ID:

dsi_3667

 Coordinate:

3l:138855-139004 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [3l_138585_138854_+]; CDS [3l_138585_138854_+]; intron [3l_138855_142141_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGTCGGCGTCTCGCGTCTCGAGGAGATCGTGGCACGCCTCGCCGACAAAGGTATGTTGCTCGTCCTCATACGTCCTCATGACTTATCCATTTAACGCTCCGTTAGCCTTTTTGATGGAAAGCAATCGGGAGGAAGTGCATCTTAATTGATTTCGTTTCTTTGCAAATTTTACGTCCTCTTGCGGCTACTGAATTATGTTATTTGTCAGGAAAGTAAAAGAAAGTAATTTCTCGTCTCCTGCGGCTCCATC
********************************************************************************************************************....((((..((((.(((((.((.......))))))).)))).))))...************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
....................................................................................................................GAAAGCAATCGGGAGGAAGTGC................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0
.GTCGGCGTCTCGCGTCTCGAGG................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................ATTTGTCAGGAAAGTAAAAGA.............................. 21 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................TTTCGTTTCTTTGCAAA.................................................................................... 17 0 1 1.00 1 0 0 1 0 0 0 0
...............TCTCGAGGAGATCGTGGCACGCCTCGCC............................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0
.....................GGAGATCGTGGCACGCCTCGCC............................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................................TCCTCTTGCGGCTACTGAATTATGT.................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0
................................................................................................CTCCGATAGCCTTATTGA........................................................................................................................................ 18 2 3 0.33 1 0 1 0 0 0 0 0
..................................................................................................................................................................CAAATTTTACGTCGTC........................................................................ 16 1 4 0.25 1 0 0 0 1 0 0 0
...............................................................................................................TGATGGAAAGTGCTCGGGAG....................................................................................................................... 20 3 7 0.14 1 0 0 0 0 1 0 0
.................................................................................................TCTGATAGGCTTTTTGATGG..................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 1
..........................................................................................................................................................................................................TGTCAGAAAAGTAAAA................................ 16 1 12 0.08 1 0 0 0 0 0 1 0
...............................................................................TACTTATCCATTTCACG.......................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 1 0

Anti-sense strand reads

TCAGCCGCAGAGCGCAGAGCTCCTCTAGCACCGTGCGGAGCGGCTGTTTCCATACAACGAGCAGGAGTATGCAGGAGTACTGAATAGGTAAATTGCGAGGCAATCGGAAAAACTACCTTTCGTTAGCCCTCCTTCACGTAGAATTAACTAAAGCAAAGAAACGTTTAAAATGCAGGAGAACGCCGATGACTTAATACAATAAACAGTCCTTTCATTTTCTTTCATTAAAGAGCAGAGGACGCCGAGGTAG
************************************************************************************....((((..((((.(((((.((.......))))))).)))).))))...******************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.............................TCCGTGCGTAGCGGCTGTCT......................................................................................................................................................................................................... 20 3 1 5.00 5 4 1 0 0 0
..............................CCGTGCGTAGCGGCTGTCTTC....................................................................................................................................................................................................... 21 3 1 2.00 2 0 2 0 0 0
...............................................................................................................................................................................................................CCTTTCATTTTCTTTCAT......................... 18 0 1 1.00 1 0 0 1 0 0
.........................................................................................................................................................................ATGCAGGAGAACGCT.................................................................. 15 1 2 0.50 1 0 0 0 1 0
.............................TCCGTGCGTAGCGGCTGTC.......................................................................................................................................................................................................... 19 3 15 0.47 7 4 3 0 0 0
..............................CCGTGCGTAGCGGCTGTCTT........................................................................................................................................................................................................ 20 3 5 0.40 2 2 0 0 0 0
..........................................................................................................................................TAGAGTTAACTAAAGAAAAG............................................................................................ 20 2 9 0.11 1 0 0 0 1 0
