTCTTATAGAAGTAAGAATAAC--------------------------TGTTTTGAGAAACTAATTACCAGCGCTAACGATCC
droVir3 scaffold_12726:2831348-2831378 + GCATGACAGCCTTGAACAACTGCCAGAAGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACATGGTGGCGCAGAAGGCCTTCAGGGGGCAACGCATGAC--GCTCGACAAGGTATAACATTCCAAATTCAGGCT-TTTATTT-TTATAGTTAAGGCA-AAAAAACTGAT-TACT--TTAT----------------------------------------------------------------GACCGAAATTCGGAAAATCGT-CTTT-TGC--CAAAAA-TTTGATATTTACAATCGGAATTTTCATCATAACTTCGCTAAAAATAGTCATATAGATGTAAGAATAAC--------------------------TGTTTTGAGCAGCTAATTACCAATGCTAACGATCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------TGTTTTGA...........................24284.5016900002072984713000000
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------TGTTTTGAGA.........................26239.507900000094371910000000
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------TGTTTTGAGC.........................26218.00360000002220111000000
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------TGTTTTGAG..........................25216.5033000000112380000000
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------TGTTT..............................21214.50290000201013121000000
...................................................................................................................................................................................................................................................................................ATAGATGTAAGAATAAC--------------------------TGTTTTGA...........................25211.50230000000012110000000
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------TGTTTTGAGCA........................27210.0020000000011621000000
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------TGTT...............................2025.001000004000312000000
.....................................................................................................................................................................................................................................................................................AGATGTAAGAATAAC--------------------------TGTTTTGAGA.........................2525.001000000000640000000
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------TGTTTTG............................2324.50900000000702000000
...................................................................................................................................................................................................................................................................................ATAGATGTAAGAATAAC--------------------------TGTTTTGAG..........................2624.00800000000350000000
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------TG.................................1823.00600004000200000000
..................................................................................................................................................................................................................................................................................TATAGATGTAAGAATAAC--------------------------TGTTTTGA...........................2623.00600000000420000000
...................................................................................................................................................................................................................................................................................ATAGATGTAAGAATAAC--------------------------TGTTT..............................2222.50500000000221000000
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------TGTTTT.............................2222.50500000020201000000
...........................................................................................................................................................................................................................................................................................AAGAATAAC--------------------------TGTTTTGAGCA........................20202.1543000004300000000000
...........................................................................................................................................................................................................................................................................................AAGAATAAC--------------------------TGTTTTGAG..........................18202.1543000043000000000000
..........................................................................................................................................................................................................................................................................................TAAGAATAAC--------------------------TGTTTTGAGCA........................2122.00400000400000000000
.....................................................................................................................................................................................................................................................................................AGATGTAAGAATAAC--------------------------TGTTTTGAGCA........................2622.00400000000220000000
...................................................................................................................................................................................................................................................................................ATAGATGTAAGAATAAC--------------------------TGTTTTGAGC.........................2722.00400000000130000000
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------T..................................1721.50300000000012000000
......................................................................................................................................................................................................................................................................................GATGTAAGAATAAC--------------------------TGTTTTGAGA.........................2421.50300000001101000000
..................................................................................................................................................................................................................................................................................TATAGATGTAAGAATAAC--------------------------TGTTTTGAGA.........................2821.50300000010200000000
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------TGTTTTGAT..........................2521.50300000000210000000
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------TGTTTTGAGCAG.......................2821.50300000000021000000
...................................................................................................................................................................................................................................................................................ATAGATGTAAGAATAAC--------------------------TGTTTTG............................2421.50300000000111000000
.....................................................................................................................................................................................................................................................................................AGATGTAAGAATAAC--------------------------TGTTT..............................2021.50300000000111000000
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------TGT................................1921.50300000000012000000
.....................................................................................................................................................................................................................................................................................AGATGTAAGAATAAC--------------------------TGTTTTGAG..........................2421.50300002000100000000
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------TGTTTTGAA..........................2541.25500000000320000000
