ID:

dsi_379

 Coordinate:

2l:19605948-19606009 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.6 -27.2 -27.1

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dsi_379  2l:19605985-19606009 -
  2. 2r:779751-779775 +
  3. node_3296:12520-12544 +
  4. node_8139:2083-2107 -
  5. node_32194:3530-3554 +
star

Sense Strand Reads

GGAAATAGAAACGTTAGATGCAAAATCAATAGCTATTGCTATTGACGATTTCTTAACTAAAGCAGATCTCAATCCTGACAAATGCGTTGGGATTTGATTTGCGTTGGGATTTGATGGCTACTCAACAATGGCTTGAATGGAGGGCGGTGTGCAGGCAATCTT
***********************************..((((((((.....(((((((....(((((((..(((((((((......))))))))).)))))))))))))).)))))))).........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR902008
ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 O001
Testis
 M053
female body
.............................................................................ACAAATGCTTAGGGATTTTAT................................................................ 21 3 4 31.75 127 0 0 50 0 42 0 35 0 0 0 0 0
..................................................TCTTAACTAAAGCAGATCTCAATCC....................................................................................... 25 0 5 29.40 147 67 0 0 32 0 38 0 3 0 7 0 0
......................................................AACTAAAGCAGATCTCAATCCTGA.................................................................................... 24 0 5 15.40 77 0 54 0 0 0 1 0 13 2 0 0 7
..................................................TCTTAACTAAAGCAGATCTCAATCCT...................................................................................... 26 0 5 11.20 56 42 2 0 8 0 2 0 2 0 0 0 0
..................................................TCTTAACTAAAGCAGATCTCAATC........................................................................................ 24 0 5 5.80 29 21 1 0 3 0 3 0 1 0 0 0 0
..................................................TCTTAACTAAAGCAGATCTCAAT......................................................................................... 23 0 5 4.40 22 17 0 0 5 0 0 0 0 0 0 0 0
......................................................AACTAAAGCAGATCTCAATCCTG..................................................................................... 23 0 5 2.00 10 0 0 1 0 0 0 3 0 0 0 6 0
......................................................AACTAAAGCAGATCTCAA.......................................................................................... 18 0 5 1.40 7 0 0 0 0 0 0 0 0 1 0 6 0
..................................................TCTTAACTAAAGCAGATCTCAATCCTGA.................................................................................... 28 0 5 1.20 6 6 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TTTGATTTGCGTTGGGATTTGATGGC............................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
......................................................AACTAAAGCAGATCTCAATCCT...................................................................................... 22 0 5 0.80 4 0 4 0 0 0 0 0 0 0 0 0 0
..........................................TGACGATTTCTTAACTAAAGCAGA................................................................................................ 24 0 6 0.67 4 0 2 0 1 0 0 0 1 0 0 0 0
...............................................................AGATCTCAATCCTGACAAATGCGT........................................................................... 24 0 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0
....................................................TTAACTAAAGCAGATCTCAATCCTGA.................................................................................... 26 0 5 0.40 2 1 0 0 1 0 0 0 0 0 0 0 0
CGAAGTAGGAACGTTAGAT............................................................................................................................................... 19 3 5 0.40 2 0 0 0 0 0 0 0 2 0 0 0 0
......................................................AACTAAAGCAGATCTCAATCCCGACA.................................................................................. 26 1 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................AGATCTCAATCCTGACAAATGCGTT.......................................................................... 25 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................AGCAGATCTCAATCCTGACAAATGCGT........................................................................... 27 0 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0
................................................................GATCTCAATCCTGACAA................................................................................. 17 0 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0
.GAAGTAGGAACGTTAGATC.............................................................................................................................................. 19 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0
......................................................AACTAAAGCAGATCTCAATCCTGACAAA................................................................................ 28 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................AACTAAAGCAGATCTCAATCCCGAC................................................................................... 25 1 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0
.GAAGTAGGAACGTTAGA................................................................................................................................................ 17 2 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0
......................................................AACTAAAGCAGATCTCAATCCTGACAA................................................................................. 27 0 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................ACTAAAGCAGATCTCAATCCTGAC................................................................................... 24 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1
...................................................CTTAACTAAAGCAGATCTCAATCCTGA.................................................................................... 27 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................TCTTAACTAAAGCAGATCTCAATCCCT..................................................................................... 27 2 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0
..AAGTAGGAACGTTAGAT............................................................................................................................................... 17 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................TCTTAACTAAAGCAAATCTCAATCCT...................................................................................... 26 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................TCTTAACTAAATCAGATCTCAATCC....................................................................................... 25 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................TCTTAACTAAAGCAGATCTCAATCAA...................................................................................... 26 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................TGTTAACTAAAGCAGATCTCAATCCT...................................................................................... 26 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................TCTTAACTAAAGCAGATCTCAATCCCGA.................................................................................... 28 1 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0