.................................................................................GAATGGGTAAATTGC.......................................................................................................................................................... 15 1 12 0.08 1 0 0 0 0 1
...........................................................................................................................................AGAGTTAACTAAAGAAAAG............................................................................................ 19 2 19 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:138805-139054 + dsi_3667 AGT------C---------GGCG-T-----CTCGCGTCTCGAGGAGATCGTGGCACGCCTCGCCGACAAAGGTATGTTG----------------------------------------------CTCGTC-CTCATA--------CGT---------CCTCATGACTTATCC------------ATTTAACGCTCCGTTAGCCTTTTT--------------------GA--TGGAAAGCAA--------------------------------------------------------TC-GGGAGGAA-----------------GTGCATCTTAATTGATTTCGTTTCTT--------TG---CAAA-TTTTACGT--------CCTCT---------------------TGCG-----------------------GCTAC---------------TGAATTATGTTATTTG--TC-AGGAAAGTAAAAGAAAGTAATTTCT-CGTCTCCTGCGGCT--------------------------------------------CCATC
droSec2 scaffold_2:186657-186906 + AGT------C---------GGCG-T-----CTCGCGTCTCGAGGAGATCGTGGCACGCCTCGCCGACAAAGGTATGTTG----------------------------------------------CTCGTC-CTCATA--------CGT---------CCTCATGACTTATCC------------ATTTACCGCTCCGTTAGCCTTTTT--------------------GA--TGGAAAGCAA--------------------------------------------------------TC-GGGAGGAA-----------------GTGCATCTTAATTGATTTCGTTTCAT--------TG---CAAA-TTTTACGT--------CCTCT---------------------TGCG-----------------------GCTAC---------------TGAATTATGTTATTTG--TC-AGGAAAGTAAATGAAAGTAATTTCT-CGGCTCCTGCGGCT--------------------------------------------CCATC
dm3 chr3L:168801-169039 + AGT------C---------GGTG-T-----CTCGTGTCTCGAGGAGATCGTGGCACGCCTCGCCGACAAAGGTATGTTT----------------------------------------------CTCGTC-CT--------------------CATACCGAATGACTCGTCC------------ATTTACCGCTCCGTTAGACTTTTT--------------------GA--TGGAAA------------------------GCAGG--------CA--------------------GTC-GAGAGGAA-----------------ATGCATCTTAATTGATTTCGTTTCCT--------TG---CAAA-TTTTACGT--------CCTCT---------------------TGC--------------------------------------------TTAATTATGATATTTG--TC-AGGAAAGTAAAAGAAAGTAATTTCT-CAGCTCCTGCGGC--------------------------------------------------
droEre2 scaffold_4784:152988-153280 + AGT------C---------GACG-T-----CTCGCGGCTCGAGGAGATCGTGGCACGCCTCGCCGACAAAGGTATGTTG----------------------------------------------CTCGTC-CT--------------------CATACCGGATGACTTGTCAAT----TTCCCAATTTTCCGCTCCGTTAGCCTTTTT--------------------GA--TGGGAA------------------------GCAGG--------CA--------------------GTC-GGGAGGAA-----------------GTGCATCTTGATTGATTTCGTTTTTT--------TG---CAAA-TTGTACAT--------CCTCT---------------------TGCG-----------------------GCTAC---------------TGAATTATGATATTTG--TC-AGGAAAGTGAAAGAAAGTAATTTCT-CGGCTCCTGCAACTCGA-------TCCGTCGCTCCATCAGTTCG---CTCAGGGGGGACCATC
droYak3 3L:144555-144864 + AGT------C---------GACG-T-----CTCGCGGCTCGAGGAGATCGTGGCACGCCTCGCCGACAAAGGTATGTTG----------------------------------------------CTCGTC-CT--------------------CATACCGGATGACTTGTCAAT----TCCCCAATTTTCCGCTCCGTTAGCCTTTTT--------------------GA--TGGAAAGCAAA---CAGTAGGCAGCAGGCA----G--------CA--------------------GTC-GGGAGGAA-----------------GTGGATCTTAATTGATTTCGTTTCTT--------TG---CAAA-TTGTACAT--------CCTCT---------------------TGCG-----------------------GCTAC---------------TGAATTATGATATTTG--TC-TGGAAAGTGAAAGAAAGTAATTTCT-CGGCTCCTGCGGCTCGA-------TCCGTAGCTCCATCAATTCG---CTCTGAGGGGTCCATC
droEug1 scf7180000409184:168640-168931 - AGT------CAA---CGACGGCG-T-----TGCGGGGCACGAGAAGATCGTGGCACGTCTCGCCGAACAAGGTAGGTTG----------------------------------------------CACATC-CT--------------------CGTCCCGGATGACTTGTCAAT----TTCTTAATTTTCCGCTCCGTCTGTCTTTCC--------------------AA--CGGGGA------------------------GCAGA--------GA--------------------TCT-TGGAGGAA-----------------GTGCATCTTAATTGATTTTGTTTCTT--------GG---CCAA-TTTTAAAT--------CCTCT---------------------TGCG-----------------------GCTAC---------------TGAATTATGATGTTTGCCTC-GGGAAAGTGAAAGAAAGTAATTTTT-TGGCTC---------GG-------TCGGCCTCTCCATCTTTACG---CTCTGAGGGGTCCATC
droBia1 scf7180000300910:182723-183029 - AGG------CCA---CGTCGGCG-T-----CCCGCGGCACGAGGAGATCGTGGCACGTCTCGCCGAACAAGGTAGGTGG----------------------------------------------CTCGTC-CT--------------------CGT-CCGGATGACTTGTCGAT----TTCTTAATTTTCCGCTTCGTCTGGCTTTGC--------------------AAAC-----------------CGGGGAACAGCGAACAGG--------GA--------------------TTC-GGGAGGAA-----------------GTGCACCTTAATTGATTTCGTTTCTT--------GG---CCAA-TTTTACAT--------CCTCT---------------------TGCT-----------------------GCTAC---------------TGAATTATGATATTCG--TT-GGGAAAGTGAAAGAAAGTAATTTCT-CGCCTCCTGCGGCTTGC-------TCCGTCGCTCCATCATTACG---CTCCGAAGAGTCCATC
droTak1 scf7180000413899:77349-77654 - AG----------------------------------GCACGAGAAGATCGTGGCACGTCTCACCGAACAAGGTAGGTTG------------------------------AGTGCTGGTGCTCCAGCTCGTC-CT--------------------CGTCCCGGATGACTTGTCAAT----TTCTTAATTTTACGCTCCGTCTGCCTTTTG--------------------AA-------A------------------------ACAGG--------GA--------------------TTC-GGGAGGAA-----------------GTGCATCTTAATTGATTTCGTTTCTT--------GG---CCACTTTTTGCAT--------CCCCT---------------------TGCGT-------------------TTGGCTAC---------------TGAATTATGATATTTG--TC-GGGAAAGTGAAAGAAAGTCATTTCT-CGGCTCCTGCGGTTCGTTTTTCGGTCCGTCGCTCCATCATTACGCTGCTCTGAGGGGTCCATC