...................................................................................................................................................................................................................................................................................................................................TGAGCAGCTAATTACCAATGC.........21141.0715000001500000000000
...................................................................................................................................................................................................................................................................................ATAGATGTAAGAATAAC--------------------------TGTTTTGAGA.........................2721.00200000010010000000
...............................................................................................................................................................................................................................................................................TCATATAGATGTAAGAATAAC--------------------------TGT................................2421.00200000000200000000
.......................................................................................................................................................................................................................................................................................ATGTAAGAATAAC--------------------------TGTTTTGAGC.........................2321.00200000000200000000
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------TGTTTGAG...........................2421.00200000000200000000
...............................................................................................................................................................................................................................................................................TCATATAGATGTAAGAATAAC--------------------------TGTT...............................2521.00200000000200000000
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------TGTTTTGAGATC.......................2821.00200000000200000000
................................................................................................................................................................................................................................................................................CATATAGATGTAAGAATAAC--------------------------TG.................................2221.00200002000000000000
...............................................................................................................................................................................................................................................................................TCATATAGATGTAAGAATAAC--------------------------TGTTT..............................2621.00200000000110000000
.........................................................................................................................................................................................................................................................................................GTAAGAATAAC--------------------------TGTTTTGAGC.........................2121.00200000010001000000
...................................................................................................................................................................................................................................................................................ATAGATGTAAGAATAAC--------------------------TGTTTTGAGCA........................2821.00200000000110000000
........................................................................................................................................................................................................................................................................................TGTAAGAATAAC--------------------------TGTTTTGAGCAGC......................2521.00200000000101000000
...................................................................................................................................................................................................................................................................................ATAGATGTAAGAATAAC--------------------------TGTT...............................2121.00200000000200000000
......................................................................................................................................................................................................................................................................................GATGTAAGAATAAC--------------------------TGTTTTGAGCAGC......................2721.00200000000200000000
...................................................................................................................................................................................................................................................................................ATAGATGTAAGAATAAC--------------------------TGT................................2021.00200002000000000000
.......................................................................................................................................................................................................................................................................................ATGTAAGAATAAC--------------------------TGTTTT.............................1921.00200000200000000000
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------TGTTTA.............................2221.00200000000110000000
...................................................................................................................................................................................................................................................................................ATAGATGTAAGAATAAC--------------------------T..................................1820.50100000000001000000
......................................................................................................................................................................................................................................................................................GATGTAAGAATAAC--------------------------TGTTTTGAG..........................2320.50100000010000000000
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------TGTTTTGAGATA.......................2820.50100000000100000000
......................................................................................................................................................................................................................................................................................GATGTAAGAATAAC--------------------------TGTTTTGAGC.........................2420.50100000000010000000
.................................................................................................................................................................................................................................................................................ATATAGATGTAAGAATAAC--------------------------TGTT...............................2320.50100000000100000000
..................................................................................................................................................................................................................................................................................TATAGATGTAAGAATAAC--------------------------TGTTT..............................2320.50100000000100000000
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------TGTTTTGATT.........................2620.50100000000100000000
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------TGTTTTGAGCAA.......................2820.50100000000100000000
