ID:dsi_3680 |
Coordinate:3l:11692246-11692395 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -4.6 | -4.5 | -4.3 |
 |
 |
 |
three_prime_UTR [3l_11691968_11692305_-]; CDS [3l_11692306_11693041_-]; exon [3l_11691968_11693041_-]
No Repeatable elements found
| ########################################################################################################################################################################################################################################################## GCACTGGCAACACCAACTCCTCCGAGCAGCTCACCTCGAGCGCCTACATGGTTACACCTCCCAATACGCCCGGCTTGGCCAAGAGCGATGCCGCATCGCTGTCCAATCGCCATGCGTCTATTTGGAATAGCTTCGGATAATTAGACTGCTCGAACGATGGTGTTGCCGTGCACTTGCCACTGCTAACGTAACTTGCCTCCGCCCATCATAATCATTATTCCTTAGGTTTAAGGTATTTCATGGTTGTCAC *******************************************************************************************************************************************..................(((((.(((...)))..)))))..********************************************************************* |
Read size | # Mismatch | Hit Count | Total Norm | Total | O001 Testis |
SRR618934 dsim w501 ovaries |
SRR553488 RT_0-2 hours eggs |
M024 male body |
SRR553486 Makindu_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................................TTGCCGTGCACTTGCCACT..................................................................... | 19 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 |
| .................................................................................................................................................................GTTGCCGTGCACTTGCCACT..................................................................... | 20 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................ATTAGACTGCTCGAACG.............................................................................................. | 17 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 |
| ..............................................................................CCAAGAGCGATGCCGCT........................................................................................................................................................... | 17 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 |
| ...............................................................................................................................................................................................................................AGGTTTAAGGTATTTCATGGTTGTCAC | 27 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 |
| .......................GAGCAGATCACCTCGCGCG................................................................................................................................................................................................................ | 19 | 2 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 |
| ..............................................................................CCAAGAGCGATGCCG............................................................................................................................................................. | 15 | 0 | 7 | 0.29 | 2 | 0 | 2 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................................TATTCCCTCTGTTTAAGGTA............... | 20 | 3 | 4 | 0.25 | 1 | 0 | 0 | 1 | 0 | 0 |
| ..............................................................................................................................................AGACTGATCGAAAGATG........................................................................................... | 17 | 2 | 11 | 0.09 | 1 | 0 | 0 | 1 | 0 | 0 |
| ..............................................................................CCAAGAGCAATGCCG............................................................................................................................................................. | 15 | 1 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 |
| ..............................................................................CCAAGAGCGATGCCGTT........................................................................................................................................................... | 17 | 2 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 |
|
CGTGACCGTTGTGGTTGAGGAGGCTCGTCGAGTGGAGCTCGCGGATGTACCAATGTGGAGGGTTATGCGGGCCGAACCGGTTCTCGCTACGGCGTAGCGACAGGTTAGCGGTACGCAGATAAACCTTATCGAAGCCTATTAATCTGACGAGCTTGCTACCACAACGGCACGTGAACGGTGACGATTGCATTGAACGGAGGCGGGTAGTATTAGTAATAAGGAATCCAAATTCCATAAAGTACCAACAGTG
*********************************************************************..................(((((.(((...)))..)))))..******************************************************************************************************************************************* |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553487 NRT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
SRR553486 Makindu_3 day-old ovaries |
GSM343915 embryo |
SRR553488 RT_0-2 hours eggs |
M023 head |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................................................................................................................................................CAGGTAGAATTAGTAATGAGG............................. | 21 | 3 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................AGCCTATTAATCTGTC...................................................................................................... | 16 | 1 | 3 | 0.33 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .............................................................................AGGTTCTCGCTACGGC............................................................................................................................................................. | 16 | 1 | 9 | 0.22 | 2 | 0 | 2 | 0 | 0 | 0 | 0 |
| ............................................ATGTACTAATGTGGAGCGG........................................................................................................................................................................................... | 19 | 3 | 8 | 0.13 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| .....................................................................................................................................................................................................AGGCGGGTAGTAGTAG..................................... | 16 | 1 | 10 | 0.10 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| .....................GGGTCGTCGTTTGGAGCTC.................................................................................................................................................................................................................. | 19 | 3 | 17 | 0.06 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| .........................................CGGATGTACGAATTTGGC............................................................................................................................................................................................... | 18 | 3 | 18 | 0.06 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| ................................................................ATGCGGGCCGTATTGGTTC....................................................................................................................................................................... | 19 | 3 | 19 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
Generated: 04/24/2015 at 10:35 AM