droEle1 scf7180000491249:191146-191466 - GAACGGATTCAT---CGTCGGCC-T-----GCCGCAGCACGAGAAGATCTTGGCACGTCTCGCCGAACAAGGTAAGCTG----------------------------------------------CTCGTT-CTCGTACTCGTCCTCGTCCT--CGTCCCGGATGACTTGTCAAT----TTCTTAATTTTCCGCTCCGACTGCCTCTGC--------------------AA--------GTAAGGTGGAGCAGTCAGCAGGGAGCAGG--------GA--------------------TTC-GGGAGGAA-----------------GTGCATTTTAGTTGATTCCGTTTCTT--------GG---CCAA-TTTTACAT--------CCTCT---------------------TGCG-----------------------GCTAC---------------TGAATTATGTTATTTG--TC-GGGAAAGTGAAAGAAAGTAATTTCT-CGGCTCCTGCGGTTCGATTT--GGT---TCGT-------------------------TTCGTC
droRho1 scf7180000762853:77735-78033 - AGT------CAT---CGTCGGCG-T-----CCCGCGGCACGAGAAGATCTTGGCACGTCTCGCCGAACAAGGTAAGCTC----------------------------------------------CTCGTC-CT--------------------CGTCCCGGGTGACTTGTCAAT----TTCTCAATTTTCCGCTCCGTCTGCATTTGC--------------------AA--CGGGGA------------------------GCAGG--------GA--------------------TTA-GGGAGGAA-----------------GTGCCTCTTAATTGATTTCGTTTCTT--------GG---CCAA-TTTTACAT--------CCTCT---------------------TGCG-----------------------GCTAC---------------TGAATTATAATATTTG--TC-GGGAAAGTGAAAGAAAGTAATTTCT-CGGCTCCTGCGGATCGT-------TCCGTCGCTCCATCATTGCG---CTCTGAGGGGTCCATC
droFic1 scf7180000454105:229225-229547 - AGT------C---------------------CCGGGGCACGAGGAGATCTTGGCACGTCTCGCCGAACAAGGTAGGT-G----------------------------------------------CTCGTC-CTCGTCCTCGTCCCCATCCT--CGTCCCGGATGACTTGTCAAT----TTCCCAATTTTCCGCTCCGTCTGCGTTTGCGTTTGCATTT----G-----CG-------A------------------------ACGGG--------GATCTTGGGAGGA-------------AGGAGGGA-----------------GTCCGTCTTAATTGAATTCGTTTCTT--------GGCCGCAAA-CTTTGCAT--------CCCGT---------------------TGCGGCAATATTCGCA------------CTAC----------------------TTGTATTTG--TC-GGGAAAGTGAAAGAAAGTCATTTCT-CGGCTCCTGCGGCTCGA-------TC-GTCGCTCCATCATTACG---CTCCGAGAAG-CCATC
droKik1 scf7180000302510:740489-740812 - AGT------CAA---CATCAGC---GCAGTGCCGTGGCACGAGAAGATCTTGGCACGTCTCGCCGAACAAGGTAGGTCC------------------------------------------TCAGCCAGTCTCTCATC--------CGTTCT--CGTCCCGGCTGACTTGTCAAT----TTCTTAATTTTCCGCATGGCCGGACTTCGC--------------------C---------------------------------GCAG--------------------------------------------------------------GGATCTTAATTGATTTAATTTTTTGCTTTTTGGG---CATT-TTTTACAT--------TCTCT---------------------GGCGGCA-CAGCAGCAGTACCATAGTGCCTCC---------------TGAATTATGATATTTG--TC-GGGAAAGTGAAAGAAAGTAATTTCT-CGGCTCCTTTGGTTCGT-------TCCAACGCTCCATCATTAGG---CTCTGAGGGGTCCATG
droAna3 scaffold_13337:128463-128723 - GCT------CCA---CATC------CCAGGGACGAGGTTCGAGGAAGTCTTGGCACGTCTCGCCGAATAAGGTAAGTTA----------------------------------------------CG-------------------------------------GAC---TAAAA----TTTTTCATTTTCCGCTCTGTCTGAAATC----------------------------------GT--------------------CCCGGAGTTTGGGAATCTGGC-------------------------------------------CTGGAACTTAATTGATTTTATTTCTG--------GG---GAAG-TTTCACAT--------CCCAT---------------------TGCC-----------------------GATGC---------------T--------------G--TCGAGGAAAGTGAAAGAAAGCAATTTCT-CGGCTCCTCCGGCTCGC-------TCTATCATTCCATCAT-GAG---CTCTGAGGGGTTCATC
droBip1 scf7180000395155:629400-629664 + AGT------CCTCCGCATC------CCAGGGACGGGGCTCGAGGAAATCTTGGCACGTCTCGCCGCACAAGGTAGGTTA----------------------------------------------CG-------------------------------------GAC---TCGAA----TTTTTCATTTTCCGCTCTGTCTGAA----------------------------------AACGT--------------------CCCGGAGTTTGGGAATCTGGC-------------------------------------------CTGGAACTTAATTGATTTCATTTCTG--------GG---GAAG-TTTCACAT--------CCCAT---------------------TGCC-----------------------GAT------------------------------GTGGCCG-AGGAAAGTGAAAGAAAGCAATTTTT-CGACTCCTCCGGCTCGG-------TCTATCGTTCCATCATTGAG---CTCTGAGGGGTCCATC
dp5 XR_group8:956026-956391 - AGT------CCTCCTCATCTGCCACGCAGGGCCGTGGCACCAGACGATCGTGGCATATCTCACCGAACAAGGTAAATAT-------ACCCATATACCAATTCCAATGTAAATC------------CTGGTT-CC--------------------CGTTCCAGTTGGATTGTCAAT----TTCTTAATTTTCCGCTTCGTCGGACTCGGG--------------------GACT-----------------CTGGGACTCT--------------------------GGAAGTCTGAGAGTCTGAGAGTCT-----------------GGGGCTCTTAATTGATTTCGTTTCTTTC------TG---CAAC-ATTTACATGCATACATCCTCCTGGCTGCTCGGTGGCTTCTCCGGTG-----------------------GCTAC---------------TGAATTATGATATTTG--TC-GGGAAAGTGAAAGAAAGTCATTTCTGTGGCTCCTTCGG--------------------TCCATCATTACG---CTTTGAGGGGTCCATC
droPer2 scaffold_32:519226-519591 + AGT------CCTCCCCATCTGCCACGCAGGGCCGTGGCACCAGACGATCGTGGCATATCTCACCGAACAAGGTAAATAT-------ACCCATATACCAATTCCAATGTAAATC------------CTGGTT-CC--------------------CGTTCCAGTTGGCTTGTCAAT----TTCTTAATTTTCCGCTTCGTCGGACTCGGG--------------------GACT-----------------CTGGGACTCT--------------------------GGAACTCTGAGAGTCTGAGAGTCT-----------------GGGGCTCTTAATTGATTTCGTTTCTTTC------TG---CAAC-ATTTACATGCATACATCCTCCTGGCTGCTCGGTGGCTTCTCCGGTG-----------------------GCTAC---------------TGAATTATGATATTTG--TC-GGGAAAGTGAAAGAAAGTCATTTCTGTGGCTCCTTCGG--------------------TCCATCATTACG---CTTTGAGGGGTCCATC
droWil2 scf2_1100000004540:2354164-2354513 + TTT------CCT---CCAT------ACAGGGTCGTGGCACAAGAAGATCTTGGCATATATCACCGAATAAGGTAAGAGGATAATATAT-GATATTTCATCC--------------------C---CCCTCC-CTCTTCACCTTCCCCATTCCCATGTTCAGGTT-GTATGTAAATTTTTTTCTTAATTTTACGCTTCGTTTGTGGATATATATATTTTTTTTTGGTTTTAA--TTGAAATCAT--------------------TTTCCAACTTGGTCGTCTGGC-------------------------------------------TTA-------------TTTATTT-TT--------GGTCTCGA--CT------------------TTGGCTGCTTGTCTG-----TCTGGG-----------------------GCTACTGGCAGGCATTTTGGTGAATTATGATATCCG--TC-GGGAAAGTGAAAGAAAGTAATTTCTTCGACTCCTTCATTTTG-----------------------------------------GCCATC