..................................................TCTTAACTAAAGCAGATCTC............................................................................................ 20 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................TCTTAACTAAAGCAGATCTCAAACC....................................................................................... 25 1 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................TAACTAAAGCAGATCTCAATCCTGA.................................................................................... 25 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................TCTTAACTAAAGCAGATCTCA........................................................................................... 21 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................AACTAAAGCAGATCTCAATCC....................................................................................... 21 0 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0
......................................CTATTGACGATTTCTTAACTAAAGCAGA................................................................................................ 28 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................TTCTTAACTAAAGCAGATCTCAATCCTGA.................................................................................... 29 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................TATTGACGATTTCTTAACTAAAGCAGA................................................................................................ 27 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................TCTTAACTAAAGCAGATCTCATT......................................................................................... 23 1 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0
..................................................GCTTAACTAAAGCAGATCTCAATCC....................................................................................... 25 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................AACTAAAGCAGATCTCAATCCTGT.................................................................................... 24 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................TCTTGACTAAAGCAGATCTCAATCCT...................................................................................... 26 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................TTAACTAAAGCAGATCTCAATCC....................................................................................... 23 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................CACTAAAGCAGATCTCAATCCTGA.................................................................................... 24 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................TCTTAACTAAAGCAGATCTCAATGC....................................................................................... 25 1 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0
......................................................AACTAAAGCAGATCTCAATC........................................................................................ 20 0 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................TCTTAACTAAAGCAGATCTCAATCCC...................................................................................... 26 1 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0
..................................................TCTTAACTAAAGTAGATCTCAA.......................................................................................... 22 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................TCTTAACTAAAGCAGATCTCAA.......................................................................................... 22 0 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0
......................................................AACTAAAGCAGATCTCAATCCTGAAA.................................................................................. 26 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................CCTTAACTAAAGCAGATCTCAATCC....................................................................................... 25 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................TCTTAACTAAAGCAGA................................................................................................ 16 0 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................TGACGATTTCTTAACTAAAGCAGAT............................................................................................... 25 0 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................TTACGATTTCTTAACTAAAGCAGA................................................................................................ 24 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................TTTCTTAACTAAAGCAGA................................................................................................ 18 0 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................TCTTAACTAAAGCAGATCTAAATCCT...................................................................................... 26 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................TCTTAACTAAAGCAGATCTAAATCC....................................................................................... 25 1 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................CCTGACAGATGTGTTGG........................................................................ 17 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CAATGGATTGAAAGTAGGGC................. 20 3 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................AAGCCGATCTCAGTCCCGA.................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

CCTTTATCTTTGCAATCTACGTTTTAGTTATCGATAACGATAACTGCTAAAGAATTGATTTCGTCTAGAGTTAGGACTGTTTACGCAACCCTAAACTAAACGCAACCCTAAACTACCGATGAGTTGTTACCGAACTTACCTCCCGCCACACGTCCGTTAGAA
***********************************..((((((((.....(((((((....(((((((..(((((((((......))))))))).)))))))))))))).)))))))).........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 O001
Testis
 M053
female body
 M025
embryo
 GSM343915
embryo
 M024
male body
....................................ACGATAACTGCTAAAGAATTGATT...................................................................................................... 24 0 4 57.50 230 1 79 0 63 2 37 48 0 0 0 0 0
....................................ACGATAACTGCTAAAGAATTGATTTCGT.................................................................................................. 28 0 4 26.00 104 3 20 39 1 30 5 1 0 1 4 0 0
.......................................ATAACTGCTAAAGAATTGATTTCGT.................................................................................................. 25 0 5 25.80 129 5 8 46 0 53 3 5 7 2 0 0 0
.....................................CGATAACTGCTAAAGAATTGATTTCGT.................................................................................................. 27 0 4 22.25 89 4 9 31 2 14 4 0 6 2 17 0 0
......................................GATAACTGCTAAAGAATTGATTTCGT.................................................................................................. 26 0 5 12.00 60 3 13 23 0 12 7 2 0 0 0 0 0
...................................AACGATAACTGCTAAAGAATTGATT...................................................................................................... 25 0 1 11.00 11 0 4 0 0 0 4 3 0 0 0 0 0
........................................TAACTGCTAAAGAATTGATTTCGT.................................................................................................. 24 0 5 8.20 41 3 8 18 0 9 1 1 0 1 0 0 0