..................................................................................................................................................................................................................................................................................TATAGATGTAAGAATAAC--------------------------TGTTTTGAG..........................2720.50100000000100000000
...................................................................................................................................................................................................................................................................................ATAGATGTAAGAATAAC--------------------------TGTTAAT............................2420.50100000000100000000
.....................................................................................................................................................................................................................................................................................AGATGTAAGAATAAC--------------------------TGTTTTGAGCAG.......................2720.50100000000100000000
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------TGTTTTGATAT........................2720.50100000000100000000
........................................................................................................................................................................................................................................................................................TGTAAGAATAAC--------------------------TGTTTTGAGCA........................2320.50100000000100000000
................................................................................................................................................................................................................................................................................CATATAGATGTAAGAATAAC--------------------------TGTT...............................2420.50100000000010000000
...................................................................................................................................................................................................................................................................................ATAGATGTAAGAATAAC--------------------------TGTTTTCT...........................2520.50100000000100000000
...................................................................................................................................................................................................................................................................................ATAGATGTAAGAATAAC--------------------------TGTTTTGATA.........................2720.50100000000001000000
.....................................................................................................................................................................................................................................................................................AGATGTAAGAATAAC--------------------------TGTTTTGAGC.........................2520.50100000001000000000
.......................................................................................................................................................................................................................................................................................ATGTAAGAATAAC--------------------------TGTTTTGAGCA........................2420.50100000000001000000
........................................................................................................................................................................................................................................................................................TGTAAGAATAAC--------------------------TGTTTTGAGC.........................2220.50100000000100000000
........................................................................................................................................................................................................................................................................................TGTAAGAATAAC--------------------------TGTTTTGAGA.........................2220.50100000000100000000
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------TGTTTTGAGCAGC......................2920.50100000000100000000
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------TGTTTTGATA.........................2620.50100000000100000000
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------TGTTTTA............................2320.50100000000100000000
.........................................................................................................................................................................................................................................................................................GTAAGAATAAC--------------------------TGTTTTGAG..........................2020.50100000000001000000
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------TGTTTTGAGCAAT......................2920.50100000000100000000
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------TGTTTTGAGCTT.......................2820.50100000000100000000
.........................................................................................................................................................................................................................................................................................GTAAGAATAAC--------------------------TGTTT..............................1620.50100000000100000000
........................................................................................................................................................................................................................................................................................TGTAAGAATAAC--------------------------TGTTTTGAG..........................2120.50100000000010000000
....................................................................................................................................................................................................................................................................................TAGATGTAAGAATAAC--------------------------TGTTAAT............................2330.33100000000100000000
................................................................................................................................................................................................................................................................................CATATAGATGTAAGAA.................................................................1630.33100000000001000000
......................................................................................................................................................................................................................................................................................GATGTAAGAATAAC--------------------------TGTTTTGAGCATA......................2730.33100000000001000000
..................................................................................................................................................................................................................................................................................TATAGATGTAAGAAT................................................................1540.25100000000001000000
........................................................................................................................................................................................................................................TTACAATCGGAATTTTCATCATAACTT..............................................................................................2740.25100000010000000000
..................................................................................................................................................................................................................................................................................TATAGATGTAAGAATAAC--------------------------TGTTTTGAA..........................2740.25100000000100000000