droVir3 scaffold_13049:2719545-2719738 - ATC------CAA---------CG-GCCAGGGCCGCGGTGCACGCAGATCGTGGCATGTCTCGCCGAACAAGGTAGGTTA------------------------AACGCAGTTT------------CTGTTT-TT--------------------TTTTTTTTTTAATTTTGTTAT----TTTTTAATTTAACGCTTCGTCTGCGTTTCCTT------------------AA--TGGCAACCAAC---T----------------------------CC--------------------CTC-GAGACGCC-----CC------TGGGGCTGCTCCTAATTGATATCATTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT
droMoj3 scaffold_6654:1175494-1175564 + CT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC------------TGCTGCTGCTGTG-------------------------------------------TGAATTATGATATCCG--TC-TGGAAAGTGAAAGAAAGTCATTTCT-CGAA-----------------------------------CTACG-----------------CC
droGri2 scaffold_15110:3707477-3707666 - GGT-----------------------------CGTGGTGCACGCAGATCGTGGCATTTATCCACGAATAAGGTGAGTTT----------------------------------------------TTTGTC-GT--------------------CTTTTTTGTTGGGTTTCTGAT----TTTTTAATTTAACGCTTCGTCGGCATTTCCTG------------------AA--GGGT-CTTAAC---T----------------------------C-----------------------------CAAAATGCTCCGCCTTATCGTGCTGCTCTTAATTGATTTCATTTT-----------------------------------------------------------------------------------------GCTTT---------------TGAATTATGTTATTT-----------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGT------C---------GGCG-T-----CTCGCGTCTCGAGGAGATCGTGGCACGCCTCGCCGACAAAGGTATGTTG----------------------------------------------CTCGTC-CTCATA--------CGT---------CCTCATGACTTATCC------------ATTTAACGCTCCGTTAGCCTTTTT--------------------GA--TGGAAAGCAA--------------------------------------------------------TC-GGGAGGAA-----------------GTGCATCTTAATTGATTTCGTTTCTT--------TG---CAAA-TTTTACGT--------CCTCT---------------------TGCG-----------------------GCTAC---------------TGAATTATGTTATTTG--TC-AGGAAAGTAAAAGAAAGTAATTTCT-CGTCTCCTGCGGCT--------------------------------------------CCATCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................GAAAGCAA--------------------------------------------------------TC-GGGAGGAA-----------------GTGC...............................................................................................................................................................................................................................................2211.00100010000000000000
.GT------C---------GGCG-T-----CTCGCGTCTCGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTG--TC-AGGAAAGTAAAAGA...........................................................................2111.00101000000000000000
......................................................................................................................................................................................................................................................................................................................................................TTTCGTTTCTT--------TG---CAAA-.......................................................................................................................................................................................................1711.00100000001000000000
....................................TCTCGAGGAGATCGTGGCACGCCTCGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000000000
..........................................GGAGATCGTGGCACGCCTCGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................T--------CCTCT---------------------TGCG-----------------------GCTAC---------------TGAATTATGT....................................................................................................2511.00100010000000000000
droSec2
AGT------C---------GGCG-T-----CTCGCGTCTCGAGGAGATCGTGGCACGCCTCGCCGACAAAGGTATGTTG----------------------------------------------CTCGTC-CTCATA--------CGT---------CCTCATGACTTATCC------------ATTTACCGCTCCGTTAGCCTTTTT--------------------GA--TGGAAAGCAA--------------------------------------------------------TC-GGGAGGAA-----------------GTGCATCTTAATTGATTTCGTTTCAT--------TG---CAAA-TTTTACGT--------CCTCT---------------------TGCG-----------------------GCTAC---------------TGAATTATGTTATTTG--TC-AGGAAAGTAAATGAAAGTAATTTCT-CGGCTCCTGCGGCT--------------------------------------------CCATCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................CTCGAGGAGATCGTGGCACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020200
.............................................................................................................................................................................................................TTTT--------------------GA--TGGAAAGCAA--------------------------------------------------------TC-GGGAG.......................................................................................................................................................................................................................................................................2311.0010100
......................................................................................................................................................................CTTATCC------------ATTTACCGCTCCGTT..................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
................................CGCGTCTCGAGGAGATCGTGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