.....................................CGATAACTGCTAAAGAATTGATT...................................................................................................... 23 0 4 7.25 29 0 4 0 17 0 6 2 0 0 0 0 0
.........................................AACTGCTAAAGAATTGATTTCGT.................................................................................................. 23 0 5 5.80 29 2 3 1 0 5 1 3 14 0 0 0 0
..........TGCAATCTACGTTTTAGTTATCGAT............................................................................................................................... 25 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0
.........TTGCAATCTACGTTTTAGTTATCGAT............................................................................................................................... 26 0 1 5.00 5 4 0 0 0 0 0 0 0 1 0 0 0
..................................TAACGATAACTGCTAAAGAATTGATT...................................................................................................... 26 0 1 4.00 4 0 0 0 3 0 1 0 0 0 0 0 0
.............................................................................................................AAACTACCGATGAGTTGT................................... 18 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
......................................GATAACTGCTAAAGAATTGATT...................................................................................................... 22 0 5 2.40 12 0 3 0 1 0 3 5 0 0 0 0 0
.......................................................................TAGGACTGTTTACGCAACCCTAAACTA................................................................ 27 0 1 2.00 2 0 0 0 0 0 0 0 0 0 2 0 0
.........TTGCAATCTACGTTTTAGTTATCGA................................................................................................................................ 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................CGCAACCCTAAACTACCGATGAGTTGTTA................................. 29 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0
........................................................................AGGACTGTTTACGCAACCCTAAACTAA............................................................... 27 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0
...............................................................................................................................TACCGAACTTACCTCCCGCCACACGT......... 26 0 1 2.00 2 1 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................CGCAACCCTAAACTACCGATGAGTTGTT.................................. 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................AGGACTGTTTACGCAACCCT...................................................................... 20 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0
..................................................................................................................ACCGATGAGTTGTTACCGAACTTACCT..................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..............ATCTACGTTTTAGTTATCGAT............................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..........TGCAATCTACGTTTTAGTTAT................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..................................................................AGAGTTAGGACTGTTTACGCAACCCT...................................................................... 26 0 1 2.00 2 1 0 0 0 0 0 0 0 0 1 0 0
...................................................................GAGTTAGGACTGTTTACGCAACCCT...................................................................... 25 0 1 2.00 2 1 0 0 0 0 0 0 0 1 0 0 0
.......................................ATAACTGCTAAAGAATTGATT...................................................................................................... 21 0 5 1.60 8 1 0 0 0 0 0 7 0 0 0 0 0
.............................................GCTAAAGAATTGATTTCGT.................................................................................................. 19 0 6 1.33 8 0 0 0 0 0 0 0 8 0 0 0 0
.......................................................TGATTTCGTCTAGAGTTAGGACTGT.................................................................................. 25 0 3 1.33 4 4 0 0 0 0 0 0 0 0 0 0 0
..........................................................TTTCGTCTAGAGTTAGGACTGTTT................................................................................ 24 0 3 1.33 4 2 0 0 0 1 1 0 0 0 0 0 0
.......................................ATAACTGCTAAAGAATTGATTTCGTCT................................................................................................ 27 0 5 1.20 6 0 1 1 1 0 3 0 0 0 0 0 0
.........TTGCAATCTACGTTTTAG....................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................AAAGAATTGATTTCGTCTAGAGTT.......................................................................................... 24 0 5 1.00 5 0 0 0 1 2 2 0 0 0 0 0 0
..................................................................................................................ACCGATGAGTTGTTA................................. 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................AACTGCTAAAGAATTGATTTCGTCT................................................................................................ 25 0 5 1.00 5 0 0 0 0 2 3 0 0 0 0 0 0
..........TGCAATCTACGTTTTAGTTATCG................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AAACTACCGATGAGTTGTTACCGAA............................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................CTAGAGTTAGGACTGTTTACGCAAC......................................................................... 25 0 3 1.00 3 0 0 0 3 0 0 0 0 0 0 0 0
................................................................CTAGAGTTAGGACTGTTTACGCAACCCT...................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TAGGACTGTTTACGCAACCCTAAACT................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................ACCCTAGACTAATCGCA.......................................................... 17 2 9 1.00 9 0 0 0 9 0 0 0 0 0 0 0 0
...............TCTACGTTTTAGTTAT................................................................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................TAACTGCTAAAGAATTGATTTCGTCT................................................................................................ 26 0 5 1.00 5 0 0 1 0 3 1 0 0 0 0 0 0
.............................................................................................................AAACTACCGATGAGTTGTT.................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ACCGATGAGTTGTTACCGAA............................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................GGCAACCCTAAACTACCGATGAGTTGT................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................TAACGATAACTGCTAAAGAATTGATTT..................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................AACGATAACTGCTAAAGAATTGATTTCGT.................................................................................................. 29 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
...............................CGATAACGATAACTGCTAAAGAATTGATT...................................................................................................... 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................CGCAACCCTAGACTACCGATG......................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................CGCAACCCTAAACTACCGATGAGTTGT................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........TTTGCAATCTACGTTTTAGTTATCGA................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................TGATTTCGTCTAGAGTTAGGACTGTTT................................................................................ 27 0 3 1.00 3 0 0 0 1 0 2 0 0 0 0 0 0