...................................................................................................................................................................................................................................................................................ATAGATGTAAGAATAAC--------------------------TGTTTTGAAA.........................2740.25100000000100000000
..........................................................................................................................................................................................................................................................................................TAAGAATAAC--------------------------TGTTTTGAGCATT......................2340.25100000000100000000
.........................................................................................................................................................................................................................................TACAATCGGAATTTTC........................................................................................................1650.20100000001000000000
droSec2
ACATGGTGGCGCAGAAGGCCATCAGGGTGCAACGCATGAC--GCTCAACAAGGTATAACATTCCAAATTCAGGCT-TTTATTT-TCATAGTTATGGCA-AAAAAACTGAT-TACT--TTAT----------------------------------------------------------------GACCGAAATTCGGAAAATCGT-CTTT-TGC--CAAAAA-TTTGATATTTACAATCAGACTTTTCATCATAACTTCGCTAAAAATAGTCATATATATGTAAGAGTAAC--------------------------TGTTTTGAGCAGCTAATTACCAATGCTAACGATCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
GC------------------------------------------TCAACGAGGTATAACATTCCATATTCAGGCT-ATTATTT-TTAAAGTTATGGCC-AAAAAACTGAT-TATT--TGAT----------------------------------------------------------------GACCGAAATTAGGAAAAACGG-ATTT-AGC--CAAAAA-GTTGATATTTACAAACGGAATTTTCGTCATAACTTGGCTAAAAATGCTCATATAGATGTAAGAATAAC--------------------------TGTTTTGAGCAGCTAATTACCAGTGCTAACTATCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................TACAAACGGAATTTTCGTCATAACT...............................................................................................2520167.45334900000000000000000000000000000000000000000000070000163000000000000000000000000000000000000000000000000000000000000040000000000000000000000023000003920014400000034036325700000000000000000000000000000000470000001100000000057800000170000000351000000000000000000000000000000000000000000000000000000000000000000000400151407000000000000000000000000500085000000
...............................................................................................................................................................................................................................................................................TCATATAGATGTAAGAATAAC--------------------------TGTTT..............................2620145.5029100000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700000000000000000000000000000000000000000000000300000000000000000000000000002896000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................TACAAACGGAATTTTCGTCATAACTT..............................................................................................262024.15483000000000000000000000000000000000010600000000000000140000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000052000000080000000327000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000
.....................................................................................................................TGAT----------------------------------------------------------------GACCGAAATTAGGAAAAACGG-A.................................................................................................................................................26616.00960000000000000000000000000000000000000000000000002012100000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000010130060000000000000000000000000000100000000007000000000000000000000101000120402300000000000000000000000000000000000000000000010000000000000000003136115000000222000000000000001100000000
.........................................................................................................................................................................................................................................TACAAACGGAATTTTCGTCATAAC................................................................................................242014.352870000000000000000000000000000000000000000200000000009000000110000000000000000000000000000000000000010000000000000000050000000000000000000067000000100190004180004000000000000000000000000000000000000000003300000000000300000000015000002300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.....................................................................................................................................................................................................................................TATTTACAAACGGAATTTTCGTCA....................................................................................................24200.1020000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TCATATAGATGTAAGAATAAC--------------------------TG.................................23200.1020000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................T--TGAT----------------------------------------------------------------GACCGAAATTAGGAA.........................................................................................................................................................20100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................ATGCTCATATAGATGTAAGAA.................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................GAAAAACGG-ATTT-AGC--CAAAAA-GTT..............................................................................................................................25200.1020000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TAAAAATGCTCATATAGATGTAAGAAA................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................TT--TGAT----------------------------------------------------------------GACCGAAATTAGGAAAAAC.....................................................................................................................................................25100.1010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................AAAAACGG-ATTT-AGC--CAAAAA-GTT..............................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................AACGG-ATTT-AGC--CAAAAA-GTTGA............................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................GGAAAAACGG-ATTT-AGC--CAAAAA-GT...............................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.....................................................................................................................................................................................................GAAAAACGG-ATTT-AGC--CAAAAA-GTTG.............................................................................................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TCATATAGATGTAAGAATAAC--------------------------T..................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................................................................................................................................................................................................................................................AAATGCTCATATAGATGTAAGAAT................................................................24200.1020000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................ACGG-ATTT-AGC--CAAAAA-GTTGATA..........................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................AAAAACTGAT-TATT--TGAT----------------------------------------------------------------GACCGAAA................................................................................................................................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TAAGAATAAC--------------------------TGTTTTGAGCA........................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................TTTACAAACGGAATTTTCGTC.....................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000