.........C---------GGCG-T-----CTCGCGTCTCGAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.............................................................................................................................................................................................................................................................................................................................................CTTAATTGATTTCGTTTC...........................................................................................................................................................................................................................1811.0010010
dm3
AGT------C---------GGTG-T-----CTCGTGTCTCGAGGAGATCGTGGCACGCCTCGCCGACAAAGGTATGTTT----------------------------------------------CTCGTC-CT--------------------CATACCGAATGACTCGTCC------------ATTTACCGCTCCGTTAGACTTTTT--------------------GA--TGGAAA------------------------GCAGG--------CA--------------------GTC-GAGAGGAA-----------------ATGCATCTTAATTGATTTCGTTTCCT--------TG---CAAA-TTTTACGT--------CCTCT---------------------TGC--------------------------------------------TTAATTATGATATTTG--TC-AGGAAAGTAAAAGAAAGTAATTTCT-CAGCTCCTGCGGC--------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................T-----CTCGTGTCTCGAGGAGATCGTGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000
.......................................CGAGGAGATCGTGGCACGCCTCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................GGAGATCGTGGCACGCCTCGCCGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TCGTGTCTCGAGGAGATCGTGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000
.............................................................................................................................................................................................................................................AA------------------------GCAGG--------CA--------------------GTC-GAGAGGAA-----------------ATG................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTG--TC-AGGAAAGTAAAAGA...........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......................................................................................................................................................................................................................................A--TGGAAA------------------------GCAGG--------CA--------------------GTC-GAG.........................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................A--TGGAAA------------------------GCAGG--------CA--------------------GTC-GAGAGGA.....................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....................TG-T-----CTCGTGTCTCGAGGAGATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................CTCGAGGAGATCGTGGCACGCCTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TG-T-----CTCGTGTCTCGAGGAGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................CT---------------------TGC--------------------------------------------TTAATTATGATATTTG--T...........................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..T------C---------GGTG-T-----CTCGTGTCTCGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.........................................AGGAGATCGTGGCACGCCTCGCCGACAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GGTG-T-----CTCGTGTCTCGAGGAGATCGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AGT------C---------GGTG-T-----CTCGTGTCTCGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......................................................................................................................................................................TCGTCC------------ATTTACCGCTCCGTTAGAC..............................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TCT---------------------TGC--------------------------------------------TTAATTATGATATTTG--T...........................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................G---CAAA-TTTTACGT--------CCTCT---------------------TGC--------------------------------------------..............................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TTTTT--------------------GA--TGGAAA------------------------GCAGG--------CA--------------------G...............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CTCT---------------------TGC--------------------------------------------TTAATTATGATATTTG--TC-AGGA.....................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........C---------GGTG-T-----CTCGTGTCTCGAGGAGATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................GTCTCGAGGAGATCGTGGCACGCCTCGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............................................TCGTGGCACGCCTCGCCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTG--TC-AGGAAAGTAAAAA............................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.....................TG-T-----CTCGTGTCTCGAGGAGATCGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TCGAGGAGATCGTGGCACGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.....................TG-T-----CTCGTGTCTCGAGGAGATCGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.................................GTGTCTCGAGGAGATCGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................CTTTTT--------------------GA--TGGAAA------------------------GCAGG--------GC--------------------A...............................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGT------C---------GACG-T-----CTCGCGGCTCGAGGAGATCGTGGCACGCCTCGCCGACAAAGGTATGTTG----------------------------------------------CTCGTC-CT--------------------CATACCGGATGACTTGTCAAT----TTCCCAATTTTCCGCTCCGTTAGCCTTTTT--------------------GA--TGGGAA------------------------GCAGG--------CA--------------------GTC-GGGAGGAA-----------------GTGCATCTTGATTGATTTCGTTTTTT--------TG---CAAA-TTGTACAT--------CCTCT---------------------TGCG-----------------------GCTAC---------------TGAATTATGATATTTG--TC-AGGAAAGTGAAAGAAAGTAATTTCT-CGGCTCCTGCAACTCGA-------TCCGTCGCTCCATCAGTTCG---CTCAGGGGGGACCATCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CGGCTCCTGCAACTCGA-------TCCGTCGCTCC............................29120.002000000020