................................................................................................................CTACCGATGAGTTGTTACCGAA............................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........TTGCAATCTACGTTTTAGTTA.................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......CTTTGCAATCTACGTTTTAGTTAT................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................AACCCTAAACTACCGATGAGTTGT................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................AAAACGATAACTGCTAAAGAATTGATT...................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................AACCCTAAACTAAACGCAACCCTAAACT................................................ 28 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
....................................ACGATAACTGCTAAAGAATTGATTT..................................................................................................... 25 0 4 0.75 3 1 1 1 0 0 0 0 0 0 0 0 0
.............................................................CGTCTAGAGTTAGGACTGTTT................................................................................ 21 0 3 0.67 2 0 0 0 2 0 0 0 0 0 0 0 0
.....................................CGATAACTGCTAAAGAATTGATTTCGTCT................................................................................................ 29 0 4 0.50 2 0 0 0 1 0 1 0 0 0 0 0 0
...................................AAGGATAACTGCTAAAGAATTGATT...................................................................................................... 25 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................ACGATAACTGCTAAAGAATTGAT....................................................................................................... 23 0 4 0.50 2 0 1 0 1 0 0 0 0 0 0 0 0
...............................................TAAAGAATTGATTTCGTCTAGAGTT.......................................................................................... 25 0 5 0.40 2 0 0 0 1 1 0 0 0 0 0 0 0
........................................TAACTGCTAAAGAATTGATT...................................................................................................... 20 0 5 0.40 2 0 0 0 0 0 0 2 0 0 0 0 0
.......................................ATAACTGCTAAGGAATTGATTTCGT.................................................................................................. 25 1 5 0.40 2 0 0 1 0 1 0 0 0 0 0 0 0
......................................GATAACTGCTAAAGAATTGATTTCTT.................................................................................................. 26 1 5 0.40 2 0 0 2 0 0 0 0 0 0 0 0 0
.............................................................CGTCTAGAGTTAGGACTGTTTACGC............................................................................ 25 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................CTAGAGTTAGGACTGTTTA............................................................................... 19 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................CTAGAGTTAGGACTGTTTACGCAA.......................................................................... 24 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................AGAGTTAGGACTGTTTACGCAAC......................................................................... 23 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................TCGTCTAGAGTTAGGACTGTTTACGCAA.......................................................................... 28 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................TTTTTTTCTAGAGTTAGGACTGTTT................................................................................ 25 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................ATTCTAGAGTTAGGACTGTTT................................................................................ 21 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................TTCGTCTAGAGTTAGGACTGTTTAC.............................................................................. 25 0 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................AGAGTTAGGACTGTTTACG............................................................................. 19 0 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................TATTTTGTCTAGAGTTAGGACTGTTT................................................................................ 26 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................TAGAGTTAGGACTGTTTACG............................................................................. 20 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................AGTTAGGACTGTTTACGCAACC........................................................................ 22 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................CTGCTAAAGAATTGATTTCGT.................................................................................................. 21 0 6 0.33 2 0 0 0 0 0 0 2 0 0 0 0 0
..............................................CTAAAGAATTGATTTCGT.................................................................................................. 18 0 6 0.33 2 2 0 0 0 0 0 0 0 0 0 0 0
................................................................CTAGAGTTAGGACTGTTT................................................................................ 18 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................TTTCTCTAGAGTTAGGACTGTTT................................................................................ 23 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................TGATTTCGTCTAGGGTTAGGACTGTT................................................................................. 26 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................GAGTTAGGACTGTTTACGCAA.......................................................................... 21 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................GATTTCGTCTAGAGTTAGGACTGTTT................................................................................ 26 0 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................TGATTTCGTCTAGAGTTAGGGCTGTTT................................................................................ 27 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................AGAGTTAGGACTGTTT................................................................................ 16 0 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................................ATAGAGTTAGGACTGTTTACGCAAC......................................................................... 25 1 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................TCGTCTAGAGTTAGGACTGTTTACGC............................................................................ 26 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................ACGCTAACTGCTAAAGAATTGATT...................................................................................................... 24 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................ACGATAACTGCTAAAGAATTGATTTCGTCT................................................................................................ 30 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................ACGACAACTGCTAAAGAATTGATT...................................................................................................... 24 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................ACCATAACTGCTAAAGAATTGATT...................................................................................................... 24 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................CGATAACTGCTAAAGAATTGATTTCTT.................................................................................................. 27 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
