ID:

dsi_3705

 Coordinate:

3r:4721371-4721645 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3r_4720841_4721370_+]; CDS [3r_4720841_4721370_+]; CDS [3r_4721646_4721763_+]; exon [3r_4721646_4721763_+]; intron [3r_4721371_4721645_+]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCGGTGCCCTTCTTTGGCTGGGACAGCCTGAAAGTCAAGCTGGAATTCAAGTAAGTTAAGGGGATAATGTGGTATAGGGGTTGGGTTGAGATCGAGCGACTTGTTGGGCCGGTCCGTTGCGTGCCGCCGTCGCGGGCCGCTCAAACCCTTTTTTCGGAAACAGTCCCACTTTCAATTCCTATCCCAGTTTCATTCACATGCAAATGCGCTGGGTTTGATTGTCTAATTTTGGAGTGTTGACAAGACCTAACTTCTGACTTGTGACTTCTGGCATTGTGATGCAAATAGAAGCAATTAAACTCACTAATTTGTTTGCTCTGCGCAGGGGTGTGGTAGCTGTCTCCATGGACATGCTGCAGCTGGACATCAACCAGT
**************************************************....((..((.((((((..((((.(((((((((((((.....((((...))))((((((.(((((((.(((......))).))))))))))))).((........)).((((.(((......(((((.....((((((..((((........)))).))))))...))))).........))).)))).....))))))))))))).....((.((((((((((....))))...)))))))).........))))..)))))).))..))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 M023
head
..............................................................................................................................................................................................................................................................................................................................TGGACAAGGGTGTGGTAGCTGTCT................................. 24 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................ACAGTCCGACGATCAATTCCTA.................................................................................................................................................................................................. 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................CTCCATGGACATGCTGCAGCTGGA........... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........TCTTCGGCTGGGACAGC............................................................................................................................................................................................................................................................................................................................................................ 17 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.............................................TTCAAGTAAGTTAAGGG......................................................................................................................................................................................................................................................................................................................... 17 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................CATGGACATGCTGCAGCT.............. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................CCGAGGCGTGCCGCCGTCGC.................................................................................................................................................................................................................................................. 20 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................GCTTGTTGGGCCGGT...................................................................................................................................................................................................................................................................... 15 1 8 0.13 1 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................GTTTCGTTCACATGCGGATG......................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................CCGTCGCGGTCCGCTGA........................................................................................................................................................................................................................................ 17 2 11 0.09 1 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................AAACAGTCCGACGTTCA......................................................................................................................................................................................................... 17 2 13 0.08 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GCCTTTTCTCGGAAACA..................................................................................................................................................................................................................... 17 2 17 0.06 1 0 0 0 0 0 0 1 0 0 0
.........................................................AAGGTGATAATTTTGTATAG.......................................................................................................................................................................................................................................................................................................... 20 3 18 0.06 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................TTTCATTCACTTGCAA............................................................................................................................................................................ 16 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................................................................................................................GTAGGTGCCTACATGGAC......................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CGCCACGGGAAGAAACCGACCCTGTCGGACTTTCAGTTCGACCTTAAGTTCATTCAATTCCCCTATTACACCATATCCCCAACCCAACTCTAGCTCGCTGAACAACCCGGCCAGGCAACGCACGGCGGCAGCGCCCGGCGAGTTTGGGAAAAAAGCCTTTGTCAGGGTGAAAGTTAAGGATAGGGTCAAAGTAAGTGTACGTTTACGCGACCCAAACTAACAGATTAAAACCTCACAACTGTTCTGGATTGAAGACTGAACACTGAAGACCGTAACACTACGTTTATCTTCGTTAATTTGAGTGATTAAACAAACGAGACGCGTCCCCACACCATCGACAGAGGTACCTGTACGACGTCGACCTGTAGTTGGTCA
**************************************************....((..((.((((((..((((.(((((((((((((.....((((...))))((((((.(((((((.(((......))).))))))))))))).((........)).((((.(((......(((((.....((((((..((((........)))).))))))...))))).........))).)))).....))))))))))))).....((.((((((((((....))))...)))))))).........))))..)))))).))..))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
..............................................................................................................................................................TGGTCAGGTTGCAAGTTAAGGA................................................................................................................................................................................................... 22 3 1 2.00 2 2 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................ACGAGGTTGACCTGTAGTTGAT.. 22 3 2 0.50 1 0 1 0 0 0
......................................................................................................................................................................................................................................................................................................AATTTGAGAGATTAAACAAG............................................................. 20 2 2 0.50 1 0 0 1 0 0
....................................................................................................................................................................................................................................................TGGATGGAAGACTGAGCAT................................................................................................................ 19 3 5 0.20 1 1 0 0 0 0
.......................................................................................................AACCCCGCCAGGCAA................................................................................................................................................................................................................................................................. 15 1 7 0.14 1 0 0 0 1 0
..................................................................................................................................................................................................GGGTACGTTCACGCGATCC.................................................................................................................................................................. 19 3 11 0.09 1 0 0 0 0 1
.........................................................................................................CCGGGCCAGGCAGCGC.............................................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 1 0
............................................................................................................................................AGTTTGGGAACACAGC........................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1

Generated: 04/24/2015 at 10:25 AM