.GT------C---------GACG-T-----CTCGCGGCTCGAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
.........C---------GACG-T-----CTCGCGGCTCGAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
.....................................CTCGAGGAGATCGTGGCACGCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
.........C---------GACG-T-----CTCGCGGCTCGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................................CT---------------------TGCG-----------------------GCTAC---------------TGAATTATGAT...................................................................................................2211.0011000000
..........................................GGAGATCGTGGCACGCCTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
....................................GCTCGAGGAGATCGTGGCACGCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
.........C---------GACG-T-----CTCGCGGCTCGAGGAGATCGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
.....................................CTCGAGGAGATCGTGGCACGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGATATTTG--TC-AGGAAAGTGAA..............................................................................2611.0010000100
.........................................AGGAGATCGTGGCACGCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
droYak3
AGT------C---------GACG-T-----CTCGCGGCTCGAGGAGATCGTGGCACGCCTCGCCGACAAAGGTATGTTG----------------------------------------------CTCGTC-CT--------------------CATACCGGATGACTTGTCAAT----TCCCCAATTTTCCGCTCCGTTAGCCTTTTT--------------------GA--TGGAAAGCAAA---CAGTAGGCAGCAGGCA----G--------CA--------------------GTC-GGGAGGAA-----------------GTGGATCTTAATTGATTTCGTTTCTT--------TG---CAAA-TTGTACAT--------CCTCT---------------------TGCG-----------------------GCTAC---------------TGAATTATGATATTTG--TC-TGGAAAGTGAAAGAAAGTAATTTCT-CGGCTCCTGCGGCTCGA-------TCCGTAGCTCCATCAATTCG---CTCTGAGGGGTCCATCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................G-T-----CTCGCGGCTCGAGGAGATCGTGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
................................CGCGGCTCGAGGAGATCGTGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.................................................................................................................................................................................................................................................AAA---CAGTAGGCAGCAGGCA----G--------CA--------------------................................................................................................................................................................................................................................................................................2211.00100010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTG--TC-TGGAAAGTGAAAGAAAGTAAT....................................................................2811.00100000010000
..........................................................................................................................................................................................TTTTCCGCTCCGTTAGCCTT............................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
......................G-T-----CTCGCGGCTCGAGGAGATCGTGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
.GT------C---------GACG-T-----CTCGCGGCTCGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.............................................................................................................................................................................AT----TCCCCAATTTTCCGCTCCGTT..................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
....................................GCTCGAGGAGATCGTGGCACGCCTCGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000100000
.........C---------GACG-T-----CTCGCGGCTCGAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.......................................CGAGGAGATCGTGGCACGCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
................................................................GACAAAGGTATGTTG----------------------------------------------CTCGTC-CT--------------------CA..............................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
.............................................GATCGTGGCACGCCTCGCCGACAAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
..............................................ATCGTGGCACGCCTCGCCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
...................GACG-T-----CTCGCGGCTCGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................A-TTGTACAT--------CCTCT---------------------TGCG-----------------------GCTAC---------------T.............................................................................................................2411.00100000010000