........TTTGCAATCTACGTTTTAGTTATCGATT.............................................................................................................................. 28 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................CGATAACTGCTAAAGAATTGATTTCG................................................................................................... 26 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................CGATAACTGCTAAAGAATTGATTT..................................................................................................... 24 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................TCGATAACTGCTAAAGAATTGATT...................................................................................................... 24 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................ACGATAAATGCTAAAGAATTGATT...................................................................................................... 24 1 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0
....................................TCGATAACTGCTAAAGAATTGATTTCGT.................................................................................................. 28 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0
.........TTGCAACCTGCGTTTTAGTTATCGATAA............................................................................................................................. 28 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................CACGATAACTGCTAAAGAATTGATT...................................................................................................... 25 1 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0
....................................ACGATAAGTGCTAAAGAATTGATTTCGT.................................................................................................. 28 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................ACGATAACTGCTAAAGAATTGATTTCGA.................................................................................................. 28 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................AAGGACTGTTTACGCAAC......................................................................... 18 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0
.....................................CGATAACTGCTAAAGAATTGATTTC.................................................................................................... 25 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................ACGATAACAGCTAAAGAATTGATT...................................................................................................... 24 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................AGAATTGATTTCGTCTAGAGTTAGGA...................................................................................... 26 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................GATAACTGCCAAAGAATTGATTTCGT.................................................................................................. 26 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................TAAAGAATTGATTTCGTCTAGAGT........................................................................................... 24 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................ATAACTGCTAAAGAATTGATTTCGTC................................................................................................. 26 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................TGATTTCGTCTAGAGTTA......................................................................................... 18 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................GAATTGATTTCGTCTAGAGTTAGGACT.................................................................................... 27 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................AAAGAATTGATTTCGTCTAGAGTTAGGA...................................................................................... 28 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................AATAACTGCTAAAGAATTGATTTCGT.................................................................................................. 26 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................AAGAATTGATTTCGTCTAGAGTT.......................................................................................... 23 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................AGAATTGATTTCGTCTAGAGTTAGGAC..................................................................................... 27 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................AGAATTGATTTCGTCTAGAGTT.......................................................................................... 22 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................GATAACTGCTAAAGAATTGATTTCGTCT................................................................................................ 28 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................TGATTTCGCCTAGAGTTAGG....................................................................................... 20 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................ATAACTGCTAAAGAATTGATTTCTT.................................................................................................. 25 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................ATAACTGCTAAAGAATTGATTTCGTA................................................................................................. 26 1 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0
.........................................AACTGCTAAAGAATTGATT...................................................................................................... 19 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0
.....................................AGATAACTGCTAAAGAATTGATTTCGT.................................................................................................. 27 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................TAACTGCTAAAGAATTGATTTGGT.................................................................................................. 24 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................GAATTGATTTCGTCTAGAG............................................................................................ 19 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................TAACTGCTAAAGAATTGATTTCGTC................................................................................................. 25 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................ACGATAACTGCTAAATAATTGATTTCGT.................................................................................................. 28 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................AAAGAATTGATTTCGTCTAGAGTTA......................................................................................... 25 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................AAGAATTGATTTCGTCTAGAGTTA......................................................................................... 24 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................TTGTTTTAGTCTAGAGGTAGGA...................................................................................... 22 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0
