ID:

dsi_3778

 Coordinate:

3r:4128193-4128456 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCAATCGTCACATCTGCCGGGACGACGTCACCTATTGGCGCTGCAGCCAGGTAATTGGCTAAAACTATACATTCGAATAAAACGTTTTAGTCGTATTAGTATTTTGTTTTAAATTCTGCCAAAAATATTGAGAAAATATAACTAACCTAGTTACTGCTTAATCTTAGTCGAGAGAAAGATAAGTAGAGCCTACTTTTCTGAGTTAAAGACAGTTCTAATTAATTGTTAGTTATTTTGTAAAGTTAATTGCATTCCTTTCACAATATATGCCAAATCTACACCAGTTAATGTATTTATTGTGGATCTCCTTTTAGTTCGCAGTGTTGCGATGTCGTGCGCGGCTCAAGACCAAATTGGATACACT
**************************************************....(((((((((((.((((...(((.((((....)))).))).....))))...))))))......))))).......((((....(((((((((.((((((((((((...(((((.............((((((...))))))..)))))...))).))))...)))))...)))))))))..(((((......))))).....(((((((((.((((.....((.....)).....)))).))))))))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR902008
ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M025
embryo
 M023
head
.......TCACATCTGCCGGGACGACGTCACC............................................................................................................................................................................................................................................................................................................................................ 25 0 1 2.00 2 0 1 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................TGCGCGGCTCAAGACCAAATTGGA...... 24 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................TGCGATGTCGTGCGCGGCTC.................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................TGTTGCGATGTCGTGCGCGGCTCAA.................. 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................TTTGCAGTGTTGCGATGTCGTGCGC......................... 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................TCTACACCTGTTAATGT......................................................................... 17 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................................................................................................TTTACTGTTGGTCTCCTTTTA................................................... 21 3 7 0.29 2 0 2 0 0 0 0 0 0 0 0 0
...................................................................................................TATATTGTTTTGAATTCTGCTAAA................................................................................................................................................................................................................................................. 24 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................ATCTTCGTCGAGAGA............................................................................................................................................................................................. 15 1 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0
...............GCGGGGACGACGTCA.............................................................................................................................................................................................................................................................................................................................................. 15 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................TGTATGTATTGTGGAACACC........................................................ 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0
..............TACCTGGACGACGTCACC............................................................................................................................................................................................................................................................................................................................................ 18 2 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GTAGAGCCTGCTTTGATGAG.................................................................................................................................................................. 20 3 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0
...............GCGGGGACGACGTCAA............................................................................................................................................................................................................................................................................................................................................. 16 2 20 0.10 2 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................TTCCTTTCACAATAGA................................................................................................. 16 1 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................GTGTAGCTCCTTTTAGT................................................. 17 2 12 0.08 1 0 0 0 0 0 0 0 1 0 0 0
.........................................TGCAGCCGGGTAATTGGGGA............................................................................................................................................................................................................................................................................................................... 20 3 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TAATCTCCGTCGAGAGATA........................................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................................................................................GTGCGATGTCGTGTGCAGC...................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................................................................................................TTTAGTACGCAGTGCTGCT.................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................................ATCTCAGTCGTGAGACAG.......................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

AGTTAGCAGTGTAGACGGCCCTGCTGCAGTGGATAACCGCGACGTCGGTCCATTAACCGATTTTGATATGTAAGCTTATTTTGCAAAATCAGCATAATCATAAAACAAAATTTAAGACGGTTTTTATAACTCTTTTATATTGATTGGATCAATGACGAATTAGAATCAGCTCTCTTTCTATTCATCTCGGATGAAAAGACTCAATTTCTGTCAAGATTAATTAACAATCAATAAAACATTTCAATTAACGTAAGGAAAGTGTTATATACGGTTTAGATGTGGTCAATTACATAAATAACACCTAGAGGAAAATCAAGCGTCACAACGCTACAGCACGCGCCGAGTTCTGGTTTAACCTATGTGA
**************************************************....(((((((((((.((((...(((.((((....)))).))).....))))...))))))......))))).......((((....(((((((((.((((((((((((...(((((.............((((((...))))))..)))))...))).))))...)))))...)))))))))..(((((......))))).....(((((((((.((((.....((.....)).....)))).))))))))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
..........................CAGTGGATAACCGCGACG................................................................................................................................................................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATTAATTAACAATCAATAAAA................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................AAAAATTTCAGTTAACGTA................................................................................................................ 19 2 18 0.50 9 0 0 2 5 0 1 0 0 1
..................................................................................................................................................................................................................................................................................................AGAAATAACACCTAGAG......................................................... 17 1 2 0.50 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................TTTTGATGTCGTCAATTAC.......................................................................... 19 2 5 0.20 1 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................TCAAGATTAACTAGCAATTAA..................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................GTAAGGAAGGTGTTGTAGAC............................................................................................... 20 3 6 0.17 1 0 0 1 0 0 0 0 0 0
....AGCAGTGTAGACCCCCCGG..................................................................................................................................................................................................................................................................................................................................................... 19 3 6 0.17 1 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................................................................AGGAAAGTGTTGTATA................................................................................................ 16 1 6 0.17 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................AAAAAATTTCAGTTAACGTA................................................................................................................ 20 2 7 0.14 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................CAAGTTCTGTCAAGA.................................................................................................................................................... 15 1 8 0.13 1 1 0 0 0 0 0 0 0 0
......................................................................................................AAAAAAAATTTAAGACGTTTT................................................................................................................................................................................................................................................. 21 2 11 0.09 1 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................................................................................................................................................................CGCCGAGTTATGGTT............ 15 1 12 0.08 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TCAAGATTAACTAGCAATTA...................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 1 0 0 0 0

Generated: 04/23/2015 at 08:40 PM