AGT------C---------GACG-T-----CTCGCGGCTCGAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.....................................CTCGAGGAGATCGTGGCACGCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.............................................GATCGTGGCACGCCTCGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...................................GGCTCGAGGAGATCGTGGCACGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................TGTACAT--------CCTCT---------------------TGT..........................................................................................................................................................15170.06100000000001
droEug1
AGT------CAA---CGACGGCG-T-----TGCGGGGCACGAGAAGATCGTGGCACGTCTCGCCGAACAAGGTAGGTTG----------------------------------------------CACATC-CT--------------------CGTCCCGGATGACTTGTCAAT----TTCTTAATTTTCCGCTCCGTCTGTCTTTCC--------------------AA--CGGGGA------------------------GCAGA--------GA--------------------TCT-TGGAGGAA-----------------GTGCATCTTAATTGATTTTGTTTCTT--------GG---CCAA-TTTTAAAT--------CCTCT---------------------TGCG-----------------------GCTAC---------------TGAATTATGATGTTTGCCTC-GGGAAAGTGAAAGAAAGTAATTTTT-TGGCTC---------GG-------TCGGCCTCTCCATCTTTACG---CTCTGAGGGGTCCATCSizeHit CountTotal NormTotal
No Reads
droBia1
AGG------CCA---CGTCGGCG-T-----CCCGCGGCACGAGGAGATCGTGGCACGTCTCGCCGAACAAGGTAGGTGG----------------------------------------------CTCGTC-CT--------------------CGT-CCGGATGACTTGTCGAT----TTCTTAATTTTCCGCTTCGTCTGGCTTTGC--------------------AAAC-----------------CGGGGAACAGCGAACAGG--------GA--------------------TTC-GGGAGGAA-----------------GTGCACCTTAATTGATTTCGTTTCTT--------GG---CCAA-TTTTACAT--------CCTCT---------------------TGCT-----------------------GCTAC---------------TGAATTATGATATTCG--TT-GGGAAAGTGAAAGAAAGTAATTTCT-CGCCTCCTGCGGCTTGC-------TCCGTCGCTCCATCATTACG---CTCCGAAGAGTCCATCSizeHit CountTotal NormTotal
No Reads
droTak1
AG----------------------------------GCACGAGAAGATCGTGGCACGTCTCACCGAACAAGGTAGGTTG------------------------------AGTGCTGGTGCTCCAGCTCGTC-CT--------------------CGTCCCGGATGACTTGTCAAT----TTCTTAATTTTACGCTCCGTCTGCCTTTTG--------------------AA-------A------------------------ACAGG--------GA--------------------TTC-GGGAGGAA-----------------GTGCATCTTAATTGATTTCGTTTCTT--------GG---CCACTTTTTGCAT--------CCCCT---------------------TGCGT-------------------TTGGCTAC---------------TGAATTATGATATTTG--TC-GGGAAAGTGAAAGAAAGTCATTTCT-CGGCTCCTGCGGTTCGTTTTTCGGTCCGTCGCTCCATCATTACGCTGCTCTGAGGGGTCCATCSizeHit CountTotal NormTotal
No Reads
droEle1
GAACGGATTCAT---CGTCGGCC-T-----GCCGCAGCACGAGAAGATCTTGGCACGTCTCGCCGAACAAGGTAAGCTG----------------------------------------------CTCGTT-CTCGTACTCGTCCTCGTCCT--CGTCCCGGATGACTTGTCAAT----TTCTTAATTTTCCGCTCCGACTGCCTCTGC--------------------AA--------GTAAGGTGGAGCAGTCAGCAGGGAGCAGG--------GA--------------------TTC-GGGAGGAA-----------------GTGCATTTTAGTTGATTCCGTTTCTT--------GG---CCAA-TTTTACAT--------CCTCT---------------------TGCG-----------------------GCTAC---------------TGAATTATGTTATTTG--TC-GGGAAAGTGAAAGAAAGTAATTTCT-CGGCTCCTGCGGTTCGATTT--GGT---TCGT-------------------------TTCGTCSizeHit CountTotal NormTotal
No Reads
droRho1
AGT------CAT---CGTCGGCG-T-----CCCGCGGCACGAGAAGATCTTGGCACGTCTCGCCGAACAAGGTAAGCTC----------------------------------------------CTCGTC-CT--------------------CGTCCCGGGTGACTTGTCAAT----TTCTCAATTTTCCGCTCCGTCTGCATTTGC--------------------AA--CGGGGA------------------------GCAGG--------GA--------------------TTA-GGGAGGAA-----------------GTGCCTCTTAATTGATTTCGTTTCTT--------GG---CCAA-TTTTACAT--------CCTCT---------------------TGCG-----------------------GCTAC---------------TGAATTATAATATTTG--TC-GGGAAAGTGAAAGAAAGTAATTTCT-CGGCTCCTGCGGATCGT-------TCCGTCGCTCCATCATTGCG---CTCTGAGGGGTCCATCSizeHit CountTotal NormTotal
No Reads
droFic1
AGT------C---------------------CCGGGGCACGAGGAGATCTTGGCACGTCTCGCCGAACAAGGTAGGT-G----------------------------------------------CTCGTC-CTCGTCCTCGTCCCCATCCT--CGTCCCGGATGACTTGTCAAT----TTCCCAATTTTCCGCTCCGTCTGCGTTTGCGTTTGCATTT----G-----CG-------A------------------------ACGGG--------GATCTTGGGAGGA-------------AGGAGGGA-----------------GTCCGTCTTAATTGAATTCGTTTCTT--------GGCCGCAAA-CTTTGCAT--------CCCGT---------------------TGCGGCAATATTCGCA------------CTAC----------------------TTGTATTTG--TC-GGGAAAGTGAAAGAAAGTCATTTCT-CGGCTCCTGCGGCTCGA-------TC-GTCGCTCCATCATTACG---CTCCGAGAAG-CCATCSizeHit CountTotal NormTotal
No Reads
droKik1
AGT------CAA---CATCAGC---GCAGTGCCGTGGCACGAGAAGATCTTGGCACGTCTCGCCGAACAAGGTAGGTCC------------------------------------------TCAGCCAGTCTCTCATC--------CGTTCT--CGTCCCGGCTGACTTGTCAAT----TTCTTAATTTTCCGCATGGCCGGACTTCGC--------------------C---------------------------------GCAG--------------------------------------------------------------GGATCTTAATTGATTTAATTTTTTGCTTTTTGGG---CATT-TTTTACAT--------TCTCT---------------------GGCGGCA-CAGCAGCAGTACCATAGTGCCTCC---------------TGAATTATGATATTTG--TC-GGGAAAGTGAAAGAAAGTAATTTCT-CGGCTCCTTTGGTTCGT-------TCCAACGCTCCATCATTAGG---CTCTGAGGGGTCCATGSizeHit CountTotal NormTotal
No Reads
droAna3
GCT------CCA---CATC------CCAGGGACGAGGTTCGAGGAAGTCTTGGCACGTCTCGCCGAATAAGGTAAGTTA----------------------------------------------CG-------------------------------------GAC---TAAAA----TTTTTCATTTTCCGCTCTGTCTGAAATC----------------------------------GT--------------------CCCGGAGTTTGGGAATCTGGC-------------------------------------------CTGGAACTTAATTGATTTTATTTCTG--------GG---GAAG-TTTCACAT--------CCCAT---------------------TGCC-----------------------GATGC---------------T--------------G--TCGAGGAAAGTGAAAGAAAGCAATTTCT-CGGCTCCTCCGGCTCGC-------TCTATCATTCCATCAT-GAG---CTCTGAGGGGTTCATCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........CCA---CATC------CCAGGGACGAGGTTCGAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002110000