.......................................ATAACTGCTAAAGAATTGATTGCGT.................................................................................................. 25 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................GATAACTGCTAAAGAATTGATTTCGTC................................................................................................. 27 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................ATAACTGCTAAAGAATT.......................................................................................................... 17 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................AAAGAATTGATTTCGTCTAGAGTTAGGAC..................................................................................... 29 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................GATAACTGCTAAAGAATTGATTT..................................................................................................... 23 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................GGTAACTGCTAAAGAATTGATT...................................................................................................... 22 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
.................TACGTTTTAGTTATCGAT............................................................................................................................... 18 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................TTGATTTCGTCTAGAGTTAGGACT.................................................................................... 24 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................ACTGCTAAAGAATTGATTTCGT.................................................................................................. 22 0 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................CTGCTAAAGAATTGATTTCGTG................................................................................................. 22 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................TAACTGCTAAAGAATTGATTCGT................................................................................................... 23 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................CTGCTAAAGAATTGATTTCGTCT................................................................................................ 23 0 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................CGATAACTTCTAAAGATTTGC........................................................................................................ 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1
.............................................................CGTGTAGTGTTAGGACT.................................................................................... 17 2 15 0.13 2 0 0 0 2 0 0 0 0 0 0 0 0
................................................................CTAGAGTTAAGACTGTTA................................................................................ 18 2 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:19605898-19606059 - dsi_379 GGAAATAGAAACGTTAGATGCAAAATCAATAGCTATTGCTATTGACGATTTCTTAACTAAAGCAGATCTCAATCCTG---ACAAATGCGTTGGGATTTGATTTGCGTTGGGATTTGATGGCTACTCAACAATGGCTTGAATGGAGGGCGGTGTGCAGGCAATCTT
droSec2 scaffold_63:89342-89491 - GGAAATAAAATTGTTGGATGCAAAATCAATAGCTGATGCTATTGACGATTTCTTAACTAAAGCAGATCTCAATCCTG---ACAAATGGTTTGGA------------CTGGGATTTGAAGGCTGCTCAACAATGGCTGGAAAGGAGGGCGGTGTGCATGCAATCTT
dm3 chr3R:394767-394915 - GGAAATAAAAACGTTGGATGCAAAATCAATAGGTAATGCTATTGAAGATTTCTTAAC-AAAGCAGATCTCAATCCTG---ACAAATGCGTTGGA------------CTGGGATTTGATGGCTGCTCAACAATGGCTGGAAAGGAGGGCGGTGTGCAGGCAATCTT
droFic1 scf7180000452349:20358-20458 - TAACCTGAAAGGTCTGGATGCGAAATCTATTGC-------ATCGATGAGTTTCTGACAAAAGAAGACCCTAATCATGCTCAAAAATGCGTTGGT------------TTTGGATTTGACGG---------------------------------------------
droPer2 scaffold_96:57225-57329 + GGCTTTATAGACTTTGAATGCAGAAACTATAGCTGCAAATATTAAATAATAAGTGAATGAAATGGATCTCAATCCTC---ACAAAGGTGTTGGA------------CTAGGTTTTGATGG---------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGAAATAGAAACGTTAGATGCAAAATCAATAGCTATTGCTATTGACGATTTCTTAACTAAAGCAGATCTCAATCCTG---ACAAATGCGTTGGGATTTGATTTGCGTTGGGATTTGATGGCTACTCAACAATGGCTTGAATGGAGGGCGGTGTGCAGGCAATCTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................TCTTAACTAAAGCAGATCTCAATCC..........................................................................................25529.4014700000006733200387000
......................................................AACTAAAGCAGATCTCAATCCTG---A....................................................................................24515.40770007005401302010000
..................................................TCTTAACTAAAGCAGATCTCAATCCT.........................................................................................26511.2056000000242280020000
..................................................TCTTAACTAAAGCAGATCTCAATC...........................................................................................2455.8029000000121130030000
..................................................TCTTAACTAAAGCAGATCTCAAT............................................................................................2354.4022000000017050000000
......................................................AACTAAAGCAGATCTCAATCCTG---.....................................................................................2352.001010306000000000000
......................................................AACTAAAGCAGATCTCAA.............................................................................................1851.40700006000001000000
..................................................TCTTAACTAAAGCAGATCTCAATCCTG---A....................................................................................2851.20600000006000000000
...............................................................................................TTTGATTTGCGTTGGGATTTGATGGC............................................2611.00100000000001000000
......................................................AACTAAAGCAGATCTCAATCCT.........................................................................................2250.80400000040000000000
..........................................TGACGATTTCTTAACTAAAGCAGA...................................................................................................2460.67400000020110000000
...............................................................AGATCTCAATCCTG---ACAAATGCGT...........................................................................2430.67200000002000000000
....................................................TTAACTAAAGCAGATCTCAATCCTG---A....................................................................................2650.40200000001010000000
...............................................................AGATCTCAATCCTG---ACAAATGCGTT..........................................................................2530.33100000001000000000
............................................................AGCAGATCTCAATCCTG---ACAAATGCGT...........................................................................2730.33100000000001000000