............................................................................................................................................................................................................................................AAACGGAATTTTCGTCATAACTTGGCT..........................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................AAAAAACTGAT-TATT--TGAT----------------------------------------------------------------GACC....................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TTT-AGC--CAAAAA-GTTGATATTT.......................................................................................................................22200.1020000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................GAAAAACGG-ATTT-AGC--CAAAAA-GTTGA............................................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TAAAAATGCTCATATAGATGT......................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................ATGTAAGAATAAC--------------------------TGTTTTGAG..........................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TGGCTAAAAATGCTCATATAGATGTAA....................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................AAAAACGG-ATTT-AGC--CAAAAA-GT...............................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................AACGGAATTTTCGTCATAACTTGG............................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ATG-----------------------------------ACGAGCGCAACGAGCTATAACATTCCATATTCAGACA-ATTCTTT-TTAAAGTTATCGAA-AAAAAACGGAT-TATT--TTAT----------------------------------------------------------------GACCGAAATTCGAAAAAACGG-ATTT-TGG--CAAAAATATAAATATTTTTAATGGGAATTTTAATCATAACTTGGCCAAAAATGACCACAGAGATGAAAGAATAAC--------------------------TGTTTTGAGCAGCTAATTACCAATGCTAACGATCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
GC------------------------------------------TCGACGAGGTATGGCATTCCATACTCTGACA-ATTATTT-TTAAAGTTGTGGCA-AAAAAACAGAT-TATT--TTAT----------------------------------------------------------------GCCGGAAATTCAGAAAAACGA-CTTT-TGG--CAAATA-ATCGCTATTTTCTATGGGTATTTTCATCATAACTTCCCTAAAAATGATGCTAAAGATAAAAGAAAAAC--------------------------TTTTTTGAGCAGCTTATTACTTATACTAACCA---SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................AGAT-TATT--TTAT----------------------------------------------------------------GCCGGAAAT...............................................................................................................................................................2111.00100000010000
.......................................................................................................................AT----------------------------------------------------------------GCCGGAAATTCAGAAAAACGA-CT................................................................................................................................................2511.00100000010000
................................................................................................................ATT--TTAT----------------------------------------------------------------GCCGGAAATTCAGAAAAACGA-CT................................................................................................................................................3011.00100000010000
...........................................................ATTCCATACTCTGACA-AT...................................................................................................................................................................................................................................................................................1811.00110000000000
..............................................................................................................................................................................................................................A-ATCGCTATTTTCTATGGGT..............................................................................................................2011.00100000010000
droEug1
GT------------------------------------------TCAACGAGATATTACATTCCATATTCCGACT-ATTTTTG-ACAAAGTTATGGTA-ACAATTCTGAC-ATT---TTTT----------------------------------------------------------------AAGGACAAATCAGGATAACAA-TTTTATGG--CAATATTAACGATATTTTCCCTTGGATTTTAAGCCATAATTTAGCCCAAACAAGACTTAGAGCTAAAAGGAAAAC--------------------------AGTTTTGAGTAGCTAACGACCAATATAAACTACCCSizeHit CountTotal NormTotal
No Reads
droBia1
GCAA-----------------------------------CGAACTCAACGAGGTAAGACATCCCTCGATCTGACG-ATTAGTT-TATTTTTAGCAGCCGAAAAAATTGAA-TTTTAGATTT----------------------------------------------------------------TTCTGAAAAATACAAGATTAATTTTT-ATG--CAAAAA-TTCGATTTTTATTTCCCGTTTTTCTGTCGTAACTCAGCCAAATAAAGGCCTAAAGATACAAGACCGAC--------------------------TGTTTTGAGCAGCTTGCTTCCATTGCTAACGATTCSizeHit CountTotal NormTotal
No Reads
droTak1
GGG--------------------------AATTACATAACGAGTTCAACGAGGTATGACATTCCATATTTGGACC-ATTATTT-CCATTATTATGGAC-AAAATACTGAT-ATT---TTAG----------------------------------------------------------------GGTGGAAAATATGGATTCTAA-TTTC-CGA--CGAAAA--TAACCTTTTCTTTGTGGTTTTTCGGTCGTAATTTGGACAAATCAAGGCTCACAGCTAAAAGAATGAC--------------------------TGTTTTGAGCAGCTAACGACCTAAACTAACGATTCSizeHit CountTotal NormTotal
No Reads
droEle1
ATG-----------------------------------ACGAATTCACCGAGGTATGACATTCCATCTTGTGGCC-ATTACTTCTCAGCGTTTTGATA-TAAAAACTGAA-TTTT----AA---------------------------------------------------------AGTTTTTTTTGGGGTTTCGGAG--------ACT-TGT--CAAAAA-AACAAAAT-CCTAAACAGTCCTTTTGTTGTAACTTGGCCAAAATTAGACGTATAGCCATAAGAGTGAC--------------------------TGTTTTGTAAAGCTGGCGACCTATACTACCCATCCSizeHit CountTotal NormTotal
No Reads
droRho1
GC------------------------------------------TCAACGAGGTATGACATTCCATTTTTGGACC-ATTATTT-GTAATGTTATGGCC-AAAATACTGATATTTT--TTAT----------------------------------------------------------------GGTGAAAATTCAGAATTTCTT-TTTT-TAATGCAAAAA-CACGTTTTTTT---TAAGTGTTTTGGCTGTAATTTGGCCAAAATAAGTCGCAAAACCAAAAGAGTAAC--------------------------TGTTTTATGCAGCTAATGACCACAGCTAACAATCTSizeHit CountTotal NormTotal
No Reads
droFic1
GGG--------------------------AAACCAAAGT--GGCCCAACTAGCTATGCCACCGA--ATGCA----------------ATTTAATTGTT-ATTTAACTGAT-CCTT--TAGT---------------------------------TAGTTCATAAAAACTGATTTGGGAAAGATCAGTTGACAATTCCG---------------GT--AGAAAA-CACTATATTT-TGAGTGGTTTTTTGGTTGTAATAAGGCCAAAAAGTGACTTACAGCGGAACCAAATAC--------------------------TGTTTTGAGCACCTTATGACCACAGTTAACGAGCCSizeHit CountTotal NormTotal
No Reads
droKik1
TTT------------------------------------------TATAGATACAC-------------------------------------TGGGA-AATAAAATGAA-TAGGAAGTATTACTGAAAGCCAGAAAATTGTAATTTTCCTAAT-------------------------------TT---TTATACCC---------------TT--GCAGGG-T------------ATTATAATTTCAGTCAGAAGTTTGCAA------------CGCAGTGAAG--GAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCA--T-----CAACAGGGGAATCSizeHit CountTotal NormTotal
No Reads
droAna3
CAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-AATCATATTTCCAAGCCTTCTCATCATCATATCTCAGCTAATAGAAGTCGGATGCAGAAATG--GCAT--------------------------AGCTTTCCGGATTCAGCATGC-------AGAGTACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TCATGGATGTGATGAACATCTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
ACATGGTGGCCCTGAACAGCTTGAGGAAGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ACATGGTGGCCTTGAACAGCTTGAGGAAGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TC--------------------------------------------CGCGAGGTATAAAATTCTATATTCCGAATTATTATT---------TTTGGCG-AAAAAACTGAT-AATT--TGAT----------------------------------------------------------------GACCGACATTTTGAAAAACGG-ATTT-TGC--CAAAAA-GTTGATATTTACAAACGGAACTTTCGTCATAACTTCGCTAAAAATTGTCTTATAGAAGTAAGAATAAC--------------------------TGTTTTGAGAAACTAATTACCAGCGCTAACGATCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
GCATGACAGCCTTGAACAACTGCCAGAAGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads

Generated: 05/19/2015 at 12:08 AM