................................................CTTGGCACGTCTCGCCGAATAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
GCT------CCA---CATC------CCAGGGACGAGGTTCGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT-CGGCTCCTCCGGCTCGC-------TCTATC.................................2611.001001000
........................................GAGGAAGTCTTGGCACGTCTCGCCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
droBip1
AGT------CCTCCGCATC------CCAGGGACGGGGCTCGAGGAAATCTTGGCACGTCTCGCCGCACAAGGTAGGTTA----------------------------------------------CG-------------------------------------GAC---TCGAA----TTTTTCATTTTCCGCTCTGTCTGAA----------------------------------AACGT--------------------CCCGGAGTTTGGGAATCTGGC-------------------------------------------CTGGAACTTAATTGATTTCATTTCTG--------GG---GAAG-TTTCACAT--------CCCAT---------------------TGCC-----------------------GAT------------------------------GTGGCCG-AGGAAAGTGAAAGAAAGCAATTTTT-CGACTCCTCCGGCTCGG-------TCTATCGTTCCATCATTGAG---CTCTGAGGGGTCCATCSizeHit CountTotal NormTotal
No Reads
dp5
AGT------CCTCCTCATCTGCCACGCAGGGCCGTGGCACCAGACGATCGTGGCATATCTCACCGAACAAGGTAAATAT-------ACCCATATACCAATTCCAATGTAAATC------------CTGGTT-CC--------------------CGTTCCAGTTGGATTGTCAAT----TTCTTAATTTTCCGCTTCGTCGGACTCGGG--------------------GACT-----------------CTGGGACTCT--------------------------GGAAGTCTGAGAGTCTGAGAGTCT-----------------GGGGCTCTTAATTGATTTCGTTTCTTTC------TG---CAAC-ATTTACATGCATACATCCTCCTGGCTGCTCGGTGGCTTCTCCGGTG-----------------------GCTAC---------------TGAATTATGATATTTG--TC-GGGAAAGTGAAAGAAAGTCATTTCTGTGGCTCCTTCGG--------------------TCCATCATTACG---CTTTGAGGGGTCCATCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................GACGATCGTGGCATATCTCACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTTCTGTGGCTCCTTCGG--------------------TCC............................2511.0010100000000
..........CTCCTCATCTGCCACGCAGGGCCGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
...................................................GGCATATCTCACCGAACAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.........CCTCCTCATCTGCCACGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
droPer2
AGT------CCTCCCCATCTGCCACGCAGGGCCGTGGCACCAGACGATCGTGGCATATCTCACCGAACAAGGTAAATAT-------ACCCATATACCAATTCCAATGTAAATC------------CTGGTT-CC--------------------CGTTCCAGTTGGCTTGTCAAT----TTCTTAATTTTCCGCTTCGTCGGACTCGGG--------------------GACT-----------------CTGGGACTCT--------------------------GGAACTCTGAGAGTCTGAGAGTCT-----------------GGGGCTCTTAATTGATTTCGTTTCTTTC------TG---CAAC-ATTTACATGCATACATCCTCCTGGCTGCTCGGTGGCTTCTCCGGTG-----------------------GCTAC---------------TGAATTATGATATTTG--TC-GGGAAAGTGAAAGAAAGTCATTTCTGTGGCTCCTTCGG--------------------TCCATCATTACG---CTTTGAGGGGTCCATCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................AGACGATCGTGGCATATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
droWil2
TTT------CCT---CCAT------ACAGGGTCGTGGCACAAGAAGATCTTGGCATATATCACCGAATAAGGTAAGAGGATAATATAT-GATATTTCATCC--------------------C---CCCTCC-CTCTTCACCTTCCCCATTCCCATGTTCAGGTT-GTATGTAAATTTTTTTCTTAATTTTACGCTTCGTTTGTGGATATATATATTTTTTTTTGGTTTTAA--TTGAAATCAT--------------------TTTCCAACTTGGTCGTCTGGC-------------------------------------------TTA-------------TTTATTT-TT--------GGTCTCGA--CT------------------TTGGCTGCTTGTCTG-----TCTGGG-----------------------GCTACTGGCAGGCATTTTGGTGAATTATGATATCCG--TC-GGGAAAGTGAAAGAAAGTAATTTCTTCGACTCCTTCATTTTG-----------------------------------------GCCATCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
ATC------CAA---------CG-GCCAGGGCCGCGGTGCACGCAGATCGTGGCATGTCTCGCCGAACAAGGTAGGTTA------------------------AACGCAGTTT------------CTGTTT-TT--------------------TTTTTTTTTTAATTTTGTTAT----TTTTTAATTTAACGCTTCGTCTGCGTTTCCTT------------------AA--TGGCAACCAAC---T----------------------------CC--------------------CTC-GAGACGCC-----CC------TGGGGCTGCTCCTAATTGATATCATTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................................................................C-----CC------TGGGGCTGCTCCTAATT......................................................................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................C-----CC------TGGGGCTGCTCCTAATTG.....................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................TTAACGCTTCGTCTGCGTTTCCTT------------------A....................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
ATC------CAA---------CG-GCCAGGGCCGCGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000010000000000000000000000000000
droMoj3
CT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC------------TGCTGCTGCTGTG-------------------------------------------TGAATTATGATATCCG--TC-TGGAAAGTGAAAGAAAGTCATTTCT-CGAA-----------------------------------CTACG-----------------CCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GGT-----------------------------CGTGGTGCACGCAGATCGTGGCATTTATCCACGAATAAGGTGAGTTT----------------------------------------------TTTGTC-GT--------------------CTTTTTTGTTGGGTTTCTGAT----TTTTTAATTTAACGCTTCGTCGGCATTTCCTG------------------AA--GGGT-CTTAAC---T----------------------------C-----------------------------CAAAATGCTCCGCCTTATCGTGCTGCTCTTAATTGATTTCATTTT-----------------------------------------------------------------------------------------GCTTT---------------TGAATTATGTTATTT-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 10:14 PM