................................................................GATCTCAATCCTG---ACAA.................................................................................1730.33100000000001000000
......................................................AACTAAAGCAGATCTCAATCCTG---ACAAA................................................................................2830.33100000010000000000
......................................................AACTAAAGCAGATCTCAATCCTG---ACAA.................................................................................2730.33100000000000010000
.......................................................ACTAAAGCAGATCTCAATCCTG---AC...................................................................................2430.33100010000000000000
...................................................CTTAACTAAAGCAGATCTCAATCCTG---A....................................................................................2750.20100000000010000000
..................................................TCTTAACTAAAGCAGATCTCAATCCCT---.....................................................................................2750.20100000000000001000
..................................................TCTTAACTAAAGCAGATCTCAATCAA.........................................................................................2650.20100000000000010000
..................................................TCTTAACTAAAGCAGATCTC...............................................................................................2050.20100000000000010000
.....................................................TAACTAAAGCAGATCTCAATCCTG---A....................................................................................2550.20100000010000000000
..................................................TCTTAACTAAAGCAGATCTCA..............................................................................................2150.20100000001000000000
......................................................AACTAAAGCAGATCTCAATCC..........................................................................................2150.20100000000001000000
......................................CTATTGACGATTTCTTAACTAAAGCAGA...................................................................................................2850.20100000010000000000
.................................................TTCTTAACTAAAGCAGATCTCAATCCTG---A....................................................................................2950.20100000001000000000
.......................................TATTGACGATTTCTTAACTAAAGCAGA...................................................................................................2750.20100000001000000000
......................................................AACTAAAGCAGATCTCAATCCTG---T....................................................................................2450.20100000010000000000
....................................................TTAACTAAAGCAGATCTCAATCC..........................................................................................2350.20100000000010000000
......................................................AACTAAAGCAGATCTCAATC...........................................................................................2050.20100000000001000000
..................................................TCTTAACTAAAGCAGATCTCAATCCC.........................................................................................2650.20100000000000001000
..................................................TCTTAACTAAAGCAGATCTCAA.............................................................................................2250.20100000000000001000
..................................................TCTTAACTAAAGCAGA...................................................................................................1660.17100000000010000000
..........................................TGACGATTTCTTAACTAAAGCAGAT..................................................................................................2560.17100000000010000000
................................................TTTCTTAACTAAAGCAGA...................................................................................................1860.17100000000001000000
droSec2
GGAAATAAAATTGTTGGATGCAAAATCAATAGCTGATGCTATTGACGATTTCTTAACTAAAGCAGATCTCAATCCTG---ACAAATGGTTTGGA------------CTGGGATTTGAAGGCTGCTCAACAATGGCTGGAAAGGAGGGCGGTGTGCATGCAATCTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................AACTAAAGCAGATCTCAATCCTG---A....................................................................................2471.1488000
.............TTGGATGCAAAATCAATAGCTGATGC..............................................................................................................................2611.0011000
.....TAAAATTGTTGGATGCAAAATCAATAGC....................................................................................................................................2811.0011000
.....................................................................................TGGTTTGGA------------CTGGGATTTGAAGGC............................................2411.0011000
......................................................AACTAAAGCAGATCTCAATCCTG---ACAA.................................................................................2730.6722000
......................................................AACTAAAGCAGATCTCAATCCTG---ACA..................................................................................2630.6722000
..........................................................................................................................GCTCAACAATGGCTGGAAA........................1930.3311000
......................................................AACTAAAGCAGATCTCAATCCTG---ACATT................................................................................2830.3311000
........................................................................................................................CTGCTCAACAATGGCTGGAAA........................2130.3310010
.........................................................................................................................TGCTCAACAATGGCTGGAAAGGAGG...................2530.3311000
......................................................AACTAAAGCAGATCTCAATCCTG---AC...................................................................................2530.3311000
......................................................AACTAAAGCAGATCTCAATCCTG---.....................................................................................2370.2922000
....................................TGCTATTGACGATTTCTTAACTAAAGC......................................................................................................2750.2011000
dm3
GGAAATAAAAACGTTGGATGCAAAATCAATAGGTAATGCTATTGAAGATTTCTTAAC-AAAGCAGATCTCAATCCTG---ACAAATGCGTTGGA------------CTGGGATTTGATGGCTGCTCAACAATGGCTGGAAAGGAGGGCGGTGTGCAGGCAATCTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................TGCGTTGGA------------CTGGGATTTGATGGC............................................2425.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000
.....................................................................................TGCGTTGGA------------CTGGGATTTGATGGCT...........................................2522.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000
........................................................................TCCTG---ACAAATGCGTTGGA------------CTGGGA.....................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
................................GTAATGCTATTGAAGATTTCTTAAC-A..........................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.......AAAACGTTGGATGCAAAATCA.........................................................................................................................................2121.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000001000000000000000000000
...AATAAAAACGTTGGATGCAAAAT...........................................................................................................................................2321.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TTGAAGATTTCTTAAC-AAAGCAGA...................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................CAATGGCTGGAAAGGAG....................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................CTCAACAATGGCTGGAAAGGAGGGCG................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TTGAAGATTTCTTAAC-AAAGC......................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................................................................CAAATGCGTTGGA------------CTGGGATTTGATGGC............................................2821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000
..................................................TCTTAAC-AAAGCAGATCTCAATCC..........................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........CGTTGGATGCAAAATCAATAGGTAA.................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TGGCTGGAAAGGAGGGCGGTG.............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................CAAATGCGTTGGA------------CTGGGATTTGATG..............................................2621.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000
...............................................................................................................ATTTGATGGCTGCTCAACA...................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................GAGGGCGGTGTGCAGGCAATC..2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................................TGCGTTGGA------------CTGGGATTTGAT...............................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
......................................................................AATCCTG---ACAAATGCGTTGGA------------...........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................GATGGCTGCTCAACAATGGCT.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................TTGATGGCTGCTCAACAATGG...............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TGCGTTGGA------------CTGGGATTTGATGG.............................................2321.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000
................................................................................................................TTTGATGGCTGCTCAACAATGGC..............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................AAC-AAAGCAGATCTCAATCCT.........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
....................................................................................................................ATGGCTGCTCAACAATGGCT.............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TCAACAATGGCTGGAAAGGAGT...................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................CTCAACAATGGCTGGAAAGGAGGGCGG...............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................TGGCTGCTCAACAATGGCTGGAAAGG......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................AATGCGTTGGA------------CTGGGATTTGATGGC............................................2621.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...AATAAAAACGTTGGATGCAAAATC..........................................................................................................................................2421.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................AAC-AAAGCAGATCTCAATCCTG---ACA..................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TAATGCTATTGAAGATTTCTTAAC-AAA........................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................CAACAATGGCTGGAAAGGAGG...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TATTGAAGATTTCTTAAC-AAAGCAGA...................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................CTCAACAATGGCTGGAAAGGAGGGC.................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................TCAACAATGGCTGGAAAGGAGGGCGG...............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................CTGGGATTTGATGGCTGCTCA......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................ATTGAAGATTTCTTAAC-AAAGCAGA...................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TATTGAAGATTTCTTAAC-AAAGCAGAATC................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................CAATGGCTGGAAAGGAGGGCGGTGT............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................GTTGGA------------CTGGGATTTGATGGC............................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.................................................................................CAAATGCGTTGGA------------CTGGGATTTGATGG.............................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...........................................................................TG---ACAAATGCGTTGGA------------CTGGG......................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....TAAAAACGTTGGATGCAAAATC..........................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................CAAATGCGTTGGA------------CTGGGATT...................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...AATAAAAACGTTGGATGCAA..............................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................TTGGA------------CTGGGATTTGATGG.............................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.............................................................................................A------------CTGGGATTTGATGGCTGCTC.......................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TAAAAACGTTGGATGCAAAATCAA........................................................................................................................................2420.5010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................CGTTGGA------------CTGGGATTTGATGG.............................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AAAACGTTGGATGCAAAATC..........................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....TAAAAACGTTGGATGCAAAAT...........................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................ATGCGTTGGA------------CTGGGATTTGA................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................AATGCGTTGGA------------CTGGGATTTGAT...............................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................GTTGGA------------CTGGGATTTGAT...............................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
droFic1
TAACCTGAAAGGTCTGGATGCGAAATCTATTGC-------ATCGATGAGTTTCTGACAAAAGAAGACCCTAATCATGCTCAAAAATGCGTTGGT------------TTTGGATTTGACGG---------------------------------------------SizeHit CountTotal NormTotal
No Reads
droPer2
GGCTTTATAGACTTTGAATGCAGAAACTATAGCTGCAAATATTAAATAATAAGTGAATGAAATGGATCTCAATCCTC---ACAAAGGTGTTGGA------------CTAGGTTTTGATGG---------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads

Generated: 05/15/2015 at 04:19 PM